0.018843
0.000000
0.000000
0.000000
0.012726
0.000000
0.000000
0.000000
0.006445
0.00000
0.00000
0.00000
Figueiredo, A.C.
deSanctis, D.
Pereira, P.J.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
53.071
78.578
155.156
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
NA
N
251
R
C
N
252
R
C
N
253
R
C
N
254
S
C
N
255
R
C
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
N
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
O
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
S
N
336
N
O
N
337
N
O
N
338
N
O
N
339
N
O
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
R
C
N
345
N
O
N
346
N
C
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
N
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
N
395
N
O
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
N
C
N
413
N
C
N
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
Y
278
N
doub
Y
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
doub
N
285
N
sing
Y
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
doub
Y
356
N
sing
Y
357
N
sing
N
358
N
sing
Y
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
Y
379
N
doub
Y
380
N
sing
Y
381
N
sing
N
382
N
sing
Y
383
N
doub
N
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
US
Plos One
1932-6203
8
71866
10.1371/JOURNAL.PONE.0071866
23951260
The Tick-Derived Anticoagulant Madanin is Processed by Thrombin and Factor Xa.
2013
10.2210/pdb4boh/pdb
pdb_00004boh
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
PIXEL
2010-09-30
DECTRIS PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
0.9763
1.0
ID29
ESRF
0.9763
SYNCHROTRON
ESRF BEAMLINE ID29
29780.219
THROMBIN HEAVY CHAIN
3.4.21.5
2
nat
polymer
4096.534
THROMBIN LIGHT CHAIN
3.4.21.5
2
nat
polymer
6781.231
THROMBIN INHIBITOR MADANIN 1
RESIDUES 20-79
1
man
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
2
man
non-polymer
22.990
SODIUM ION
2
syn
non-polymer
96.063
SULFATE ION
5
syn
non-polymer
18.015
water
92
nat
water
ALPHA-THROMBIN, COAGULATION FACTOR II,
ALPHA-THROMBIN, COAGULATION FACTOR II
MADANIN-1
no
no
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
A,H
polypeptide(L)
no
no
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
B,L
polypeptide(L)
no
no
YPERDSAKEGNQEQERALHVKVQKRTDGDADYDEYEEDGTTPTPDPTAPTAKPRLRGNKP
YPERDSAKEGNQEQERALHVKVQKRTDGDADYDEYEEDGTTPTPDPTAPTAKPRLRGNKP
M
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
44386
HAEMAPHYSALIS LONGICORNIS
562
ESCHERICHIA COLI
ER2566
PTYB11
PLASMID
HUMAN
sample
9606
HOMO SAPIENS
PLASMA
HUMAN
sample
9606
HOMO SAPIENS
PLASMA
1
2.18
44
NONE
8.5
0.1M TRIS-HCL PH 8.5, 0.2M LITHIUM SULFATE, 25% (W/V) PEG 3350
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_nonpoly
pdbx_struct_conn_angle
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Data collection
Derived calculations
Other
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2013-09-04
1
1
2020-07-29
1
2
2023-12-20
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_database_status.status_code_sf
_pdbx_entity_nonpoly.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
SHEET
DETERMINATION METHOD: DSSP
THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS
BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY
A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS
ARE IDENTICAL.
THE SHEETS PRESENTED AS "HB" IN EACH CHAIN ON SHEET RECORDS
BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY
A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS
ARE IDENTICAL.
PDBE
Y
PDBE
2013-05-20
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
NA
SODIUM ION
SO4
SULFATE ION
HOH
water
3U69
PDB ENTRY 3U69
PDB
experimental model
NAG
1373
4
NAG
NAG
1373
A
NA
1579
5
NA
NA
1579
A
SO4
1580
6
SO4
SO4
1580
A
SO4
1581
6
SO4
SO4
1581
A
SO4
1582
6
SO4
SO4
1582
A
NAG
1373
4
NAG
NAG
1373
H
NA
1581
5
NA
NA
1581
H
SO4
1582
6
SO4
SO4
1582
H
SO4
1583
6
SO4
SO4
1583
H
HOH
2001
7
HOH
HOH
2001
A
HOH
2002
7
HOH
HOH
2002
A
HOH
2003
7
HOH
HOH
2003
A
HOH
2004
7
HOH
HOH
2004
A
HOH
2005
7
HOH
HOH
2005
A
HOH
2006
7
HOH
HOH
2006
A
HOH
2007
7
HOH
HOH
2007
A
HOH
2008
7
HOH
HOH
2008
A
HOH
2009
7
HOH
HOH
2009
A
HOH
2010
7
HOH
HOH
2010
A
HOH
2011
7
HOH
HOH
2011
A
HOH
2012
7
HOH
HOH
2012
A
HOH
2013
7
HOH
HOH
2013
A
HOH
2014
7
HOH
HOH
2014
A
HOH
2015
7
HOH
HOH
2015
A
HOH
2016
7
HOH
HOH
2016
A
HOH
2017
7
HOH
HOH
2017
A
HOH
2018
7
HOH
HOH
2018
A
HOH
2019
7
HOH
HOH
2019
A
HOH
2020
7
HOH
HOH
2020
A
HOH
2021
7
HOH
HOH
2021
A
HOH
2022
7
HOH
HOH
2022
A
HOH
2023
7
HOH
HOH
2023
A
HOH
2024
7
HOH
HOH
2024
A
HOH
2025
7
HOH
HOH
2025
A
HOH
2026
7
HOH
HOH
2026
A
HOH
2027
7
HOH
HOH
2027
A
HOH
2028
7
HOH
HOH
2028
A
HOH
2029
7
HOH
HOH
2029
A
HOH
2030
7
HOH
HOH
2030
A
HOH
2031
7
HOH
HOH
2031
A
HOH
2032
7
HOH
HOH
2032
A
HOH
2033
7
HOH
HOH
2033
A
