0.017030 0.000000 0.000000 0.000000 0.017030 0.000000 0.000000 0.000000 0.006464 0.00000 0.00000 0.00000 Daldrop, P. Lilley, D.M.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 58.720 58.720 154.710 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking Ba 2 137.327 BARIUM ION non-polymer C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking K 1 39.098 POTASSIUM ION non-polymer C15 H22 N6 O5 S 398.437 S-ADENOSYLMETHIONINE non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N BA N 39 N O N 40 N P N 41 N O N 42 N O N 43 N O N 44 N C N 45 R C N 46 N O N 47 S C N 48 N O N 49 R C N 50 N O N 51 R C N 52 N N N 53 N C N 54 N O N 55 N N N 56 N C N 57 N N N 58 N C N 59 N C N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 R C N 85 N O N 86 R C Y 87 N N Y 88 N C Y 89 N N Y 90 N C N 91 N C N 92 N O N 93 N N N 94 N C N 95 N N N 96 N N Y 97 N C N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N K N 113 N N N 114 S C N 115 N C N 116 N O N 117 N O N 118 N C N 119 N C N 120 S S N 121 N C N 122 N C N 123 S C N 124 N O N 125 S C N 126 N O N 127 R C N 128 N O N 129 R C Y 130 N N Y 131 N C Y 132 N N Y 133 N C Y 134 N C N 135 N N Y 136 N N Y 137 N C Y 138 N N Y 139 N C N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N O N 163 N P N 164 N O N 165 N O N 166 N O N 167 N C N 168 R C N 169 N O N 170 S C N 171 N O N 172 R C N 173 N O N 174 R C N 175 N N N 176 N C N 177 N O N 178 N N N 179 N C N 180 N O N 181 N C N 182 N C N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing Y 152 N sing Y 153 N sing Y 154 N doub N 155 N sing Y 156 N sing Y 157 N sing Y 158 N doub N 159 N sing Y 160 N doub N 161 N sing N 162 N sing Y 163 N sing Y 164 N doub N 165 N sing Y 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N doub N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N doub N 200 N sing N 201 N sing UK RNA RNARFU 2122 1355-8382 19 357 10.1261/RNA.036657.112 23325110 The Plasticity of a Structural Motif in RNA: Structural Polymorphism of a Kink Turn as a Function of its Environment. 2013 10.2210/pdb4b5r/pdb pdb_00004b5r 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-10-28 ADSC CCD SINGLE WAVELENGTH M x-ray 1 0.9334 1.0 ID14-1 ESRF 0.9334 SYNCHROTRON ESRF BEAMLINE ID14-1 30607.377 SAM-I RIBOSWITCH APTAMER DOMAIN, RESIDUES 1-94 1 syn polymer 398.437 S-ADENOSYLMETHIONINE 1 syn non-polymer 137.327 BARIUM ION 12 syn non-polymer 39.098 POTASSIUM ION 7 syn non-polymer no no GGCUUAUCAAGAGAGGGGGAGCGACUGGCGCGAAGAACCCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU UGAAAGAUGAGCCG GGCUUAUCAAGAGAGGGGGAGCGACUGGCGCGAAGAACCCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU UGAAAGAUGAGCCG A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.32 47 NONE 7 40 MM NA-CACODYLATE PH 7, 80 MM KCL, 12 MM SPERMINE HCL, 20 MM BACL2, 14 %(V/V) MPD -7.602 1 19 A 1 A 93 -5.069 A_G1:C93_A 1 -1.517 -1.263 -0.291 -0.299 -8.513 1 19 A 2 A 92 5.363 A_G2:C92_A 2 -19.365 -0.633 -0.347 -0.100 -9.829 1 19 A 3 A 91 1.934 A_C3:G91_A 3 -10.738 -0.082 -0.128 -0.214 -20.187 1 20 A 4 A 90 -2.468 A_U4:A90_A 4 -12.909 0.501 0.495 -0.050 -11.446 1 28 A 5 A 