0.010332
0.000000
0.000000
0.000000
0.010332
0.000000
0.000000
0.000000
0.021063
0.00000
0.00000
0.00000
Beringer, D.X.
Kroon-Batenburg, L.M.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
96.788
96.788
47.477
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.F
1744-3091
69
94
10.1107/S1744309113000286
23385745
The Structure of the Fni-Egf-Like Tandem Domain of Coagulation Factor Xii Solved Using Siras.
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
DYNAMICALLY BENDABLE MIRROR
PIXEL
2010-05-15
DECTRIS PILATUS 6M
LN2 COOLED FIXED-EXIT SI(111) MONOCHROMATOR
SINGLE WAVELENGTH
M
x-ray
1
1.03961
1.0
X06SA
SLS
1.03961
SYNCHROTRON
SLS BEAMLINE X06SA
9538.882
COAGULATION FACTOR XIIA HEAVY CHAIN
3.4.21.38
FNI-EGF, RESIDUES 133-215
1
man
polymer
59.044
ACETATE ION
1
syn
non-polymer
18.015
water
67
nat
water
COAGULATION FACTOR XII, HAGEMAN FACTOR, HAF
no
no
GSEKCFEPQLLRFFHKNEIWYRTEQAAVARCQCKGPDAHCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCD
VDTAA
GSEKCFEPQLLRFFHKNEIWYRTEQAAVARCQCKGPDAHCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCD
VDTAA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
9606
HOMO SAPIENS
4922
KOMAGATAELLA PASTORIS
X-33
PLASMID
PPICZALPHA
1
2.93
58
NONE
8.5
0.1 M TRIS PH 8.5 16-18% PEG4, 0.2 M POTASSIUM ACETATE
software
repository
Initial release
Database references
Other
Structure summary
Database references
Refinement description
1
0
2013-02-13
1
1
2013-02-20
1
2
2013-04-17
1
3
2016-12-28
1
4
2017-07-12
_software.name
THE STRUCTURE OF THE FNI-EGF TANDEM DOMAIN OF COAGULATION FACTOR XII IN COMPLEX WITH HOLMIUM
PDBE
Y
PDBE
2012-10-08
REL
ACT
ACETATE ION
HOH
water
ACT
1085
2
ACT
ACT
1085
A
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
n
1
1
A
SER
2
n
2
SER
2
A
GLU
3
n
3
GLU
3
A
LYS
4
n
4
LYS
4
A
CYS
5
n
5
CYS
5
A
PHE
6
n
6
PHE
6
A
GLU
7
n
7
GLU
7
A
PRO
8
n
8
PRO
8
A
GLN
9
n
9
GLN
9
A
LEU
10
n
10
LEU
10
A
LEU
11
n
11
LEU
11
A
ARG
12
n
12
ARG
12
A
PHE
13
n
13
PHE
13
A
PHE
14
n
14
PHE
14
A
HIS
15
n
15
HIS
15
A
LYS
16
n
16
LYS
16
A
ASN
17
n
17
ASN
17
A
GLU
18
n
18
GLU
18
A
ILE
19
n
19
ILE
19
A
TRP
20
n
20
TRP
20
A
TYR
21
n
21
TYR
21
A
ARG
22
n
22
ARG
22
A
THR
23
n
23
THR
23
A
GLU
24
n
24
GLU
24
A
GLN
25
n
25
GLN
25
A
ALA
26
n
26
ALA
26
A
ALA
27
n
27
ALA
27
A
VAL
28
n
28
VAL
28
A
ALA
29
n
29
ALA
29
A
ARG
30
n
30
ARG
30
A
CYS
31
n
31
CYS
31
A
GLN
32
n
32
GLN
32
A
CYS
33
n
33
CYS
33
A
LYS
34
n
34
LYS
34
A
GLY
35
n
35
GLY
35
A
PRO
36
n
36
PRO
36
A
ASP
37
n
37
ASP
37
A
