0.022080
0.000000
0.000000
0.000000
0.012080
0.000000
0.000000
0.000000
0.010418
0.00000
0.00000
0.00000
Yates, L.A.
Lumb, C.N.
Brahme, N.N.
Zalyte, R.
Bird, L.E.
De Colibus, L.
Owens, R.J.
Calderwood, D.A.
Sansom, M.S.P.
Gilbert, R.J.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
45.290
82.780
95.990
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
S
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
O
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
R
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
N
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
N
373
N
O
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
doub
N
342
N
sing
Y
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
Y
358
N
doub
Y
359
N
sing
Y
360
N
sing
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
287
43246
10.1074/JBC.M112.422089
23132860
Structural and Functional Characterisation of the Kindlin-1 Pleckstrin Homology Domain
2012
10.2210/pdb4bbk/pdb
pdb_00004bbk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
SI (111) DOUBLE CRYSTAL MONOCHROMATOR. KIRKPATRICK BAEZ BIMORPH MIRROR PAIR FOR HORIZONTAL AND VERTICAL FOCUSSING
CCD
ADSC CCD
DOUBLE CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
0.9745
1.0
I03
Diamond
0.9745
SYNCHROTRON
DIAMOND BEAMLINE I03
18868.938
FERMITIN FAMILY HOMOLOG 1
PLECKSTRIN HOMOLOGY DOMAIN, RESIDUES 178-323
1
man
polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
49
nat
water
KINDLIN-1
no
no
MAHHHHHHSSGLEVLFQGPEDITDIPKLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQGEPIEKLNLRGCE
IVPDVNVSGRKFGIKLLIPVADGMNEVYLRCDHEDQYARWMAACILASKGKTMADSSYQPEVISILSFLKMKNRNSSPLV
ASSLE
MAHHHHHHSSGLEVLFQGPEDITDIPKLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQGEPIEKLNLRGCE
IVPDVNVSGRKFGIKLLIPVADGMNEVYLRCDHEDQYARWMAACILASKGKTMADSSYQPEVISILSFLKMKNRNSSPLV
ASSLE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HOUSE MOUSE
sample
10090
MUS MUSCULUS
469008
ESCHERICHIA COLI
BL21(DE3)
ROSETTA (PLYSS/RARE)
POPINF
PLASMID
1
2.5
51
NONE
7.5
5MG/ML - 12MG/ML IN 20MM TRIS-HCL, PH 7.5, 200MM NACL, 0.5MM TCEP
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2012-11-14
1
1
2012-11-21
1
2
2013-01-16
1
3
2023-12-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBE
Y
PDBE
2012-09-25
REL
REL
GOL
GLYCEROL
HOH
water
SEQUENCE IS A FRAGMENT - THE PH DOMAIN - AND INCLUDES THE
