0.013799 0.007967 0.000000 0.000000 0.015933 0.000000 0.000000 0.000000 0.005620 0.00000 0.00000 0.00000 Paz, A. Schredelseker, J. Abramson, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 72.470 72.470 177.950 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C14 H31 N O 229.402 LAURYL DIMETHYLAMINE-N-OXIDE non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 N O N 185 N C N 186 N C N 187 N C N 188 N C N 189 N C N 190 N C N 191 N C N 192 N C N 193 N C N 194 N C N 195 N C N 196 N C N 197 N C N 198 N C N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N C N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N N N 253 S C N 254 N C N 255 N O N 256 N C N 257 N C N 258 N C N 259 N C N 260 N N N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C N 282 N C N 283 N S N 284 N C N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N N N 298 S C N 299 N C N 300 N O N 301 N C Y 302 N C Y 303 N C Y 304 N C Y 305 N C Y 306 N C Y 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N N N 321 S C N 322 N C N 323 N O N 324 N C N 325 N C N 326 N C N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 N C N 342 N O N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 R C N 356 N O N 357 N C N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N N N 369 S C N 370 N C N 371 N O N 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N N Y 377 N C Y 378 N C Y 379 N C Y 380 N C Y 381 N C N 382 N O N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N N N 396 S C N 397 N C N 398 N O N 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C N 406 N O N 407 N O N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N N N 420 S C N 421 N C N 422 N O N 423 N C N 424 N C N 425 N C N 426 N O N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing Y 294 N doub Y 295 N sing Y 296 N sing N 297 N sing Y 298 N doub N 299 N sing Y 300 N doub N 301 N sing Y 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N doub N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing Y 363 N doub Y 364 N sing Y 365 N sing N 366 N sing Y 367 N doub Y 368 N sing Y 369 N sing N 370 N sing Y 371 N sing Y 372 N doub N 373 N sing Y 374 N doub N 375 N sing Y 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing Y 391 N doub Y 392 N sing Y 393 N sing N 394 N sing Y 395 N doub N 396 N sing Y 397 N doub N 398 N sing Y 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N doub N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 289 12566 10.1074/JBC.M113.497438 24627492 High-Resolution Structure and Double Electron-Electron Resonance of the Zebrafish Voltage Dependent Anion Channel 2 Reveal an Oligomeric Population. 