HOH
2034
7
HOH
HOH
2034
A
HOH
2035
7
HOH
HOH
2035
A
HOH
2036
7
HOH
HOH
2036
A
HOH
2037
7
HOH
HOH
2037
A
HOH
2038
7
HOH
HOH
2038
A
HOH
2039
7
HOH
HOH
2039
A
HOH
2040
7
HOH
HOH
2040
A
HOH
2041
7
HOH
HOH
2041
A
HOH
2042
7
HOH
HOH
2042
A
HOH
2001
7
HOH
HOH
2001
B
HOH
2002
7
HOH
HOH
2002
B
HOH
2003
7
HOH
HOH
2003
B
HOH
2001
7
HOH
HOH
2001
H
HOH
2002
7
HOH
HOH
2002
H
HOH
2003
7
HOH
HOH
2003
H
HOH
2004
7
HOH
HOH
2004
H
HOH
2005
7
HOH
HOH
2005
H
HOH
2006
7
HOH
HOH
2006
H
HOH
2007
7
HOH
HOH
2007
H
HOH
2008
7
HOH
HOH
2008
H
HOH
2009
7
HOH
HOH
2009
H
HOH
2010
7
HOH
HOH
2010
H
HOH
2011
7
HOH
HOH
2011
H
HOH
2012
7
HOH
HOH
2012
H
HOH
2013
7
HOH
HOH
2013
H
HOH
2014
7
HOH
HOH
2014
H
HOH
2015
7
HOH
HOH
2015
H
HOH
2016
7
HOH
HOH
2016
H
HOH
2017
7
HOH
HOH
2017
H
HOH
2018
7
HOH
HOH
2018
H
HOH
2019
7
HOH
HOH
2019
H
HOH
2020
7
HOH
HOH
2020
H
HOH
2021
7
HOH
HOH
2021
H
HOH
2022
7
HOH
HOH
2022
H
HOH
2023
7
HOH
HOH
2023
H
HOH
2024
7
HOH
HOH
2024
H
HOH
2025
7
HOH
HOH
2025
H
HOH
2026
7
HOH
HOH
2026
H
HOH
2027
7
HOH
HOH
2027
H
HOH
2028
7
HOH
HOH
2028
H
HOH
2029
7
HOH
HOH
2029
H
HOH
2030
7
HOH
HOH
2030
H
HOH
2031
7
HOH
HOH
2031
H
HOH
2032
7
HOH
HOH
2032
H
HOH
2033
7
HOH
HOH
2033
H
HOH
2034
7
HOH
HOH
2034
H
HOH
2035
7
HOH
HOH
2035
H
HOH
2036
7
HOH
HOH
2036
H
HOH
2037
7
HOH
HOH
2037
H
HOH
2038
7
HOH
HOH
2038
H
HOH
2039
7
HOH
HOH
2039
H
HOH
2040
7
HOH
HOH
2040
H
HOH
2041
7
HOH
HOH
2041
H
HOH
2042
7
HOH
HOH
2042
H
HOH
2043
7
HOH
HOH
2043
H
HOH
2044
7
HOH
HOH
2044
H
HOH
2045
7
HOH
HOH
2045
H
HOH
2001
7
HOH
HOH
2001
L
HOH
2002
7
HOH
HOH
2002
L
ILE
321
n
1
ILE
321
A
VAL
322
n
2
VAL
322
A
GLU
323
n
3
GLU
323
A
GLY
324
n
4
GLY
324
A
SER
325
n
5
SER
325
A
ASP
326
n
6
ASP
326
A
ALA
327
n
7
ALA
327
A
GLU
328
n
8
GLU
328
A
ILE
329
n
9
ILE
329
A
GLY
330
n
10
GLY
330
A
MET
331
n
11
MET
331
A
SER
332
n
12
SER
332
A
PRO
333
n
13
PRO
333
A
TRP
334
n
14
TRP
334
A
GLN
335
n
15
GLN
335
A
VAL
336
n
16
VAL
336
A
MET
337
n
17
MET
337
A
LEU
338
n
18
LEU
338
A
PHE
339
n
19
PHE
339
A
ARG
340
n
20
ARG
340
A
LYS
341
n
21
LYS
341
A
SER
342
n
22
SER
342
A
PRO
343
n
23
PRO
343
A
GLN
344
n
24
GLN
344
A
GLU
345
n
25
GLU
345
A
LEU
346
n
26
LEU
346
A
LEU
347
n
27
LEU
347
A
CYS
348
n
28
CYS
348
A
GLY
349
n
29
GLY
349
A
ALA
350
n
30
ALA
350
A
SER
351
n
31
SER
351
A
LEU
352
n
32
LEU
352
A
ILE
353
n
33
ILE
353
A
SER
354
n
34
SER
354
A
ASP
355
n
35
ASP
355
A
ARG
356
n
36
ARG
356
A
TRP
357
n
37
TRP
357
A
VAL
358
n
38
VAL
358
A
LEU
359
n
39
LEU
359
A
THR
360
n
40
THR
360
A
ALA
361
n
41
ALA
361
A
ALA
362
n
42
ALA
362
A
HIS
363
n
43
HIS
363
A
CYS
364
n
44
CYS
364
A
LEU
365
n
45
LEU
365
A
LEU
366
n
46
LEU
366
A
TYR
367
n
47
TYR
367
A
PRO
368
n
48
PRO
368
A
PRO
369
n
49
PRO
369
A
TRP
370
n
50
TRP
370
A
ASP
371
n
51
ASP
371
A
LYS
372
n
52
LYS
372
A
ASN
373
n
53
ASN
373
A
PHE
374
n
54
PHE
374
A
THR
375
n
55
THR
375
A
GLU
376
n
56
GLU
376
A
ASN
377
n
57
ASN
377
A
ASP
378
n
58
ASP
378
A
LEU
379
n
59
LEU
379
A
LEU
380
n
60
LEU
380
A
VAL
381
n
61
VAL
381
A
ARG
382
n
62
ARG
382
A
ILE
383
n
63
ILE
383
A
GLY
384
n
64
GLY
384
A
LYS
385
n
65
LYS
385
A
HIS
386
n
66
HIS
386
A
SER
387
n
67
SER
387
A
ARG
388
n
68
ARG
388
A
THR
389
n
69
THR
389
A
ARG
390
n
70
ARG
390
A
TYR
391
n
71
TYR
391
A
GLU
392
n
72
GLU
392
A
ARG
393
n
73
ARG
393
A
ASN
394
n
74
ASN
394
A
ILE
395
n
75
ILE
395
A
GLU
396
n
76
GLU
396
A
LYS
397
n
77
LYS
397
A
ILE
398
n
78
ILE
398
A
SER
399
n
79
SER
399
A
MET
400
n
80
MET
400
A
LEU
401
n
81
LEU
401
A
GLU
402
n
82
GLU
402
A
LYS
403
n
83
LYS
403
A
ILE
404
n
84
ILE
404
A
TYR
405
n
85
TYR
405
A
ILE
406
n
86
ILE
406
A
HIS
407
n
87
HIS
407
A
PRO
408
n
88
PRO
408
A
ARG
409
n
89
ARG
409
A
TYR
410
n
90
TYR
410
A
ASN
411
n
91
ASN
411
A
TRP
412
n
92
TRP
412
A
ARG
413
n
93
ARG
413
A
GLU
414
n
94
GLU
414
A
ASN
415
n
95
ASN
415
A
LEU
416
n
96
LEU
416
A
ASP
417
n
97
ASP
417
A
ARG
418
n
98
ARG
418
A
ASP
419
n
99
ASP
419
A
ILE
420
n
100
ILE
420
A
ALA
421
n
101
ALA
421
A
LEU
422
n
102
LEU
422
A
MET
423
n
103
MET
423
A
LYS
424
n
104
LYS
424
A
LEU
425
n
105
LEU
425
A
LYS
426
n
106
LYS
426
A
LYS
427
n
107
LYS
427
A
PRO
428
n
108
PRO
428
A
VAL
429
n
109
VAL
429
A
ALA
430
n
110
ALA
430
A
PHE
431
n
111
PHE
431
A
SER
432
n
112
SER
432
A
ASP
433
n
113
ASP
433
A
TYR
434
n
114
TYR
434
A
ILE
435
n
115
ILE
435
A
HIS
436
n
116
HIS
436
A
PRO
437
n
117
PRO
437
A
VAL
438
n
118
VAL
438
A
CYS
439
n
119
CYS
439
A
LEU
440
n
120
LEU
440
A
PRO
441
n
121
PRO
441
A
ASP
442
n
122
ASP
442
A
ARG
443
n
123
ARG
443
A
GLU
444
n
124
GLU
444
A
THR
445
n
125
THR
445
A
ALA
446
n
126
ALA
446
A
ALA
447
n
127
ALA
447
A
SER
448
n
128
SER
448
A
LEU
449
n
129
LEU
449
A
LEU
450
n
130
LEU
450
A
GLN
451
n
131
GLN
451
A
ALA
452
n
132
ALA
452
A
GLY
453
n
133
GLY
453
A
TYR
454
n
134
TYR
454
A
LYS
455
n
135
LYS
455
A
GLY
456
n
136
GLY
456
