0.013799
0.007967
0.000000
0.000000
0.015933
0.000000
0.000000
0.000000
0.005620
0.00000
0.00000
0.00000
Paz, A.
Schredelseker, J.
Abramson, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
72.470
72.470
177.950
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C14 H31 N O
229.402
LAURYL DIMETHYLAMINE-N-OXIDE
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
N
O
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
N
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
C
N
283
N
S
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
C
N
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
N
C
N
342
N
O
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
R
C
N
356
N
O
N
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
N
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
N
406
N
O
N
407
N
O
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
N
C
N
424
N
C
N
425
N
C
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
Y
294
N
doub
Y
295
N
sing
Y
296
N
sing
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
289
12566
10.1074/JBC.M113.497438
24627492
High-Resolution Structure and Double Electron-Electron Resonance of the Zebrafish Voltage Dependent Anion Channel 2 Reveal an Oligomeric Population.
2014
10.2210/pdb4bum/pdb
pdb_00004bum
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2012-11-16
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
5.0.2
ALS
1.0
SYNCHROTRON
ALS BEAMLINE 5.0.2
31148.822
VOLTAGE-DEPENDENT ANION CHANNEL 2
1
man
polymer
229.402
LAURYL DIMETHYLAMINE-N-OXIDE
1
syn
non-polymer
18.015
water
6
nat
water
ZEBRAFISH VDAC2
no
no
MAVPPAYADLGKSAKDIFNKGYGFGMVKLDVKTKSASGVEFKTSGSSNTDTSKVVGSLETKYKRSEYGLTFTEKWNTDNT
LGTEINIEDQIAKGLKLTFDTTFSPNTGKKSGKVKTAYKREFVNLGCDVDFDFAGPTIHGAAVVGYEGWLAGYQMSFDTA
KSKMTQNNFAVGYKTGDFQLHTNVNDGSEFGGSIYQKVSDKLETAVNLAWTAGSNSTRFGIAAKYQLDKDASISAKVNNT
SLVGVGYTQSLRPGIKLTLSALVDGKSINSGGHKLGLGLELEAHHHHHH
MAVPPAYADLGKSAKDIFNKGYGFGMVKLDVKTKSASGVEFKTSGSSNTDTSKVVGSLETKYKRSEYGLTFTEKWNTDNT
LGTEINIEDQIAKGLKLTFDTTFSPNTGKKSGKVKTAYKREFVNLGCDVDFDFAGPTIHGAAVVGYEGWLAGYQMSFDTA
KSKMTQNNFAVGYKTGDFQLHTNVNDGSEFGGSIYQKVSDKLETAVNLAWTAGSNSTRFGIAAKYQLDKDASISAKVNNT
SLVGVGYTQSLRPGIKLTLSALVDGKSINSGGHKLGLGLELEAHHHHHH
X
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ZEBRAFISH
sample
7955
DANIO RERIO
1007065
ESCHERICHIA COLI
M15
PQE60
PLASMID
1
2.17
43
NONE
8.0
100 MM TRISHCL (PH=8.0), 100 MM KCL, AND PEG 2000 IN A RANGE OF 19-24%, 0.011% N-UNDECYL-BETA-D-THIOMALTOPYRANOSIDE
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_site
repository
Initial release
Structure summary
Database references
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2014-03-26
1
1
2014-04-09
1
2
2014-05-14
1
3
2023-12-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
SHEET
DETERMINATION METHOD: DSSP
THE SHEETS PRESENTED AS "XA" IN EACH CHAIN ON SHEET RECORDS
BELOW IS ACTUALLY AN 19-STRANDED BARREL THIS IS REPRESENTED BY
A 20-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS
ARE IDENTICAL.