2014 10.2210/pdb4bum/pdb pdb_00004bum 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2012-11-16 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 1.0 1.0 5.0.2 ALS 1.0 SYNCHROTRON ALS BEAMLINE 5.0.2 31148.822 VOLTAGE-DEPENDENT ANION CHANNEL 2 1 man polymer 229.402 LAURYL DIMETHYLAMINE-N-OXIDE 1 syn non-polymer 18.015 water 6 nat water ZEBRAFISH VDAC2 no no MAVPPAYADLGKSAKDIFNKGYGFGMVKLDVKTKSASGVEFKTSGSSNTDTSKVVGSLETKYKRSEYGLTFTEKWNTDNT LGTEINIEDQIAKGLKLTFDTTFSPNTGKKSGKVKTAYKREFVNLGCDVDFDFAGPTIHGAAVVGYEGWLAGYQMSFDTA KSKMTQNNFAVGYKTGDFQLHTNVNDGSEFGGSIYQKVSDKLETAVNLAWTAGSNSTRFGIAAKYQLDKDASISAKVNNT SLVGVGYTQSLRPGIKLTLSALVDGKSINSGGHKLGLGLELEAHHHHHH MAVPPAYADLGKSAKDIFNKGYGFGMVKLDVKTKSASGVEFKTSGSSNTDTSKVVGSLETKYKRSEYGLTFTEKWNTDNT LGTEINIEDQIAKGLKLTFDTTFSPNTGKKSGKVKTAYKREFVNLGCDVDFDFAGPTIHGAAVVGYEGWLAGYQMSFDTA KSKMTQNNFAVGYKTGDFQLHTNVNDGSEFGGSIYQKVSDKLETAVNLAWTAGSNSTRFGIAAKYQLDKDASISAKVNNT SLVGVGYTQSLRPGIKLTLSALVDGKSINSGGHKLGLGLELEAHHHHHH X polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ZEBRAFISH sample 7955 DANIO RERIO 1007065 ESCHERICHIA COLI M15 PQE60 PLASMID 1 2.17 43 NONE 8.0 100 MM TRISHCL (PH=8.0), 100 MM KCL, AND PEG 2000 IN A RANGE OF 19-24%, 0.011% N-UNDECYL-BETA-D-THIOMALTOPYRANOSIDE chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model struct_site repository Initial release Structure summary Database references Data collection Database references Derived calculations Other Refinement description 1 0 2014-03-26 1 1 2014-04-09 1 2 2014-05-14 1 3 2023-12-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "XA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 19-STRANDED BARREL THIS IS REPRESENTED BY A 20-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. PDBE Y PDBE 2013-06-21 REL REL LDA LAURYL DIMETHYLAMINE-N-OXIDE HOH water 3EMN PDB ENTRY 3EMN PDB experimental model LDA 1284 2 LDA LDA 1284 X HOH 2001 3 HOH HOH 2001 X HOH 2002 3 HOH HOH 2002 X HOH 2003 3 HOH HOH 2003 X HOH 2004 3 HOH HOH 2004 X HOH 2005 3 HOH HOH 2005 X HOH 2006 3 HOH HOH 2006 X MET 1 n 1 MET 1 X ALA 2 n 2 ALA 2 X VAL 3 n 3 VAL 3 X PRO 4 n 4 PRO 4 X PRO 5 n 5 PRO 5 X ALA 6 n 6 ALA 6 X TYR 7 n 7 TYR 7 X ALA 8 n 8 ALA 8 X ASP 9 n 9 ASP 9 X LEU 10 n 10 LEU 10 X GLY 11 n 11 GLY 11 X LYS 12 n 12 LYS 12 X SER 13 n 13 SER 13 X ALA 14 n 14 ALA 14 X LYS 15 n 15 LYS 15 X ASP 16 n 16 ASP 16 X ILE 17 n 17 ILE 17 X PHE 18 n 18 PHE 18 X ASN 19 n 19 ASN 19 X LYS 20 n 20 LYS 20 X GLY 21 n 21 GLY 21 X TYR 22 n 22 TYR 22 X GLY 23 n 23 GLY 23 X PHE 24 n 24 PHE 24 X GLY 25 n 25 GLY 25 X MET 26 n 26 MET 26 X VAL 27 n 27 VAL 27 X LYS 28 n 28 LYS 28 X LEU 29 n 29 LEU 29 X ASP 30 n 30 ASP 30 X VAL 31 n 31 VAL 31 X LYS 32 n 32 LYS 32 X THR 33 n 33 THR 33 X LYS 34 n 34 LYS 34 X SER 35 n 35 SER 35 X ALA 36 n 36 ALA 36 X SER 37 n 37 SER 37 X GLY 38 n 38 GLY 38 X VAL 39 n 39 VAL 39 X GLU 40 n 40 GLU 40 X PHE 41 