A
ARG
457
n
137
ARG
457
A
VAL
458
n
138
VAL
458
A
THR
459
n
139
THR
459
A
GLY
460
n
140
GLY
460
A
TRP
461
n
141
TRP
461
A
GLY
462
n
142
GLY
462
A
ASN
463
n
143
ASN
463
A
LEU
464
n
144
LEU
464
A
LYS
465
n
145
LYS
465
A
GLU
466
n
146
GLU
466
A
n
147
467
A
n
148
468
A
n
149
469
A
n
150
470
A
n
151
471
A
n
152
472
A
n
153
473
A
n
154
474
A
GLY
475
n
155
GLY
475
A
GLN
476
n
156
GLN
476
A
PRO
477
n
157
PRO
477
A
SER
478
n
158
SER
478
A
VAL
479
n
159
VAL
479
A
LEU
480
n
160
LEU
480
A
GLN
481
n
161
GLN
481
A
VAL
482
n
162
VAL
482
A
VAL
483
n
163
VAL
483
A
ASN
484
n
164
ASN
484
A
LEU
485
n
165
LEU
485
A
PRO
486
n
166
PRO
486
A
ILE
487
n
167
ILE
487
A
VAL
488
n
168
VAL
488
A
GLU
489
n
169
GLU
489
A
ARG
490
n
170
ARG
490
A
PRO
491
n
171
PRO
491
A
VAL
492
n
172
VAL
492
A
CYS
493
n
173
CYS
493
A
LYS
494
n
174
LYS
494
A
ASP
495
n
175
ASP
495
A
SER
496
n
176
SER
496
A
THR
497
n
177
THR
497
A
ARG
498
n
178
ARG
498
A
ILE
499
n
179
ILE
499
A
ARG
500
n
180
ARG
500
A
ILE
501
n
181
ILE
501
A
THR
502
n
182
THR
502
A
ASP
503
n
183
ASP
503
A
ASN
504
n
184
ASN
504
A
MET
505
n
185
MET
505
A
PHE
506
n
186
PHE
506
A
CYS
507
n
187
CYS
507
A
ALA
508
n
188
ALA
508
A
GLY
509
n
189
GLY
509
A
TYR
510
n
190
TYR
510
A
LYS
511
n
191
LYS
511
A
PRO
512
n
192
PRO
512
A
ASP
513
n
193
ASP
513
A
GLU
514
n
194
GLU
514
A
GLY
515
n
195
GLY
515
A
LYS
516
n
196
LYS
516
A
ARG
517
n
197
ARG
517
A
GLY
518
n
198
GLY
518
A
ASP
519
n
199
ASP
519
A
ALA
520
n
200
ALA
520
A
CYS
521
n
201
CYS
521
A
GLU
522
n
202
GLU
522
A
GLY
523
n
203
GLY
523
A
ASP
524
n
204
ASP
524
A
SER
525
n
205
SER
525
A
GLY
526
n
206
GLY
526
A
GLY
527
n
207
GLY
527
A
PRO
528
n
208
PRO
528
A
PHE
529
n
209
PHE
529
A
VAL
530
n
210
VAL
530
A
MET
531
n
211
MET
531
A
LYS
532
n
212
LYS
532
A
SER
533
n
213
SER
533
A
PRO
534
n
214
PRO
534
A
PHE
535
n
215
PHE
535
A
ASN
536
n
216
ASN
536
A
ASN
537
n
217
ASN
537
A
ARG
538
n
218
ARG
538
A
TRP
539
n
219
TRP
539
A
TYR
540
n
220
TYR
540
A
GLN
541
n
221
GLN
541
A
MET
542
n
222
MET
542
A
GLY
543
n
223
GLY
543
A
ILE
544
n
224
ILE
544
A
VAL
545
n
225
VAL
545
A
SER
546
n
226
SER
546
A
TRP
547
n
227
TRP
547
A
GLY
548
n
228
GLY
548
A
GLU
549
n
229
GLU
549
A
GLY
550
n
230
GLY
550
A
CYS
551
n
231
CYS
551
A
ASP
552
n
232
ASP
552
A
ARG
553
n
233
ARG
553
A
ASP
554
n
234
ASP
554
A
GLY
555
n
235
GLY
555
A
LYS
556
n
236
LYS
556
A
TYR
557
n
237
TYR
557
A
GLY
558
n
238
GLY
558
A
PHE
559
n
239
PHE
559
A
TYR
560
n
240
TYR
560
A
THR
561
n
241
THR
561
A
HIS
562
n
242
HIS
562
A
VAL
563
n
243
VAL
563
A
PHE
564
n
244
PHE
564
A
ARG
565
n
245
ARG
565
A
LEU
566
n
246
LEU
566
A
LYS
567
n
247
LYS
567
A
LYS
568
n
248
LYS
568
A
TRP
569
n
249
TRP
569
A
ILE
570
n
250
ILE
570
A
GLN
571
n
251
GLN
571
A
LYS
572
n
252
LYS
572
A
VAL
573
n
253
VAL
573
A
ILE
574
n
254
ILE
574
A
ASP
575
n
255
ASP
575
A
GLN
576
n
256
GLN
576
A
PHE
577
n
257
PHE
577
A
n
258
578
A
n
259
579
A
n
1
285
B
n
2
286
B
n
3
287
B
n
4
288
B
n
5
289
B
n
6
290
B
ALA
291
n
7
ALA
291
B
ASP
292
n
8
ASP
292
B
CYS
293
n
9
CYS
293
B
GLY
294
n
10
GLY
294
B
LEU
295
n
11
LEU
295
B
ARG
296
n
12
ARG
296
B
PRO
297
n
13
PRO
297
B
LEU
298
n
14
LEU
298
B
PHE
299
n
15
PHE
299
B
GLU
300
n
16
GLU
300
B
LYS
301
n
17
LYS
301
B
LYS
302
n
18
LYS
302
B
SER
303
n
19
SER
303
B
LEU
304
n
20
LEU
304
B
GLU
305
n
21
GLU
305
B
ASP
306
n
22
ASP
306
B
LYS
307
n
23
LYS
307
B
THR
308
n
24
THR
308
B
GLU
309
n
25
GLU
309
B
ARG
310
n
26
ARG
310
B
GLU
311
n
27
GLU
311
B
LEU
312
n
28
LEU
312
B
LEU
313
n
29
LEU
313
B
GLU
314
n
30
GLU
314
B
SER
315
n
31
SER
315
B
TYR
316
n
32
TYR
316
B
ILE
317
n
33
ILE
317
B
ASP
318
n
34
ASP
318
B
n
35
319
B
n
36
320
B
ILE
321
n
1
ILE
321
H
VAL
322
n
2
VAL
322
H
GLU
323
n
3
GLU
323
H
GLY
324
n
4
GLY
324
H
SER
325
n
5
SER
325
H
ASP
326
n
6
ASP
326
H
ALA
327
n
7
ALA
327
H
GLU
328
n
8
GLU
328
H
ILE
329
n
9
ILE
329
H
GLY
330
n
10
GLY
330
H
MET
331
n
11
MET
331
H
SER
332
n
12
SER
332
H
PRO
333
n
13
PRO
333
H
TRP
334
n
14
TRP
334
H
GLN
335
n
15
GLN
335
H
VAL
336
n
16
VAL
336
H
MET
337
n
17
MET
337
H
LEU
338
n
18
LEU
338
H
PHE
339
n
19
PHE
339
H
ARG
340
n
20
ARG
340
H
LYS
341
n
21
LYS
341
H
SER
342
n
22
SER
342
H
PRO
343
n
23
PRO
343
H
GLN
344
n
24
GLN
344
H
GLU
345
n
25
GLU
345
H
LEU
346
n
26
LEU
346
H
LEU
347
n
27
LEU
347
H
CYS
348
n
28
CYS
348
H
GLY
349
n
29
GLY
349
H
ALA
350
n
30
ALA
350
H
SER
351
n
31
SER
351
H
LEU
352
n
32
LEU
352
H
ILE
353
n
33
ILE
353
H
SER
354
n
34
SER
354
H
ASP
355
n
35
ASP
355
H
ARG
356
n
36
ARG
356
H
TRP
357
n
37
TRP
357
H
VAL
358
n
38
VAL
358
H
LEU
359
n
39
LEU
359
H
THR
360
n
40
THR
360
H
ALA
361
n
41
ALA
361
H
ALA
362
n
42
ALA
362
H
HIS
363
n
43
HIS
363
H
CYS
364
n
44
CYS
364
H
LEU
365
n
45
LEU
365
H
LEU
366
n
46
LEU
366
H
TYR
367
n
47
TYR
367
H
PRO
368
n
48
PRO
368
H
PRO
369
n
49
PRO
369
H
TRP
370
n
50