89 6.588 A_U5:G89_A 5 -8.329 2.380 0.528 -0.563 3.091 1 20 A 6 A 88 6.485 A_A6:U88_A 6 -14.220 0.567 -0.097 -0.205 -2.164 1 20 A 7 A 87 2.104 A_U7:A87_A 7 -14.123 -0.525 0.027 -0.242 14.579 1 19 A 8 A 86 -4.866 A_C8:G86_A 8 -20.572 0.135 -0.281 -0.171 -14.389 1 20 A 64 A 85 -3.356 A_U64:A85_A 9 -21.199 0.519 0.373 -0.222 21.942 9 11 A 35 A 20 5.170 A_G35:A20_A 10 30.362 6.203 0.409 -4.532 -18.973 10 11 A 36 A 19 -7.666 A_A36:G19_A 11 16.948 -6.281 0.667 -4.940 7.286 10 11 A 37 A 18 -6.519 A_A37:G18_A 12 -1.447 -6.593 -0.438 -3.969 22.028 1 19 A 38 A 17 -0.007 A_C38:G17_A 13 -11.488 -0.162 -0.592 -0.214 3.928 1 19 A 39 A 16 9.002 A_C39:G16_A 14 -3.170 1.260 -0.292 -0.202 8.387 1 19 A 40 A 15 -4.748 A_C40:G15_A 15 -0.993 0.748 -0.350 -0.368 7.067 1 19 A 41 A 13 1.894 A_C41:G13_A 16 -9.425 0.340 0.153 -0.331 6.063 1 19 A 42 A 60 -8.193 A_G42:C60_A 17 -7.126 -0.641 0.294 -0.261 -7.739 1 19 A 43 A 59 3.362 A_G43:C59_A 18 -20.375 -0.454 -0.029 -0.153 -21.669 1 19 A 44 A 58 -11.067 A_C44:G58_A 19 -17.729 -0.418 0.794 -0.251 5.171 1 19 A 47 A 56 0.880 A_C47:G56_A 20 -13.801 -0.206 -0.482 0.110 8.714 1 19 A 48 A 55 7.019 A_C48:G55_A 21 -20.001 1.711 -0.839 -0.266 2.114 1 20 A 49 A 54 13.825 A_A49:U54_A 22 2.528 -0.272 0.284 0.197 1.345 1 19 A 21 A 31 1.848 A_G21:C31_A 23 0.990 -0.492 -0.091 -0.269 0.990 1 19 A 22 A 30 3.710 A_C22:G30_A 24 -0.475 0.311 -0.484 -0.182 7.171 1 19 A 23 A 29 -4.314 A_G23:C29_A 25 -0.684 -0.100 0.157 -0.276 10.485 1 19 A 65 A 28 1.584 A_C65:G28_A 26 -25.427 -0.166 0.084 -0.094 2.942 1 19 A 66 A 27 1.058 A_C66:G27_A 27 -23.856 0.679 0.322 -0.377 4.675 1 16 A 67 A 26 4.166 A_U67:U26_A 28 -31.556 2.886 0.619 -2.044 -2.576 1 19 A 68 A 25 -0.735 A_G68:C25_A 29 -27.086 -0.451 -0.045 -0.266 -3.655 1 19 A 69 A 82 0.994 A_C69:G82_A 30 -10.860 0.287 0.316 -0.235 0.639 1 20 A 70 A 81 0.258 A_A70:U81_A 31 -12.206 0.120 0.169 -0.070 -0.290 1 28 A 71 A 80 9.052 A_G71:U80_A 32 -18.872 -2.386 -0.136 -0.467 12.072 1 19 A 72 A 79 -0.579 A_C72:G79_A 33 -18.888 -0.166 -0.126 -0.252 -6.258 1 19 A 73 A 78 2.400 A_G73:C78_A 34 -7.434 -0.299 -0.610 -0.124 9.122 10 A 74 A 77 -20.179 A_G74:A77_A 35 -3.833 7.119 0.671 -5.209 3.066 36.076 A A 1 2 8.803 A A 93 92 3.375 5.432 0.623 -1.887 AA_G1G2:C92C93_AA 1 0.092 -0.149 35.678 -3.809 -0.993 3.170 32.671 A A 2 3 4.613 A A 92 91 3.223 2.584 -0.860 -1.728 AA_G2C3:G91C92_AA 2 -4.747 8.476 32.233 -3.512 0.720 2.177 37.135 A A 3 4 31.116 A A 91 90 3.503 18.882 -0.319 -1.764 AA_C3U4:A90G91_AA 3 -4.975 8.198 31.742 -5.146 -0.126 2.910 38.858 A A 4 5 13.928 A A 90 89 3.173 9.185 0.217 -0.799 AA_U4U5:G89A90_AA 4 0.422 -0.639 37.796 -2.255 -0.278 1.967 26.721 A A 5 6 22.671 A A 89 88 2.785 10.151 -0.417 -1.276 AA_U5A6:U88G89_AA 5 5.265 -11.758 24.191 -4.778 1.949 2.057 30.255 A A 6 7 35.506 A A 88 87 3.329 17.423 -0.342 -1.233 AA_A6U7:A87U88_AA 6 -1.895 3.863 24.759 -5.574 0.305 3.002 36.536 A A 7 8 1.199 A A 87 86 3.067 0.747 0.073 -1.030 AA_U7C8:G86A87_AA 7 7.318 -11.748 35.812 -1.740 0.830 3.353 45.494 A A 8 64 19.514 A A 86 85 3.954 14.800 -0.647 -1.465 AA_C8U64:A85G86_AA 8 -6.025 7.944 42.735 -3.403 0.223 -0.448 -19.432 A A 35 36 49.487 A A 20 19 4.686 -13.241 -1.596 -1.989 AA_G35A36:G19A20_AA 9 -11.926 -44.573 -7.780 11.987 -10.218 2.598 36.656 A A 36 37 16.295 A A 19 18 2.835 9.991 -0.501 -0.607 AA_A36A37:G18G19_AA 10 -10.351 16.884 33.805 -2.153 -0.433 3.117 59.996 A A 37 38 2.906 A A 18 17 3.164 2.904 0.001 -0.981 AA_A37C38:G17G18_AA 11 -2.022 2.023 59.901 -1.119 -0.097 3.021 37.237 A A 38 39 18.198 A A 17 16 3.754 11.434 -0.033 -1.870 AA_C38C39:G16G17_AA 12 -2.728 4.341 35.395 -4.544 -0.334 2.382 28.910 A A 39 40 14.996 A A 16 15 3.013 7.407 -1.035 -2.126 AA_C39C40:G15G16_AA 13 0.021 -0.042 27.965 -5.637 2.076 2.224 35.612 A A 40 41 17.816 A A 15 13 3.182 10.715 1.276 -2.267 AA_C40C41:G13G15_AA 14 -3.969 6.600 33.785 -5.030 -2.577 3.017 50.758 A A 41 42 1.760 A A 13 60 3.277 1.506 2.204 -1.845 AA_C41G42:C60G13_AA 15 -4.820 5.631 50.523 -2.254 -2.897 3.056 37.700 A A 42 43 13.348 A A 60 59 3.528 8.556 0.712 -1.763 AA_G42G43:C59C60_AA 16 0.005 -0.007 36.751 -3.858 -1.101 3.463 37.829 A A 43 44 3.842 A A 59 58 3.462 2.471 -0.786 -1.260 AA_G43C44:G58C59_AA 17 -8.117 12.619 36.899 -2.284 0.093 4.642 85.640 A A 44 47 7.667 A A 58 56 5.376 10.374 -2.511 -3.212 AA_C44C47:G56G58_AA 18 14.318 -10.582 84.142 -2.728 2.352 3.639 42.508 A A 47 48 3.112 A A 56 55 3.659 2.255 0.070 -0.313 AA_C47C48:G55G56_AA 19 0.982 -1.355 42.440 -0.687 0.015 1.569 28.980 A A 48 49 30.994 A A 55 54 3.102 14.539 0.334 -1.723 AA_C48A49:U54G55_AA 20 -9.004 19.195 23.485 -5.988 -2.244 3.540 36.334 A A 21 22 -5.114 A A 31 30 3.345 -3.170 0.533 -1.955 AA_G21C22:G30C31_AA 21 6.196 -9.993 35.683 -2.665 0.064 2.748 21.646 A A 22 23 10.211 A A 30 29 3.187 3.812 -0.641 -2.464 AA_C22G23:C29G30_AA 22 -1.649 4.417 21.249 -7.950 1.107 3.217 47.235 A A 23 65 -2.957 A A 29 28 3.165 -2.368 -1.852 -0.807 AA_G23C65:G28C29_AA 23 -0.476 0.595 47.177 -0.819 2.274 2.781 34.773 A A 65 66 20.197 A A 28 27 3.389 11.820 -0.835 -1.467 AA_C65C66:G27G28_AA 24 -3.768 6.438 32.549 -4.217 0.836 3.171 50.887 A A 66 67 10.571 A A 27 26 3.287 9.040 0.549 -0.515 AA_C66U67:U26G27_AA 25 1.646 -1.925 50.105 -1.228 -0.524 1.520 38.288 A A 67 68 41.210 A A 26 25 3.111 24.355 -0.346 -0.890 AA_U67G68:C25U26_AA 26 13.140 -22.234 26.723 -3.943 1.922 2.735 31.309 A A 69 70 10.170 A A 82 81 3.020 5.462 -0.122 -1.414 AA_C69A70:U81G82_AA 27 -0.132 0.245 30.840 -3.534 0.204 2.274 26.570 A A 70 71 24.647 A A 81 80 3.046 10.998 0.398 -1.246 AA_A70G71:U80U81_AA 28 0.073 -0.164 24.224 -5.178 -0.849 2.668 42.537 A A 71 72 9.509 A A 80 79 2.800 6.862 -0.377 -0.782 AA_G71C72:G79U80_AA 29 -3.800 5.266 41.840 -1.663 0.195 3.117 31.352 A A 72 73 21.676 A A 79 78 4.036 11.435 0.216 -1.830 AA_C72G73:C78G79_AA 30 3.222 -6.107 29.067 -5.836 0.291 2.830 56.149 A A 73 74 13.134 A A 78 77 2.908 12.264 -2.180 -0.915 AA_G73G74:A77C78_AA 31 -4.920 5.269 54.696 -1.594 2.066 chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Database references Data collection Database references Derived calculations Other Refinement description 1 0 2013-01-30 1 1 2013-03-06 1 2 2023-12-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PDBE Y PDBE 