CLONING ARTEFACT HIS6 TAG
2YS3
PDB ENTRY 2YS3
PDB
experimental model
GOL
1498
2
GOL
GOL
1498
A
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
n
1
345
A
n
2
346
A
n
3
347
A
n
4
348
A
n
5
349
A
n
6
350
A
n
7
351
A
n
8
352
A
n
9
353
A
n
10
354
A
n
11
355
A
n
12
356
A
n
13
357
A
n
14
358
A
n
15
359
A
n
16
360
A
n
17
361
A
n
18
362
A
n
19
363
A
n
20
364
A
n
21
365
A
n
22
366
A
n
23
367
A
n
24
368
A
n
25
369
A
PRO
370
n
26
PRO
370
A
LYS
371
n
27
LYS
371
A
LEU
372
n
28
LEU
372
A
ALA
373
n
29
ALA
373
A
ASP
374
n
30
ASP
374
A
TYR
375
n
31
TYR
375
A
LEU
376
n
32
LEU
376
A
LYS
377
n
33
LYS
377
A
LEU
378
n
34
LEU
378
A
PHE
379
n
35
PHE
379
A
ARG
380
n
36
ARG
380
A
n
37
381
A
n
38
382
A
n
39
383
A
n
40
384
A
n
41
385
A
n
42
386
A
n
43
387
A
ALA
388
n
44
ALA
388
A
CYS
389
n
45
CYS
389
A
LYS
390
n
46
LYS
390
A
GLN
391
n
47
GLN
391
A
TYR
392
n
48
TYR
392
A
TRP
393
n
49
TRP
393
A
PHE
394
n
50
PHE
394
A
VAL
395
n
51
VAL
395
A
PHE
396
n
52
PHE
396
A
LYS
397
n
53
LYS
397
A
ASP
398
n
54
ASP
398
A
THR
399
n
55
THR
399
A
SER
400
n
56
SER
400
A
ILE
401
n
57
ILE
401
A
ALA
402
n
58
ALA
402
A
TYR
403
n
59
TYR
403
A
PHE
404
n
60
PHE
404
A
LYS
405
n
61
LYS
405
A
ASN
406
n
62
ASN
406
A
LYS
407
n
63
LYS
407
A
GLU
408
n
64
GLU
408
A
LEU
409
n
65
LEU
409
A
GLU
410
n
66
GLU
410
A
GLN
411
n
67
GLN
411
A
GLY
412
n
68
GLY
412
A
GLU
413
n
69
GLU
413
A
PRO
414
n
70
PRO
414
A
ILE
415
n
71
ILE
415
A
GLU
416
n
72
GLU
416
A
LYS
417
n
73
LYS
417
A
LEU
418
n
74
LEU
418
A
ASN
419
n
75
ASN
419
A
LEU
420
n
76
LEU
420
A
ARG
421
n
77
ARG
421
A
GLY
422
n
78
GLY
422
A
CYS
423
n
79
CYS
423
A
GLU
424
n
80
GLU
424
A
ILE
425
n
81
ILE
425
A
VAL
426
n
82
VAL
426
A
PRO
427
n
83
PRO
427
A
ASP
428
n
84
ASP
428
A
VAL
429
n
85
VAL
429
A
ASN
430
n
86
ASN
430
A
VAL
431
n
87
VAL
431
A
SER
432
n
88
SER
432
A
GLY
433
n
89
GLY
433
A
ARG
434
n
90
ARG
434
A
LYS
435
n
91
LYS
435
A
PHE
436
n
92
PHE
436
A
GLY
437
n
93
GLY
437
A
ILE
438
n
94
ILE
438
A
LYS
439
n
95
LYS
439
A
LEU
440
n
96
LEU
440
A
LEU
441
n
97
LEU
441
A
ILE
442
n
98
ILE
442
A
PRO
443
n
99
PRO
443
A
VAL
444
n
100
VAL
444
A
ALA
445
n
101
ALA
445
A
ASP
446
n
102
ASP
446
A
GLY
447
n
103
GLY
447
A
MET
448
n
104
MET
448
A
ASN
449
n
105
ASN
449
A
GLU
450
n
106
GLU
450
A
VAL
451
n
107
VAL
451
A
TYR
452
n
108
TYR
452
A
LEU
453
n
109
LEU
453
A
ARG
454
n
110
ARG
454
A
CYS