TRP
370
H
ASP
371
n
51
ASP
371
H
LYS
372
n
52
LYS
372
H
ASN
373
n
53
ASN
373
H
PHE
374
n
54
PHE
374
H
THR
375
n
55
THR
375
H
GLU
376
n
56
GLU
376
H
ASN
377
n
57
ASN
377
H
ASP
378
n
58
ASP
378
H
LEU
379
n
59
LEU
379
H
LEU
380
n
60
LEU
380
H
VAL
381
n
61
VAL
381
H
ARG
382
n
62
ARG
382
H
ILE
383
n
63
ILE
383
H
GLY
384
n
64
GLY
384
H
LYS
385
n
65
LYS
385
H
HIS
386
n
66
HIS
386
H
SER
387
n
67
SER
387
H
ARG
388
n
68
ARG
388
H
THR
389
n
69
THR
389
H
ARG
390
n
70
ARG
390
H
TYR
391
n
71
TYR
391
H
GLU
392
n
72
GLU
392
H
ARG
393
n
73
ARG
393
H
ASN
394
n
74
ASN
394
H
ILE
395
n
75
ILE
395
H
GLU
396
n
76
GLU
396
H
LYS
397
n
77
LYS
397
H
ILE
398
n
78
ILE
398
H
SER
399
n
79
SER
399
H
MET
400
n
80
MET
400
H
LEU
401
n
81
LEU
401
H
GLU
402
n
82
GLU
402
H
LYS
403
n
83
LYS
403
H
ILE
404
n
84
ILE
404
H
TYR
405
n
85
TYR
405
H
ILE
406
n
86
ILE
406
H
HIS
407
n
87
HIS
407
H
PRO
408
n
88
PRO
408
H
ARG
409
n
89
ARG
409
H
TYR
410
n
90
TYR
410
H
ASN
411
n
91
ASN
411
H
TRP
412
n
92
TRP
412
H
ARG
413
n
93
ARG
413
H
GLU
414
n
94
GLU
414
H
ASN
415
n
95
ASN
415
H
LEU
416
n
96
LEU
416
H
ASP
417
n
97
ASP
417
H
ARG
418
n
98
ARG
418
H
ASP
419
n
99
ASP
419
H
ILE
420
n
100
ILE
420
H
ALA
421
n
101
ALA
421
H
LEU
422
n
102
LEU
422
H
MET
423
n
103
MET
423
H
LYS
424
n
104
LYS
424
H
LEU
425
n
105
LEU
425
H
LYS
426
n
106
LYS
426
H
LYS
427
n
107
LYS
427
H
PRO
428
n
108
PRO
428
H
VAL
429
n
109
VAL
429
H
ALA
430
n
110
ALA
430
H
PHE
431
n
111
PHE
431
H
SER
432
n
112
SER
432
H
ASP
433
n
113
ASP
433
H
TYR
434
n
114
TYR
434
H
ILE
435
n
115
ILE
435
H
HIS
436
n
116
HIS
436
H
PRO
437
n
117
PRO
437
H
VAL
438
n
118
VAL
438
H
CYS
439
n
119
CYS
439
H
LEU
440
n
120
LEU
440
H
PRO
441
n
121
PRO
441
H
ASP
442
n
122
ASP
442
H
ARG
443
n
123
ARG
443
H
GLU
444
n
124
GLU
444
H
THR
445
n
125
THR
445
H
ALA
446
n
126
ALA
446
H
ALA
447
n
127
ALA
447
H
SER
448
n
128
SER
448
H
LEU
449
n
129
LEU
449
H
LEU
450
n
130
LEU
450
H
GLN
451
n
131
GLN
451
H
ALA
452
n
132
ALA
452
H
GLY
453
n
133
GLY
453
H
TYR
454
n
134
TYR
454
H
LYS
455
n
135
LYS
455
H
GLY
456
n
136
GLY
456
H
ARG
457
n
137
ARG
457
H
VAL
458
n
138
VAL
458
H
THR
459
n
139
THR
459
H
GLY
460
n
140
GLY
460
H
TRP
461
n
141
TRP
461
H
GLY
462
n
142
GLY
462
H
ASN
463
n
143
ASN
463
H
LEU
464
n
144
LEU
464
H
LYS
465
n
145
LYS
465
H
GLU
466
n
146
GLU
466
H
THR
467
n
147
THR
467
H
TRP
468
n
148
TRP
468
H
THR
469
n
149
THR
469
H
ALA
470
n
150
ALA
470
H
ASN
471
n
151
ASN
471
H
VAL
472
n
152
VAL
472
H
GLY
473
n
153
GLY
473
H
n
154
474
H
GLY
475
n
155
GLY
475
H
GLN
476
n
156
GLN
476
H
PRO
477
n
157
PRO
477
H
SER
478
n
158
SER
478
H
VAL
479
n
159
VAL
479
H
LEU
480
n
160
LEU
480
H
GLN
481
n
161
GLN
481
H
VAL
482
n
162
VAL
482
H
VAL
483
n
163
VAL
483
H
ASN
484
n
164
ASN
484
H
LEU
485
n
165
LEU
485
H
PRO
486
n
166
PRO
486
H
ILE
487
n
167
ILE
487
H
VAL
488
n
168
VAL
488
H
GLU
489
n
169
GLU
489
H
ARG
490
n
170
ARG
490
H
PRO
491
n
171
PRO
491
H
VAL
492
n
172
VAL
492
H
CYS
493
n
173
CYS
493
H
LYS
494
n
174
LYS
494
H
ASP
495
n
175
ASP
495
H
SER
496
n
176
SER
496
H
THR
497
n
177
THR
497
H
ARG
498
n
178
ARG
498
H
ILE
499
n
179
ILE
499
H
ARG
500
n
180
ARG
500
H
ILE
501
n
181
ILE
501
H
THR
502
n
182
THR
502
H
ASP
503
n
183
ASP
503
H
ASN
504
n
184
ASN
504
H
MET
505
n
185
MET
505
H
PHE
506
n
186
PHE
506
H
CYS
507
n
187
CYS
507
H
ALA
508
n
188
ALA
508
H
GLY
509
n
189
GLY
509
H
TYR
510
n
190
TYR
510
H
LYS
511
n
191
LYS
511
H
PRO
512
n
192
PRO
512
H
ASP
513
n
193
ASP
513
H
GLU
514
n
194
GLU
514
H
GLY
515
n
195
GLY
515
H
LYS
516
n
196
LYS
516
H
ARG
517
n
197
ARG
517
H
GLY
518
n
198
GLY
518
H
ASP
519
n
199
ASP
519
H
ALA
520
n
200
ALA
520
H
CYS
521
n
201
CYS
521
H
GLU
522
n
202
GLU
522
H
GLY
523
n
203
GLY
523
H
ASP
524
n
204
ASP
524
H
SER
525
n
205
SER
525
H
GLY
526
n
206
GLY
526
H
GLY
527
n
207
GLY
527
H
PRO
528
n
208
PRO
528
H
PHE
529
n
209
PHE
529
H
VAL
530
n
210
VAL
530
H
MET
531
n
211
MET
531
H
LYS
532
n
212
LYS
532
H
SER
533
n
213
SER
533
H
PRO
534
n
214
PRO
534
H
PHE
535
n
215
PHE
535
H
ASN
536
n
216
ASN
536
H
ASN
537
n
217
ASN
537
H
ARG
538
n
218
ARG
538
H
TRP
539
n
219
TRP
539
H
TYR
540
n
220
TYR
540
H
GLN
541
n
221
GLN
541
H
MET
542
n
222
MET
542
H
GLY
543
n
223
GLY
543
H
ILE
544
n
224
ILE
544
H
VAL
545
n
225
VAL
545
H
SER
546
n
226
SER
546
H
TRP
547
n
227
TRP
547
H
GLY
548
n
228
GLY
548
H
GLU
549
n
229
GLU
549
H
GLY
550
n
230
GLY
550
H
CYS
551
n
231
CYS
551
H
ASP
552
n
232
ASP
552
H
ARG
553
n
233
ARG
553
H
ASP
554
n
234
ASP
554
H
GLY
555
n
235
GLY
555
H
LYS
556
n
236
LYS
556
H
TYR
557
n
237
TYR
557
H
GLY
558
n
238
GLY
558
H
PHE
559
n
239
PHE
559
H
TYR
560
n
240
TYR
560
H
THR
561
n
241
THR
561
H
HIS
562
n
242
HIS
562
H
VAL
563
n
243
VAL
563
H
PHE
564
n
244
PHE
564
H
ARG
565
n
245
ARG
565
H
LEU
566
n
246
LEU
566
H
LYS
567
n
247
LYS
567
H
LYS
568
n
248
