0.010506 0.006066 0.000000 0.000000 0.012132 0.000000 0.000000 0.000000 0.005252 0.00000 0.00000 0.00000 Raposo, B. Dobritzsch, D. Ge, C. Ekman, D. Lindh, I. Foerster, M. Uysal, H. Schneider, G. Holmdahl, R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 95.180 95.180 190.420 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C5 H9 N O3 131.130 n 4-HYDROXYPROLINE HYDROXYPROLINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 N C N 163 R C N 164 N C N 165 N O N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N N N 177 S C N 178 N C N 179 N O N 180 S C N 181 N C N 182 N C N 183 N C N 184 N O N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C N 203 N C N 204 N C N 205 N C N 206 N O N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N N N 221 S C N 222 N C N 223 N O N 224 N C N 225 N C N 226 N C N 227 N C N 228 N N N 229 N O N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N N N 246 S C N 247 N C N 248 N O N 249 N C N 250 N C N 251 N S N 252 N C N 253 N O N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N N N 266 S C N 267 N C N 268 N O N 269 N C Y 270 N C Y 271 N C Y 272 N C Y 273 N C Y 274 N C Y 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N N N 289 S C N 290 N C N 291 N O N 292 N C N 293 N C N 294 N C N 295 N O N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C N 310 N O N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 R C N 324 N O N 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N N N 337 S C N 338 N C N 339 N O N 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N N Y 345 N C Y 346 N C Y 347 N C Y 348 N C Y 349 N C N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N C N 374 N O N 375 N O N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N N N 388 S C N 389 N C N 390 N O N 391 N C N 392 N C N 393 N C N 394 N O N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing Y 264 N doub Y 265 N sing Y 266 N sing N 267 N sing Y 268 N doub N 269 N sing Y 270 N doub N 271 N sing Y 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing Y 333 N doub Y 334 N sing Y 335 N sing N 336 N sing Y 337 N doub Y 338 N sing Y 339 N sing N 340 N sing Y 341 N sing Y 342 N doub N 343 N sing Y 344 N doub N 345 N sing Y 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing Y 361 N doub Y 362 N sing Y 363 N sing N 364 N sing Y 365 N doub N 366 N sing Y 367 N doub N 368 N sing Y 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N doub N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing US J.Exp.Med. JEMEAV 0774 0022-1007 211 405 10.1084/JEM.20130968 24534192 Epitope-Specific Antibody Response is Controlled by Immunoglobulin Vh Polymorphisms. 2014 10.2210/pdb4bkl/pdb pdb_00004bkl 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2010-07-19 ADSC QUANTUM 210 SINGLE WAVELENGTH M x-ray 1 0.975 1.0 ID14-4 ESRF 0.975 SYNCHROTRON ESRF BEAMLINE ID14-4 HEAVY CHAIN CLEAVED BY PAPAIN, EXACT TERMINI UNCLEAR 24689.611 M2139 FAB FRAGMENT HEAVY CHAIN VH AND CH1 1 nat polymer 23963.469 M2139 FAB FRAGMENT LIGHT CHAIN VL AND CL 1 nat polymer TRIPLE-HELICAL SYNTHETIC PEPTIDE, CHAINS CROSSLINKED AT C-TERMINUS, CONTAINS J1-EPITOPE OF COLLAGEN TYPE II FROM MOUSE FLANKED BY GPO REPEATS 3314.599 J1 EPITOPE 3 syn polymer no no QVQLQQSGAELAKPGTSVKMSCKASGYTFISYWMNWVKQRPGQGLEWIGAINPSDGYTEYNQKFKDKAIMTADRSSSTAY MQLSSLTSEDSALYYCARYGGYFDYWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWSSG SLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEPSGPISTINPCPPCKEC QVQLQQSGAELAKPGTSVKMSCKASGYTFISYWMNWVKQRPGQGLEWIGAINPSDGYTEYNQKFKDKAIMTADRSSSTAY MQLSSLTSEDSALYYCARYGGYFDYWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWSSG SLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEPSGPISTINPCPPCKEC A polypeptide(L) no no DIVLTQSPASLAVSLGQRATISCRASESVEYFGTSLMQWYQQKPGQPPKLLIYAASNVESGVPARFSGSGSGTDFSLNIH PVEEDDIAMYFCQQSREVPYTFGGGSKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC DIVLTQSPASLAVSLGQRATISCRASESVEYFGTSLMQWYQQKPGQPPKLLIYAASNVESGVPARFSGSGSGTDFSLNIH PVEEDDIAMYFCQQSREVPYTFGGGSKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC B polypeptide(L) no yes GP(HYP)GP(HYP)GP(HYP)GP(HYP)GP(HYP)GM(HYP)GERGAAGIAGPKGP(HYP)GP(HYP)G GPPGPPGPPGPPGPPGMPGERGAAGIAGPKGPPGPPG E,F,G polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HOUSE MOUSE sample MURINE HYBRIDOMA (NS0) 10090 MUS MUSCULUS DBA/1 HOUSE MOUSE sample MURINE HYBRIDOMA (NS0) 10090 MUS MUSCULUS DBA/1 1 4.02 69.4 NONE 7.0 1.7 M AMMONIUM SULPHATE, 0.1 M HEPES PH 7.0, 10 % DIOXANE chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model struct_conn struct_ncs_dom_lim repository Initial release Database references Database references Data collection Database references Derived calculations Other Refinement description 1 0 2014-02-05 1 1 2014-03-05 1 2 2014-03-26 1 3 2023-12-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id PDBE Y PDBE 2013-04-26 REL REL 10090 HOUSE MOUSE MUS MUSCULUS sample THE ANTIBODY UNDERWENT SOMATIC MUTATION SEQUENCE IS LARGELY IDENTICAL WITH THAT OF IGHV1-4 THE ANTIBODY UNDERWENT SOMATIC MUTATION SEQUENCE IS LARGELY IDENTICAL WITH THAT OF IGKV3-1 ONE OF THE THREE PEPTIDE CHAINS HAS ADDITIONAL 4 RESIDUES (KKYG) AT THE C-TERMINUS, WHICH CROSSLINKS ALL THREE CHAINS WITH EACH OTHER WE HAVE NO WAY OF KNOWING WHICH OF THE 3 CHAINS E, F OR G IT IS, DUE TO LACK OF ELECTRON DENSITY FOR THE CROSSLINKED END 2Y5T PDB ENTRY 2Y5T PDB experimental model GLN 1 n 1 GLN 1 A VAL 2 n 2 VAL 2 A GLN 3 n 3 GLN 3 A LEU 4 n 4 LEU 4 A GLN 5 n 5 GLN 5 A GLN 6 n 6 GLN 6 A SER 7 n 7 SER 7 A GLY 8 n 8 GLY 8 A ALA 9 n 9 ALA 9 A GLU 10 n 10 GLU 10 A LEU 11 n 11 LEU 11 A ALA 12 n 12 ALA 12 A LYS 13 n 13 LYS 13 A PRO 14 n 14 PRO 14 A GLY 15 n 15 GLY 15 A THR 16 n 16 THR 16 A SER 17 n 17 SER 17 A VAL 18 n 18 VAL 18 A LYS 19 n 19 LYS 19 A MET 20 n 20 MET 20 A SER 21 n 21 SER 21 A CYS 22 n 22 CYS 22 A LYS 23 n 23 LYS 23 A ALA 24 n 24 ALA 24 A SER 25 n 25 SER 25 A GLY 26 n 26 GLY 26 A TYR 27 n 27 TYR 27 A THR 28 n 28 THR 28 A PHE 29 n 29 PHE 29 A ILE 30 n 30 ILE 30 A SER 31 n 31 SER 31 A TYR 32 n 32 TYR 32 A TRP 33 n 33 TRP 33 A MET 34 n 34 MET 34 A ASN 35 n 35 ASN 35 A TRP 36 n 36 TRP 36 A VAL 37 n 37 VAL 37 A LYS 38 n 38 LYS 38 A GLN 39 n 39 GLN 39 A ARG 40 n 40 ARG 40 A PRO 41 n 41 PRO 41 A GLY 42 n 42 GLY 42 A GLN 43 n 43 GLN 43 A GLY 44 n 44 GLY 44 A LEU 45 n 45 LEU 45 A GLU 46 n 46 GLU 46 A TRP 47 n 47 TRP 47 A ILE 48 n 48 ILE 48 A GLY 49 n 49 GLY 49 A ALA 50 n 50 ALA 50 A ILE 51 n 51 ILE 51 A ASN 52 n 52 ASN 52 A PRO 53 n 53 PRO 53 A SER 54 n 54 SER 54 A ASP 55 n 55 ASP 55 A GLY 56 n 56 GLY 56 A TYR 57 n 57 TYR 57 A THR 58 n 58 THR 58 A GLU 59 n 59 GLU 59 A TYR 60 n 60 TYR 60 A ASN 61 n 61 ASN 61 A GLN 62 n 62 GLN 62 A LYS 63 n 63 LYS 63 A PHE 64 n 64 PHE 64 A LYS 65 n 65 LYS 65 A ASP 66 n 66 ASP 66 A LYS 67 n 67 LYS 67 A ALA 68 n 68 ALA 68 A ILE 69 n 69 ILE 69 A MET 70 n 70 MET 70 A THR 71 n 71 THR 71 A ALA 72 n 72 ALA 72 A ASP 73 n 73 ASP 73 A ARG 74 n 74 