0.011960 0.006905 0.000000 0.000000 0.013810 0.000000 0.000000 0.000000 0.018105 0.00000 0.00000 0.00000 Rimsa, V. Eadsforth, T.C. Hunter, W.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 83.615 83.615 55.233 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C4 H10 O3 106.120 DI(HYDROXYETHYL)ETHER non-polymer C6 H14 O4 150.173 TRIETHYLENE GLYCOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N C N 89 N O N 90 N C N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 S C N 100 N C N 101 N O N 102 N C N 103 N C N 104 N C N 105 N O N 106 N N N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N C N 125 N O N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 N C N 139 N C N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 N C Y 152 N C Y 153 N N Y 154 N C Y 155 N C Y 156 N N N 157 N O N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N O N 169 N H N 170 N H N 171 N N N 172 S C N 173 N C N 174 N O N 175 S C N 176 N C N 177 N C N 178 N C N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C N 198 N C N 199 N C N 200 N C N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N C N 223 N N N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C N 245 N C N 246 N S N 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N C N 261 N O N 262 N C N 263 N O N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N C N 278 N O N 279 N C N 280 N O N 281 N C N 282 N C N 283 N O N 284 N C N 285 N C N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C Y 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N N N 325 S C N 326 N C N 327 N O N 328 N C N 329 N C N 330 N C N 331 N O N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 N C N 346 N O N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 R C N 360 N O N 361 N C N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N N Y 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C N 386 N O N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N C N 410 N O N 411 N O N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N N N 424 S C N 425 N C N 426 N O N 427 N C N 428 N C N 429 N C N 430 N O N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing Y 149 N sing Y 150 N doub Y 151 N doub N 152 N sing Y 153 N sing N 154 N sing Y 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing Y 296 N doub Y 297 N sing Y 298 N sing N 299 N sing Y 300 N doub N 301 N sing Y 302 N doub N 303 N sing Y 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing Y 365 N doub Y 366 N sing Y 367 N sing N 368 N sing Y 369 N doub Y 370 N sing Y 371 N sing N 372 N sing Y 373 N