LYS
568
H
TRP
569
n
249
TRP
569
H
ILE
570
n
250
ILE
570
H
GLN
571
n
251
GLN
571
H
LYS
572
n
252
LYS
572
H
VAL
573
n
253
VAL
573
H
ILE
574
n
254
ILE
574
H
ASP
575
n
255
ASP
575
H
GLN
576
n
256
GLN
576
H
PHE
577
n
257
PHE
577
H
GLY
578
n
258
GLY
578
H
GLU
579
n
259
GLU
579
H
n
1
285
L
n
2
286
L
GLY
287
n
3
GLY
287
L
SER
288
n
4
SER
288
L
GLY
289
n
5
GLY
289
L
GLU
290
n
6
GLU
290
L
ALA
291
n
7
ALA
291
L
ASP
292
n
8
ASP
292
L
CYS
293
n
9
CYS
293
L
GLY
294
n
10
GLY
294
L
LEU
295
n
11
LEU
295
L
ARG
296
n
12
ARG
296
L
PRO
297
n
13
PRO
297
L
LEU
298
n
14
LEU
298
L
PHE
299
n
15
PHE
299
L
GLU
300
n
16
GLU
300
L
LYS
301
n
17
LYS
301
L
LYS
302
n
18
LYS
302
L
SER
303
n
19
SER
303
L
LEU
304
n
20
LEU
304
L
GLU
305
n
21
GLU
305
L
ASP
306
n
22
ASP
306
L
LYS
307
n
23
LYS
307
L
THR
308
n
24
THR
308
L
GLU
309
n
25
GLU
309
L
ARG
310
n
26
ARG
310
L
GLU
311
n
27
GLU
311
L
LEU
312
n
28
LEU
312
L
LEU
313
n
29
LEU
313
L
GLU
314
n
30
GLU
314
L
SER
315
n
31
SER
315
L
TYR
316
n
32
TYR
316
L
ILE
317
n
33
ILE
317
L
ASP
318
n
34
ASP
318
L
n
35
319
L
n
36
320
L
n
1
1
M
n
2
2
M
n
3
3
M
n
4
4
M
n
5
5
M
n
6
6
M
n
7
7
M
n
8
8
M
n
9
9
M
n
10
10
M
n
11
11
M
n
12
12
M
n
13
13
M
n
14
14
M
n
15
15
M
n
16
16
M
n
17
17
M
n
18
18
M
n
19
19
M
n
20
20
M
n
21
21
M
n
22
22
M
n
23
23
M
n
24
24
M
n
25
25
M
n
26
26
M
n
27
27
M
n
28
28
M
n
29
29
M
n
30
30
M
n
31
31
M
n
32
32
M
n
33
33
M
n
34
34
M
n
35
35
M
n
36
36
M
n
37
37
M
n
38
38
M
n
39
39
M
n
40
40
M
n
41
41
M
n
42
42
M
n
43
43
M
n
44
44
M
n
45
45
M
n
46
46
M
n
47
47
M
n
48
48
M
n
49
49
M
n
50
50
M
ALA
51
n
51
ALA
51
M
LYS
52
n
52
LYS
52
M
PRO
53
n
53
PRO
53
M
ARG
54
n
54
ARG
54
M
LEU
55
n
55
LEU
55
M
n
56
56
M
n
57
57
M
n
58
58
M
n
59
59
M
n
60
60
M
3.3268
-3.6606
0.9656
6.4865
1.3106
2.8547
-0.1982
-0.4680
-0.2967
0.6264
0.3593
1.1813
0.9958
-1.4634
-0.2070
0.7242
-0.2470
0.2492
0.9054
0.0086
0.8625
refined
15.0362
6.0120
45.4603
X-RAY DIFFRACTION
0.6715
0.1816
0.4323
8.0616
-4.2750
2.7091
0.4024
-0.0104
-0.0809
0.5014
-0.1518
0.0252
-0.0795
-0.4535
-0.2140
0.5080
-0.0834
-0.0518
0.2769
-0.0322
0.3438
refined
24.3571
-3.0173
45.8166
X-RAY DIFFRACTION
6.0976
3.3875
-6.4168
2.1901
-3.8663
7.3409
-0.1925
-0.0947
-0.7415
0.6186
-0.0061
-0.4852
0.9781
0.9248
0.2664
0.6005
0.0866
-0.0838
0.3979
-0.0010
0.3903
refined
32.4746
-8.0311
44.4661
X-RAY DIFFRACTION
2.5074
0.1746
1.7320
1.7200
3.4804
7.8203
0.3702
0.3361
-1.4988
0.2609
0.9271
-1.7525
0.2653
1.2433
-0.8888
0.3534
0.0696
-0.0670
0.4746
-0.1535
0.7085
refined
40.7798
1.4347
40.1922
X-RAY DIFFRACTION
5.2589
-0.6482
1.5915
4.0238
0.1453
3.5505
0.2068
0.4083
-0.1951
-0.2842
-0.2011
0.2545
0.3907
-0.0429
-0.0186
0.3068
0.0320
0.0421
0.2480
-0.0578
0.2394
refined
16.6036
-1.0918
25.1193
X-RAY DIFFRACTION
4.0708
0.4045
0.2611
2.3576
0.5551
4.8495
0.1555
0.0440
-0.0975
-0.1602
-0.0513
0.1361
-0.0092
-0.3199
-0.0931
0.3084
0.0292
0.0396
0.2122
-0.0322
0.2698
refined
19.1475
2.9467
31.1490
X-RAY DIFFRACTION
3.8830
-0.2232
0.1842
2.3090
0.9646
4.1786
0.1389
0.6326
0.0763
-0.4053
0.2344
-0.4002
-0.3193
0.7470
-0.3286
0.3257
-0.0041
0.0588
0.4259
-0.0482
0.3287
refined
32.5033
3.5927
24.4143
X-RAY DIFFRACTION
4.4428
-0.8089
0.9311
2.1825
-1.5355
8.5614
0.2758
-0.2590
0.2134
0.1801
-0.3105
0.4211
-1.0086
-0.5053
-0.0077
0.6043
0.1107
0.0429
0.2781
-0.0451
0.4643
refined
15.1812
15.6241
34.2028
X-RAY DIFFRACTION
4.4407
-4.1491
-5.1782
4.7600
3.5903
7.8081
-0.1007
-0.7748
-1.1388
0.5108
-0.0774
0.3710
0.6265
-0.4343
0.0803
0.3741
-0.1439
-0.0090
0.6727
0.0533
0.5244
refined
-12.9307
-0.1431
62.9273
X-RAY DIFFRACTION
8.9982
5.1456
-0.3660
9.2392
1.1151
8.1466
-0.9418
0.6252
0.4167
-0.2173
0.3765
1.4725
0.3437
-1.0857
0.4676
0.4298
0.0333
0.0787
0.7510
0.0219
0.4428
refined
-18.4579
6.4098
60.9817
X-RAY DIFFRACTION
2.7667
-1.5013
-3.9450
2.9202
4.3387
7.9283
0.0870
-0.0904
0.4478
-0.6826
-0.4206
0.5019
-1.0331
-2.0026
0.2654
0.3913
0.1549
-0.0483
0.5415
-0.0520
0.3653
refined
-12.7759
12.6179
49.7559
X-RAY DIFFRACTION
2.5903
-0.0622
-0.2552
5.5241
-0.2773
5.4397
0.2901
-0.6753
-0.1167
0.3886
-0.2571
-0.2443
-0.0873
0.0469
-0.0581
0.3891
-0.0495
0.0500
0.7055
0.0881
0.2899
refined
-1.4090
10.1090
71.6447
X-RAY DIFFRACTION
2.1191
-1.8544
0.7398
3.3521
-0.0947
6.7495
-0.0299
-0.8681
-0.3489
0.2157
-0.3485
-0.7152
0.1255
1.6177
0.1784
0.4843
0.1312
-0.0454
1.0165
0.1856
0.4833
refined
10.5170
5.3869
72.6084
X-RAY DIFFRACTION
3.7539
-1.0677
0.1280
2.8055
0.5996
4.4990
0.0512
-0.7980
0.0326
0.4806
0.0501
-0.3695
0.3618
0.8026
0.0271
0.4678
0.1401
-0.0297
0.8359
0.0707
0.4286
refined
6.0574
5.5558
70.8303
X-RAY DIFFRACTION
1.9521
0.4467
-0.6295
3.0001
-0.9579
4.3358
-0.0282
-0.4904
-0.4982
0.1525
0.1229
0.0540
0.5246
-0.0279
-0.0606
0.3657
0.0126
0.0566
0.5365
0.1216