2012-08-07 REL REL SAM S-ADENOSYLMETHIONINE BA BARIUM ION K POTASSIUM ION 119072 THERMOANAEROBACTER TENGCONGENSIS sample MUTATIONS U17G, G22C, C30G, U34A, A94G 3GX5 PDB ENTRY 3GX5 PDB experimental model SAM 1095 2 SAM SAM 1095 A BA 1096 3 BA BA 1096 A K 1097 4 K K 1097 A K 1098 4 K K 1098 A BA 1099 3 BA BA 1099 A K 1100 4 K K 1100 A BA 1101 3 BA BA 1101 A K 1102 4 K K 1102 A K 1103 4 K K 1103 A BA 1104 3 BA BA 1104 A BA 1105 3 BA BA 1105 A BA 1106 3 BA BA 1106 A BA 1107 3 BA BA 1107 A BA 1108 3 BA BA 1108 A BA 1109 3 BA BA 1109 A BA 1110 3 BA BA 1110 A BA 1111 3 BA BA 1111 A BA 1112 3 BA BA 1112 A K 1113 4 K K 1113 A K 1114 4 K K 1114 A G 1 n 1 G 1 A G 2 n 2 G 2 A C 3 n 3 C 3 A U 4 n 4 U 4 A U 5 n 5 U 5 A A 6 n 6 A 6 A U 7 n 7 U 7 A C 8 n 8 C 8 A A 9 n 9 A 9 A A 10 n 10 A 10 A G 11 n 11 G 11 A A 12 n 12 A 12 A G 13 n 13 G 13 A A 14 n 14 A 14 A G 15 n 15 G 15 A G 16 n 16 G 16 A G 17 n 17 G 17 A G 18 n 18 G 18 A G 19 n 19 G 19 A A 20 n 20 A 20 A G 21 n 21 G 21 A C 22 n 22 C 22 A G 23 n 23 G 23 A A 24 n 24 A 24 A C 25 n 25 C 25 A U 26 n 26 U 26 A G 27 n 27 G 27 A G 28 n 28 G 28 A C 29 n 29 C 29 A G 30 n 30 G 30 A C 31 n 31 C 31 A G 32 n 32 G 32 A A 33 n 33 A 33 A A 34 n 34 A 34 A G 35 n 35 G 35 A A 36 n 36 A 36 A A 37 n 37 A 37 A C 38 n 38 C 38 A C 39 n 39 C 39 A C 40 n 40 C 40 A C 41 n 41 C 41 A G 42 n 42 G 42 A G 43 n 43 G 43 A C 44 n 44 C 44 A A 45 n 45 A 45 A A 46 n 46 A 46 A C 47 n 47 C 47 A C 48 n 48 C 48 A A 49 n 49 A 49 A G 50 n 50 G 50 A A 51 n 51 A 51 A A 52 n 52 A 52 A A 53 n 53 A 53 A U 54 n 54 U 54 A G 55 n 55 G 55 A G 56 n 56 G 56 A U 57 n 57 U 57 A G 58 n 58 G 58 A C 59 n 59 C 59 A C 60 n 60 C 60 A A 61 n 61 A 61 A A 62 n 62 A 62 A U 63 n 63 U 63 A U 64 n 64 U 64 A C 65 n 65 C 65 A C 66 n 66 C 66 A U 67 n 67 U 67 A G 68 n 68 G 68 A C 69 n 69 C 69 A A 70 n 70 A 70 A G 71 n 71 G 71 A C 72 n 72 C 72 A G 73 n 73 G 73 A G 74 n 74 G 74 A A 75 n 75 A 75 A A 76 n 76 A 76 A A 77 n 77 A 77 A C 78 n 78 C 78 A G 79 n 79 G 79 A U 80 n 80 U 80 A U 81 n 81 U 81 A G 82 n 82 G 82 A A 83 n 83 A 83 A A 84 n 84 A 84 A A 85 n 85 A 85 A G 86 n 86 G 86 A A 87 n 87 A 87 A U 88 n 88 U 88 A G 89 n 89 G 89 A A 90 n 90 A 90 A G 91 n 91 G 91 A C 92 n 92 C 92 A C 93 n 93 C 93 A G 94 n 94 G 94 A 0.3566 0.1324 0.4365 0.4905 -0.1037 0.6950 0.0031 -0.0510 0.0280 0.0293 0.0051 0.0716 -0.0142 -0.0771 -0.0082 0.0051 0.0011 0.0169 0.0086 -0.0004 0.0602 refined 8.0458 -11.3258 -16.5567 X-RAY DIFFRACTION A 1 A 94 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 2 dimeric 9760 -284.7 27220 A G 1 A N7 G 1 7_555 A BA 1106 M BA BA 1_555 A G 1 A O6 G 1 7_555 56.7 A G 1 A N7 G 1 7_555 A BA 1106 M BA BA 1_555 A BA 1110 Q BA BA 1_555 99.9 A G 1 A O6 G 1 7_555 A BA 1106 M BA BA 1_555 A BA 1110 Q BA BA 1_555 60.2 A A 10 A OP2 A 10 1_555 A K 1097 D K K 1_555 A G 11 A OP2 G 11 1_555 77.2 A A 10 A OP2 A 10 1_555 A K 1097 D K K 1_555 A A 62 A OP1 A 62 1_555 108.7 A G 11 A OP2 G 11 1_555 A K 1097 D K K 1_555 A A 62 A OP1 A 62 1_555 167.1 A G 11 A O6 G 11 1_555 A BA 1101 H BA BA 1_555 A U 64 A OP1 U 64 1_555 130.1 A G 15 A O6 G 15 1_555 A BA 1104 K BA BA 1_555 A G 16 A N7 G 16 