sing Y 374 N doub N 375 N sing Y 376 N doub N 377 N sing Y 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N doub N 389 N sing N 390 N sing N 391 N sing N 392 N sing Y 393 N doub Y 394 N sing Y 395 N sing N 396 N sing Y 397 N doub N 398 N sing Y 399 N doub N 400 N sing Y 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing US Plos One 1932-6203 8 69538 10.1371/JOURNAL.PONE.0069538 23936039 Structure of the Scan Domain of Human Paternally Expressed Gene 3 Protein. 2013 10.2210/pdb4bhx/pdb pdb_00004bhx 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 287 1 CCD 2013-01-30 RIGAKU CCD SINGLE WAVELENGTH M x-ray 1 1.54 1.0 1.54 ROTATING ANODE RIGAKU MICROMAX-007 HF 11451.426 PATERNALLY-EXPRESSED GENE 3 PROTEIN SCAN DOMAIN, RESIDUES 40-130 2 man polymer 106.120 DI(HYDROXYETHYL)ETHER 4 syn non-polymer 150.173 TRIETHYLENE GLYCOL 2 syn non-polymer 62.068 1,2-ETHANEDIOL 21 syn non-polymer 18.015 water 155 nat water ZINC FINGER AND SCAN DOMAIN-CONTAINING PROTEIN 24 no no GHMTDSEFFHQRFRNLIYVEFVGPRKTLIKLRNLCLDWLQPETRTKEEIIELLVLEQYLTIIPEKLKPWVRAKKPENCEK LVTLLENYKEMYQP GHMTDSEFFHQRFRNLIYVEFVGPRKTLIKLRNLCLDWLQPETRTKEEIIELLVLEQYLTIIPEKLKPWVRAKKPENCEK LVTLLENYKEMYQP A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN sample 9606 HOMO SAPIENS 469008 ESCHERICHIA COLI BL21(DE3) GOLD PET15B PLASMID 1 2.44 49 NONE CRYSTALLIZATION WAS OBSERVED DURING PROTEIN CONCENTRATION USING VIVASPIN 20 CONCENTRATORS (SARTORIUS STEDIM BIOTECH) IN 50 MM TRIS-HCL PH 7.5, 150 MM NACL. diffrn_source chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model struct_site repository Initial release Database references Data collection Data collection Database references Derived calculations Other Refinement description 1 0 2013-04-17 1 1 2013-08-21 1 2 2017-07-05 1 3 2023-12-20 _diffrn_source.type _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id PDBE Y PDBE 2013-04-09 REL REL PEG DI(HYDROXYETHYL)ETHER PGE TRIETHYLENE GLYCOL EDO 1,2-ETHANEDIOL HOH water THE FIRST THREE RESIDUES AT THE N-TERMINUS (GHM) ARE FROM THE HISTIDINE TAG AND REMAINED AFTER TEV DIGESTION. 4E6S PDB ENTRY 4E6S PDB experimental model PEG 1091 2 PEG PEG 1091 A PEG 1092 2 PEG PEG 1092 A PEG 1093 2 PEG PEG 1093 A PGE 1094 3 PGE PGE 1094 A EDO 1095 4 EDO EDO 1095 A EDO 1096 4 EDO EDO 1096 A EDO 1097 4 EDO EDO 1097 A EDO 1098 4 EDO EDO 1098 A EDO 1099 4 EDO EDO 1099 A EDO 1100 4 EDO EDO 1100 A EDO 1101 4 EDO EDO 1101 A EDO 1102 4 EDO EDO 1102 A EDO 1103 4 EDO EDO 1103 A EDO 1104 4 EDO EDO 1104 A EDO 1105 4 EDO EDO 1105 A PEG 1093 2 PEG PEG 1093 B PGE 1094 3 PGE PGE 1094 B EDO 