1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Osborne, M.J.
Volpon, L.
Kornblatt, J.A.
Culjkovic-Kraljcic, B.
Baguet, A.
Borden, K.L.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
110
3877
10.1073/PNAS.1216862110
23431134
Eif4E3 Acts as a Tumor Suppressor by Utilizing an Atypical Mode of Methyl-7-Guanosine CAP Recognition.
2013
10.2210/pdb4b6v/pdb
pdb_00004b6v
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
22864.070
EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TYPE 3
1
man
polymer
EIF4E3, EIF-4E TYPE 3, EIF-4E3, EIF4E TYPE 3, EIF4E-3
no
no
MALPPAAAPPGANEPLDKALSALPPEPGGVPLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTS
LPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEIIGVSVSVRDREDVVQV
WNVNASLVGEATVLEKIHQLLPHIAFKAVFYKPHEEHHAFEGGRGKH
MALPPAAAPPGANEPLDKALSALPPEPGGVPLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWSVYNNIPPVTS
LPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAADDEIIGVSVSVRDREDVVQV
WNVNASLVGEATVLEKIHQLLPHIAFKAVFYKPHEEHHAFEGGRGKH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HOUSE MOUSE
sample
10090
MUS MUSCULUS
469008
ESCHERICHIA COLI
BL21(DE3)
PET-15B
PLASMID
database_2
pdbx_database_status
pdbx_nmr_software
repository
Initial release
Database references
Atomic model
Other
Data collection
Database references
Other
1
0
2013-02-27
1
1
2013-03-20
1
2
2016-05-04
1
3
2023-06-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_cs
_pdbx_database_status.status_code_mr
_pdbx_database_status.status_code_nmr_data
_pdbx_nmr_software.name
SOLUTION STRUCTURE OF EIF4E3 IN COMPLEX WITH M7GDP
PDBE
Y
PDBE
2012-08-15
REL
REL
REL
REL
NONE
LEAST RESTRAINT VIOLATION
100
10
NOESY
100
mM
7.3
pH
1.0
atm
293.0
K
XPLOR
1
50MM PHOSPHATE, 100MM NACL, 100UM TCEP, NAN3, 7% D2O
BRUNGER
refinement
X-PLOR
structure solution
Sparky
800
Varian
INOVA
MET
1
n
1
MET
1
A
ALA
2
n
2
ALA
2
A
LEU
3
n
3
LEU
3
A
PRO
4
n
4
PRO
4
A
PRO
5
n
5
PRO
5
A
ALA
6
n
6
ALA
6
A
ALA
7
n
7
ALA
7
A
ALA
8
n
8
ALA
8
A
PRO
9
n
9
PRO
9
A
PRO
10
n
10
PRO
10
A
GLY
11
n
11
GLY
11
A
ALA
12
n
12
ALA
12
A
ASN
13
n
13
ASN
13
A
GLU
14
n
14
GLU
14
A
PRO
15
n
15
PRO
15
A
LEU
16
n
16
LEU
16
A
ASP
17
n
17
ASP
17
A
LYS
18
n
18
LYS
18
A
ALA
19
n
19
ALA
19
A
LEU
20
n
20
LEU
20
A
SER
21
n
21
SER
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
PRO
24
n
24
PRO
24
A
PRO
25
n