455
n
111
CYS
455
A
ASP
456
n
112
ASP
456
A
HIS
457
n
113
HIS
457
A
GLU
458
n
114
GLU
458
A
ASP
459
n
115
ASP
459
A
GLN
460
n
116
GLN
460
A
TYR
461
n
117
TYR
461
A
ALA
462
n
118
ALA
462
A
ARG
463
n
119
ARG
463
A
TRP
464
n
120
TRP
464
A
MET
465
n
121
MET
465
A
ALA
466
n
122
ALA
466
A
ALA
467
n
123
ALA
467
A
CYS
468
n
124
CYS
468
A
ILE
469
n
125
ILE
469
A
LEU
470
n
126
LEU
470
A
ALA
471
n
127
ALA
471
A
SER
472
n
128
SER
472
A
LYS
473
n
129
LYS
473
A
GLY
474
n
130
GLY
474
A
LYS
475
n
131
LYS
475
A
THR
476
n
132
THR
476
A
MET
477
n
133
MET
477
A
ALA
478
n
134
ALA
478
A
ASP
479
n
135
ASP
479
A
SER
480
n
136
SER
480
A
SER
481
n
137
SER
481
A
TYR
482
n
138
TYR
482
A
GLN
483
n
139
GLN
483
A
PRO
484
n
140
PRO
484
A
GLU
485
n
141
GLU
485
A
VAL
486
n
142
VAL
486
A
ILE
487
n
143
ILE
487
A
SER
488
n
144
SER
488
A
ILE
489
n
145
ILE
489
A
LEU
490
n
146
LEU
490
A
SER
491
n
147
SER
491
A
PHE
492
n
148
PHE
492
A
LEU
493
n
149
LEU
493
A
LYS
494
n
150
LYS
494
A
MET
495
n
151
MET
495
A
LYS
496
n
152
LYS
496
A
ASN
497
n
153
ASN
497
A
n
154
498
A
n
155
499
A
n
156
500
A
n
157
501
A
n
158
502
A
n
159
503
A
n
160
504
A
n
161
505
A
n
162
506
A
n
163
507
A
n
164
508
A
n
165
509
A
4.1069
1.3925
0.0424
0.6937
1.0470
6.5276
-0.4317
-0.3151
0.3691
0.1144
0.0230
0.2141
-0.6568
-1.0810
0.5109
0.2492
0.0844
-0.0460
0.2654
-0.0671
0.3207
refined
-5.8275
-13.4135
-16.6145
X-RAY DIFFRACTION
8.1204
-4.0778
1.4552
5.9013
-3.8921
2.8824
0.3538
-0.2295
-1.8316
-0.3716
-0.9264
0.0664
2.1110
-0.5337
0.3366
0.6782
-0.2188
0.1663
0.4543
0.0750
0.7415
refined
-6.3319
-27.4055
-15.4295
X-RAY DIFFRACTION
4.8852
0.7174
0.0681
1.4696
0.2347
4.3218
-0.0039
-0.1315
0.2546
0.2094
-0.2403
0.4932
-0.1494
-1.9324
0.1017
0.2293
0.0568
0.0766
0.6514
-0.0541
0.3734
refined
-12.8374
-14.5609
-14.2879
X-RAY DIFFRACTION
6.3339
1.6919
-3.1570
1.9312
-0.5674
8.1702
0.0343
-0.6403
-0.0606
0.3374
-0.1453
-0.0129
0.8145
0.2764
0.3765
0.3187
-0.0057
0.0331
0.2105
0.0385
0.2308
refined
0.9335
-21.2398
-6.4586
X-RAY DIFFRACTION
4.6543
1.2119
-0.9650
2.5593
-2.4312
3.0411
-0.6402
-0.3547
-1.1004
0.1143
-0.4228
-0.5651
1.3049
-0.4451
0.7014
0.4501
-0.0780
0.0888
0.2877
0.0064
0.4420
refined
-2.9206
-24.5193
-8.2451
X-RAY DIFFRACTION
3.4124
0.3504
-0.1293
5.3719
1.8472
7.7126
-0.0267
-0.0923
0.3799
0.1798
-0.1944
-0.0575
-0.6474
0.0938
0.1437
0.2319
0.0174