1_555 66.0 A G 15 A O6 G 15 1_555 A BA 1104 K BA BA 1_555 A G 16 A O6 G 16 1_555 62.3 A G 16 A N7 G 16 1_555 A BA 1104 K BA BA 1_555 A G 16 A O6 G 16 1_555 63.4 A G 27 A O6 G 27 1_555 A BA 1096 C BA BA 1_555 A G 28 A O6 G 28 1_555 62.0 A U 64 A O2' U 64 1_555 A BA 1099 F BA BA 1_555 A U 64 A O2 U 64 1_555 65.9 A U 64 A O2' U 64 1_555 A BA 1099 F BA BA 1_555 A U 67 A O4 U 67 1_555 126.6 A U 64 A O2 U 64 1_555 A BA 1099 F BA BA 1_555 A U 67 A O4 U 67 1_555 145.8 A G 71 A O6 G 71 1_555 A K 1102 I K K 1_555 A G 79 A O6 G 79 1_555 61.4 A G 71 A O6 G 71 1_555 A K 1102 I K K 1_555 A U 80 A O4 U 80 1_555 76.2 A G 79 A O6 G 79 1_555 A K 1102 I K K 1_555 A U 80 A O4 U 80 1_555 71.3 A G 74 A N7 G 74 1_455 A BA 1105 L BA BA 1_555 A G 74 A O6 G 74 1_455 59.7 A G 94 A O6 G 94 7_555 A BA 1112 S BA BA 1_555 A G 94 A O6 G 94 1_555 55.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 A A N2 O2' G G 19 35 2.01 1 A A N1 O2' G G 19 35 2.06 1 7.96 1.20 119.70 127.66 A A A C3' O3' P G G G 1 1 2 Y 1 12.85 1.20 119.70 132.55 A A A C3' O3' P A A A 9 9 10 Y 1 10.13 1.60 113.70 123.83 A A A C2' C3' O3' G G G 18 18 18 N 1 10.15 1.20 119.70 129.85 A A A C3' O3' P G G G 18 18 19 Y 1 12.20 1.20 119.70 131.90 A A A C3' O3' P A A A 33 33 34 Y 1 -7.38 1.20 119.70 112.32 A A A C3' O3' P C C G 93 93 94 Y 1 A A P OP3 G G 1 1 -0.118 0.012 1.607 1.489 N 38.436 9.83 0.00 0.00 9.83 0.00 -19.66 0.909 0.900 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U VALUES WITH TLS ADDED 0.25195 0.21913 0.22056 2.95 54.90 287 5898 4.6 99.81 20.209 0.204 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.095 0.80 0.80 1.20 PDB ENTRY 3GX5 MAXIMUM LIKELIHOOD MASK 2.95 54.90 0 2079 46 2033 0 0.005 0.011 2309 1.685 1.475 3601 0.103 0.200 381 0.007 0.020 1013 0.316 0.321 3.025 21 408 20 99.08 2.95 32.00 4B5R 6230 3.0 0.18 1 11.50 8.7 99.9 0.59 2.95 3.11 3.70 1 9.1 100.0 refinement REFMAC 5.6.0117 data reduction MOSFLM data scaling SCALA phasing MOLREP SAM-I riboswitch bearing the H. marismortui K-t-7 1 N N 2 N N 3 N N 4 N N 4 N N 3 N N 4 N N 3 N N 4 N N 4 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N metalc 2.943 A G 1 A N7 G 1 7_555 A BA 1106 M BA BA 1_555 metalc 3.487 A G 1 A O6 G 1 7_555 A BA 1106 M BA BA 1_555 metalc 3.169 A G 1 A N7 G 1 1_555 A BA 1110 Q BA BA 1_555 metalc 3.463 A A 10 A OP2 A 10 1_555 A K 1097 D K K 1_555 metalc 2.728 A G 11 A OP2 G 11 1_555 A K 1097 D K K 1_555 metalc 2.731 A G 11 A O6 G 11 1_555 A BA 1101 H BA BA 1_555 metalc 3.006 A G 13 A N7 G 13 1_555 A K 1114 U K K 1_555 metalc 3.406 A G 15 A O6 G 15 1_555 A BA 1104 K BA BA 1_555 metalc 2.969 A G 16 A N7 G 16 1_555 A BA 1104 K BA BA 1_555 metalc 2.908 A G 16 A O6 G 16 1_555 A BA 1104 K BA BA 1_555 metalc 3.011 A G 18 A O6 G 18 1_555 A BA 1107 N BA BA 1_555 metalc 3.035 A G 27 A O6 G 27 1_555 A BA 1096 C BA BA 1_555 metalc 3.145 A G 28 A O6 G 28 1_555 A BA 1096 C BA BA 1_555 metalc 3.369 A G 32 A O6 G 32 8_554 A BA 1109 P BA BA 1_555 metalc 2.887 A G 50 A O6 G 50 1_555 A K 1098 E K K 1_555 metalc 2.739 A A 62 A OP1 A 62 1_555 A K 1097 D K K 1_555 metalc 3.013 A U 64 A O2' U 64 1_555 A BA 1099 F BA