0.3726
refined
-2.8154
1.9245
61.0178
X-RAY DIFFRACTION
6.1672
-0.1418
-1.7884
5.1560
2.3208
9.2936
0.1986
-0.7159
0.4140
0.2978
-0.0643
0.0800
-0.7272
-0.4510
-0.1156
0.2868
0.0948
-0.0198
0.3541
0.0234
0.3262
refined
-2.6537
19.0777
64.7009
X-RAY DIFFRACTION
1.7473
-0.7069
1.1080
8.0101
-0.9887
8.7664
0.0690
0.0549
0.2531
-0.5191
0.3584
-0.7772
-0.3599
0.9936
-0.4528
0.3851
-0.0707
0.1413
0.6281
0.0144
0.4047
refined
13.0870
16.9543
49.7140
X-RAY DIFFRACTION
7.5439
-3.7614
1.4305
8.3894
-2.9530
6.5097
0.0147
-0.2815
0.5981
0.2505
-0.1564
-0.5459
-0.8704
0.2894
0.1470
0.2497
-0.0511
0.0186
0.3466
-0.0606
0.2892
refined
1.0935
20.3571
57.0361
X-RAY DIFFRACTION
2.5550
1.0008
0.2060
4.4249
1.2571
4.3760
0.1487
-0.1370
-0.0520
0.0253
-0.1896
-0.2316
-0.0976
0.1102
0.0754
0.2774
0.0558
0.0364
0.4599
0.0027
0.2844
refined
0.4887
11.5176
56.5693
X-RAY DIFFRACTION
6.8103
-0.1666
4.5741
3.3018
-0.6004
6.5039
0.7068
0.4901
-0.6135
0.1662
-0.3857
-0.0102
1.6335
1.2081
-0.2207
0.7250
0.3119
0.0660
0.6961
-0.0632
0.6495
refined
9.1808
-5.3780
58.7043
X-RAY DIFFRACTION
6.0308
-1.0323
-2.6534
0.2519
0.5760
1.3653
0.4650
0.2620
-0.2356
-0.0158
-0.2627
0.1934
-0.6810
-0.3115
-0.1028
1.0526
-0.1917
0.1179
0.6184
-0.2441
0.6891
refined
27.0239
5.2088
14.5396
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
CHAIN L AND (RESID 287 THROUGH 291 )
X-RAY DIFFRACTION
2
CHAIN L AND (RESID 292 THROUGH 301 )
X-RAY DIFFRACTION
3
CHAIN L AND (RESID 302 THROUGH 308 )
X-RAY DIFFRACTION
4
CHAIN L AND (RESID 309 THROUGH 318 )
X-RAY DIFFRACTION
5
CHAIN H AND (RESID 321 THROUGH 383 )
X-RAY DIFFRACTION
6
CHAIN H AND (RESID 384 THROUGH 460 )
X-RAY DIFFRACTION
7
CHAIN H AND (RESID 461 THROUGH 563 )
X-RAY DIFFRACTION
8
CHAIN H AND (RESID 564 THROUGH 579 )
X-RAY DIFFRACTION
9
CHAIN B AND (RESID 291 THROUGH 299 )
X-RAY DIFFRACTION
10
CHAIN B AND (RESID 300 THROUGH 308 )
X-RAY DIFFRACTION
11
CHAIN B AND (RESID 309 THROUGH 318 )
X-RAY DIFFRACTION
12
CHAIN A AND (RESID 321 THROUGH 354 )
X-RAY DIFFRACTION
13
CHAIN A AND (RESID 355 THROUGH 383 )
X-RAY DIFFRACTION
14
CHAIN A AND (RESID 384 THROUGH 420 )
X-RAY DIFFRACTION
15
CHAIN A AND (RESID 421 THROUGH 460 )
X-RAY DIFFRACTION
16
CHAIN A AND (RESID 461 THROUGH 489 )
X-RAY DIFFRACTION
17
CHAIN A AND (RESID 490 THROUGH 504 )
X-RAY DIFFRACTION
18
CHAIN A AND (RESID 505 THROUGH 527 )
X-RAY DIFFRACTION
19
CHAIN A AND (RESID 528 THROUGH 563 )
X-RAY DIFFRACTION
20
CHAIN A AND (RESID 564 THROUGH 577 )
X-RAY DIFFRACTION
21
CHAIN M AND (RESID 51 THROUGH 54 )
author_and_software_defined_assembly
PISA
3
trimeric
author_and_software_defined_assembly
PISA
2
dimeric
4050
-39.6
13020
3030
-54.0
12830
A
ARG
553
A
O
ARG
233
1_555
A
NA
1579
G
NA
NA
1_555
A
LYS
556
A
O
LYS
236
1_555
92.1
A
ARG
553
A
O
ARG
233
1_555
A
NA
1579
G
NA
NA
1_555
A
HOH
2027
O
O
HOH
1_555
153.3
A
LYS
556
A
O
LYS
236
1_555
A
NA
1579
G
NA
NA
1_555
A
HOH
2027
O
O
HOH
1_555
72.0
A
ARG
553
A
O
ARG
233
1_555
A
NA
1579
G
NA
NA
1_555
A
HOH
2029
O
O
HOH
1_555
84.0
A
LYS
556
A
O
LYS
236
1_555
A
NA
1579
G
NA
NA
1_555
A
HOH
2029
O
O
HOH
1_555
93.0
A
HOH
2027
O
O
HOH
1_555
A
NA
1579
G
NA
NA
1_555
A
HOH
2029
O
O
HOH
1_555
75.8
A
ARG
553
A
O
ARG
233
1_555
A
NA
1579
G
NA
NA
1_555
A
HOH
2037
O
O
HOH
1_555
102.0
A
LYS
556
A
O
LYS
236
1_555
A
NA
1579
G
NA
NA
1_555
A
HOH
2037
O
O
HOH
1_555
79.7
A
HOH
2027
O
O
HOH
1_555
A
NA
1579
G
NA
NA
1_555
A
HOH
2037
O
O
HOH
1_555
96.3
A
HOH
2029
O
O
HOH
1_555
A
NA
1579
G
NA
NA
1_555
A
HOH
2037
O
O
HOH
1_555
170.6
A
ARG
553
A
O
ARG
233
1_555
A
NA
1579
G
NA
NA
1_555
A
HOH
2040
O
O
HOH
1_555
98.2
A
LYS
556
A
O
LYS
236
1_555
A
NA
1579
G
NA
NA
1_555
A
HOH
2040
O
O
HOH
1_555
166.2
A
HOH
2027
O
O
HOH
1_555
A
NA
1579
G
NA
NA
1_555
A
HOH
2040
O
O
HOH
1_555
94.9
A
HOH
2029
O
O
HOH
1_555
A
NA
1579
G
NA
NA
1_555
A
HOH
2040
O
O
HOH
1_555
79.0
A
HOH
2037
O
O
HOH
1_555
A
NA
1579
G
NA
NA
1_555
A
HOH
2040
O
O
HOH
1_555
106.9
H
ARG
553
C
O
ARG
233
1_555
H
NA
1581
L
NA
NA
1_555
H
LYS
556
C
O
LYS
236
1_555
91.8
H
ARG
553
C
O
ARG
233
1_555
H
NA
1581
L
NA
NA
1_555
H
HOH
2031
Q
O
HOH
1_555
149.0
H
LYS
556
C
O
LYS
236
1_555
H
NA
1581
L
NA
NA
1_555
H
HOH
2031
Q
O
HOH
1_555
70.4
H
ARG
553
C
O
ARG
233
1_555
H
NA
1581
L
NA
NA
1_555
H
HOH
2033
Q
O
HOH
1_555
69.6
H
LYS
556
C
O
LYS
236
1_555
H
NA
1581
L
NA
NA
1_555
H
HOH
2033
Q
O
HOH
1_555
91.2
H
HOH
2031
Q
O
HOH
1_555
H
NA
1581
L
NA
NA
1_555
H
HOH
2033
Q
O
HOH
1_555
85.2
H
ARG
553
C
O
ARG
233
1_555
H
NA
1581
L
NA
NA
1_555
H
HOH
2036
Q
O
HOH
1_555
109.5
H
LYS
556
C
O
LYS
236
1_555
H
NA
1581
L
NA
NA
1_555
H
HOH
2036
Q
O
HOH
1_555
90.0
H
HOH
2031
Q
O
HOH
1_555
H
NA
1581
L
NA
NA
1_555
H
HOH
2036
Q
O
HOH
1_555
96.0
H
HOH
2033
Q
O
HOH
1_555
H
NA
1581
L
NA
NA
1_555
H
HOH
2036
Q
O
HOH
1_555
178.6
H
ARG
553
C