-0.0320
0.1491
0.0059
0.2474
refined
2.8426
-9.3157
-9.2299
X-RAY DIFFRACTION
6.0179
0.5997
-5.0247
5.3180
1.4940
4.9306
0.2595
0.3609
0.2085
-0.4409
0.4111
-1.1615
0.3015
2.2999
0.0551
0.1468
-0.0140
0.0449
1.1089
-0.2110
0.8597
refined
15.4018
-12.9522
-14.9308
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(CHAIN A AND RESID 370:378)
X-RAY DIFFRACTION
2
(CHAIN A AND RESID 379:390)
X-RAY DIFFRACTION
3
(CHAIN A AND RESID 391:418)
X-RAY DIFFRACTION
4
(CHAIN A AND RESID 419:447)
X-RAY DIFFRACTION
5
(CHAIN A AND RESID 448:454)
X-RAY DIFFRACTION
6
(CHAIN A AND RESID 455:489)
X-RAY DIFFRACTION
7
(CHAIN A AND RESID 490:497)
software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
418
A
N
LEU
74
A
O
ILE
401
A
O
ILE
57
A
N
PHE
404
A
N
PHE
60
A
O
TRP
393
A
O
TRP
49
A
N
PHE
396
A
N
PHE
52
A
O
LEU
372
A
O
LEU
28
A
N
PHE
379
A
N
PHE
35
A
O
TYR
452
A
O
TYR
108
A
N
CYS
455
A
N
CYS
111
A
O
PHE
436
A
O
PHE
92
A
N
LEU
441
A
N
LEU
97
A
O
GLU
424
A
O
GLU
80
1
A
HOH
2005
C
HOH
1
A
MET
345
A
MET
1
1
Y
1
A
ALA
346
A
ALA
2
1
Y
1
A
HIS
347
A
HIS
3
1
Y
1
A
HIS
348
A
HIS
4
1
Y
1
A
HIS
349
A
HIS
5
1
Y
1
A
HIS
350
A
HIS
6
1
Y
1
A
HIS
351
A
HIS
7
1
Y
1
A
HIS
352
A
HIS
8
1
Y
1
A
SER
353
A
SER
9
1
Y
1
A
SER
354
A
SER
10
1
Y
1
A
GLY
355
A
GLY
11
1
Y
1
A
LEU
356
A
LEU
12
1
Y
1
A
GLU
357
A
GLU
13
1
Y
1
A
VAL
358
A
VAL
14
1
Y
1
A
LEU
359
A
LEU
15
1
Y
1
A
PHE
360
A
PHE
16
1
Y
1
A
GLN
361
A
GLN
17
1
Y
1
A
GLY
362
A
GLY
18
1
Y
1
A
PRO
363
A
PRO
19
1
Y
1
A
GLU
364
A
GLU
20
1
Y
1
A
ASP
365
A
ASP
21
1
Y
1
A
ILE
366
A
ILE
22
1
Y
1
A
THR
367
A
THR
23
1
Y
1
A
ASP
368
A
ASP
24
1
Y
1
A
ILE
369
A
ILE
25
1
Y
1
A
PRO
381
A
PRO
37
1
Y
1
A
LYS
382
A
LYS
38
1
Y
1
A
LYS
383
A
LYS
39
1
Y
1
A
LEU
384
A
LEU
40
1
Y
1
A
MET
385
A
MET
41
1
Y
1
A
LEU
386
A
LEU
42
1
Y
1
A
LYS
387
A
LYS
43
1
Y
1
A
ARG
498
A
ARG
154
1
Y
1
A
ASN
499
A
ASN
155
1
Y
1
A
SER
500
A
SER
156
1
Y
1
A
SER
501
A
SER
157
1
Y
1
A
PRO
502
A
PRO
158
1
Y
1
A
LEU
503
A
LEU
159
1
Y
1
A
VAL
504
A
VAL
160
1
Y
1
A
ALA
505
A
ALA
161
1
Y
1
A
SER
506
A
SER
162
1
Y
1
A
SER
507
A
SER
163
1
Y
1
A
LEU
508
A
LEU
164
1
Y
1
A
GLU
509
A
GLU
165
1
Y
1
A
A
O
O
HOH
HOH
2015
2016
1.86
1
A
A
NZ
O
LYS
HOH
390
2015
2.19
1
A
ASP
398
59.29
-120.61
42.4
-2.6955
0.0000
0.0000
14.2707
0.0000
-11.5752
A LOOP FROM RESIDUES 381-387 WAS DISORDERED IN THE STRUCTURE AND WAS THEREFORE NOT MODELLED.