1095 4 EDO EDO 1095 B EDO 1096 4 EDO EDO 1096 B EDO 1097 4 EDO EDO 1097 B EDO 1098 4 EDO EDO 1098 B EDO 1099 4 EDO EDO 1099 B EDO 1100 4 EDO EDO 1100 B EDO 1101 4 EDO EDO 1101 B EDO 1102 4 EDO EDO 1102 B EDO 1103 4 EDO EDO 1103 B EDO 1104 4 EDO EDO 1104 B HOH 2001 5 HOH HOH 2001 A HOH 2002 5 HOH HOH 2002 A HOH 2003 5 HOH HOH 2003 A HOH 2004 5 HOH HOH 2004 A HOH 2005 5 HOH HOH 2005 A HOH 2006 5 HOH HOH 2006 A HOH 2007 5 HOH HOH 2007 A HOH 2008 5 HOH HOH 2008 A HOH 2009 5 HOH HOH 2009 A HOH 2010 5 HOH HOH 2010 A HOH 2011 5 HOH HOH 2011 A HOH 2012 5 HOH HOH 2012 A HOH 2013 5 HOH HOH 2013 A HOH 2014 5 HOH HOH 2014 A HOH 2015 5 HOH HOH 2015 A HOH 2016 5 HOH HOH 2016 A HOH 2017 5 HOH HOH 2017 A HOH 2018 5 HOH HOH 2018 A HOH 2019 5 HOH HOH 2019 A HOH 2020 5 HOH HOH 2020 A HOH 2021 5 HOH HOH 2021 A HOH 2022 5 HOH HOH 2022 A HOH 2023 5 HOH HOH 2023 A HOH 2024 5 HOH HOH 2024 A HOH 2025 5 HOH HOH 2025 A HOH 2026 5 HOH HOH 2026 A HOH 2027 5 HOH HOH 2027 A HOH 2028 5 HOH HOH 2028 A HOH 2029 5 HOH HOH 2029 A HOH 2030 5 HOH HOH 2030 A HOH 2031 5 HOH HOH 2031 A HOH 2032 5 HOH HOH 2032 A HOH 2033 5 HOH HOH 2033 A HOH 2034 5 HOH HOH 2034 A HOH 2035 5 HOH HOH 2035 A HOH 2036 5 HOH HOH 2036 A HOH 2037 5 HOH HOH 2037 A HOH 2038 5 HOH HOH 2038 A HOH 2039 5 HOH HOH 2039 A HOH 2040 5 HOH HOH 2040 A HOH 2041 5 HOH HOH 2041 A HOH 2042 5 HOH HOH 2042 A HOH 2043 5 HOH HOH 2043 A HOH 2044 5 HOH HOH 2044 A HOH 2045 5 HOH HOH 2045 A HOH 2046 5 HOH HOH 2046 A HOH 2047 5 HOH HOH 2047 A HOH 2048 5 HOH HOH 2048 A HOH 2049 5 HOH HOH 2049 A HOH 2050 5 HOH HOH 2050 A HOH 2051 5 HOH HOH 2051 A HOH 2052 5 HOH HOH 2052 A HOH 2053 5 HOH HOH 2053 A HOH 2054 5 HOH HOH 2054 A HOH 2055 5 HOH HOH 2055 A HOH 2056 5 HOH HOH 2056 A HOH 2057 5 HOH HOH 2057 A HOH 2058 5 HOH HOH 2058 A HOH 2059 5 HOH HOH 2059 A HOH 2060 5 HOH HOH 2060 A HOH 2061 5 HOH HOH 2061 A HOH 2062 5 HOH HOH 2062 A HOH 2063 5 HOH HOH 2063 A HOH 2064 5 HOH HOH 2064 A HOH 2065 5 HOH HOH 2065 A HOH 2066 5 HOH HOH 2066 A HOH 2067 5 HOH HOH 2067 A HOH 2068 5 HOH HOH 2068 A HOH 2069 5 HOH HOH 2069 A HOH 2070 5 HOH HOH 2070 A HOH 2071 5 HOH HOH 2071 A HOH 2072 5 HOH HOH 2072 A HOH 2001 5 HOH HOH 2001 B HOH 2002 5 HOH HOH 2002 B HOH 2003 5 HOH HOH 2003 B HOH 2004 5 HOH HOH 2004 B HOH 2005 5 HOH HOH 2005 B HOH 2006 5 HOH HOH 2006 B HOH 2007 5 HOH HOH 2007 B HOH 2008 5 HOH HOH 2008 B HOH 2009 5 HOH HOH 2009 B HOH 2010 5 HOH HOH 2010 B HOH 2011 5 HOH HOH 2011 B HOH 2012 5 HOH HOH 2012 B HOH 2013 5 HOH HOH 2013 B HOH 2014 5 HOH HOH 2014 B HOH 2015 5 HOH HOH 2015 B HOH 2016 5 HOH HOH 2016 B HOH 2017 5 HOH HOH 