25
PRO
25
A
GLU
26
n
26
GLU
26
A
PRO
27
n
27
PRO
27
A
GLY
28
n
28
GLY
28
A
GLY
29
n
29
GLY
29
A
VAL
30
n
30
VAL
30
A
PRO
31
n
31
PRO
31
A
LEU
32
n
32
LEU
32
A
HIS
33
n
33
HIS
33
A
SER
34
n
34
SER
34
A
PRO
35
n
35
PRO
35
A
TRP
36
n
36
TRP
36
A
THR
37
n
37
THR
37
A
PHE
38
n
38
PHE
38
A
TRP
39
n
39
TRP
39
A
LEU
40
n
40
LEU
40
A
ASP
41
n
41
ASP
41
A
ARG
42
n
42
ARG
42
A
SER
43
n
43
SER
43
A
LEU
44
n
44
LEU
44
A
PRO
45
n
45
PRO
45
A
GLY
46
n
46
GLY
46
A
ALA
47
n
47
ALA
47
A
THR
48
n
48
THR
48
A
ALA
49
n
49
ALA
49
A
ALA
50
n
50
ALA
50
A
GLU
51
n
51
GLU
51
A
CYS
52
n
52
CYS
52
A
ALA
53
n
53
ALA
53
A
SER
54
n
54
SER
54
A
ASN
55
n
55
ASN
55
A
LEU
56
n
56
LEU
56
A
LYS
57
n
57
LYS
57
A
LYS
58
n
58
LYS
58
A
ILE
59
n
59
ILE
59
A
TYR
60
n
60
TYR
60
A
THR
61
n
61
THR
61
A
VAL
62
n
62
VAL
62
A
GLN
63
n
63
GLN
63
A
THR
64
n
64
THR
64
A
VAL
65
n
65
VAL
65
A
GLN
66
n
66
GLN
66
A
ILE
67
n
67
ILE
67
A
PHE
68
n
68
PHE
68
A
TRP
69
n
69
TRP
69
A
SER
70
n
70
SER
70
A
VAL
71
n
71
VAL
71
A
TYR
72
n
72
TYR
72
A
ASN
73
n
73
ASN
73
A
ASN
74
n
74
ASN
74
A
ILE
75
n
75
ILE
75
A
PRO
76
n
76
PRO
76
A
PRO
77
n
77
PRO
77
A
VAL
78
n
78
VAL
78
A
THR
79
n
79
THR
79
A
SER
80
n
80
SER
80
A
LEU
81
n
81
LEU
81
A
PRO
82
n
82
PRO
82
A
LEU
83
n
83
LEU
83
A
ARG
84
n
84
ARG
84
A
CYS
85
n
85
CYS
85
A
SER
86
n
86
SER
86
A
TYR
87
n
87
TYR
87
A
HIS
88
n
88
HIS
88
A
LEU
89
n
89
LEU
89
A
MET
90
n
90
MET
90
A
ARG
91
n
91
ARG
91
A
GLY
92
n
92
GLY
92
A
GLU
93
n
93
GLU
93
A
ARG
94
n
94
ARG
94
A
ARG
95
n
95
ARG
95
A
PRO
96
n
96
PRO
96
A
LEU
97
n
97
LEU
97
A
TRP
98
n
98
TRP
98
A
GLU
99
n
99
GLU
99
A
GLU
100
n
100
GLU
100
A
GLU
101
n
101
GLU
101
A
SER
102
n
102
SER
102
A
ASN
103
n
103
ASN
103
A
ALA
104
n
104
ALA
104
A
LYS
105
n
105
LYS
105
A
GLY
106
n
106
GLY
106
A
GLY
107
n
107
GLY
107
A
VAL
108
n
108
VAL
108
A
TRP
109
n
109
TRP
109
A
LYS
110
n
110
LYS
110
A
MET
111
n
111
MET
111
A
LYS
112
n
112
LYS
112
A
VAL
113
n
113
VAL
113
A
PRO
114
n
114
PRO
114
A
LYS
115
n
115
LYS
115
A
ASP
116
n
116
ASP
116
A
SER
117
n
117
SER
117
A
THR
118
n
118
THR
118
A
SER
119
n
119
SER
119
A
THR
120
n
120
THR
120
A
VAL
121
n
121
VAL
121
A
TRP
122
n
122
TRP
122
A
LYS
123
n
123
LYS
123
A
GLU
124
n
124
GLU
124
A
LEU
125
n
125
LEU
125
A
LEU
126
n
126
LEU
126
A
LEU
127
n
127
LEU
127
A
ALA
128
n
128
ALA
128
A
THR
129
n
129
THR
129
A
ILE
130
n
130
ILE
130
A
GLY