BA 1_555 metalc 3.095 A U 64 A O2 U 64 1_555 A BA 1099 F BA BA 1_555 metalc 3.371 A U 64 A OP1 U 64 1_555 A BA 1101 H BA BA 1_555 metalc 3.353 A U 67 A O4 U 67 1_555 A BA 1099 F BA BA 1_555 metalc 3.183 A G 71 A O6 G 71 1_555 A K 1102 I K K 1_555 metalc 2.881 A G 74 A N7 G 74 1_455 A BA 1105 L BA BA 1_555 metalc 3.292 A G 74 A O6 G 74 1_455 A BA 1105 L BA BA 1_555 metalc 2.705 A G 79 A O6 G 79 1_555 A K 1102 I K K 1_555 metalc 3.178 A U 80 A O4 U 80 1_555 A K 1102 I K K 1_555 metalc 2.980 A G 82 A O6 G 82 1_555 A K 1100 G K K 1_555 metalc 3.355 A G 86 A O6 G 86 1_555 A K 1103 J K K 1_555 metalc 3.413 A U 88 A O4 U 88 1_555 A BA 1108 O BA BA 1_555 metalc 3.037 A G 94 A O6 G 94 7_555 A BA 1112 S BA BA 1_555 metalc 3.110 A G 94 A O6 G 94 1_555 A BA 1112 S BA BA 1_555 metalc 1.776 A BA 1106 M BA BA 7_555 A BA 1110 Q BA BA 1_555 hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 93 A N3 C 93 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 93 A O2 C 93 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 93 A N4 C 93 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 92 A N3 C 92 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 92 A O2 C 92 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 92 A N4 C 92 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 A G 91 A N1 G 91 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 A G 91 A O6 G 91 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 A G 91 A N2 G 91 1_555 hydrog WATSON-CRICK A U 4 A N3 U 4 1_555 A A 90 A N1 A 90 1_555 hydrog WATSON-CRICK A U 4 A O4 U 4 1_555 A A 90 A N6 A 90 1_555 hydrog TYPE_28_PAIR A U 5 A N3 U 5 1_555 A G 89 A O6 G 89 1_555 hydrog TYPE_28_PAIR A U 5 A O2 U 5 1_555 A G 89 A N1 G 89 1_555 hydrog WATSON-CRICK A A 6 A N1 A 6 1_555 A U 88 A N3 U 88 1_555 hydrog WATSON-CRICK A A 6 A N6 A 6 1_555 A U 88 A O4 U 88 1_555 hydrog WATSON-CRICK A U 7 A N3 U 7 1_555 A A 87 A N1 A 87 1_555 hydrog WATSON-CRICK A U 7 A O4 U 7 1_555 A A 87 A N6 A 87 1_555 hydrog WATSON-CRICK A C 8 A N3 C 8 1_555 A G 86 A N1 G 86 1_555 hydrog WATSON-CRICK A C 8 A N4 C 8 1_555 A G 86 A O6 G 86 1_555 hydrog WATSON-CRICK A C 8 A O2 C 8 1_555 A G 86 A N2 G 86 1_555 hydrog G-C PAIR A G 11 A N2 G 11 1_555 A C 44 A O2 C 44 1_555 hydrog A-G MISPAIR A A 12 A N3 A 12 1_555 A G 43 A N2 G 43 1_555 hydrog WATSON-CRICK A G 13 A N1 G 13 1_555 A C 41 A N3 C 41 1_555 hydrog WATSON-CRICK A G 13 A N2 G 13 1_555 A C 41 A O2 C 41 1_555 hydrog WATSON-CRICK A G 13 A O6 G 13 1_555 A C 41 A N4 C 41 1_555 hydrog WATSON-CRICK A G 15 A N1 G 15 1_555 A C 40 A N3 C 40 1_555 hydrog WATSON-CRICK A G 15 A N2 G 15 1_555 A C 40 A O2 C 40 1_555 hydrog WATSON-CRICK A G 15 A O6 G 15 1_555 A C 40 A N4 C 40 1_555 hydrog WATSON-CRICK A G 16 A N1 G 16 1_555 A C 39 A N3 C 39 1_555 hydrog WATSON-CRICK A G 16 A N2 G 16 1_555 A C 39 A O2 C 39 1_555 hydrog WATSON-CRICK A G 16 A O6 G 16 1_555 A C 39 A N4 C 39 1_555 hydrog WATSON-CRICK A G 17 A N1 G 17 1_555 A C 38 A N3 C 38 1_555 hydrog WATSON-CRICK A G 17 A N2 G 17 1_555 A C 38 A O2 C 38 1_555 hydrog WATSON-CRICK A G 17 A O6 G 17 1_555 A C 38 A N4 C 38 1_555 hydrog TYPE_11_PAIR