ARG 74 A SER 75 n 75 SER 75 A SER 76 n 76 SER 76 A SER 77 n 77 SER 77 A THR 78 n 78 THR 78 A ALA 79 n 79 ALA 79 A TYR 80 n 80 TYR 80 A MET 81 n 81 MET 81 A GLN 82 n 82 GLN 82 A LEU 83 n 83 LEU 83 A SER 84 n 84 SER 84 A SER 85 n 85 SER 85 A LEU 86 n 86 LEU 86 A THR 87 n 87 THR 87 A SER 88 n 88 SER 88 A GLU 89 n 89 GLU 89 A ASP 90 n 90 ASP 90 A SER 91 n 91 SER 91 A ALA 92 n 92 ALA 92 A LEU 93 n 93 LEU 93 A TYR 94 n 94 TYR 94 A TYR 95 n 95 TYR 95 A CYS 96 n 96 CYS 96 A ALA 97 n 97 ALA 97 A ARG 98 n 98 ARG 98 A TYR 99 n 99 TYR 99 A GLY 100 n 100 GLY 100 A GLY 101 n 101 GLY 101 A TYR 102 n 102 TYR 102 A PHE 103 n 103 PHE 103 A ASP 104 n 104 ASP 104 A TYR 105 n 105 TYR 105 A TRP 106 n 106 TRP 106 A GLY 107 n 107 GLY 107 A GLN 108 n 108 GLN 108 A GLY 109 n 109 GLY 109 A THR 110 n 110 THR 110 A THR 111 n 111 THR 111 A LEU 112 n 112 LEU 112 A THR 113 n 113 THR 113 A VAL 114 n 114 VAL 114 A SER 115 n 115 SER 115 A SER 116 n 116 SER 116 A ALA 117 n 117 ALA 117 A LYS 118 n 118 LYS 118 A THR 119 n 119 THR 119 A THR 120 n 120 THR 120 A PRO 121 n 121 PRO 121 A PRO 122 n 122 PRO 122 A SER 123 n 123 SER 123 A VAL 124 n 124 VAL 124 A TYR 125 n 125 TYR 125 A PRO 126 n 126 PRO 126 A LEU 127 n 127 LEU 127 A ALA 128 n 128 ALA 128 A PRO 129 n 129 PRO 129 A GLY 130 n 130 GLY 130 A CYS 131 n 131 CYS 131 A GLY 132 n 132 GLY 132 A ASP 133 n 133 ASP 133 A THR 134 n 134 THR 134 A THR 135 n 135 THR 135 A GLY 136 n 136 GLY 136 A SER 137 n 137 SER 137 A SER 138 n 138 SER 138 A VAL 139 n 139 VAL 139 A THR 140 n 140 THR 140 A LEU 141 n 141 LEU 141 A GLY 142 n 142 GLY 142 A CYS 143 n 143 CYS 143 A LEU 144 n 144 LEU 144 A VAL 145 n 145 VAL 145 A LYS 146 n 146 LYS 146 A GLY 147 n 147 GLY 147 A TYR 148 n 148 TYR 148 A PHE 149 n 149 PHE 149 A PRO 150 n 150 PRO 150 A GLU 151 n 151 GLU 151 A SER 152 n 152 SER 152 A VAL 153 n 153 VAL 153 A THR 154 n 154 THR 154 A VAL 155 n 155 VAL 155 A THR 156 n 156 THR 156 A TRP 157 n 157 TRP 157 A SER 158 n 158 SER 158 A SER 159 n 159 SER 159 A GLY 160 n 160 GLY 160 A SER 161 n 161 SER 161 A LEU 162 n 162 LEU 162 A SER 163 n 163 SER 163 A SER 164 n 164 SER 164 A SER 165 n 165 SER 165 A VAL 166 n 166 VAL 166 A HIS 167 n 167 HIS 167 A THR 168 n 168 THR 168 A PHE 169 n 169 PHE 169 A PRO 170 n 170 PRO 170 A ALA 171 n 171 ALA 171 A LEU 172 n 172 LEU 172 A LEU 173 n 173 LEU 173 A GLN 174 n 174 GLN 174 A SER 175 n 175 SER 175 A GLY 176 n 176 GLY 176 A LEU 177 n 177 LEU 177 A TYR 178 n 178 TYR 178 A THR 179 n 179 THR 179 A MET 180 n 180 MET 180 A SER 181 n 181 SER 181 A SER 182 n 182 SER 182 A SER 183 n 183 SER 183 A VAL 184 n 184 VAL 184 A THR 185 n 185 THR 185 A VAL 186 n 186 VAL 186 A PRO 187 n 187 PRO 187 A SER 188 n 188 SER 188 A SER 189 n 189 SER 189 A THR 190 n 190 THR 190 A TRP 191 n 191 TRP 191 A PRO 192 n 192 PRO 192 A SER 193 n 193 SER 193 A GLN 194 n 194 GLN 194 A THR 195 n 195 THR 195 A VAL 196 n 196 VAL 196 A THR 197 n 197 THR 197 A CYS 198 n 198 CYS 198 A SER 199 n 199 SER 199 A VAL 200 n 200 VAL 200 A ALA 201 n 201 ALA 201 A HIS 202 n 202 HIS 202 A PRO 203 n 203 PRO 203 A ALA 204 n 204 ALA 204 A SER 205 n 205 SER 205 A SER 206 n 206 SER 206 A THR 207 n 207 THR 207 A THR 208 n 208 THR 208 A VAL 209 n 209 VAL 209 A ASP 210 n 210 ASP 210 A LYS 211 n 211 LYS 211 A LYS 212 n 212 LYS 212 A LEU 213 n 213 LEU 213 A GLU 214 n 214 GLU 214 A PRO 215 n 215 PRO 215 A SER 216 n 216 SER 216 A n 217 217 A n 218 218 A n 219 219 A n 220 220 A n 221 221 A n 222 222 A n 223 223 A n 224 224 