2017 B HOH 2018 5 HOH HOH 2018 B HOH 2019 5 HOH HOH 2019 B HOH 2020 5 HOH HOH 2020 B HOH 2021 5 HOH HOH 2021 B HOH 2022 5 HOH HOH 2022 B HOH 2023 5 HOH HOH 2023 B HOH 2024 5 HOH HOH 2024 B HOH 2025 5 HOH HOH 2025 B HOH 2026 5 HOH HOH 2026 B HOH 2027 5 HOH HOH 2027 B HOH 2028 5 HOH HOH 2028 B HOH 2029 5 HOH HOH 2029 B HOH 2030 5 HOH HOH 2030 B HOH 2031 5 HOH HOH 2031 B HOH 2032 5 HOH HOH 2032 B HOH 2033 5 HOH HOH 2033 B HOH 2034 5 HOH HOH 2034 B HOH 2035 5 HOH HOH 2035 B HOH 2036 5 HOH HOH 2036 B HOH 2037 5 HOH HOH 2037 B HOH 2038 5 HOH HOH 2038 B HOH 2039 5 HOH HOH 2039 B HOH 2040 5 HOH HOH 2040 B HOH 2041 5 HOH HOH 2041 B HOH 2042 5 HOH HOH 2042 B HOH 2043 5 HOH HOH 2043 B HOH 2044 5 HOH HOH 2044 B HOH 2045 5 HOH HOH 2045 B HOH 2046 5 HOH HOH 2046 B HOH 2047 5 HOH HOH 2047 B HOH 2048 5 HOH HOH 2048 B HOH 2049 5 HOH HOH 2049 B HOH 2050 5 HOH HOH 2050 B HOH 2051 5 HOH HOH 2051 B HOH 2052 5 HOH HOH 2052 B HOH 2053 5 HOH HOH 2053 B HOH 2054 5 HOH HOH 2054 B HOH 2055 5 HOH HOH 2055 B HOH 2056 5 HOH HOH 2056 B HOH 2057 5 HOH HOH 2057 B HOH 2058 5 HOH HOH 2058 B HOH 2059 5 HOH HOH 2059 B HOH 2060 5 HOH HOH 2060 B HOH 2061 5 HOH HOH 2061 B HOH 2062 5 HOH HOH 2062 B HOH 2063 5 HOH HOH 2063 B HOH 2064 5 HOH HOH 2064 B HOH 2065 5 HOH HOH 2065 B HOH 2066 5 HOH HOH 2066 B HOH 2067 5 HOH HOH 2067 B HOH 2068 5 HOH HOH 2068 B HOH 2069 5 HOH HOH 2069 B HOH 2070 5 HOH HOH 2070 B HOH 2071 5 HOH HOH 2071 B HOH 2072 5 HOH HOH 2072 B HOH 2073 5 HOH HOH 2073 B HOH 2074 5 HOH HOH 2074 B HOH 2075 5 HOH HOH 2075 B HOH 2076 5 HOH HOH 2076 B HOH 2077 5 HOH HOH 2077 B HOH 2078 5 HOH HOH 2078 B HOH 2079 5 HOH HOH 2079 B HOH 2080 5 HOH HOH 2080 B HOH 2081 5 HOH HOH 2081 B HOH 2082 5 HOH HOH 2082 B HOH 2083 5 HOH HOH 2083 B n 1 0 A HIS 1 n 2 HIS 1 A MET 2 n 3 MET 2 A THR 3 n 4 THR 3 A ASP 4 n 5 ASP 4 A SER 5 n 6 SER 5 A GLU 6 n 7 GLU 6 A PHE 7 n 8 PHE 7 A PHE 8 n 9 PHE 8 A HIS 9 n 10 HIS 9 A GLN 10 n 11 GLN 10 A ARG 11 n 12 ARG 11 A PHE 12 n 13 PHE 12 A ARG 13 n 14 ARG 13 A ASN 14 n 15 ASN 14 A LEU 15 n 16 LEU 15 A ILE 16 n 17 ILE 16 A TYR 17 n 18 TYR 17 A VAL 18 n 19 VAL 18 A GLU 19 n 20 GLU 19 A PHE 20 n 21 PHE 20 A VAL 21 n 22 VAL 21 A GLY 22 n 23 GLY 22 A PRO 23 n 24 PRO 23 A ARG 24 n 25 ARG 24 A LYS 25 n 26 LYS 25 A THR 26 n 27 THR 26 A LEU 27 n 28 LEU 27 A ILE 28 n 29 ILE 28 A LYS 29 n 30 LYS 29 A LEU 30 n 31 LEU 30 A ARG 31 n 32 ARG 31 A ASN 32 n 33 ASN 32 A LEU 33 n 34 LEU 33 A CYS 34 n 35 CYS 34 A LEU 35 n 36 LEU 35 A ASP 36 n 37 ASP 36 A TRP 37 n 38 TRP 37 A LEU 38 n 39 LEU 38 A GLN 39 n 40 GLN 39 A PRO 40 n 41 PRO 40 A GLU 41 n 42 GLU 41 A