131
n
131
GLY
131
A
GLU
132
n
132
GLU
132
A
GLN
133
n
133
GLN
133
A
PHE
134
n
134
PHE
134
A
THR
135
n
135
THR
135
A
ASP
136
n
136
ASP
136
A
CYS
137
n
137
CYS
137
A
ALA
138
n
138
ALA
138
A
ALA
139
n
139
ALA
139
A
ALA
140
n
140
ALA
140
A
ASP
141
n
141
ASP
141
A
ASP
142
n
142
ASP
142
A
GLU
143
n
143
GLU
143
A
ILE
144
n
144
ILE
144
A
ILE
145
n
145
ILE
145
A
GLY
146
n
146
GLY
146
A
VAL
147
n
147
VAL
147
A
SER
148
n
148
SER
148
A
VAL
149
n
149
VAL
149
A
SER
150
n
150
SER
150
A
VAL
151
n
151
VAL
151
A
ARG
152
n
152
ARG
152
A
ASP
153
n
153
ASP
153
A
ARG
154
n
154
ARG
154
A
GLU
155
n
155
GLU
155
A
ASP
156
n
156
ASP
156
A
VAL
157
n
157
VAL
157
A
VAL
158
n
158
VAL
158
A
GLN
159
n
159
GLN
159
A
VAL
160
n
160
VAL
160
A
TRP
161
n
161
TRP
161
A
ASN
162
n
162
ASN
162
A
VAL
163
n
163
VAL
163
A
ASN
164
n
164
ASN
164
A
ALA
165
n
165
ALA
165
A
SER
166
n
166
SER
166
A
LEU
167
n
167
LEU
167
A
VAL
168
n
168
VAL
168
A
GLY
169
n
169
GLY
169
A
GLU
170
n
170
GLU
170
A
ALA
171
n
171
ALA
171
A
THR
172
n
172
THR
172
A
VAL
173
n
173
VAL
173
A
LEU
174
n
174
LEU
174
A
GLU
175
n
175
GLU
175
A
LYS
176
n
176
LYS
176
A
ILE
177
n
177
ILE
177
A
HIS
178
n
178
HIS
178
A
GLN
179
n
179
GLN
179
A
LEU
180
n
180
LEU
180
A
LEU
181
n
181
LEU
181
A
PRO
182
n
182
PRO
182
A
HIS
183
n
183
HIS
183
A
ILE
184
n
184
ILE
184
A
ALA
185
n
185
ALA
185
A
PHE
186
n
186
PHE
186
A
LYS
187
n
187
LYS
187
A
ALA
188
n
188
ALA
188
A
VAL
189
n
189
VAL
189
A
PHE
190
n
190
PHE
190
A
TYR
191
n
191
TYR
191
A
LYS
192
n
192
LYS
192
A
PRO
193
n
193
PRO
193
A
HIS
194
n
194
HIS
194
A
GLU
195
n
195
GLU
195
A
GLU
196
n
196
GLU
196
A
HIS
197
n
197
HIS
197
A
HIS
198
n
198
HIS
198
A
ALA
199
n
199
ALA
199
A
PHE
200
n
200
PHE
200
A
GLU
201
n
201
GLU
201
A
GLY
202
n
202
GLY
202
A
GLY
203
n
203
GLY
203
A
ARG
204
n
204
ARG
204
A
GLY
205
n
205
GLY
205
A
LYS
206
n
206
LYS
206
A
HIS
207
n
207
HIS
207
A
software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLN
63
A
O
GLN
63
A
N
LEU
32
A
N
LEU
32
A
N
ASP
41
A
N
ASP
41
A
O
SER
86
A
O
SER
86
A
N
LEU
89
A
N
LEU
89
A
O
VAL
147
A
O
VAL
147
A
N
SER
150
A
N
SER
150
A
O
VAL
157
A
O
VAL
157
A
N
ASN
162
A
N
ASN
162
A
O
GLY
107
A
O
GLY
107
A
N
LYS
110
A
N
LYS
110
A
O
PHE
190
A
O
PHE
190
6
A
A
O
H
LYS
ALA
105
165
1.59
10
A
A
O
H
LYS
ALA
105
165
1.58
1
A
LEU
3
54.38
83.38
1
A
ALA
6
61.83
112.20
1
A
GLU
14
56.33
167.99
1
A