ALA
38
n
38
ALA
38
A
HIS
39
n
39
HIS
39
A
CYS
40
n
40
CYS
40
A
GLN
41
n
41
GLN
41
A
ARG
42
n
42
ARG
42
A
LEU
43
n
43
LEU
43
A
ALA
44
n
44
ALA
44
A
SER
45
n
45
SER
45
A
GLN
46
n
46
GLN
46
A
ALA
47
n
47
ALA
47
A
CYS
48
n
48
CYS
48
A
ARG
49
n
49
ARG
49
A
THR
50
n
50
THR
50
A
ASN
51
n
51
ASN
51
A
PRO
52
n
52
PRO
52
A
CYS
53
n
53
CYS
53
A
LEU
54
n
54
LEU
54
A
HIS
55
n
55
HIS
55
A
GLY
56
n
56
GLY
56
A
GLY
57
n
57
GLY
57
A
ARG
58
n
58
ARG
58
A
CYS
59
n
59
CYS
59
A
LEU
60
n
60
LEU
60
A
GLU
61
n
61
GLU
61
A
VAL
62
n
62
VAL
62
A
GLU
63
n
63
GLU
63
A
GLY
64
n
64
GLY
64
A
HIS
65
n
65
HIS
65
A
ARG
66
n
66
ARG
66
A
LEU
67
n
67
LEU
67
A
CYS
68
n
68
CYS
68
A
HIS
69
n
69
HIS
69
A
CYS
70
n
70
CYS
70
A
PRO
71
n
71
PRO
71
A
VAL
72
n
72
VAL
72
A
GLY
73
n
73
GLY
73
A
TYR
74
n
74
TYR
74
A
THR
75
n
75
THR
75
A
GLY
76
n
76
GLY
76
A
PRO
77
n
77
PRO
77
A
PHE
78
n
78
PHE
78
A
CYS
79
n
79
CYS
79
A
ASP
80
n
80
ASP
80
A
VAL
81
n
81
VAL
81
A
ASP
82
n
82
ASP
82
A
THR
83
n
83
THR
83
A
ALA
84
n
84
ALA
84
A
n
85
85
A
6.9083
-0.6294
-2.6354
5.1630
-1.3013
8.0043
-0.1330
0.1809
-0.2477
-0.3309
0.0664
0.2356
0.2191
-0.1888
0.0146
0.0688
-0.0247
-0.0030
0.0964
0.0041
0.1860
refined
8.3010
0.5375
-27.8942
X-RAY DIFFRACTION
6.0320
0.3253
6.7825
5.9364
1.1808
7.7451
-0.1949
-1.0260
-0.5061
0.5574
0.0986
-0.8545
0.7426
0.9394
0.0666
0.2466
0.1267
0.0209
0.6146
0.0935
0.3354
refined
18.9673
-1.0174
-20.7072
X-RAY DIFFRACTION
6.6465
2.8384
5.9444
3.0318
1.8114
6.2789
0.0363
0.1331
-1.0651
0.0128
0.1777
-0.5102
0.6167
0.7580
-0.2698
0.1637
0.0556
0.0736
0.3644
-0.0241
0.3649
refined
17.9645
-4.2491
-28.2093
X-RAY DIFFRACTION
5.1613
-0.9658
-2.5780
6.4262
3.7875
7.7874
0.0418
-0.1812
0.3783
-0.5429
-0.3432
-0.4836
-0.8825
0.5697
0.2292
0.2919
-0.0123
-0.0589
0.9134
0.1054
0.2587
refined
24.3892
6.7199
-13.5450
X-RAY DIFFRACTION
2.3172
0.5800
1.1268
0.6483
0.1638
0.5749
0.0075
-0.9339
0.6286
0.2117
-0.6942
0.6374
-0.2765
-0.8927
0.5450
0.3365
0.0417
-0.1389
1.4044
-0.3406
0.4681
refined
11.1923
7.0125
-9.4499
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
CHAIN A AND (RESSEQ 2:18 )
X-RAY DIFFRACTION
2
CHAIN A AND (RESSEQ 19:27 )
X-RAY DIFFRACTION
3
CHAIN A AND (RESSEQ 28:43 )
X-RAY DIFFRACTION
4
CHAIN A AND (RESSEQ 44:69 )
X-RAY DIFFRACTION
5
CHAIN A AND (RESSEQ 70:84 )
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
7
A
N
GLU
7
A
O
ARG
12
A
O
ARG
12
A
N
ARG
22
A
N
ARG
22
A
O
ALA
29
A
O
ALA
29
A
N
GLN
32
A
N
GLN
32
A
O
HIS
39
A
O
HIS
39
A
N
GLN