O
ARG
233
1_555
H
NA
1581
L
NA
NA
1_555
H
HOH
2042
Q
O
HOH
1_555
98.1
H
LYS
556
C
O
LYS
236
1_555
H
NA
1581
L
NA
NA
1_555
H
HOH
2042
Q
O
HOH
1_555
162.4
H
HOH
2031
Q
O
HOH
1_555
H
NA
1581
L
NA
NA
1_555
H
HOH
2042
Q
O
HOH
1_555
94.2
H
HOH
2033
Q
O
HOH
1_555
H
NA
1581
L
NA
NA
1_555
H
HOH
2042
Q
O
HOH
1_555
78.7
H
HOH
2036
Q
O
HOH
1_555
H
NA
1581
L
NA
NA
1_555
H
HOH
2042
Q
O
HOH
1_555
100.3
A
ASN
373
GLYCOSYLATION SITE
A
ASN
53
ASN
H
ASN
373
GLYCOSYLATION SITE
C
ASN
53
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
325
A
N
SER
5
A
O
VAL
482
A
O
VAL
162
A
N
LEU
485
A
N
LEU
165
A
O
GLY
456
A
O
GLY
136
A
N
THR
459
A
N
THR
139
A
O
PRO
528
A
O
PRO
208
A
N
MET
531
A
N
MET
211
A
O
TYR
540
A
O
TYR
220
A
N
SER
546
A
N
SER
226
A
O
PHE
559
A
O
PHE
239
A
N
TYR
560
A
N
TYR
240
A
O
PHE
506
A
O
PHE
186
A
N
ARG
340
A
N
ARG
20
A
O
GLU
345
A
O
GLU
25
A
N
SER
351
A
N
SER
31
A
O
LEU
359
A
O
LEU
39
A
N
THR
360
A
N
THR
40
A
O
ALA
421
A
O
ALA
101
A
O
LYS
424
A
O
LYS
104
A
N
GLU
402
A
N
GLU
82
A
N
LEU
401
A
N
LEU
81
A
O
LEU
379
A
O
LEU
59
A
N
ARG
382
A
N
ARG
62
A
O
MET
337
A
O
MET
17
A
N
TYR
367
A
N
TYR
47
A
O
LYS
372
A
O
LYS
52
H
N
SER
325
C
N
SER
5
H
O
VAL
482
C
O
VAL
162
H
N
LEU
485
C
N
LEU
165
H
O
GLY
456
C
O
GLY
136
H
N
THR
459
C
N
THR
139
H
O
PRO
528
C
O
PRO
208
H
N
MET
531
C
N
MET
211
H
O
TYR
540
C
O
TYR
220
H
N
SER
546
C
N
SER
226
H
O
PHE
559
C
O
PHE
239
H
N
TYR
560
C
N
TYR
240
H
O
PHE
506
C
O
PHE
186
H
N
ARG
340
C
N
ARG
20
H
O
GLU
345
C
O
GLU
25
H
N
SER
351
C
N
SER
31
H
O
LEU
359
C
O
LEU
39
H
N
THR
360
C
N
THR
40
H
O
ALA
421
C
O
ALA
101
H
O
LYS
424
C
O
LYS
104
H
N
GLU
402
C
N
GLU
82
H
N
LEU
401
C
N
LEU
81
H
O
LEU
379
C
O
LEU
59
H
N
ARG
382
C
N
ARG
62
H
O
MET
337
C
O
MET
17
H
N
TYR
367
C
N
TYR
47
H
O
LYS
372
C
O
LYS
52
1
M
CA
LEU
55
E
CA
LEU
55
1
Y
1
M
C
LEU
55
E
C
LEU
55
1
Y
1
M
O
LEU
55
E
O
LEU
55
1
Y
1
M
CB
LEU
55
E
CB
LEU
55
1
Y
1
M
CG
LEU
55
E
CG
LEU
55
1
Y
1
M
CD1
LEU
55
E
CD1
LEU
55
1
Y
1
M
CD2
LEU
55
E
CD2
LEU
55
1
Y
1
A
THR
467
A
THR
147
1
Y
1
A
TRP
468
A
TRP
148
1
Y
1
A
THR
469
A
THR
149
1
Y
1
A
ALA
470
A
ALA
150
1
Y
1
A
ASN
471
A
ASN
151
1
Y
1
A
VAL
472
A
VAL
152
1
Y
1
A
GLY
473
A
GLY
153
1
Y
1
A
LYS
474
A
LYS
154
1
Y
1
A
GLY
578
A
GLY
258
1
Y
1
A
GLU
579
A
GLU
259
1
Y
1
B
THR
285
B
THR
1
1
Y
1
B
PHE
286
B
PHE
2
1
Y
1
B
GLY
287
B
GLY
3
1
Y
1
B
SER
288
B
SER
4
1
Y
1
B
GLY
289
B
GLY
5
1
Y
1
B
GLU
290
B
GLU
6
1
Y
1
B
GLY
319
B
GLY
35
1
Y
1
B
ARG
320
B
ARG
36
1
Y
1
H
LYS
474
C
LYS
154
1
Y
1
L
THR
285
D
THR
1
1
Y
1
L
PHE
286
D
PHE
2
1
Y
1
L
GLY
319
D
GLY
35
1
Y
1
L
ARG
320
D
ARG
36
1
Y
1
M
TYR
1
E
TYR
1
1
Y
1
M
PRO
2
E
PRO
2
1
Y
1
M
GLU
3
E
GLU
3
1
Y
1
M
ARG
4
E
ARG
4
1
Y
1
M
ASP
5
E
ASP
5
1
Y
1
M
SER
6
E
SER
6
1
Y
1
M
ALA
7
E
ALA
7
1
Y
1
M
LYS
8
E
LYS
8
1
Y
1
M
GLU
9
E
GLU
9
1
Y
1
M
GLY
10
E
GLY
10
1
Y
1
M
ASN
11
E
ASN
11
1
Y
1
M
GLN
12
E
GLN
12
1
Y
1
M
GLU
13
E
GLU
13
1
Y
1
M
GLN
14
E
GLN
14
1
Y
1
M
GLU
15
E
GLU
15
1
Y
1
M
ARG
16
E
ARG
16
1
Y
1
M
ALA
17
E
ALA
17
1
Y
1
M
LEU
18
E
LEU
18
1
Y
1
M
HIS
19
E
HIS
19
1
Y
1
M
VAL
20
E
VAL
20
1
Y
1
M
LYS
21
E
LYS
21
1
Y
1
M
VAL
22
E
VAL
22
1
Y
1
M
GLN
23
E
GLN
23
1
Y
1
M
LYS
24
E
LYS
24
1
Y
1
M
ARG
25
E
ARG
25
1
Y
1
M
THR
26
E
THR
26
1
Y
1
M
ASP
27
E
ASP
27
1
Y
1
M
GLY
28
E
GLY
28
1
Y
1
M
ASP
29
E
ASP
29
1
Y
1
M
ALA
30
E
ALA
30
1
Y
1
M
ASP
31
E
ASP
31
1
Y
1
M
TYR
32
E
TYR
32
1
Y
1
M
ASP
33
E
ASP
33
1
Y
1
M
GLU
34
E
GLU
34
1
Y
1
M
TYR
35
E
TYR
35
1
Y
1
M
GLU
36
E
GLU
36
1
Y
1
M
GLU
37
E
GLU
37
1
Y
1
M
ASP
38
E
ASP
38
1
Y
1
M
GLY
39
E
GLY
39
1
Y
1
M
THR
40
E
THR
40
1
Y
1
M
THR
41
E
THR
41
1
Y
1
M
PRO
42
E
PRO
42
1
Y
1
M
THR
43
E
THR
43
1
Y
1
M
PRO
44
E
PRO
44
1
Y
1
M
ASP
45
E
ASP
45
1
Y
1
M
PRO
46
E
PRO
46
1
Y
1
M
THR
47
E
THR
47
1
Y
1
M
ALA
48
E
ALA
48
1
Y
1
M
PRO
49
E
PRO
49
1
Y
1
M
THR
50
E
THR
50
1
Y
1
M
ARG
56
E
ARG
56
1
Y
1
M
GLY
57
E
GLY
57
1
Y
1
M
ASN
58
E
ASN
58
1
Y
1
M
LYS
59
E
LYS
59
1
Y
1
M
PRO
60
E
PRO
60
1
Y
1
16.84
2.30
115.30
132.14
H
H
H
CA
CB
CG
LEU
LEU
LEU
380
380
380
N
1
A
ASN
373
-156.69
66.24
1
A
HIS
386
-123.73
-53.29
1
A
ASN
415
-143.74
11.68
1
B
PHE
299
-133.27
-80.30
1
H
ASN
373
-157.50
66.80
1
H
HIS
386
-123.31
-56.01
1
H
ARG
393
-43.40
-84.23
1
H
ASN
394
-96.85
31.39
1
H
ASN
415
-143.80
11.79
1
L
PHE
299
-133.27
-80.16
54.0
0.2386
0.1908
0.1932
2.595
43.980
1035
20308
5.1
97.64
0.37
1
1.35
MOLECULAR REPLACEMENT
26.61
0.90
1.11
PDB ENTRY 3U69
ML
FLAT BULK SOLVENT MODEL
2.595
43.980
92
4765
55
0
4618
0.004
4798
0.855
6480
15.093
1802
0.034
670
0.004
824
0.3651
0.2840
2.7318
132
2367
86.00
0.3608
0.2789
2.9029
146
2694
98.00
0.3401
0.2844
3.1270
157
2789
100.00
0.2914
0.2280
3.4416
157
2762
100.00
0.2444
0.1831
3.9393
159
2806
100.00
0.1577
0.1354
4.9620
147
2852
100.00
0.1792
0.1590
43.9861
137
3003
100.00
46.73
2.60
44.00
4BOH
20364
0.0
0.13