PDBE
Y
PDBE
2013-06-21
REL
REL
LDA
LAURYL DIMETHYLAMINE-N-OXIDE
HOH
water
3EMN
PDB ENTRY 3EMN
PDB
experimental model
LDA
1284
2
LDA
LDA
1284
X
HOH
2001
3
HOH
HOH
2001
X
HOH
2002
3
HOH
HOH
2002
X
HOH
2003
3
HOH
HOH
2003
X
HOH
2004
3
HOH
HOH
2004
X
HOH
2005
3
HOH
HOH
2005
X
HOH
2006
3
HOH
HOH
2006
X
MET
1
n
1
MET
1
X
ALA
2
n
2
ALA
2
X
VAL
3
n
3
VAL
3
X
PRO
4
n
4
PRO
4
X
PRO
5
n
5
PRO
5
X
ALA
6
n
6
ALA
6
X
TYR
7
n
7
TYR
7
X
ALA
8
n
8
ALA
8
X
ASP
9
n
9
ASP
9
X
LEU
10
n
10
LEU
10
X
GLY
11
n
11
GLY
11
X
LYS
12
n
12
LYS
12
X
SER
13
n
13
SER
13
X
ALA
14
n
14
ALA
14
X
LYS
15
n
15
LYS
15
X
ASP
16
n
16
ASP
16
X
ILE
17
n
17
ILE
17
X
PHE
18
n
18
PHE
18
X
ASN
19
n
19
ASN
19
X
LYS
20
n
20
LYS
20
X
GLY
21
n
21
GLY
21
X
TYR
22
n
22
TYR
22
X
GLY
23
n
23
GLY
23
X
PHE
24
n
24
PHE
24
X
GLY
25
n
25
GLY
25
X
MET
26
n
26
MET
26
X
VAL
27
n
27
VAL
27
X
LYS
28
n
28
LYS
28
X
LEU
29
n
29
LEU
29
X
ASP
30
n
30
ASP
30
X
VAL
31
n
31
VAL
31
X
LYS
32
n
32
LYS
32
X
THR
33
n
33
THR
33
X
LYS
34
n
34
LYS
34
X
SER
35
n
35
SER
35
X
ALA
36
n
36
ALA
36
X
SER
37
n
37
SER
37
X
GLY
38
n
38
GLY
38
X
VAL
39
n
39
VAL
39
X
GLU
40
n
40
GLU
40
X
PHE
41
n
41
PHE
41
X
LYS
42
n
42
LYS
42
X
THR
43
n
43
THR
43
X
SER
44
n
44
SER
44
X
GLY
45
n
45
GLY
45
X
SER
46
n
46
SER
46
X
SER
47
n
47
SER
47
X
ASN
48
n
48
ASN
48
X
THR
49
n
49
THR
49
X
ASP
50
n
50
ASP
50
X
THR
51
n
51
THR
51
X
SER
52
n
52
SER
52
X
LYS
53
n
53
LYS
53
X
VAL
54
n
54
VAL
54
X
VAL
55
n
55
VAL
55
X
GLY
56
n
56
GLY
56
X
SER
57
n
57
SER
57
X
LEU
58
n
58
LEU
58
X
GLU
59
n
59
GLU
59
X
THR
60
n
60
THR
60
X
LYS
61
n
61
LYS
61
X
TYR
62
n
62
TYR
62
X
LYS
63
n
63
LYS
63
X
ARG
64
n
64
ARG
64
X
SER
65
n
65
SER
65
X
GLU
66
n
66
GLU
66
X
TYR
67
n
67
TYR
67
X
GLY
68
n
68
GLY
68
X
LEU
69
n
69
LEU
69
X
THR
70
n
70
THR
70
X
PHE
71
n
71
PHE
71
X
THR
72
n
72
THR
72
X
GLU
73
n
73
GLU
73
X
LYS
74
n
74
LYS
74
X
TRP
75
n
75
TRP
75
X
ASN
76
n
76
ASN
76
X
THR
77
n
77
THR
77
X
ASP
78
n
78
ASP
78
X
ASN
79
n
79
ASN
79
X
THR
80
n
80
THR
80
X
LEU
81
n
81
LEU
81
X
GLY
82
n
82
GLY
82
X
THR
83
n
83
THR
83
X
GLU
84
n
84
GLU
84
X
ILE
85
n
85
ILE
85