A n 225 225 A n 226 226 A n 227 227 A n 228 228 A n 229 229 A n 230 230 A n 231 231 A ASP 1 n 1 ASP 1 B ILE 2 n 2 ILE 2 B VAL 3 n 3 VAL 3 B LEU 4 n 4 LEU 4 B THR 5 n 5 THR 5 B GLN 6 n 6 GLN 6 B SER 7 n 7 SER 7 B PRO 8 n 8 PRO 8 B ALA 9 n 9 ALA 9 B SER 10 n 10 SER 10 B LEU 11 n 11 LEU 11 B ALA 12 n 12 ALA 12 B VAL 13 n 13 VAL 13 B SER 14 n 14 SER 14 B LEU 15 n 15 LEU 15 B GLY 16 n 16 GLY 16 B GLN 17 n 17 GLN 17 B ARG 18 n 18 ARG 18 B ALA 19 n 19 ALA 19 B THR 20 n 20 THR 20 B ILE 21 n 21 ILE 21 B SER 22 n 22 SER 22 B CYS 23 n 23 CYS 23 B ARG 24 n 24 ARG 24 B ALA 25 n 25 ALA 25 B SER 26 n 26 SER 26 B GLU 27 n 27 GLU 27 B SER 28 n 28 SER 28 B VAL 29 n 29 VAL 29 B GLU 30 n 30 GLU 30 B TYR 31 n 31 TYR 31 B PHE 32 n 32 PHE 32 B GLY 33 n 33 GLY 33 B THR 34 n 34 THR 34 B SER 35 n 35 SER 35 B LEU 36 n 36 LEU 36 B MET 37 n 37 MET 37 B GLN 38 n 38 GLN 38 B TRP 39 n 39 TRP 39 B TYR 40 n 40 TYR 40 B GLN 41 n 41 GLN 41 B GLN 42 n 42 GLN 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B GLY 45 n 45 GLY 45 B GLN 46 n 46 GLN 46 B PRO 47 n 47 PRO 47 B PRO 48 n 48 PRO 48 B LYS 49 n 49 LYS 49 B LEU 50 n 50 LEU 50 B LEU 51 n 51 LEU 51 B ILE 52 n 52 ILE 52 B TYR 53 n 53 TYR 53 B ALA 54 n 54 ALA 54 B ALA 55 n 55 ALA 55 B SER 56 n 56 SER 56 B ASN 57 n 57 ASN 57 B VAL 58 n 58 VAL 58 B GLU 59 n 59 GLU 59 B SER 60 n 60 SER 60 B GLY 61 n 61 GLY 61 B VAL 62 n 62 VAL 62 B PRO 63 n 63 PRO 63 B ALA 64 n 64 ALA 64 B ARG 65 n 65 ARG 65 B PHE 66 n 66 PHE 66 B SER 67 n 67 SER 67 B GLY 68 n 68 GLY 68 B SER 69 n 69 SER 69 B GLY 70 n 70 GLY 70 B SER 71 n 71 SER 71 B GLY 72 n 72 GLY 72 B THR 73 n 73 THR 73 B ASP 74 n 74 ASP 74 B PHE 75 n 75 PHE 75 B SER 76 n 76 SER 76 B LEU 77 n 77 LEU 77 B ASN 78 n 78 ASN 78 B ILE 79 n 79 ILE 79 B HIS 80 n 80 HIS 80 B PRO 81 n 81 PRO 81 B VAL 82 n 82 VAL 82 B GLU 83 n 83 GLU 83 B GLU 84 n 84 GLU 84 B ASP 85 n 85 ASP 85 B ASP 86 n 86 ASP 86 B ILE 87 n 87 ILE 87 B ALA 88 n 88 ALA 88 B MET 89 n 89 MET 89 B TYR 90 n 90 TYR 90 B PHE 91 n 91 PHE 91 B CYS 92 n 92 CYS 92 B GLN 93 n 93 GLN 93 B GLN 94 n 94 GLN 94 B SER 95 n 95 SER 95 B ARG 96 n 96 ARG 96 B GLU 97 n 97 GLU 97 B VAL 98 n 98 VAL 98 B PRO 99 n 99 PRO 99 B TYR 100 n 100 TYR 100 B THR 101 n 101 THR 101 B PHE 102 n 102 PHE 102 B GLY 103 n 103 GLY 103 B GLY 104 n 104 GLY 104 B GLY 105 n 105 GLY 105 B SER 106 n 106 SER 106 B LYS 107 n 107 LYS 107 B LEU 108 n 108 LEU 108 B GLU 109 n 109 GLU 109 B ILE 110 n 110 ILE 110 B LYS 111 n 111 LYS 111 B ARG 112 n 112 ARG 112 B ALA 113 n 113 ALA 113 B ASP 114 n 114 ASP 114 B ALA 115 n 115 ALA 115 B ALA 116 n 116 ALA 116 B PRO 117 n 117 PRO 117 B THR 118 n 118 THR 118 B VAL 119 n 119 VAL 119 B SER 120 n 120 SER 120 B ILE 121 n 121 ILE 121 B PHE 122 n 122 PHE 122 B PRO 123 n 123 PRO 123 B PRO 124 n 124 PRO 124 B SER 125 n 125 SER 125 B SER 126 n 126 SER 126 B GLU 127 n 127 GLU 127 B GLN 128 n 128 GLN 128 B LEU 129 n 129 LEU 129 B THR 130 n 130 THR 130 B SER 131 n 131 SER 131 B GLY 132 n 132 GLY 132 B GLY 133 n 133 GLY 133 B ALA 134 n 134 ALA 134 B SER 135 n 135 SER 135 B VAL 136 n 136 VAL 136 B VAL 137 n 137 VAL 137 B CYS 138 n 138 CYS 138 B PHE 139 n 139 PHE 139 B LEU 140 n 140 LEU 140 B ASN 141 n 141 ASN 141 B ASN 142 n 142 ASN 142 B PHE 143 n 143 PHE 143 B TYR 144 n 144 TYR 144 B PRO 145 n 145 PRO 145 B LYS 146 n 146 LYS 146 B ASP 147 n 147 ASP 147 B ILE 148 n 148 ILE 148 B ASN 149 n 149 ASN 149 B VAL 150 n 150 VAL 150 B LYS 151 n 151 LYS 151 B TRP 152 n 152 TRP 152 B LYS 153 n 153 LYS 