PRO
25
-82.40
32.60
1
A
GLU
26
-47.74
159.96
1
A
LEU
44
-100.12
-61.69
1
A
ASN
55
-87.48
44.80
1
A
TYR
60
179.29
162.89
1
A
LEU
83
-177.10
-35.58
1
A
ARG
84
-81.88
48.57
1
A
CYS
85
-172.35
105.84
1
A
GLU
93
-56.71
102.88
1
A
TRP
98
38.66
31.12
1
A
GLU
170
-101.37
45.45
1
A
ARG
204
42.31
91.96
2
A
LEU
3
62.88
81.74
2
A
ALA
7
56.85
-77.77
2
A
ALA
8
-114.09
72.72
2
A
ASN
13
56.08
96.04
2
A
LYS
18
67.66
-62.86
2
A
ALA
22
-151.31
86.46
2
A
PRO
25
-84.54
32.39
2
A
GLU
26
-47.08
155.10
2
A
ASN
55
-92.40
34.93
2
A
LEU
83
179.11
142.04
2
A
GLU
93
-53.63
107.37
2
A
PRO
96
-79.99
-161.53
2
A
GLU
155
-161.76
-156.44
2
A
GLU
170
-105.25
44.42
2
A
HIS
198
-168.53
-65.47
2
A
LYS
206
49.52
-176.97
3
A
LEU
3
53.23
82.59
3
A
ASN
13
59.18
-84.00
3
A
GLU
14
-171.66
142.38
3
A
ALA
22
-153.21
82.96
3
A
PRO
25
-78.97
33.73
3
A
GLU
26
-47.67
158.11
3
A
ALA
47
75.79
46.47
3
A
ASN
55
-91.84
43.81
3
A
TYR
60
176.15
167.67
3
A
LEU
83
176.30
136.13
3
A
ARG
84
71.77
32.56
3
A
GLU
93
-53.77
94.71
3
A
LEU
97
-114.06
73.55
3
A
ASN
103
-130.25
-37.44
3
A
GLU
170
-101.58
44.67
3
A
LEU
181
-140.30
56.92
3
A
GLU
195
-142.64
16.66
3
A
HIS
198
59.44
82.96
4
A
ALA
8
178.45
77.06
4
A
GLU
14
-175.19
-58.89
4
A
SER
43
56.68
-167.17
4
A
LEU
44
146.67
-61.04
4
A
LEU
83
178.96
-30.16
4
A
ARG
84
-84.40
40.98
4
A
CYS
85
-167.62
115.41
4
A
GLU
93
-55.90
93.34
4
A
ALA
199
-167.61
45.74
5
A
ALA
2
-108.34
79.95
5
A
LEU
16
-155.98
-68.16
5
A
ALA
22
-154.92
86.78
5
A
GLU
26
-46.51
162.03
5
A
TYR
60
177.87
165.30
5
A
LEU
83
-177.27
142.34
5
A
GLU
93
-52.19
109.43
5
A
PRO
96
-70.63
-163.77
5
A
TRP
98
36.66
32.72
5
A
ASN
103
-133.80
-37.49
5
A
ALA
139
-49.55
153.19
5
A
GLU
155
-162.97
-158.54
5
A
GLU
170
-102.67
51.51
5
A
LEU
181
-147.71
57.93
5
A
HIS
198
-173.50
38.73
5
A
GLU
201
57.99
95.60
6
A
ALA
6
67.08
-61.35
6
A
ALA
8
-171.67
80.03
6
A
ALA
12
-171.79
-46.53
6
A
ASN
13
61.46
135.46
6
A
LYS
18
60.99
-71.56
6
A
ALA
22
-151.29
83.64
6
A
PRO
25
-82.88
32.45
6
A
GLU
26
-47.66
156.69
6
A
SER
43
-100.02
79.65
6
A
ALA
47
74.65
44.78
6
A
ASN
55
-94.39
43.73
6
A
TYR
60
169.97
167.70
6
A
PRO
82
-80.79
47.74
6
A
LEU
83
58.08
146.12
6
A
GLU
93
-53.15
94.35
6
A
LEU
97
-103.45
79.86
6
A
GLU
170
-106.60
47.06
6
A
HIS
198
-157.37
-58.48
6
A
ALA
199
-134.53
-61.17
6
A
GLU
201
58.31
-77.33
6
A
LYS
206
51.42
75.06
7
A
LEU
3
-179.30
-59.12
7
A