X
ASN
86
n
86
ASN
86
X
ILE
87
n
87
ILE
87
X
GLU
88
n
88
GLU
88
X
ASP
89
n
89
ASP
89
X
GLN
90
n
90
GLN
90
X
ILE
91
n
91
ILE
91
X
ALA
92
n
92
ALA
92
X
LYS
93
n
93
LYS
93
X
GLY
94
n
94
GLY
94
X
LEU
95
n
95
LEU
95
X
LYS
96
n
96
LYS
96
X
LEU
97
n
97
LEU
97
X
THR
98
n
98
THR
98
X
PHE
99
n
99
PHE
99
X
ASP
100
n
100
ASP
100
X
THR
101
n
101
THR
101
X
THR
102
n
102
THR
102
X
PHE
103
n
103
PHE
103
X
SER
104
n
104
SER
104
X
PRO
105
n
105
PRO
105
X
ASN
106
n
106
ASN
106
X
THR
107
n
107
THR
107
X
GLY
108
n
108
GLY
108
X
LYS
109
n
109
LYS
109
X
LYS
110
n
110
LYS
110
X
SER
111
n
111
SER
111
X
GLY
112
n
112
GLY
112
X
LYS
113
n
113
LYS
113
X
VAL
114
n
114
VAL
114
X
LYS
115
n
115
LYS
115
X
THR
116
n
116
THR
116
X
ALA
117
n
117
ALA
117
X
TYR
118
n
118
TYR
118
X
LYS
119
n
119
LYS
119
X
ARG
120
n
120
ARG
120
X
GLU
121
n
121
GLU
121
X
PHE
122
n
122
PHE
122
X
VAL
123
n
123
VAL
123
X
ASN
124
n
124
ASN
124
X
LEU
125
n
125
LEU
125
X
GLY
126
n
126
GLY
126
X
CYS
127
n
127
CYS
127
X
ASP
128
n
128
ASP
128
X
VAL
129
n
129
VAL
129
X
ASP
130
n
130
ASP
130
X
PHE
131
n
131
PHE
131
X
ASP
132
n
132
ASP
132
X
PHE
133
n
133
PHE
133
X
ALA
134
n
134
ALA
134
X
GLY
135
n
135
GLY
135
X
PRO
136
n
136
PRO
136
X
THR
137
n
137
THR
137
X
ILE
138
n
138
ILE
138
X
HIS
139
n
139
HIS
139
X
GLY
140
n
140
GLY
140
X
ALA
141
n
141
ALA
141
X
ALA
142
n
142
ALA
142
X
VAL
143
n
143
VAL
143
X
VAL
144
n
144
VAL
144
X
GLY
145
n
145
GLY
145
X
TYR
146
n
146
TYR
146
X
GLU
147
n
147
GLU
147
X
GLY
148
n
148
GLY
148
X
TRP
149
n
149
TRP
149
X
LEU
150
n
150
LEU
150
X
ALA
151
n
151
ALA
151
X
GLY
152
n
152
GLY
152
X
TYR
153
n
153
TYR
153
X
GLN
154
n
154
GLN
154
X
MET
155
n
155
MET
155
X
SER
156
n
156
SER
156
X
PHE
157
n
157
PHE
157
X
ASP
158
n
158
ASP
158
X
THR
159
n
159
THR
159
X
ALA
160
n
160
ALA
160
X
LYS
161
n
161
LYS
161
X
SER
162
n
162
SER
162
X
LYS
163
n
163
LYS
163
X
MET
164
n
164
MET
164
X
THR
165
n
165
THR
165
X
GLN
166
n
166
GLN
166
X
ASN
167
n
167
ASN
167
X
ASN
168
n
168
ASN
168
X
PHE
169
n
169
PHE
169
X
ALA
170
n
170
ALA
170
X
VAL
171
n
171
VAL
171
X
GLY
172
n
172
GLY
172
X
TYR