153 B ILE 154 n 154 ILE 154 B ASP 155 n 155 ASP 155 B GLY 156 n 156 GLY 156 B SER 157 n 157 SER 157 B GLU 158 n 158 GLU 158 B ARG 159 n 159 ARG 159 B GLN 160 n 160 GLN 160 B ASN 161 n 161 ASN 161 B GLY 162 n 162 GLY 162 B VAL 163 n 163 VAL 163 B LEU 164 n 164 LEU 164 B ASN 165 n 165 ASN 165 B SER 166 n 166 SER 166 B TRP 167 n 167 TRP 167 B THR 168 n 168 THR 168 B ASP 169 n 169 ASP 169 B GLN 170 n 170 GLN 170 B ASP 171 n 171 ASP 171 B SER 172 n 172 SER 172 B LYS 173 n 173 LYS 173 B ASP 174 n 174 ASP 174 B SER 175 n 175 SER 175 B THR 176 n 176 THR 176 B TYR 177 n 177 TYR 177 B SER 178 n 178 SER 178 B MET 179 n 179 MET 179 B SER 180 n 180 SER 180 B SER 181 n 181 SER 181 B THR 182 n 182 THR 182 B LEU 183 n 183 LEU 183 B THR 184 n 184 THR 184 B LEU 185 n 185 LEU 185 B THR 186 n 186 THR 186 B LYS 187 n 187 LYS 187 B ASP 188 n 188 ASP 188 B GLU 189 n 189 GLU 189 B TYR 190 n 190 TYR 190 B GLU 191 n 191 GLU 191 B ARG 192 n 192 ARG 192 B HIS 193 n 193 HIS 193 B ASN 194 n 194 ASN 194 B SER 195 n 195 SER 195 B TYR 196 n 196 TYR 196 B THR 197 n 197 THR 197 B CYS 198 n 198 CYS 198 B GLU 199 n 199 GLU 199 B ALA 200 n 200 ALA 200 B THR 201 n 201 THR 201 B HIS 202 n 202 HIS 202 B LYS 203 n 203 LYS 203 B THR 204 n 204 THR 204 B SER 205 n 205 SER 205 B THR 206 n 206 THR 206 B SER 207 n 207 SER 207 B PRO 208 n 208 PRO 208 B ILE 209 n 209 ILE 209 B VAL 210 n 210 VAL 210 B LYS 211 n 211 LYS 211 B SER 212 n 212 SER 212 B PHE 213 n 213 PHE 213 B ASN 214 n 214 ASN 214 B ARG 215 n 215 ARG 215 B ASN 216 n 216 ASN 216 B n 217 217 B n 218 218 B n 1 1 E n 2 2 E n 3 3 E n 4 4 E n 5 5 E n 6 6 E n 7 7 E n 8 8 E n 9 9 E n 10 10 E PRO 11 n 11 PRO 11 E HYP 12 n 12 HYP 12 E GLY 13 n 13 GLY 13 E PRO 14 n 14 PRO 14 E HYP 15 n 15 HYP 15 E GLY 16 n 16 GLY 16 E MET 17 n 17 MET 17 E HYP 18 n 18 HYP 18 E GLY 19 n 19 GLY 19 E GLU 20 n 20 GLU 20 E ARG 21 n 21 ARG 21 E GLY 22 n 22 GLY 22 E ALA 23 n 23 ALA 23 E ALA 24 n 24 ALA 24 E GLY 25 n 25 GLY 25 E ILE 26 n 26 ILE 26 E ALA 27 n 27 ALA 27 E GLY 28 n 28 GLY 28 E PRO 29 n 29 PRO 29 E LYS 30 n 30 LYS 30 E GLY 31 n 31 GLY 31 E PRO 32 n 32 PRO 32 E HYP 33 n 33 HYP 33 E GLY 34 n 34 GLY 34 E PRO 35 n 35 PRO 35 E n 36 36 E n 37 37 E n 1 1 F n 2 2 F n 3 3 F n 4 4 F n 5 5 F n 6 6 F n 7 7 F n 8 8 F HYP 9 n 9 HYP 9 F GLY 10 n 10 GLY 10 F PRO 11 n 11 PRO 11 F HYP 12 n 12 HYP 12 F GLY 13 n 13 GLY 13 F PRO 14 n 14 PRO 14 F HYP 15 n 15 HYP 15 F GLY 16 n 16 GLY 16 F MET 17 n 17 MET 17 F HYP 18 n 18 HYP 18 F GLY 19 n 19 GLY 19 F GLU 20 n 20 GLU 20 F ARG 21 n 21 ARG 21 F GLY 22 n 22 GLY 22 F ALA 23 n 23 ALA 23 F ALA 24 n 24 ALA 24 F GLY 25 n 25 GLY 25 F ILE 26 n 26 ILE 26 F ALA 27 n 27 ALA 27 F GLY 28 n 28 GLY 28 F PRO 29 n 29 PRO 29 F LYS 30 n 30 LYS 30 F GLY 31 n 31 GLY 31 F PRO 32 n 32 PRO 32 F HYP 33 n 33 HYP 33 F GLY 34 n 34 GLY 34 F n 35 35 F n 36 36 F n 37 37 F n 1 1 G n 2 2 G n 3 3 G n 4 4 G n 5 5 G n 6 6 G n 7 7 G n 8 8 G n 9 9 G GLY 10 n 10 GLY 10 G PRO 11 n 11 PRO 11 G HYP 12 n 12 HYP 12 G GLY 13 n 13 GLY 13 G PRO 14 n 14 PRO 14 G HYP 15 n 15 HYP 15 G GLY 16 n 16 GLY 16 G MET 17 n 17 MET 17 G HYP 18 n 18 HYP 18 G GLY 19 n 19 GLY 19 G GLU 20 n 20 GLU 20 G ARG 21 n 21 ARG 21 G GLY 22 n 22 GLY 22 G ALA 23 n 23 ALA 23 G ALA 24 n 24 ALA 24 G GLY 25 n 25 GLY 25 G ILE 26 n 26 ILE 26 G ALA 27 n 27 ALA 27 G GLY 28 n 28 GLY 28 G PRO 29 n 29 PRO 29 G LYS 30 n 30 LYS 30 G GLY 31 n 31 GLY 31 G PRO 32 n 32 PRO 32 G HYP 33 n 33 HYP 33 G GLY 34 n 34 GLY 34 G n 35 35 G n 36 36 G n 37 37 G