THR 42 n 43 THR 42 A ARG 43 n 44 ARG 43 A THR 44 n 45 THR 44 A LYS 45 n 46 LYS 45 A GLU 46 n 47 GLU 46 A GLU 47 n 48 GLU 47 A ILE 48 n 49 ILE 48 A ILE 49 n 50 ILE 49 A GLU 50 n 51 GLU 50 A LEU 51 n 52 LEU 51 A LEU 52 n 53 LEU 52 A VAL 53 n 54 VAL 53 A LEU 54 n 55 LEU 54 A GLU 55 n 56 GLU 55 A GLN 56 n 57 GLN 56 A TYR 57 n 58 TYR 57 A LEU 58 n 59 LEU 58 A THR 59 n 60 THR 59 A ILE 60 n 61 ILE 60 A ILE 61 n 62 ILE 61 A PRO 62 n 63 PRO 62 A GLU 63 n 64 GLU 63 A LYS 64 n 65 LYS 64 A LEU 65 n 66 LEU 65 A LYS 66 n 67 LYS 66 A PRO 67 n 68 PRO 67 A TRP 68 n 69 TRP 68 A VAL 69 n 70 VAL 69 A ARG 70 n 71 ARG 70 A ALA 71 n 72 ALA 71 A LYS 72 n 73 LYS 72 A LYS 73 n 74 LYS 73 A PRO 74 n 75 PRO 74 A GLU 75 n 76 GLU 75 A ASN 76 n 77 ASN 76 A CYS 77 n 78 CYS 77 A GLU 78 n 79 GLU 78 A LYS 79 n 80 LYS 79 A LEU 80 n 81 LEU 80 A VAL 81 n 82 VAL 81 A THR 82 n 83 THR 82 A LEU 83 n 84 LEU 83 A LEU 84 n 85 LEU 84 A GLU 85 n 86 GLU 85 A ASN 86 n 87 ASN 86 A TYR 87 n 88 TYR 87 A LYS 88 n 89 LYS 88 A GLU 89 n 90 GLU 89 A MET 90 n 91 MET 90 A n 92 91 A n 93 92 A n 94 93 A n 1 0 B HIS 1 n 2 HIS 1 B MET 2 n 3 MET 2 B THR 3 n 4 THR 3 B ASP 4 n 5 ASP 4 B SER 5 n 6 SER 5 B GLU 6 n 7 GLU 6 B PHE 7 n 8 PHE 7 B PHE 8 n 9 PHE 8 B HIS 9 n 10 HIS 9 B GLN 10 n 11 GLN 10 B ARG 11 n 12 ARG 11 B PHE 12 n 13 PHE 12 B ARG 13 n 14 ARG 13 B ASN 14 n 15 ASN 14 B LEU 15 n 16 LEU 15 B ILE 16 n 17 ILE 16 B TYR 17 n 18 TYR 17 B VAL 18 n 19 VAL 18 B GLU 19 n 20 GLU 19 B PHE 20 n 21 PHE 20 B VAL 21 n 22 VAL 21 B GLY 22 n 23 GLY 22 B PRO 23 n 24 PRO 23 B ARG 24 n 25 ARG 24 B LYS 25 n 26 LYS 25 B THR 26 n 27 THR 26 B LEU 27 n 28 LEU 27 B ILE 28 n 29 ILE 28 B LYS 29 n 30 LYS 29 B LEU 30 n 31 LEU 30 B ARG 31 n 32 ARG 31 B ASN 32 n 33 ASN 32 B LEU 33 n 34 LEU 33 B CYS 34 n 35 CYS 34 B LEU 35 n 36 LEU 35 B ASP 36 n 37 ASP 36 B TRP 37 n 38 TRP 37 B LEU 38 n 39 LEU 38 B GLN 39 n 40 GLN 39 B PRO 40 n 41 PRO 40 B GLU 41 n 42 GLU 41 B THR 42 n 43 THR 42 B ARG 43 n 44 ARG 43 B THR 44 n 45 THR 44 B LYS 45 n 46 LYS 45 B GLU 46 n 47 GLU 46 B GLU 47 n 48 GLU 47 B ILE 48 n 49 ILE 48 B ILE 49 n 50 ILE 49 B GLU 50 n 51 GLU 50 B LEU 51 n 52 LEU 51 B LEU 52 n 53 LEU 52 B VAL 53 n 54 VAL 53 B LEU 54 n 55 LEU 54 B GLU 55 n 56 GLU 55 B GLN 56 n 57 GLN 56 B TYR 57 n 58 TYR 57 B LEU 58 n 59 LEU 58 B THR 59 n 60 THR 59 B ILE 60 n 61 ILE 60 B ILE 61 n 62 ILE 61 B PRO 62 n 63 PRO 62 B GLU 63 n 64 GLU 63 B LYS 64 n 65 LYS 64 B LEU 65 n 66 LEU 65 B LYS 66 n 67 LYS 66 B PRO 67 n 68 PRO 67 B TRP 68 n 69 TRP 68 B VAL 69 n 70 VAL 69 B ARG 70 n 71 ARG 70 B ALA 71 n 72 ALA 71 B LYS 72 n 73 LYS 72 B LYS 73 n 74 