173
n
173
TYR
173
X
LYS
174
n
174
LYS
174
X
THR
175
n
175
THR
175
X
GLY
176
n
176
GLY
176
X
ASP
177
n
177
ASP
177
X
PHE
178
n
178
PHE
178
X
GLN
179
n
179
GLN
179
X
LEU
180
n
180
LEU
180
X
HIS
181
n
181
HIS
181
X
THR
182
n
182
THR
182
X
ASN
183
n
183
ASN
183
X
VAL
184
n
184
VAL
184
X
ASN
185
n
185
ASN
185
X
ASP
186
n
186
ASP
186
X
GLY
187
n
187
GLY
187
X
SER
188
n
188
SER
188
X
GLU
189
n
189
GLU
189
X
PHE
190
n
190
PHE
190
X
GLY
191
n
191
GLY
191
X
GLY
192
n
192
GLY
192
X
SER
193
n
193
SER
193
X
ILE
194
n
194
ILE
194
X
TYR
195
n
195
TYR
195
X
GLN
196
n
196
GLN
196
X
LYS
197
n
197
LYS
197
X
VAL
198
n
198
VAL
198
X
SER
199
n
199
SER
199
X
ASP
200
n
200
ASP
200
X
LYS
201
n
201
LYS
201
X
LEU
202
n
202
LEU
202
X
GLU
203
n
203
GLU
203
X
THR
204
n
204
THR
204
X
ALA
205
n
205
ALA
205
X
VAL
206
n
206
VAL
206
X
ASN
207
n
207
ASN
207
X
LEU
208
n
208
LEU
208
X
ALA
209
n
209
ALA
209
X
TRP
210
n
210
TRP
210
X
THR
211
n
211
THR
211
X
ALA
212
n
212
ALA
212
X
GLY
213
n
213
GLY
213
X
SER
214
n
214
SER
214
X
ASN
215
n
215
ASN
215
X
SER
216
n
216
SER
216
X
THR
217
n
217
THR
217
X
ARG
218
n
218
ARG
218
X
PHE
219
n
219
PHE
219
X
GLY
220
n
220
GLY
220
X
ILE
221
n
221
ILE
221
X
ALA
222
n
222
ALA
222
X
ALA
223
n
223
ALA
223
X
LYS
224
n
224
LYS
224
X
TYR
225
n
225
TYR
225
X
GLN
226
n
226
GLN
226
X
LEU
227
n
227
LEU
227
X
ASP
228
n
228
ASP
228
X
LYS
229
n
229
LYS
229
X
ASP
230
n
230
ASP
230
X
ALA
231
n
231
ALA
231
X
SER
232
n
232
SER
232
X
ILE
233
n
233
ILE
233
X
SER
234
n
234
SER
234
X
ALA
235
n
235
ALA
235
X
LYS
236
n
236
LYS
236
X
VAL
237
n
237
VAL
237
X
ASN
238
n
238
ASN
238
X
ASN
239
n
239
ASN
239
X
THR
240
n
240
THR
240
X
SER
241
n
241
SER
241
X
LEU
242
n
242
LEU
242
X
VAL
243
n
243
VAL
243
X
GLY
244
n
244
GLY
244
X
VAL
245
n
245
VAL
245
X
GLY
246
n
246
GLY
246
X
TYR
247
n
247
TYR
247
X
THR
248
n
248
THR
248
X
GLN
249
n
249
GLN
249
X
SER
250
n
250
SER
250
X
LEU
251
n
251
LEU
251
X
ARG
252
n
252
ARG
252
X
PRO
253
n
253
PRO
253
X
GLY
254
n
254
GLY
254
X
ILE
255
n
255
ILE
255
X
LYS
256
n
256
LYS
256
X
LEU
257
n
257
LEU
257
X
THR
258
n
258
THR
258