author_and_software_defined_assembly PISA 5 pentameric 9720 -50.5 22950 E HYP 12 4-HYDROXYPROLINE C HYP 12 PRO E HYP 15 4-HYDROXYPROLINE C HYP 15 PRO E HYP 18 4-HYDROXYPROLINE C HYP 18 PRO E HYP 33 4-HYDROXYPROLINE C HYP 33 PRO F HYP 9 4-HYDROXYPROLINE D HYP 9 PRO F HYP 12 4-HYDROXYPROLINE D HYP 12 PRO F HYP 15 4-HYDROXYPROLINE D HYP 15 PRO F HYP 18 4-HYDROXYPROLINE D HYP 18 PRO F HYP 33 4-HYDROXYPROLINE D HYP 33 PRO G HYP 12 4-HYDROXYPROLINE E HYP 12 PRO G HYP 15 4-HYDROXYPROLINE E HYP 15 PRO G HYP 18 4-HYDROXYPROLINE E HYP 18 PRO G HYP 33 4-HYDROXYPROLINE E HYP 33 PRO 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLN 5 A N GLN 5 A O LYS 23 A O LYS 23 A N CYS 22 A N CYS 22 A O ALA 79 A O ALA 79 A N GLN 82 A N GLN 82 A O ILE 69 A O ILE 69 A N GLU 10 A N GLU 10 A O THR 111 A O THR 111 A N LEU 112 A N LEU 112 A O ALA 92 A O ALA 92 A N ARG 98 A N ARG 98 A O TYR 105 A O TYR 105 A N GLU 10 A N GLU 10 A O THR 111 A O THR 111 A N LEU 112 A N LEU 112 A O ALA 92 A O ALA 92 A N TYR 99 A N TYR 99 A O TRP 33 A O TRP 33 A N LYS 38 A N LYS 38 A O GLU 46 A O GLU 46 A N ALA 50 A N ALA 50 A O GLU 59 A O GLU 59 A N TYR 105 A N TYR 105 A O ARG 98 A O ARG 98 A N LEU 127 A N LEU 127 A O GLY 142 A O GLY 142 A N GLY 147 A N GLY 147 A O TYR 178 A O TYR 178 A N SER 183 A N SER 183 A O HIS 167 A O HIS 167 A N THR 156 A N THR 156 A O SER 199 A O SER 199 A N HIS 202 A N HIS 202 A O THR 207 A O THR 207 B N SER 7 B N SER 7 B O SER 22 B O SER 22 B N CYS 23 B N CYS 23 B O PHE 75 B O PHE 75 B N ASN 78 B N ASN 78 B O SER 67 B O SER 67 B N LEU 11 B N LEU 11 B O LYS 107 B O LYS 107 B N LEU 108 B N LEU 108 B O ALA 88 B O ALA 88 B N GLN 94 B N GLN 94 B O THR 101 B O THR 101 B N LEU 11 B N LEU 11 B O LYS 107 B O LYS 107 B N LEU 108 B N LEU 108 B O ALA 88 B O ALA 88 B N GLN 93 B N GLN 93 B O GLN 38 B O GLN 38 B N GLN 41 B N GLN 41 B O LYS 49 B O LYS 49 B N TYR 53 B N TYR 53 B O ASN 57 B O ASN 57 B N THR 101 B N THR 101 B O GLN 94 B O GLN 94 B N TYR 31 B N TYR 31 B O THR 34 B O THR 34 B N PHE 122 B N PHE 122 B O VAL 137 B O VAL 137 B N PHE 143 B N PHE 143 B O TYR 177 B O TYR 177 B N THR 182 B N THR 182 B O LEU 164 B O LEU 164 B N SER 157 B N SER 157 B O ILE 154 B O ILE 154 B N LYS 153 B N LYS 153 B O THR 197 B O THR 197 B N HIS 202 B N HIS 202 B O SER 205 B O SER 205 1 A GLY 217 A GLY 217 1 Y 1 A PRO 218 A PRO 218 1 Y 1 A ILE 219 A ILE 219 1 Y 1 A SER 220 A SER 220 1 Y 1 A THR 221 A THR 221 1 Y 1 A ILE 222 A ILE 222 1 Y 1 A ASN 223 A ASN 223 1 Y 1 A PRO 224 A PRO 224 1 Y 1 A CYS 225 A CYS 225 1 Y 1 A PRO 226 A PRO 226 1 Y 1 A PRO 227 A PRO 227 1 Y 1 A CYS 228 A CYS 228 1 Y 1 A LYS 229 A LYS 229 1 Y 1 A GLU 230 A GLU 230 1 Y 1 A CYS 231 A CYS 231 1 Y 1 B GLU 217 B GLU 217 1 Y 1 B CYS 218 B CYS 218 1 Y 1 E GLY 1 C GLY 1 1 Y 1 E PRO 2 C PRO 2 1 Y 1 E HYP 3 C HYP 3 1 Y 1 E GLY 4 C GLY 4 1 Y 1 E PRO 5 C PRO 5 1 Y 1 E HYP 6 C HYP 6 1 Y 1 E GLY 7 C GLY 7 1 Y 1 E PRO 8 C PRO 8 1 Y 1 E HYP 9 C HYP 9 1 Y 1 E GLY 10 C GLY 10 1 Y 1 E HYP 36 C HYP 36 1 Y 1 E GLY 37 C GLY 37 1 Y 1 F GLY 1 D GLY 1 1 Y 1 F PRO 2 D PRO 2 1 Y 1 F HYP 3 D HYP 3 1 Y 1 F GLY 4 D GLY 4 1 Y 1 F PRO 5 D PRO 5 1 Y 1 F HYP 6 D HYP 6 1 Y 1 F GLY 7 D GLY 7 1 Y 1 F PRO 8 D PRO 8 1 Y 1 F PRO 35 D PRO 35 1 Y 1 F HYP 36 D HYP 36 1 Y 1 F GLY 37 D GLY 37 1 Y 1 G GLY 1 E GLY 1 1 Y 1 G PRO 2 E PRO 2 1 Y 1 G HYP 3 E HYP 3 1 Y 1 G GLY 4 E GLY 4 1 Y 1 G PRO 5 E PRO 5 1 Y 1 G HYP 6 E HYP 6 1 Y 1 G GLY 7 E GLY 7 1 Y 1 G PRO 8 E PRO 8 1 Y 1 G HYP 9 E HYP 9 1 Y 1 G PRO 35 