A G 18 A N2 G 18 1_555 A A 37 A N7 A 37 1_555 hydrog TYPE_11_PAIR A G 18 A N3 G 18 1_555 A A 37 A N6 A 37 1_555 hydrog TYPE_11_PAIR A G 19 A N2 G 19 1_555 A A 36 A N7 A 36 1_555 hydrog TYPE_11_PAIR A G 19 A N3 G 19 1_555 A A 36 A N6 A 36 1_555 hydrog TYPE_11_PAIR A A 20 A N6 A 20 1_555 A G 35 A N3 G 35 1_555 hydrog TYPE_11_PAIR A A 20 A N7 A 20 1_555 A G 35 A N2 G 35 1_555 hydrog WATSON-CRICK A G 21 A N1 G 21 1_555 A C 31 A N3 C 31 1_555 hydrog WATSON-CRICK A G 21 A N2 G 21 1_555 A C 31 A O2 C 31 1_555 hydrog WATSON-CRICK A G 21 A O6 G 21 1_555 A C 31 A N4 C 31 1_555 hydrog WATSON-CRICK A C 22 A N3 C 22 1_555 A G 30 A N1 G 30 1_555 hydrog WATSON-CRICK A C 22 A N4 C 22 1_555 A G 30 A O6 G 30 1_555 hydrog WATSON-CRICK A C 22 A O2 C 22 1_555 A G 30 A N2 G 30 1_555 hydrog WATSON-CRICK A G 23 A N1 G 23 1_555 A C 29 A N3 C 29 1_555 hydrog WATSON-CRICK A G 23 A N2 G 23 1_555 A C 29 A O2 C 29 1_555 hydrog WATSON-CRICK A G 23 A O6 G 23 1_555 A C 29 A N4 C 29 1_555 hydrog TYPE_10_PAIR A G 23 A N2 G 23 1_555 A A 62 A N1 A 62 1_555 hydrog TYPE_10_PAIR A G 23 A N3 G 23 1_555 A A 62 A N6 A 62 1_555 hydrog WATSON-CRICK A C 25 A N3 C 25 1_555 A G 68 A N1 G 68 1_555 hydrog WATSON-CRICK A C 25 A N4 C 25 1_555 A G 68 A O6 G 68 1_555 hydrog WATSON-CRICK A C 25 A O2 C 25 1_555 A G 68 A N2 G 68 1_555 hydrog TYPE_16_PAIR A U 26 A N3 U 26 1_555 A U 67 A O2 U 67 1_555 hydrog TYPE_16_PAIR A U 26 A O4 U 26 1_555 A U 67 A N3 U 67 1_555 hydrog WATSON-CRICK A G 27 A N1 G 27 1_555 A C 66 A N3 C 66 1_555 hydrog WATSON-CRICK A G 27 A N2 G 27 1_555 A C 66 A O2 C 66 1_555 hydrog WATSON-CRICK A G 27 A O6 G 27 1_555 A C 66 A N4 C 66 1_555 hydrog WATSON-CRICK A G 28 A N1 G 28 1_555 A C 65 A N3 C 65 1_555 hydrog WATSON-CRICK A G 28 A N2 G 28 1_555 A C 65 A O2 C 65 1_555 hydrog WATSON-CRICK A G 28 A O6 G 28 1_555 A C 65 A N4 C 65 1_555 hydrog G-A MISPAIR A G 30 A N3 G 30 1_555 A A 61 A N6 A 61 1_555 hydrog WATSON-CRICK A G 42 A N1 G 42 1_555 A C 60 A N3 C 60 1_555 hydrog WATSON-CRICK A G 42 A N2 G 42 1_555 A C 60 A O2 C 60 1_555 hydrog WATSON-CRICK A G 42 A O6 G 42 1_555 A C 60 A N4 C 60 1_555 hydrog WATSON-CRICK A G 43 A N1 G 43 1_555 A C 59 A N3 C 59 1_555 hydrog WATSON-CRICK A G 43 A N2 G 43 1_555 A C 59 A O2 C 59 1_555 hydrog WATSON-CRICK A G 43 A O6 G 43 1_555 A C 59 A N4 C 59 1_555 hydrog WATSON-CRICK A C 44 A N3 C 44 1_555 A G 58 A N1 G 58 1_555 hydrog WATSON-CRICK A C 44 A N4 C 44 1_555 A G 58 A O6 G 58 1_555 hydrog WATSON-CRICK A C 44 A O2 C 44 1_555 A G 58 A N2 G 58 1_555 hydrog WATSON-CRICK A C 47 A N3 C 47 1_555 A G 56 A N1 G 56 1_555 hydrog WATSON-CRICK A C 47 A N4 C 47 1_555 A G 56 A O6 G 56 1_555 hydrog WATSON-CRICK A C 47 A O2 C 47 1_555 A G 56 A N2 G 56 1_555 hydrog WATSON-CRICK A C 48 A N3 C 48 1_555 A G 55 A N1 G 55 1_555 hydrog WATSON-CRICK A C 48 A N4 C 48 1_555 A G 55 A O6 G 55 1_555 hydrog WATSON-CRICK A C 48 A O2 C 48 1_555 A G 55 A N2 G 55 1_555 hydrog WATSON-CRICK A A 49 A N1 A 49 1_555 A U 54 A N3 U 54 1_555 hydrog WATSON-CRICK A A 49 A N6 A 49 1_555 A U 54 A O4 U 54 1_555 hydrog WATSON-CRICK A U 64 A N3 U 64 1_555 A A 85 A N1 A 85 1_555 hydrog