X
LEU
259
n
259
LEU
259
X
SER
260
n
260
SER
260
X
ALA
261
n
261
ALA
261
X
LEU
262
n
262
LEU
262
X
VAL
263
n
263
VAL
263
X
ASP
264
n
264
ASP
264
X
GLY
265
n
265
GLY
265
X
LYS
266
n
266
LYS
266
X
SER
267
n
267
SER
267
X
ILE
268
n
268
ILE
268
X
ASN
269
n
269
ASN
269
X
SER
270
n
270
SER
270
X
GLY
271
n
271
GLY
271
X
GLY
272
n
272
GLY
272
X
HIS
273
n
273
HIS
273
X
LYS
274
n
274
LYS
274
X
LEU
275
n
275
LEU
275
X
GLY
276
n
276
GLY
276
X
LEU
277
n
277
LEU
277
X
GLY
278
n
278
GLY
278
X
LEU
279
n
279
LEU
279
X
GLU
280
n
280
GLU
280
X
LEU
281
n
281
LEU
281
X
GLU
282
n
282
GLU
282
X
ALA
283
n
283
ALA
283
X
n
284
284
X
n
285
285
X
n
286
286
X
n
287
287
X
n
288
288
X
n
289
289
X
0.8914
-1.2934
-0.0109
0.3200
0.1807
0.3051
0.0190
0.3348
0.0546
0.0457
-0.2622
0.1245
-0.0307
0.7821
0.1400
0.3681
-0.1195
-0.1295
0.1758
0.0251
0.3980
refined
-5.5397
23.2185
-4.8548
X-RAY DIFFRACTION
2.1018
-1.4824
0.7969
0.8764
0.1941
2.3409
0.0792
0.1539
-0.1143
0.0801
-0.1542
0.1002
0.1779
0.2581
0.1019
0.2825
-0.0994
-0.0016
0.3328
0.0052
0.3131
refined
-8.4868
22.3611
-20.3370
X-RAY DIFFRACTION
2.2358
0.6696
0.1455
3.4539
0.6128
3.9017
-0.6797
-0.2154
-0.0852
-0.5919
0.4535
0.1481
-0.2356
-0.7575
0.1507
0.3439
-0.0939
0.0660
0.1228
0.0325
0.2848
refined
-26.7935
27.4114
-10.2745
X-RAY DIFFRACTION
4.0996
0.3812
-0.1434
1.2523
0.3479
2.2056
0.1163
-0.0794
0.1046
0.2365
-0.0290
-0.0674
-0.0816
-0.2369
-0.0577
0.3898
-0.0682
-0.0586
0.1352
0.0537
0.1559
refined
-10.2389
20.7934
8.9259
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
CHAIN X AND (RESID 1 THROUGH 48 )
X-RAY DIFFRACTION
2
CHAIN X AND (RESID 49 THROUGH 119 )
X-RAY DIFFRACTION
3
CHAIN X AND (RESID 120 THROUGH 174 )
X-RAY DIFFRACTION
4
CHAIN X AND (RESID 175 THROUGH 283 )
author_and_software_defined_assembly
PISA
2
dimeric
1250
-14.7
32470
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
X
N
THR
33
A
N
THR
33
X
O
PHE
41
A
O
PHE
41
X
N
SER
46
A
N
SER
46
X
O
VAL
55
A
O
VAL
55
X
N
ARG
64
A
N
ARG
64
X
O
LEU
69
A
O
LEU
69
X
N
LYS
74
A
N
LYS
74
X
O
GLY
82
A
O
GLY
82
X
N
ILE
87
A
N
ILE
87