E PRO 35 1 Y 1 G HYP 36 E HYP 36 1 Y 1 G GLY 37 E GLY 37 1 Y 1 A VAL 2 -38.30 129.15 1 A CYS 22 -158.40 76.08 1 A SER 88 65.54 -54.56 1 A ALA 92 170.99 -168.26 1 B PHE 32 51.33 -115.86 1 B PRO 44 -36.86 134.86 1 B ALA 55 72.74 -60.53 1 B GLN 170 -47.89 157.26 1 B ASN 194 -121.96 -58.72 117.469 2.42 2.42 0.00 2.42 0.00 -7.86 0.936 0.919 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ONLY ONE OF THE TWO ALTERNATIVE CONFORMATION OF LOOP A158-164 WAS MODELED SEVERAL RESIDUES AT THE C-TERMINUS OF FAB HEAVY AND LIGHT CHAIN AND AT N- AND C-TERMINI OF THE PEPTIDE CHAINS ARE NOT MODELED DUE TO LACK OF ELECTRON DENSITY 0.26270 0.22175 0.22378 3.25 50.00 823 15468 5.1 99.62 21.877 0.348 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 2.289 0.429 0.80 0.80 1.20 PDB ENTRY 2Y5T MAXIMUM LIKELIHOOD MASK 3.25 50.00 0 3770 0 0 3770 0.009 0.020 3879 0.002 0.020 3497 1.556 1.993 5294 1.745 3.002 8147 6.807 5.000 503 34.777 24.348 138 18.317 15.000 576 24.207 15.000 14 0.160 0.200 576 0.007 0.021 4400 0.001 0.020 812 7.076 11.689 2027 7.064 11.688 2026 10.886 17.503 2525 10.885 17.506 2526 6.795 12.102 1852 6.793 12.104 1853 10.820 17.978 2770 16.784 14850 16.783 14848 1 E 1 590 X-RAY DIFFRACTION interatomic distance 0.22 0.05 2 F 1 590 X-RAY DIFFRACTION interatomic distance 0.22 0.05 1 E 2 605 X-RAY DIFFRACTION interatomic distance 0.23 0.05 2 G 2 605 X-RAY DIFFRACTION interatomic distance 0.23 0.05 1 F 3 613 X-RAY DIFFRACTION interatomic distance 0.20 0.05 2 G 3 613 X-RAY DIFFRACTION interatomic distance 0.20 0.05 0.382 0.378 3.334 62 1097 20 98.64 3.25 82.50 4BKL 16327 2.0 0.08 1 13.50 4.7 99.7 0.64 3.25 3.43 2.00 1 4.0 99.4 refinement REFMAC 5.7.0032 data reduction MOSFLM data scaling SCALA phasing PHASER Crystal structure of the arthritogenic antibody M2139 (Fab fragment) in complex with the triple-helical J1 peptide 1 N N 2 N N 3 N N 3 N N 3 N N A GLN 62 A GLN 62 HELX_P A LYS 65 A LYS 65 5 1 4 A PRO 203 A PRO 203 HELX_P A SER 206 A SER 206 5 2 4 B GLU 83 B GLU 83 HELX_P B ILE 87 B ILE 87 5 3 5 B SER 125 B SER 125 HELX_P B GLY 132 B GLY 132 1 4 8 B LYS 187 B LYS 187 HELX_P B HIS 193 B HIS 193 1 5 7 disulf 2.058 A CYS 22 A SG CYS 22 1_555 A CYS 96 A SG CYS 96 1_555 disulf 2.045 A CYS 143 A SG CYS 143 1_555 A CYS 198 A SG CYS 198 1_555 disulf 2.088 B CYS 23 B SG CYS 23 1_555 B CYS 92 B SG CYS 92 1_555 disulf 2.036 B CYS 138 B SG CYS 138 1_555 B CYS 198 B SG CYS 198 1_555 covale 1.347 both E PRO 11 C C PRO 11 1_555 E HYP 12 C N HYP 12 1_555 covale 1.332 both E HYP 12 C C HYP 12 1_555 E GLY 13 C N GLY 13 1_555 covale 1.335 both E PRO 14 C C PRO 14 1_555 E HYP 15 C N HYP 15 1_555 covale 1.333 both E HYP 15 C C HYP 15 1_555 E GLY 16 C N GLY 16 1_555 covale 1.341 both E MET 17 C C MET 17 1_555 E HYP 18 C N HYP 18 1_555 covale 1.333 both E HYP 18 C C HYP 18 1_555 E GLY 19 C N GLY 19 1_555 covale 1.340 both E PRO 32 C C PRO 32 1_555 E HYP 33 C N HYP 33 1_555 covale 1.338 both E HYP 33 C C HYP 33 1_555 E GLY 34 C N GLY 34 1_555 covale 1.336 both F HYP 9 D C HYP 9 1_555 F GLY 10 D N GLY 10 1_555 covale 1.348 both F PRO 11 D C PRO 11 1_555 F HYP 12 D N HYP 12 1_555 covale 1.329 both F HYP 12 D C HYP 12 1_555 F GLY 13 D N GLY 13 1_555 covale 1.343 both F PRO 14 D C PRO 14 1_555 F HYP 15 D N HYP 15 1_555 covale 1.332 both F HYP 15 D C HYP 15 1_555 F GLY 16 D N GLY 16 1_555 covale 1.346 both F MET 17 D C MET 17 1_555 F HYP 18 D N HYP 18 1_555 covale 1.334 both F HYP 18 D C HYP 18 1_555 F GLY 