n 41 PHE 41 X LYS 42 n 42 LYS 42 X THR 43 n 43 THR 43 X SER 44 n 44 SER 44 X GLY 45 n 45 GLY 45 X SER 46 n 46 SER 46 X SER 47 n 47 SER 47 X ASN 48 n 48 ASN 48 X THR 49 n 49 THR 49 X ASP 50 n 50 ASP 50 X THR 51 n 51 THR 51 X SER 52 n 52 SER 52 X LYS 53 n 53 LYS 53 X VAL 54 n 54 VAL 54 X VAL 55 n 55 VAL 55 X GLY 56 n 56 GLY 56 X SER 57 n 57 SER 57 X LEU 58 n 58 LEU 58 X GLU 59 n 59 GLU 59 X THR 60 n 60 THR 60 X LYS 61 n 61 LYS 61 X TYR 62 n 62 TYR 62 X LYS 63 n 63 LYS 63 X ARG 64 n 64 ARG 64 X SER 65 n 65 SER 65 X GLU 66 n 66 GLU 66 X TYR 67 n 67 TYR 67 X GLY 68 n 68 GLY 68 X LEU 69 n 69 LEU 69 X THR 70 n 70 THR 70 X PHE 71 n 71 PHE 71 X THR 72 n 72 THR 72 X GLU 73 n 73 GLU 73 X LYS 74 n 74 LYS 74 X TRP 75 n 75 TRP 75 X ASN 76 n 76 ASN 76 X THR 77 n 77 THR 77 X ASP 78 n 78 ASP 78 X ASN 79 n 79 ASN 79 X THR 80 n 80 THR 80 X LEU 81 n 81 LEU 81 X GLY 82 n 82 GLY 82 X THR 83 n 83 THR 83 X GLU 84 n 84 GLU 84 X ILE 85 n 85 ILE 85 X ASN 86 n 86 ASN 86 X ILE 87 n 87 ILE 87 X GLU 88 n 88 GLU 88 X ASP 89 n 89 ASP 89 X GLN 90 n 90 GLN 90 X ILE 91 n 91 ILE 91 X ALA 92 n 92 ALA 92 X LYS 93 n 93 LYS 93 X GLY 94 n 94 GLY 94 X LEU 95 n 95 LEU 95 X LYS 96 n 96 LYS 96 X LEU 97 n 97 LEU 97 X THR 98 n 98 THR 98 X PHE 99 n 99 PHE 99 X ASP 100 n 100 ASP 100 X THR 101 n 101 THR 101 X THR 102 n 102 THR 102 X PHE 103 n 103 PHE 103 X SER 104 n 104 SER 104 X PRO 105 n 105 PRO 105 X ASN 106 n 106 ASN 106 X THR 107 n 107 THR 107 X GLY 108 n 108 GLY 108 X LYS 109 n 109 LYS 109 X LYS 110 n 110 LYS 110 X SER 111 n 111 SER 111 X GLY 112 n 112 GLY 112 X LYS 113 n 113 LYS 113 X VAL 114 n 114 VAL 114 X LYS 115 n 115 LYS 115 X THR 116 n 116 THR 116 X ALA 117 n 117 ALA 117 X TYR 118 n 118 TYR 118 X LYS 119 n 119 LYS 119 X ARG 120 n 120 ARG 120 X GLU 121 n 121 GLU 121 X PHE 122 n 122 PHE 122 X VAL 123 n 123 VAL 123 X ASN 124 n 124 ASN 124 X LEU 125 n 125 LEU 125 X GLY 126 n 126 GLY 126 X CYS 127 n 127 CYS 127 X ASP 128 n 128 ASP 128 X VAL 129 n 129 VAL 129 X ASP 130 n 130 ASP 130 X PHE 131 n 131 PHE 131 X ASP 132 n 132 ASP 132 X PHE 133 n 133 PHE 133 X ALA 134 n 134 ALA 134 X GLY 135 n 135 GLY 135 X PRO 136 n 136 PRO 136 X THR 137 n 137 THR 137 X ILE 138 n 138 ILE 138 X HIS 139 n 139 HIS 139 X GLY 140 n 140 GLY 140 X ALA 141 n 141 ALA 141 X ALA 142 n 142 ALA 142 X VAL 143 n 143 VAL 143 X VAL 144 n 144 VAL 144 X GLY 145 n 145 GLY 145 X TYR 146 n 146 TYR 146 X GLU 147 n 147 GLU 147 X GLY 148 n 148 GLY 148 X TRP 149 n 149 TRP 149 X LEU 150 n 150 LEU 150 X ALA 151 n 151 ALA 151 X GLY 152 n 152 GLY 152 X TYR 153 n 153 TYR 153 X GLN 154 n 154 GLN 154 X MET 155 n 155 MET 155 X SER 156 n 156 SER 156 X PHE 157 n 157 PHE 157 X ASP 158 n 158 ASP 158 X THR 159 n 159 THR 159 X ALA 160 n 160 ALA 160 X LYS 161 n 161 LYS 161 X SER 162 n 162 SER 