X
O
LEU
97
A
O
LEU
97
X
N
THR
102
A
N
THR
102
X
O
SER
111
A
O
SER
111
X
N
ARG
120
A
N
ARG
120
X
O
VAL
123
A
O
VAL
123
X
N
ASP
130
A
N
ASP
130
X
O
THR
137
A
O
THR
137
X
N
TYR
146
A
N
TYR
146
X
O
TRP
149
A
O
TRP
149
X
N
ASP
158
A
N
ASP
158
X
O
LYS
163
A
O
LYS
163
X
N
TYR
173
A
N
TYR
173
X
O
LEU
180
A
O
LEU
180
X
N
ASN
185
A
N
ASN
185
X
O
GLU
189
A
O
GLU
189
X
N
GLN
196
A
N
GLN
196
X
O
THR
204
A
O
THR
204
X
N
THR
211
A
N
THR
211
X
O
SER
216
A
O
SER
216
X
N
TYR
225
A
N
TYR
225
X
O
ILE
233
A
O
ILE
233
X
N
ASN
238
A
N
ASN
238
X
O
LEU
242
A
O
LEU
242
X
N
LEU
251
A
N
LEU
251
X
O
ILE
255
A
O
ILE
255
X
N
LEU
262
A
N
LEU
262
X
O
LYS
274
A
O
LYS
274
X
N
LEU
277
A
N
LEU
277
X
O
MET
26
A
O
MET
26
1
X
CG
PHE
133
A
CG
PHE
133
1
Y
1
X
CD1
PHE
133
A
CD1
PHE
133
1
Y
1
X
CD2
PHE
133
A
CD2
PHE
133
1
Y
1
X
CE1
PHE
133
A
CE1
PHE
133
1
Y
1
X
CE2
PHE
133
A
CE2
PHE
133
1
Y
1
X
CZ
PHE
133
A
CZ
PHE
133
1
Y
1
X
CG
LYS
266
A
CG
LYS
266
1
Y
1
X
CD
LYS
266
A
CD
LYS
266
1
Y
1
X
CE
LYS
266
A
CE
LYS
266
1
Y
1
X
NZ
LYS
266
A
NZ
LYS
266
1
Y
1
X
CG1
ILE
268
A
CG1
ILE
268
1
Y
1
X
CG2
ILE
268
A
CG2
ILE
268
1
Y
1
X
CD1
ILE
268
A
CD1
ILE
268
1
Y
1
X
CG
ASN
269
A
CG
ASN
269
1
Y
1
X
OD1
ASN
269
A
OD1
ASN
269
1
Y
1
X
ND2
ASN
269
A
ND2
ASN
269
1
Y
1
X
C9
LDA
1284
B
C9
LDA
1
1
N
1
X
C10
LDA
1284
B
C10
LDA
1
1
N
1
X
C11
LDA
1284
B
C11
LDA
1
1
N
1
X
C12
LDA
1284
B
C12
LDA
1
1
N
1
X
MET
1
A
MET
1
0
Y
1
X
HIS
284
A
HIS
284
1
Y
1
X
HIS
285
A
HIS
285
1
Y
1
X
HIS
286
A
HIS
286
1
Y
1
X
HIS
287
A
HIS
287
1
Y
1
X
HIS
288
A
HIS
288
1
Y
1
X
HIS
289
A
HIS
289
1
Y
1
X
ASP
50
-93.66
-71.84
1
X
ARG
64
-152.46
80.90
1
X
GLN
90
-129.46
-52.37
1
X
ALA
92
-167.27
-168.81
1
X
PRO
105
-64.49
3.96
1
X
PHE
122
65.99
-6.70
1
X
ALA
134
-113.85
66.63
1
X
LEU
227
-51.35
-78.55
1
X
ASP
228
-113.17
-163.63
1
X
ILE
268
-150.39
-65.83
50.95
SOME RESIDUES WERE TRIMMED DUE TO VERY WEAK ELECTRON DENSITY OF SIDE-CHAINS. THE LOOP BETWEEN RESIDUES 266-272 IS VERY MOBILE. WE ARE CERTAIN OF THE GENERAL LOCATION IN WHICH IT IS MODELLED, BUT IN SOLUTION IT COULD SAMPLE MANY POSITIONS AROUND THIS VICINITY.