WATSON-CRICK A U 64 A O4 U 64 1_555 A A 85 A N6 A 85 1_555 hydrog WATSON-CRICK A C 69 A N3 C 69 1_555 A G 82 A N1 G 82 1_555 hydrog WATSON-CRICK A C 69 A N4 C 69 1_555 A G 82 A O6 G 82 1_555 hydrog WATSON-CRICK A C 69 A O2 C 69 1_555 A G 82 A N2 G 82 1_555 hydrog WATSON-CRICK A A 70 A N1 A 70 1_555 A U 81 A N3 U 81 1_555 hydrog WATSON-CRICK A A 70 A N6 A 70 1_555 A U 81 A O4 U 81 1_555 hydrog TYPE_28_PAIR A G 71 A N1 G 71 1_555 A U 80 A O2 U 80 1_555 hydrog TYPE_28_PAIR A G 71 A O6 G 71 1_555 A U 80 A N3 U 80 1_555 hydrog WATSON-CRICK A C 72 A N3 C 72 1_555 A G 79 A N1 G 79 1_555 hydrog WATSON-CRICK A C 72 A N4 C 72 1_555 A G 79 A O6 G 79 1_555 hydrog WATSON-CRICK A C 72 A O2 C 72 1_555 A G 79 A N2 G 79 1_555 hydrog WATSON-CRICK A G 73 A N1 G 73 1_555 A C 78 A N3 C 78 1_555 hydrog WATSON-CRICK A G 73 A N2 G 73 1_555 A C 78 A O2 C 78 1_555 hydrog WATSON-CRICK A G 73 A O6 G 73 1_555 A C 78 A N4 C 78 1_555 hydrog G-A MISPAIR A G 74 A N2 G 74 1_555 A A 77 A N7 A 77 1_555 RNA RNA, RIBOSWITCH, K-TURN 4B5R PDB 1 4B5R 1 94 4B5R 1 94 4B5R A 1 1 94 BINDING SITE FOR RESIDUE SAM A 1095 A SAM 1095 Software 12 BINDING SITE FOR RESIDUE BA A 1096 A BA 1096 Software 2 BINDING SITE FOR RESIDUE K A 1097 A K 1097 Software 3 BINDING SITE FOR RESIDUE K A 1098 A K 1098 Software 1 BINDING SITE FOR RESIDUE BA A 1099 A BA 1099 Software 2 BINDING SITE FOR RESIDUE K A 1100 A K 1100 Software 2 BINDING SITE FOR RESIDUE BA A 1101 A BA 1101 Software 2 BINDING SITE FOR RESIDUE K A 1102 A K 1102 Software 4 BINDING SITE FOR RESIDUE K A 1103 A K 1103 Software 2 BINDING SITE FOR RESIDUE BA A 1104 A BA 1104 Software 2 BINDING SITE FOR RESIDUE BA A 1105 A BA 1105 Software 1 BINDING SITE FOR RESIDUE BA A 1106 A BA 1106 Software 2 BINDING SITE FOR RESIDUE BA A 1107 A BA 1107 Software 1 BINDING SITE FOR RESIDUE BA A 1108 A BA 1108 Software 1 BINDING SITE FOR RESIDUE BA A 1109 A BA 1109 Software 1 BINDING SITE FOR RESIDUE BA A 1110 A BA 1110 Software 2 BINDING SITE FOR RESIDUE BA A 1112 A BA 1112 Software 2 BINDING SITE FOR RESIDUE K A 1113 A K 1113 Software 1 BINDING SITE FOR RESIDUE K A 1114 A K 1114 Software 1 A U 7 A U 7 12 1_555 A C 8 A C 8 12 1_555 A A 10 A A 10 12 1_555 A G 11 A G 11 12 1_555 A A 45 A A 45 12 1_555 A A 46 A A 46 12 1_555 A C 47 A C 47 12 1_555 A U 57 A U 57 12 1_555 A G 58 A G 58 12 1_555 A C 59 A C 59 12 1_555 A U 88 A U 88 12 1_555 A G 89 A G 89 12 1_555 A G 27 A G 27 2 1_555 A G 28 A G 28 2 1_555 A A 10 A A 10 3 1_555 A G 11 A G 11 3 1_555 A A 62 A A 62 3 1_555 A G 50 A G 50 1 1_555 A U 64 A U 64 2 1_555 A U 67 A U 67 2 1_555 A U 81 A U 81 2 1_555 A G 82 A G 82 2 1_555 A G 11 A G 11 2 1_555 A U 64 A U 64 2 1_555 A A 70 A A 70 4 1_555 A G 71 A G 71 4 1_555 A G 79 A G 79 4 1_555 A U 80 A U 80 4 1_555 A A 85 A A 85 2 1_555 A G 86 A G 86 2 1_555 A G 15 A G 15 2 1_555 A G 16 A G 16 2 1_555 A G 74 A G 74 1 1_455 A G 1 A G 1 2 7_555 A BA 1110 Q BA 2 7_555 A G 18 A G 18 1 1_555 A U 88 A U 88 1 1_555 A G 32 A G 32 1 8_554 A G 1 A G 1 2 1_555 A BA 1106 M BA 2 7_555 A G 94 A G 94 2 1_555 A G 94 A G 94 2 7_555 A G 56 A G 56 1 1_555 A G 13 A G 13 1 1_555 96 P 43 21 2