LYS 73 B PRO 74 n 75 PRO 74 B GLU 75 n 76 GLU 75 B ASN 76 n 77 ASN 76 B CYS 77 n 78 CYS 77 B GLU 78 n 79 GLU 78 B LYS 79 n 80 LYS 79 B LEU 80 n 81 LEU 80 B VAL 81 n 82 VAL 81 B THR 82 n 83 THR 82 B LEU 83 n 84 LEU 83 B LEU 84 n 85 LEU 84 B GLU 85 n 86 GLU 85 B ASN 86 n 87 ASN 86 B TYR 87 n 88 TYR 87 B LYS 88 n 89 LYS 88 B GLU 89 n 90 GLU 89 B MET 90 n 91 MET 90 B TYR 91 n 92 TYR 91 B GLN 92 n 93 GLN 92 B n 94 93 B author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A GLY 0 A GLY 1 1 Y 1 A TYR 91 A TYR 92 1 Y 1 A GLN 92 A GLN 93 1 Y 1 A PRO 93 A PRO 94 1 Y 1 B GLY 0 B GLY 1 1 Y 1 B PRO 93 B PRO 94 1 Y 1 -10.51 1.60 100.20 89.69 B B B CG SD CE MET MET MET 90 90 90 N 1 A LYS 73 42.62 72.12 1 A GLU 89 -66.28 91.10 1 B GLU 89 -119.29 68.12 28.167 3.11 0.00 0.00 3.11 0.00 -6.22 0.959 0.933 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 0.22383 0.17151 0.17412 1.95 13.82 806 15239 5.0 99.53 3.489 0.101 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.036 0.033 0.80 0.80 1.20 PDB ENTRY 4E6S MAXIMUM LIKELIHOOD MASK 1.95 13.82 155 1854 132 0 1567 0.018 0.020 1765 0.002 0.020 1832 2.017 2.023 2332 0.961 3.000 4230 5.924 5.000 196 38.025 23.976 83 18.328 15.000 340 23.797 15.000 13 0.120 0.200 253 0.009 0.021 1789 0.001 0.020 372 0.244 0.190 2.003 64 1133 20 99.67 1.95 13.80 4BHX 16090 2.0 0.07 1 38.00 28 99.7 0.31 1.95 2.00 9.70 1 20.8 99.8 refinement REFMAC 5.7.0029 data reduction iMOSFLM data scaling Aimless phasing PHASER Crystal structure of the SCAN domain from human paternally expressed gene 3 protein 1 N N 1 N N 2 N N 2 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 5 N N 5 N N A ASP 4 A ASP 5 HELX_P A LEU 15 A LEU 16 1 1 12 A GLY 22 A GLY 23 HELX_P A GLN 39 A GLN 40 1 2 18 A PRO 40 A PRO 41 HELX_P A ARG 43 A ARG 44 5 3 4 A THR 44 A THR 45 HELX_P A ILE 61 A ILE 62 1 4 18 A PRO 62 A PRO 63 HELX_P A LYS 64 A LYS 65 5 5 3 A LEU 65 A LEU 66 HELX_P A LYS 73 A LYS 74 1 6 9 A ASN 76 A ASN 77 HELX_P A GLU 85 A GLU 86 1 7 10 B ASP 4 B ASP 5 HELX_P B LEU 15 B LEU 16 1 8 12 B VAL 21 B VAL 22 HELX_P B GLN 39 B GLN 40 1 9 19 B PRO 40 B PRO 41 HELX_P B ARG 43 B ARG 44 5 10 4 B THR 44 B THR 45 HELX_P B ILE 61 B ILE 62 1 11 18 B LEU 65 B LEU 66 HELX_P B LYS 73 B LYS 74 1 12 9 B ASN 76 B ASN 77 HELX_P B LYS 88 B LYS 89 1 13 13 DNA BINDING PROTEIN DNA BINDING PROTEIN, PEG3 PEG3_HUMAN UNP 1 Q9GZU2 40 130 4BHX 3 93 Q9GZU2 A 1 4 94 40 130 4BHX 3 93 Q9GZU2 B 1 4 94 1 expression tag GLY 0 4BHX A Q9GZU2 UNP 1 1 expression tag HIS 1 4BHX A Q9GZU2 UNP 2 1 expression tag MET 2 4BHX A Q9GZU2 UNP 3 2 expression tag GLY 0 4BHX