0.2131
0.1821
0.1835
2.100
39.732
483
10323
4.7
94.83
0.30
1
1.35
MOLECULAR REPLACEMENT
20.02
0.95
1.20
PDB ENTRY 2YS3
ML
FLAT BULK SOLVENT MODEL
54.389
0.382
2.100
39.732
49
1032
6
0
977
0.008
1011
1.011
1356
14.770
388
0.068
145
0.005
169
0.2266
0.1988
2.4041
169
3213
95.00
0.2284
0.1828
3.0288
161
3256
95.00
0.2030
0.1780
39.7393
153
3371
95.00
32.2
2.10
40.00
4BBK
10324
3.5
0.08
1
13.70
7.0
95.4
0.56
2.10
2.21
3.50
1
7.3
95.2
refinement
PHENIX
(PHENIX.REFINE)
data reduction
iMOSFLM
data scaling
SCALA
phasing
PHASER
Structural and functional characterisation of the kindlin-1 pleckstrin homology domain
1
N
N
2
N
N
3
N
N
A
ASN
406
A
ASN
62
HELX_P
A
GLU
410
A
GLU
66
5
1
5
A
HIS
457
A
HIS
113
HELX_P
A
LYS
473
A
LYS
129
1
2
17
A
SER
481
A
SER
137
HELX_P
A
ASN
497
A
ASN
153
1
3
17
CELL ADHESION
PH DOMAIN, CELL ADHESION
E9Q7J9_MOUSE
UNP
1
E9Q7J9
178
323
4BBK
364
509
E9Q7J9
A
1
20
165
1
expression tag
MET
345
4BBK
A
E9Q7J9
UNP
1
1
expression tag
ALA
346
4BBK
A
E9Q7J9
UNP
2
1
expression tag
HIS
347
4BBK
A
E9Q7J9
UNP
3
1
expression tag
HIS
348
4BBK
A
E9Q7J9
UNP
4
1
expression tag
HIS
349
4BBK
A
E9Q7J9
UNP
5
1
expression tag
HIS
350
4BBK
A
E9Q7J9
UNP
6
1
expression tag
HIS
351
4BBK
A
E9Q7J9
UNP
7
1
expression tag
HIS
352
4BBK
A
E9Q7J9
UNP
8
1
expression tag
SER
353
4BBK
A
E9Q7J9
UNP
9
1
expression tag
SER
354
4BBK
A
E9Q7J9
UNP
10
1
expression tag
GLY
355
4BBK
A
E9Q7J9
UNP
11
1
expression tag
LEU
356
4BBK
A
E9Q7J9
UNP
12
1
expression tag
GLU
357
4BBK
A
E9Q7J9
UNP
13
1
expression tag
VAL
358
4BBK
A
E9Q7J9
UNP
14
1
expression tag
LEU
359
4BBK
A
E9Q7J9
UNP
15
1
expression tag
PHE
360
4BBK
A
E9Q7J9
UNP
16
1
expression tag
GLN
361
4BBK
A
E9Q7J9
UNP
17
1
expression tag
GLY
362
4BBK
A
E9Q7J9
UNP
18
1
expression tag
PRO
363
4BBK
A
E9Q7J9
UNP
19
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
416
A
GLU
72
A
ASN
419
A
ASN
75
A
SER
400
A
SER
56
A
PHE
404
A
PHE
60
A
LYS
390
A
LYS
46
A
LYS
397
A
LYS
53
A
LEU
372
A
LEU
28
A
PHE
379
A
PHE
35
A
GLY
447
A
GLY
103
A
CYS
455
A
CYS
111
A
LYS
435
A
LYS
91
A
VAL
444
A
VAL
100
A
GLU
424
A
GLU
80
A
ASN
430
A
ASN
86
BINDING SITE FOR RESIDUE GOL A 1498
A
GOL
1498
Software
6
A
ILE
425
A
ILE
81
6
8_445
A
VAL
444
A
VAL
100
6
1_555
A
ALA
445
A
ALA
101
6
1_555
A
ASP
446
A
ASP
102
6
1_555
A
HOH
2029
C
HOH
6
8_445
A
HOH
2037
C
HOH
6
1_555
20
C 2 2 21