162 X LYS 163 n 163 LYS 163 X MET 164 n 164 MET 164 X THR 165 n 165 THR 165 X GLN 166 n 166 GLN 166 X ASN 167 n 167 ASN 167 X ASN 168 n 168 ASN 168 X PHE 169 n 169 PHE 169 X ALA 170 n 170 ALA 170 X VAL 171 n 171 VAL 171 X GLY 172 n 172 GLY 172 X TYR 173 n 173 TYR 173 X LYS 174 n 174 LYS 174 X THR 175 n 175 THR 175 X GLY 176 n 176 GLY 176 X ASP 177 n 177 ASP 177 X PHE 178 n 178 PHE 178 X GLN 179 n 179 GLN 179 X LEU 180 n 180 LEU 180 X HIS 181 n 181 HIS 181 X THR 182 n 182 THR 182 X ASN 183 n 183 ASN 183 X VAL 184 n 184 VAL 184 X ASN 185 n 185 ASN 185 X ASP 186 n 186 ASP 186 X GLY 187 n 187 GLY 187 X SER 188 n 188 SER 188 X GLU 189 n 189 GLU 189 X PHE 190 n 190 PHE 190 X GLY 191 n 191 GLY 191 X GLY 192 n 192 GLY 192 X SER 193 n 193 SER 193 X ILE 194 n 194 ILE 194 X TYR 195 n 195 TYR 195 X GLN 196 n 196 GLN 196 X LYS 197 n 197 LYS 197 X VAL 198 n 198 VAL 198 X SER 199 n 199 SER 199 X ASP 200 n 200 ASP 200 X LYS 201 n 201 LYS 201 X LEU 202 n 202 LEU 202 X GLU 203 n 203 GLU 203 X THR 204 n 204 THR 204 X ALA 205 n 205 ALA 205 X VAL 206 n 206 VAL 206 X ASN 207 n 207 ASN 207 X LEU 208 n 208 LEU 208 X ALA 209 n 209 ALA 209 X TRP 210 n 210 TRP 210 X THR 211 n 211 THR 211 X ALA 212 n 212 ALA 212 X GLY 213 n 213 GLY 213 X SER 214 n 214 SER 214 X ASN 215 n 215 ASN 215 X SER 216 n 216 SER 216 X THR 217 n 217 THR 217 X ARG 218 n 218 ARG 218 X PHE 219 n 219 PHE 219 X GLY 220 n 220 GLY 220 X ILE 221 n 221 ILE 221 X ALA 222 n 222 ALA 222 X ALA 223 n 223 ALA 223 X LYS 224 n 224 LYS 224 X TYR 225 n 225 TYR 225 X GLN 226 n 226 GLN 226 X LEU 227 n 227 LEU 227 X ASP 228 n 228 ASP 228 X LYS 229 n 229 LYS 229 X ASP 230 n 230 ASP 230 X ALA 231 n 231 ALA 231 X SER 232 n 232 SER 232 X ILE 233 n 233 ILE 233 X SER 234 n 234 SER 234 X ALA 235 n 235 ALA 235 X LYS 236 n 236 LYS 236 X VAL 237 n 237 VAL 237 X ASN 238 n 238 ASN 238 X ASN 239 n 239 ASN 239 X THR 240 n 240 THR 240 X SER 241 n 241 SER 241 X LEU 242 n 242 LEU 242 X VAL 243 n 243 VAL 243 X GLY 244 n 244 GLY 244 X VAL 245 n 245 VAL 245 X GLY 246 n 246 GLY 246 X TYR 247 n 247 TYR 247 X THR 248 n 248 THR 248 X GLN 249 n 249 GLN 249 X SER 250 n 250 SER 250 X LEU 251 n 251 LEU 251 X ARG 252 n 252 ARG 252 X PRO 253 n 253 PRO 253 X GLY 254 n 254 GLY 254 X ILE 255 n 255 ILE 255 X LYS 256 n 256 LYS 256 X LEU 257 n 257 LEU 257 X THR 258 n 258 THR 258 X LEU 259 n 259 LEU 259 X SER 260 n 260 SER 260 X ALA 261 n 261 ALA 261 X LEU 262 n 262 LEU 262 X VAL 263 n 263 VAL 263 X ASP 264 n 264 ASP 264 X GLY 265 n 265 GLY 265 X LYS 266 n 266 LYS 266 X SER 267 n 267 SER 267 X ILE 268 n 268 ILE 268 X ASN 269 n 269 ASN 269 X SER 270 n 270 SER 270 X GLY 271 n 271 GLY 271 X GLY 272 n 272 GLY 272 X HIS 273 n 273 HIS 273 X LYS 274 n 274 LYS 274 X LEU 275 n 275 LEU 275 X GLY 276 n 276 GLY 276 