B Q9GZU2 UNP 1 2 expression tag HIS 1 4BHX B Q9GZU2 UNP 2 2 expression tag MET 2 4BHX B Q9GZU2 UNP 3 BINDING SITE FOR RESIDUE PEG A 1091 A PEG 1091 Software 6 BINDING SITE FOR RESIDUE PEG A 1092 A PEG 1092 Software 7 BINDING SITE FOR RESIDUE PEG B 1093 B PEG 1093 Software 5 BINDING SITE FOR RESIDUE PEG A 1093 A PEG 1093 Software 6 BINDING SITE FOR RESIDUE PGE B 1094 B PGE 1094 Software 8 BINDING SITE FOR RESIDUE PGE A 1094 A PGE 1094 Software 7 BINDING SITE FOR RESIDUE EDO A 1095 A EDO 1095 Software 4 BINDING SITE FOR RESIDUE EDO B 1095 B EDO 1095 Software 6 BINDING SITE FOR RESIDUE EDO B 1096 B EDO 1096 Software 9 BINDING SITE FOR RESIDUE EDO A 1096 A EDO 1096 Software 5 BINDING SITE FOR RESIDUE EDO B 1097 B EDO 1097 Software 5 BINDING SITE FOR RESIDUE EDO B 1098 B EDO 1098 Software 5 BINDING SITE FOR RESIDUE EDO B 1099 B EDO 1099 Software 5 BINDING SITE FOR RESIDUE EDO B 1100 B EDO 1100 Software 4 BINDING SITE FOR RESIDUE EDO B 1101 B EDO 1101 Software 6 BINDING SITE FOR RESIDUE EDO A 1097 A EDO 1097 Software 3 BINDING SITE FOR RESIDUE EDO A 1098 A EDO 1098 Software 4 BINDING SITE FOR RESIDUE EDO A 1099 A EDO 1099 Software 3 BINDING SITE FOR RESIDUE EDO A 1100 A EDO 1100 Software 6 BINDING SITE FOR RESIDUE EDO A 1101 A EDO 1101 Software 6 BINDING SITE FOR RESIDUE EDO B 1102 B EDO 1102 Software 3 BINDING SITE FOR RESIDUE EDO B 1103 B EDO 1103 Software 2 BINDING SITE FOR RESIDUE EDO B 1104 B EDO 1104 Software 6 BINDING SITE FOR RESIDUE EDO A 1102 A EDO 1102 Software 1 BINDING SITE FOR RESIDUE EDO A 1103 A EDO 1103 Software 2 BINDING SITE FOR RESIDUE EDO A 1104 A EDO 1104 Software 6 BINDING SITE FOR RESIDUE EDO A 1105 A EDO 1105 Software 4 A GLN 56 A GLN 57 6 1_555 A THR 59 A THR 60 6 1_555 A HOH 2065 DA HOH 6 1_555 A HOH 2066 DA HOH 6 1_555 B ARG 13 B ARG 14 6 1_555 B GLU 55 B GLU 56 6 1_555 A HIS 9 A HIS 10 7 1_555 A TRP 37 A TRP 38 7 1_555 A LEU 51 A LEU 52 7 1_555 A LEU 58 A LEU 59 7 1_555 A EDO 1104 P EDO 7 1_555 A EDO 1105 Q EDO 7 1_555 A HOH 2044 DA HOH 7 1_555 B HIS 1 B HIS 2 5 1_555 B THR 42 B THR 43 5 1_555 B ARG 43 B ARG 44 5 1_555 B HOH 2034 EA HOH 5 1_555 B HOH 2036 EA HOH 5 1_555 A TYR 17 A TYR 18 6 1_555 A GLU 19 A GLU 20 6 1_555 A GLY 22 A GLY 23 6 1_555 A PRO 23 A PRO 24 6 1_555 A HOH 2020 DA HOH 6 1_555 B LYS 88 B LYS 89 6 1_555 A EDO 1100 L EDO 8 4_664 B HIS 9 B HIS 10 8 1_555 B TRP 37 B TRP 38 8 1_555 B GLU 55 B GLU 56 8 1_555 B LEU 58 B LEU 59 8 1_555 B THR 59 B THR 60 8 1_555 B HOH 2009 EA HOH 8 1_555 B HOH 2071 EA HOH 8 1_555 A GLN 39 A GLN 40 7 1_555 A THR 42 A THR 43 7 1_555 A ARG 43 A ARG 44 7 