46
A
N
GLN
46
A
O
GLU
61
A
O
GLU
61
A
N
VAL
62
A
N
VAL
62
A
O
HIS
65
A
O
HIS
65
A
N
THR
75
A
N
THR
75
A
O
VAL
81
A
O
VAL
81
1
A
HOH
2027
C
HOH
1
A
GLY
1
A
GLY
1
1
Y
1
A
ALA
85
A
ALA
85
1
Y
1
A
A
O
O
HOH
HOH
2010
2011
2.09
1
A
A
O
O
HOH
HOH
2031
2061
2.17
1_555
5_553
1
A
ASN
17
84.16
-10.74
1
A
ALA
27
-133.24
-109.34
0.2474
0.2156
0.2171
1.620
48.394
1389
14618
5.1
99.73
0.18
1
1.53
SIRAS
21.58
0.90
1.11
NONE
ML
FLAT BULK SOLVENT MODEL
1.620
48.394
67
724
4
0
653
0.008
709
1.128
953
14.871
264
0.081
95
0.005
131
0.2592
0.2778
1.6780
161
2506
97.00
0.2517
0.2525
1.7451
163
2585
100.00
0.2277
0.2177
1.8246
150
2607
100.00
0.2142
0.2059
1.9208
145
2566
100.00
0.2343
0.2186
2.0411
150
2597
100.00
0.2264
0.2019
2.1987
133
2631
100.00
0.2296
0.2177
2.4200
109
2625
100.00
0.2423
0.2336
2.7701
127
2622
100.00
0.2573
0.2144
3.4899
123
2599
100.00
0.2665
0.2048
48.4156
128
2638
100.00
21.03
1.62
48.39
4BDX
14626
3.5
0.08
1
27.60
23.5
99.7
0.65
1.62
1.65
3.50
1
10.7
96.0
refinement
PHENIX
(PHENIX.REFINE)
data reduction
XDS
data scaling
Aimless
phasing
PHENIX
COAGULATION FACTOR XIIA HEAVY CHAIN (E.C.3.4.21.38)
The structure of the FnI-EGF tandem domain of coagulation factor XII
1
N
N
2
N
N
3
N
N
disulf
2.111
A
A
CYS
5
A
SG
CYS
5
1_555
A
CYS
33
A
SG
CYS
33
1_555
disulf
2.048
A
CYS
31
A
SG
CYS
31
1_555
A
CYS
40
A
SG
CYS
40
1_555
disulf
2.031
A
CYS
48
A
SG
CYS
48
1_555
A
CYS
59
A
SG
CYS
59
1_555
disulf
2.029
A
CYS
53
A
SG
CYS
53
1_555
A
CYS
68
A
SG
CYS
68
1_555
disulf
2.050
A
CYS
70
A
SG
CYS
70
1_555
A
CYS
79
A
SG
CYS
79
1_555
HYDROLASE
HYDROLASE, FNI DOMAIN, EGF DOMAIN
A
ALA
26
A
ALA
26
1
A
ALA
27
A
ALA
27
5.76
A
GLY
35
A
GLY
35
1
A
PRO
36
A
PRO
36
5.96
FA12_HUMAN
UNP
1
P00748
133
213
4BDX
3
83
P00748
A
1
3
83
1
expression tag
GLY
1
4BDX
A
P00748
UNP
1
1
expression tag
SER
2
4BDX
A
P00748
UNP
2
1
ALA
variant
PRO
77
4BDX
A
P00748
UNP
207
77
1
LYS
cloning artifact
ALA
84
4BDX
A
P00748
UNP
214
84
2
3
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
CYS
5
A
CYS
5
A
GLU
7
A
GLU
7
A
ARG
12
A
ARG
12
A
PHE
14
A
PHE
14
A
ILE
19
A
ILE
19
A
THR
23
A
THR
23
A
VAL
28
A
VAL
28
A
CYS
33
A
CYS
33
A
ALA
38
A
ALA
38
A
LEU
43
A
LEU
43
A
GLN
46
A
GLN
46
A
ALA
47
A
ALA
47
A
ARG
58
A
ARG
58
A
VAL
62
A
VAL
62
A
HIS
65
A
HIS
65
A
HIS
69
A
HIS
69
A
TYR
74
A
TYR
74
A
THR
75
A
THR
75
A
VAL
81
A
VAL
81
A
ASP
82
A
ASP
82
BINDING SITE FOR RESIDUE ACT A 1085
Software
3
A
LYS
4
A
LYS
4
3
1_555
A
LYS
4
A
LYS
4
3
10_555
A
HOH
2009
C
HOH
3
1_555
98
I 41 2 2