19 D N GLY 19 1_555 covale 1.341 both F PRO 32 D C PRO 32 1_555 F HYP 33 D N HYP 33 1_555 covale 1.333 both F HYP 33 D C HYP 33 1_555 F GLY 34 D N GLY 34 1_555 covale 1.353 both G PRO 11 E C PRO 11 1_555 G HYP 12 E N HYP 12 1_555 covale 1.333 both G HYP 12 E C HYP 12 1_555 G GLY 13 E N GLY 13 1_555 covale 1.344 both G PRO 14 E C PRO 14 1_555 G HYP 15 E N HYP 15 1_555 covale 1.333 both G HYP 15 E C HYP 15 1_555 G GLY 16 E N GLY 16 1_555 covale 1.340 both G MET 17 E C MET 17 1_555 G HYP 18 E N HYP 18 1_555 covale 1.330 both G HYP 18 E C HYP 18 1_555 G GLY 19 E N GLY 19 1_555 covale 1.343 both G PRO 32 E C PRO 32 1_555 G HYP 33 E N HYP 33 1_555 covale 1.330 both G HYP 33 E C HYP 33 1_555 G GLY 34 E N GLY 34 1_555 IMMUNE SYSTEM IMMUNE SYSTEM, ANTIBODY, RHEUMATOID ARTHRITIS, COLLAGEN TYPE II A PHE 149 A PHE 149 1 A PRO 150 A PRO 150 1.06 A TRP 191 A TRP 191 1 A PRO 192 A PRO 192 6.27 B SER 7 B SER 7 1 B PRO 8 B PRO 8 2.84 B HIS 80 B HIS 80 1 B PRO 81 B PRO 81 1.31 B VAL 98 B VAL 98 1 B PRO 99 B PRO 99 -0.08 B TYR 144 B TYR 144 1 B PRO 145 B PRO 145 1.47 E F E G F G E PRO 11 C PRO 11 E HYP 33 C HYP 33 0 F PRO 11 D PRO 11 F HYP 33 D HYP 33 0 E PRO 11 C PRO 11 E HYP 33 C HYP 33 0 G PRO 11 E PRO 11 G HYP 33 E HYP 33 0 F GLY 10 D GLY 10 F HYP 33 D HYP 33 0 G GLY 10 E GLY 10 G HYP 33 E HYP 33 0 4BKL PDB 1 4BKL 4BKL PDB 2 4BKL 4BKL PDB 3 4BKL 1 231 4BKL 1 231 4BKL A 1 1 231 1 218 4BKL 1 218 4BKL B 2 1 218 1 37 4BKL 1 37 4BKL E 3 1 37 1 37 4BKL 1 37 4BKL F 3 1 37 1 37 4BKL 1 37 4BKL G 3 1 37 4 4 6 2 4 3 4 4 6 2 2 4 4 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 3 A GLN 3 A GLN 6 A GLN 6 A VAL 18 A VAL 18 A SER 25 A SER 25 A THR 78 A THR 78 A LEU 83 A LEU 83 A ALA 68 A ALA 68 A ASP 73 A ASP 73 A GLU 10 A GLU 10 A ALA 12 A ALA 12 A THR 110 A THR 110 A VAL 114 A VAL 114 A ALA 92 A ALA 92 A TYR 99 A TYR 99 A TYR 105 A TYR 105 A TRP 106 A TRP 106 A GLU 10 A GLU 10 A ALA 12 A ALA 12 A THR 110 A THR 110 A VAL 114 A VAL 114 A ALA 92 A ALA 92 A TYR 99 A TYR 99 A TRP 33 A TRP 33 A GLN 39 A GLN 39 A LEU 45 A LEU 45 A ILE 51 A ILE 51 A THR 58 A THR 58 A TYR 60 A TYR 60 A TYR 105 A TYR 105 A TRP 106 A TRP 106 A ALA 92 A ALA 92 A TYR 99 A TYR 99 A SER 123 A SER 123 A LEU 127 A LEU 127 A SER 138 A SER 138 A TYR 148 A TYR 148 A LEU 177 A LEU 177 A PRO 187 A PRO 187 A VAL 166 A VAL 166 A GLN 174 A GLN 174 A THR 154 A THR 154 A TRP 157 A TRP 157 A THR 197 A THR 197 A HIS 202 A HIS 202 A THR 207 A THR 207 A LYS 212 A LYS 212 B LEU 4 B LEU 4 B SER 7 B SER 7 B ALA 19 B ALA 19 B ALA 25 B ALA 25 B ASP 74 B ASP 74 B ILE 79 B ILE 79 B PHE 66 B PHE 66 B SER 71 B SER 71 B SER 10 B SER 10 B SER 14 B SER 14 B LYS 107 B LYS 107 B LYS 111 B LYS 111 B ALA 88 B ALA 88 B GLN 94 B GLN 94 B THR 101 B THR 101 B PHE 102 B PHE 102 B SER 10 B SER 10 B SER 14 B SER 14 B LYS 107 B LYS 107 B LYS 111 B LYS 111 B ALA 88 B ALA 88 B GLN 94 B GLN 94 B MET 37 B MET 37 B GLN 42 B GLN 42 B LYS 49 B LYS 49 B TYR 53 B TYR 53 B ASN 57 B ASN 57 B VAL 58 B VAL 58 B THR 101 B THR 101 B PHE 102 B PHE 102 B ALA 88 B ALA 88 B GLN 94 B GLN 94 B GLU 30 B GLU 30 B TYR 31 B TYR 31 B THR 34 B THR 34 B SER 35 B SER 35 B THR 118 B THR 118 B PHE 122 B PHE 122 B GLY 133 B GLY 133 B PHE 143 B PHE 143 B TYR 177 B TYR 177 B THR 186 B THR 186 B VAL 163 B VAL 163 B TRP 167 B TRP 167 B SER 157 B SER 157 B GLU 158 B GLU 158 B ILE 148 B ILE 148 B ILE 154 B ILE 154 B SER 195 B SER 195 B HIS 202 B HIS 202 B SER 205 B SER 205 B ASN 214 B ASN 214 152 P 31 2 1