1_555 A HOH 2005 DA HOH 7 1_555 A HOH 2040 DA HOH 7 1_555 A HOH 2068 DA HOH 7 1_555 B ARG 70 B ARG 71 7 4_665 A LEU 58 A LEU 59 4 1_555 A LYS 66 A LYS 67 4 1_555 A HOH 2048 DA HOH 4 1_555 A HOH 2069 DA HOH 4 1_555 A LYS 45 A LYS 46 6 1_555 B ARG 43 B ARG 44 6 1_555 B THR 44 B THR 45 6 1_555 B EDO 1097 V EDO 6 1_555 B HOH 2037 EA HOH 6 1_555 B HOH 2073 EA HOH 6 1_555 A THR 59 A THR 60 9 4_665 A GLU 63 A GLU 64 9 4_665 A LYS 66 A LYS 67 9 4_665 A HOH 2047 DA HOH 9 4_665 A HOH 2050 DA HOH 9 4_665 B THR 44 B THR 45 9 1_555 B GLU 46 B GLU 47 9 1_555 B GLU 47 B GLU 48 9 1_555 B HOH 2074 EA HOH 9 1_555 A ASP 4 A ASP 5 5 1_555 A PHE 7 A PHE 8 5 1_555 A EDO 1099 K EDO 5 1_555 B PRO 67 B PRO 68 5 5_565 B ALA 71 B ALA 72 5 5_565 A ARG 13 A ARG 14 5 4_665 A ASN 14 A ASN 15 5 4_665 A LYS 45 A LYS 46 5 1_555 B GLU 41 B GLU 42 5 1_555 B EDO 1095 T EDO 5 1_555 A ASN 32 A ASN 33 5 6_654 A ASP 36 A ASP 37 5 6_654 A HOH 2031 DA HOH 5 6_654 B ASN 86 B ASN 87 5 1_555 B TYR 87 B TYR 88 5 1_555 B ASN 14 B ASN 15 5 1_555 B LEU 15 B LEU 16 5 1_555 B ILE 16 B ILE 17 5 1_555 B HOH 2075 EA HOH 5 1_555 B HOH 2076 EA HOH 5 1_555 A ARG 24 A ARG 25 4 1_555 B THR 82 B THR 83 4 1_555 B GLU 85 B GLU 86 4 1_555 B HOH 2077 EA HOH 4 1_555 A ILE 16 A ILE 17 6 4_665 B LEU 35 B LEU 36 6 1_555 B EDO 1104 CA EDO 6 1_555 B HOH 2078 EA HOH 6 1_555 B HOH 2079 EA HOH 6 1_555 B HOH 2080 EA HOH 6 1_555 A PHE 20 A PHE 21 3 1_555 A LYS 25 A LYS 26 3 1_555 B GLU 89 B GLU 90 3 5_565 A PRO 67 A PRO 68 4 1_555 A ARG 70 A ARG 71 4 1_555 A HOH 2056 DA HOH 4 1_555 B ASP 4 B ASP 5 4 6_554 A ASP 4 A ASP 5 3 1_555 A GLN 10 A GLN 11 3 1_555 A EDO 1096 H EDO 3 1_555 A GLU 41 A GLU 42 6 1_555 A ARG 43 A ARG 44 6 1_555 A HOH 2070 DA HOH 6 1_555 B ASN 14 B ASN 15 6 4_665 B LYS 45 B LYS 46 6 1_555 B PGE 1094 S PGE 6 4_665 A ASN 14 A ASN 15 6 1_555 A ILE 16 A ILE 17 6 1_555 A VAL 18 A VAL 19 6 1_555 B TYR 91 B TYR 92 6 5_565 B GLN 92 B GLN 93 6 5_565 B HOH 2069 EA HOH 6 5_565 A ILE 28 A ILE 29 3 6_654 A ASN 32 A ASN 33 3 6_654 B ASN 86 B ASN 87 3 1_555 A GLU 63 A GLU 64 2 4_665 B ASN 76 B ASN 77 2 1_555 A ILE 49 A ILE 50 6 1_555 A GLU 50 A GLU 51 6 1_555 A HOH 2036 DA HOH 6 1_555 B ARG 31 B ARG 32 6 1_555 B LEU 35 B LEU 36 6 1_555 B EDO 1101 Z EDO 6 1_555 A ASN 32 A ASN 33 1 1_555 A MET 2 A MET 3 2 1_555 B LYS 73 B LYS 74 2 5_565 A SER 5 A SER 6 6 1_555 A TRP 37 A TRP 38 6 1_555 A ARG 43 A ARG 44 6 1_555 A LEU 51 A LEU 52 6 1_555 A PEG 1092 D PEG 6 1_555 A EDO 1105 Q EDO 6 1_555 A LEU 54 A LEU 55 4 1_555 A GLU 75 A GLU 76 4 1_555 A PEG 1092 D PEG 4 1_555 A EDO 1104 P EDO 4 1_555 170 P 65