0.2822
0.2455
0.2492
2.801
51.286
1369
13684
10.00
97.98
0.37
1
2.00
MOLECULAR REPLACEMENT
27.48
0.90
1.11
PDB ENTRY 3EMN
ML
FLAT BULK SOLVENT MODEL
2.801
51.286
6
2137
12
0
2119
0.004
2184
0.871
2948
14.316
780
0.062
327
0.004
376
0.3534
0.3123
2.9007
139
1251
100.00
0.3003
0.2987
3.0168
136
1222
100.00
0.3359
0.3106
3.1541
136
1232
100.00
0.3125
0.2764
3.3204
133
1209
100.00
0.2497
0.2381
3.5284
137
1227
100.00
0.2977
0.2464
3.8007
141
1260
100.00
0.3089
0.2568
4.1830
136
1228
99.00
0.2433
0.2204
4.7879
140
1253
99.00
0.2392
0.2233
6.0308
136
1222
95.00
0.3034
0.2355
51.2944
135
1211
89.00
70.86
2.80
51.29
4BUM
13686
2.0
0.08
1
13.00
3.56
98.0
refinement
PHENIX
(PHENIX.REFINE)
phasing
PHENIX
Crystal structure of the Voltage Dependant Anion Channel 2 from zebrafish.
1
N
N
2
N
N
3
N
N
X
ALA
6
A
ALA
6
HELX_P
X
LEU
10
A
LEU
10
5
1
5
X
GLY
11
A
GLY
11
HELX_P
X
LYS
20
A
LYS
20
1
2
10
MEMBRANE PROTEIN
MEMBRANE PROTEIN, MITOCHONDRIA, PORIN, MEMBRANE, DETERGENT, RECOMBINANT
X
LYS
93
A
LYS
93
1
X
GLY
94
A
GLY
94
-2.11
X
GLY
135
A
GLY
135
1
X
PRO
136
A
PRO
136
-5.87
X
GLY
265
A
GLY
265
1
X
LYS
266
A
LYS
266
-1.36
Q8AWD0_DANRE
UNP
1
Q8AWD0
1
283
4BUM
1
283
Q8AWD0
X
1
1
283
1
expression tag
HIS
284
4BUM
X
Q8AWD0
UNP
284
1
expression tag
HIS
285
4BUM
X
Q8AWD0
UNP
285
1
expression tag
HIS
286
4BUM
X
Q8AWD0
UNP
286
1
expression tag
HIS
287
4BUM
X
Q8AWD0
UNP
287
1
expression tag
HIS
288
4BUM
X
Q8AWD0
UNP
288
1
expression tag
HIS
289
4BUM
X
Q8AWD0
UNP
289
20
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
X
MET
26
A
MET
26
X
LYS
34
A
LYS
34
X
GLU
40
A
GLU
40
X
ASN
48
A
ASN
48
X
VAL
54
A
VAL
54
X
ARG
64
A
ARG
64
X
LEU
69
A
LEU
69
X
ASN
76
A
ASN
76
X
LEU
81
A
LEU
81
X
GLU
88
A
GLU
88
X
LEU
95
A
LEU
95
X
PHE
103
A
PHE
103
X
LYS
110
A
LYS
110
X
ARG
120
A
ARG
120
X
VAL
123
A
VAL
123
X
PHE
131
A
PHE
131
X
THR
137
A
THR
137
X
TYR
146
A
TYR
146
X
TRP
149
A
TRP
149
X
ASP
158
A
ASP
158
X
LYS
163
A
LYS
163
X
LYS
174
A
LYS
174
X
PHE
178
A
PHE
178
X
ASN
185
A
ASN
185
X
GLU
189
A
GLU
189
X
LYS
197
A
LYS
197
X
LEU
202
A
LEU
202
X
THR
211
A
THR
211
X
SER
216
A
SER
216
X
TYR
225
A
TYR
225
X
ALA
231
A
ALA
231
X
ASN
238
A
ASN
238
X
LEU
242
A
LEU
242
X
ARG
252
A
ARG
252
X
ILE
255
A
ILE
255
X
ASP
264
A
ASP
264
X
LYS
274
A
LYS
274
X
ALA
283
A
ALA
283
X
MET
26
A
MET
26
X
LYS
34
A
LYS
34
BINDING SITE FOR RESIDUE LDA X 1284
X
LDA
1284
Software
2
X
VAL
54
A
VAL
54
2
4_555
X
HIS
273
A
HIS
273
2
1_555
154
P 32 2 1