X LEU 277 n 277 LEU 277 X GLY 278 n 278 GLY 278 X LEU 279 n 279 LEU 279 X GLU 280 n 280 GLU 280 X LEU 281 n 281 LEU 281 X GLU 282 n 282 GLU 282 X ALA 283 n 283 ALA 283 X n 284 284 X n 285 285 X n 286 286 X n 287 287 X n 288 288 X n 289 289 X 0.8914 -1.2934 -0.0109 0.3200 0.1807 0.3051 0.0190 0.3348 0.0546 0.0457 -0.2622 0.1245 -0.0307 0.7821 0.1400 0.3681 -0.1195 -0.1295 0.1758 0.0251 0.3980 refined -5.5397 23.2185 -4.8548 X-RAY DIFFRACTION 2.1018 -1.4824 0.7969 0.8764 0.1941 2.3409 0.0792 0.1539 -0.1143 0.0801 -0.1542 0.1002 0.1779 0.2581 0.1019 0.2825 -0.0994 -0.0016 0.3328 0.0052 0.3131 refined -8.4868 22.3611 -20.3370 X-RAY DIFFRACTION 2.2358 0.6696 0.1455 3.4539 0.6128 3.9017 -0.6797 -0.2154 -0.0852 -0.5919 0.4535 0.1481 -0.2356 -0.7575 0.1507 0.3439 -0.0939 0.0660 0.1228 0.0325 0.2848 refined -26.7935 27.4114 -10.2745 X-RAY DIFFRACTION 4.0996 0.3812 -0.1434 1.2523 0.3479 2.2056 0.1163 -0.0794 0.1046 0.2365 -0.0290 -0.0674 -0.0816 -0.2369 -0.0577 0.3898 -0.0682 -0.0586 0.1352 0.0537 0.1559 refined -10.2389 20.7934 8.9259 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 CHAIN X AND (RESID 1 THROUGH 48 ) X-RAY DIFFRACTION 2 CHAIN X AND (RESID 49 THROUGH 119 ) X-RAY DIFFRACTION 3 CHAIN X AND (RESID 120 THROUGH 174 ) X-RAY DIFFRACTION 4 CHAIN X AND (RESID 175 THROUGH 283 ) author_and_software_defined_assembly PISA 2 dimeric 1250 -14.7 32470 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 X N THR 33 A N THR 33 X O PHE 41 A O PHE 41 X N SER 46 A N SER 46 X O VAL 55 A O VAL 55 X N ARG 64 A N ARG 64 X O LEU 69 A O LEU 69 X N LYS 74 A N LYS 74 X O GLY 82 A O GLY 82 X N ILE 87 A N ILE 87 X O LEU 97 A O LEU 97 X N THR 102 A N THR 102 X O SER 111 A O SER 111 X N ARG 120 A N ARG 120 X O VAL 123 A O VAL 123 X N ASP 130 A N ASP 130 X O THR 137 A O THR 137 X N TYR 146 A N TYR 146 X O TRP 149 A O TRP 149 X N ASP 158 A N ASP 158 X O LYS 163 A O LYS 163 X N TYR 173 A N TYR 173 X O LEU 180 A O LEU 180 X N ASN 185 A N ASN 185 X O GLU 189 A O GLU 189 X N GLN 196 A N GLN 196 X O THR 204 A O THR 204 X N THR 211 A N THR 211 X O SER 216 A O SER 216 X N TYR 225 A N TYR 225 X O ILE 233 A O ILE 233 X N ASN 238 A N ASN 238 X O LEU 242 A O LEU 242 X N LEU 251 A N LEU 251 X O ILE 255 A O ILE 255 X N LEU 262 A N LEU 262 X O LYS 274 A O LYS 274 X N LEU 277 A N LEU 277 X O MET 26 A O MET 26 1 X CG PHE 133 A CG PHE 133 1 Y 1 X CD1 PHE 133 A CD1 PHE 133 1 Y 1 X CD2 PHE 133 A CD2 PHE 133 1 Y 1 X CE1 PHE 133 A CE1 PHE 133 1 Y 1 X CE2 PHE 133 A CE2 PHE 133 1 Y 1 X CZ PHE 133 A CZ PHE 133 1 Y 1 X CG LYS 266 A CG LYS 266 1 Y 1 X CD LYS 266 A CD LYS 266 1 Y 1 X CE LYS 266 A CE LYS 266 1 Y 1 X NZ LYS 266 A NZ LYS 266 1 Y 1 X CG1 ILE 268 A CG1 ILE 268 1 Y 1 X CG2 ILE 268 A CG2 ILE 268 1 Y 1 X CD1 ILE 268 A CD1 ILE 