ALA
6
66.56
-63.25
7
A
ALA
12
58.11
174.76
7
A
ASP
17
49.91
90.37
7
A
ALA
22
-153.71
85.62
7
A
PRO
25
-80.62
33.04
7
A
GLU
26
-48.86
156.55
7
A
ASN
55
-96.87
42.07
7
A
LEU
83
-173.30
-32.72
7
A
CYS
85
-172.47
102.70
7
A
LEU
97
-108.47
77.50
7
A
GLU
170
-101.93
45.06
7
A
HIS
198
63.20
-69.56
7
A
ALA
199
55.71
177.20
8
A
LEU
3
54.88
83.34
8
A
ALA
6
52.55
174.68
8
A
ASP
17
-118.23
-81.31
8
A
PRO
25
-83.43
33.07
8
A
GLU
26
-46.70
156.94
8
A
LEU
44
-59.39
174.22
8
A
ALA
47
54.33
-171.77
8
A
TYR
60
175.38
175.81
8
A
PRO
82
-78.59
49.18
8
A
LEU
83
58.04
148.09
8
A
GLU
93
-53.65
95.30
8
A
PRO
96
-75.51
-166.62
8
A
GLU
155
-153.78
-159.75
9
A
ALA
8
62.82
70.51
9
A
ASP
17
-130.49
-70.24
9
A
PRO
25
-84.47
31.78
9
A
ASN
55
-96.61
35.46
9
A
LEU
81
-52.74
108.24
9
A
ARG
84
170.89
47.46
9
A
CYS
85
-171.42
113.13
9
A
GLU
155
-155.52
-158.03
9
A
PHE
200
57.94
132.62
9
A
LYS
206
57.24
-84.34
10
A
LEU
3
-107.27
79.29
10
A
ALA
7
56.05
116.80
10
A
ALA
8
-109.30
78.29
10
A
GLU
14
173.50
-55.98
10
A
ASP
17
-165.23
-80.59
10
A
PRO
25
-83.88
31.90
10
A
GLU
26
-48.89
165.29
10
A
LEU
44
-125.43
-66.02
10
A
ALA
47
158.70
-47.49
10
A
ASN
55
-92.01
50.25
10
A
LEU
83
-174.24
-29.03
10
A
ARG
84
-84.39
36.34
10
A
CYS
85
-160.81
113.52
10
A
GLU
93
-55.59
88.66
10
A
LEU
97
-103.43
77.73
10
A
GLU
170
-101.07
41.20
The third member of the eIF4E family represses gene expression via a novel mode of recognition of the methyl-7 guanosine cap moiety
1
N
N
A
ASP
17
A
ASP
17
HELX_P
A
ALA
22
A
ALA
22
1
1
6
A
THR
48
A
THR
48
HELX_P
A
ASN
55
A
ASN
55
1
2
8
A
VAL
65
A
VAL
65
HELX_P
A
ILE
75
A
ILE
75
1
3
11
A
PRO
77
A
PRO
77
HELX_P
A
LEU
81
A
LEU
81
5
4
5
A
GLU
100
A
GLU
100
HELX_P
A
GLY
106
A
GLY
106
1
5
7
A
PRO
114
A
PRO
114
HELX_P
A
ASP
116
A
ASP
116
5
6
3
A
SER
117
A
SER
117
HELX_P
A
GLY
131
A
GLY
131
1
7
15
A
GLU
132
A
GLU
132
HELX_P
A
ALA
138
A
ALA
138
1
8
7
A
THR
172
A
THR
172
HELX_P
A
LEU
181
A
LEU
181
1
9
10
TRANSLATION
TRANSLATION, M7G CAP
IF4E3_MOUSE
UNP
1
Q9DBB5
1
207
4B6V
1
207
Q9DBB5
A
1
1
207
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
56
A
LEU
56
A
THR
64
A
THR
64
A
PRO
31
A
PRO
31
A
ASP
41
A
ASP
41
A
SER
86
A
SER
86
A
MET
90
A
MET
90
A
ILE
144
A
ILE
144
A
VAL
151
A
VAL
151
A
ASP
156
A
ASP
156
A
ASN
162
A
ASN
162
A
GLY
107
A
GLY
107
A
VAL
113
A
VAL
113
A
VAL
189
A
VAL
189
A
PRO
193
A
PRO
193
1
P 1