1
12.60
6.5
97.7
0.59
2.60
2.74
1.90
1
4.1
86.5
refinement
PHENIX
(PHENIX.REFINE)
data reduction
XDS
data scaling
XSCALE
phasing
PHASER
Madanins (MEROPS I53) are cleaved by thrombin and factor Xa
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
4
N
N
5
N
N
6
N
N
6
N
N
7
N
N
7
N
N
7
N
N
7
N
N
A
ALA
361
A
ALA
41
HELX_P
A
CYS
364
A
CYS
44
5
1
4
A
PRO
368
A
PRO
48
HELX_P
A
ASP
371
A
ASP
51
5
2
4
A
THR
375
A
THR
55
HELX_P
A
ASN
377
A
ASN
57
5
3
3
A
ASP
442
A
ASP
122
HELX_P
A
LEU
450
A
LEU
130
1
4
9
A
GLU
489
A
GLU
169
HELX_P
A
SER
496
A
SER
176
1
5
8
A
LYS
511
A
LYS
191
HELX_P
A
GLY
515
A
GLY
195
5
6
5
A
LEU
566
A
LEU
246
HELX_P
A
PHE
577
A
PHE
257
1
7
12
B
THR
308
B
THR
24
HELX_P
B
ASP
318
B
ASP
34
1
8
11
H
ALA
361
C
ALA
41
HELX_P
H
CYS
364
C
CYS
44
5
9
4
H
PRO
368
C
PRO
48
HELX_P
H
ASP
371
C
ASP
51
5
10
4
H
THR
375
C
THR
55
HELX_P
H
ASN
377
C
ASN
57
5
11
3
H
ASP
442
C
ASP
122
HELX_P
H
LEU
450
C
LEU
130
1
12
9
H
GLU
489
C
GLU
169
HELX_P
H
SER
496
C
SER
176
1
13
8
H
LYS
511
C
LYS
191
HELX_P
H
GLY
515
C
GLY
195
5
14
5
H
LEU
566
C
LEU
246
HELX_P
H
PHE
577
C
PHE
257
1
15
12
L
THR
308
D
THR
24
HELX_P
L
ASP
318
D
ASP
34
1
16
11
disulf
2.033
A
CYS
348
A
SG
CYS
28
1_555
A
CYS
364
A
SG
CYS
44
1_555
disulf
2.034
A
CYS
439
A
SG
CYS
119
1_555
B
CYS
293
B
SG
CYS
9
1_555
disulf
2.030
A
CYS
493
A
SG
CYS
173
1_555
A
CYS
507
A
SG
CYS
187
1_555
disulf
2.034
A
CYS
521
A
SG
CYS
201
1_555
A
CYS
551
A
SG
CYS
231
1_555
disulf
2.035
H
CYS
348
C
SG
CYS
28
1_555
H
CYS
364
C
SG
CYS
44
1_555
disulf
2.034
H
CYS
439
C
SG
CYS
119
1_555
L
CYS
293
D
SG
CYS
9
1_555
disulf
2.025
H
CYS
493
C
SG
CYS
173
1_555
H
CYS
507
C
SG
CYS
187
1_555
disulf
2.034
H
CYS
521
C
SG
CYS
201
1_555
H
CYS
551
C
SG
CYS
231
1_555
covale
1.443
one
N-Glycosylation
A
ASN
373
A
ND2
ASN
53
1_555
A
NAG
1373
F
C1
NAG
1_555
covale
1.443
one
N-Glycosylation
H
ASN
373
C
ND2
ASN
53
1_555
H
NAG
1373
K
C1
NAG
1_555
metalc
2.364
A
ARG
553
A
O
ARG
233
1_555
A
NA
1579
G
NA
NA
1_555
metalc
2.446
A
LYS
556
A
O
LYS
236
1_555
A
NA
1579
G
NA
NA
1_555
metalc
2.420
A
NA
1579
G
NA
NA
1_555
A
HOH
2027
O
O
HOH
1_555
metalc
2.468
A
NA
1579
G
NA
NA
1_555
A
HOH
2029
O
O
HOH
1_555
metalc
2.445
A
NA
1579
G
NA
NA
1_555
A
HOH
2037
O
O
HOH
1_555
metalc
2.420
A
NA
1579
G
NA
NA
1_555
A
HOH
2040
O
O
HOH
1_555
metalc
2.379
H
ARG
553
C
O
ARG
233
1_555
H
NA
1581
L
NA
NA
1_555
metalc
2.273
H
LYS
556
C
O
LYS
236
1_555
H
NA
1581
L
NA
NA
1_555
metalc
2.430
H
NA
1581
L
NA
NA
1_555
H
HOH
2031
Q
O
HOH
1_555
metalc
2.459
H
NA
1581
L
NA
NA
1_555
H
HOH
2033
Q
O
HOH
1_555
metalc
2.380
H
NA
1581
L
NA
NA
1_555
H
HOH
2036
Q
O
HOH
1_555
metalc
2.406
H
NA
1581
L
NA
NA
1_555
H
HOH
2042
Q
O
HOH
1_555
HYDROLASE/INHIBITOR
HYDROLASE-INHIBITOR COMPLEX, COAGULATION INHIBITOR, PROTEASE, MACROMOLECULAR RECOGNITION
A
SER
342
A
SER
22
1
A
PRO
343
A
PRO
23
-2.60
H
SER
342
C
SER
22
1
H
PRO
343
C
PRO
23
-2.79
M
ALA
51
E
ALA
51
1
M
LYS
52
E
LYS
52
-0.75
given
-0.327063
0.611687
-0.720326
0.640479
-0.416990
-0.644908
-0.694850
-0.672279
-0.255390
28.63720
13.02980
89.32780
given
-0.326757
0.645208
-0.690606
0.610181
-0.413999
-0.675488
-0.721740
-0.642115
-0.258417
62.84920
48.14130
51.96720
THRB_HUMAN
UNP
1
P00734
THRB_HUMAN
UNP
2
P00734
Q86FP9_HAELO
UNP
3
Q86FP9
364
622
4BOH
321
579
P00734
A
1
1
259
328
363
4BOH
285
320
P00734
B
2
1
36
364
622
4BOH
321
579
P00734
H
1
1
259
328
363
4BOH
285
320
P00734
L
2
1
36
20
79
4BOH
1
60
Q86FP9
M
3
1
60
7
7
2
7
7
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
325
A
SER
5
A
ASP
326
A
ASP
6
A
GLN
481
A
GLN
161
A
PRO
486
A
PRO
166
A
LYS
455
A
LYS
135
A
GLY
460
A
GLY
140
A
PRO
528
A
PRO
208
A
LYS
532
A
LYS
212
A
TRP
539
A
TRP
219
A
TRP
547
A
TRP
227
A
GLY
558
A
GLY
238
A
HIS
562
A
HIS
242
A
MET
505
A
MET
185
A
ALA
508
A
ALA
188
A
GLN
335
A
GLN
15
A
ARG
340
A
ARG
20
A
GLU
345
A
GLU
25
A
LEU
352
A
LEU
32
A
TRP
357
A
TRP
37
A
THR
360
A
THR
40
A
ALA
421
A
ALA
101
A
LEU
425
A
LEU
105
A
LYS
397
A
LYS
77
A
ILE
406
A
ILE
86
A
LEU
379
A
LEU
59
A
ILE
383
A
ILE
63
A
GLN
335
A
GLN
15
A
ARG
340
A
ARG
20
A
LEU
366
A
LEU
46
A
TYR
367
A
TYR
47
A
LYS
372
A
LYS
52
A
ASN
373
A
ASN
53
H
SER
325
C
SER
5
H
ASP
326
C
ASP
6
H
GLN
481
C
GLN
161
H
PRO
486
C
PRO
166
H
LYS
455
C
LYS
135
H
GLY
460
C
GLY
140
H
PRO
528
C
PRO
208
H
LYS
532
C
LYS
212
H
TRP
539
C
TRP
219
H
TRP
547
C
TRP
227
H
GLY
558
C
GLY
238
H
HIS
562
C
HIS
242
H
MET
505
C
MET
185
H
ALA
508
C
ALA
188
H
GLN
335
C
GLN
15
H
ARG
340
C
ARG
20
H
GLU
345
C
GLU
25
H
LEU
352
C
LEU
32
H
TRP
357
C
TRP
37
H
THR
360
C
THR
40
H
ALA
421
C
ALA
101
H
LEU
425
C
LEU
105
H
LYS
397
C
LYS
77
H
ILE
406
C
ILE
86
H
LEU
379
C
LEU
59
H
ILE
383
C
ILE
63
H
GLN
335
C
GLN
15
H
ARG
340
C
ARG
20
H
LEU
366
C
LEU
46
H
TYR
367
C
TYR
47
H
LYS
372
C
LYS
52
H
ASN
373
C
ASN
53
19
P 21 21 21