268 1 Y 1 X CG ASN 269 A CG ASN 269 1 Y 1 X OD1 ASN 269 A OD1 ASN 269 1 Y 1 X ND2 ASN 269 A ND2 ASN 269 1 Y 1 X C9 LDA 1284 B C9 LDA 1 1 N 1 X C10 LDA 1284 B C10 LDA 1 1 N 1 X C11 LDA 1284 B C11 LDA 1 1 N 1 X C12 LDA 1284 B C12 LDA 1 1 N 1 X MET 1 A MET 1 0 Y 1 X HIS 284 A HIS 284 1 Y 1 X HIS 285 A HIS 285 1 Y 1 X HIS 286 A HIS 286 1 Y 1 X HIS 287 A HIS 287 1 Y 1 X HIS 288 A HIS 288 1 Y 1 X HIS 289 A HIS 289 1 Y 1 X ASP 50 -93.66 -71.84 1 X ARG 64 -152.46 80.90 1 X GLN 90 -129.46 -52.37 1 X ALA 92 -167.27 -168.81 1 X PRO 105 -64.49 3.96 1 X PHE 122 65.99 -6.70 1 X ALA 134 -113.85 66.63 1 X LEU 227 -51.35 -78.55 1 X ASP 228 -113.17 -163.63 1 X ILE 268 -150.39 -65.83 50.95 SOME RESIDUES WERE TRIMMED DUE TO VERY WEAK ELECTRON DENSITY OF SIDE-CHAINS. THE LOOP BETWEEN RESIDUES 266-272 IS VERY MOBILE. WE ARE CERTAIN OF THE GENERAL LOCATION IN WHICH IT IS MODELLED, BUT IN SOLUTION IT COULD SAMPLE MANY POSITIONS AROUND THIS VICINITY. 0.2822 0.2455 0.2492 2.801 51.286 1369 13684 10.00 97.98 0.37 1 2.00 MOLECULAR REPLACEMENT 27.48 0.90 1.11 PDB ENTRY 3EMN ML FLAT BULK SOLVENT MODEL 2.801 51.286 6 2137 12 0 2119 0.004 2184 0.871 2948 14.316 780 0.062 327 0.004 376 0.3534 0.3123 2.9007 139 1251 100.00 0.3003 0.2987 3.0168 136 1222 100.00 0.3359 0.3106 3.1541 136 1232 100.00 0.3125 0.2764 3.3204 133 1209 100.00 0.2497 0.2381 3.5284 137 1227 100.00 0.2977 0.2464 3.8007 141 1260 100.00 0.3089 0.2568 4.1830 136 1228 99.00 0.2433 0.2204 4.7879 140 1253 99.00 0.2392 0.2233 6.0308 136 1222 95.00 0.3034 0.2355 51.2944 135 1211 89.00 70.86 2.80 51.29 4BUM 13686 2.0 0.08 1 13.00 3.56 98.0 refinement PHENIX (PHENIX.REFINE) phasing PHENIX Crystal structure of the Voltage Dependant Anion Channel 2 from zebrafish. 1 N N 2 N N 3 N N X ALA 6 A ALA 6 HELX_P X LEU 10 A LEU 10 5 1 5 X GLY 11 A GLY 11 HELX_P X LYS 20 A LYS 20 1 2 10 MEMBRANE PROTEIN MEMBRANE PROTEIN, MITOCHONDRIA, PORIN, MEMBRANE, DETERGENT, RECOMBINANT X LYS 93 A LYS 93 1 X GLY 94 A GLY 94 -2.11 X GLY 135 A GLY 135 1 X PRO 136 A PRO 136 -5.87 X GLY 265 A GLY 265 1 X LYS 266 A LYS 266 -1.36 Q8AWD0_DANRE UNP 1 Q8AWD0 1 283 4BUM 1 283 Q8AWD0 X 1 1 283 1 expression tag HIS 284 4BUM X Q8AWD0 UNP 284 1 expression tag HIS 285 4BUM X Q8AWD0 UNP 285 1 expression tag HIS 286 4BUM X Q8AWD0 UNP 286 1 expression tag HIS 287 4BUM X Q8AWD0 UNP 287 1 expression tag HIS 288 4BUM X Q8AWD0 UNP 288 1 expression tag HIS 289 4BUM X Q8AWD0 UNP 289 20 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel X MET 26 A MET 26 X LYS 34 A LYS 34 X GLU 40 A GLU 40 X ASN 48 A ASN 48 X VAL 54 A VAL 54 X ARG 64 A ARG 64 X LEU 69 A LEU 69 X ASN 76 A ASN 76 X LEU 81 A LEU 81 X GLU 88 A GLU 88 X LEU 95 A LEU 95 X PHE 103 A PHE 103 X LYS 110 A LYS 110 X ARG 120 A ARG 120 X VAL 123 A VAL 123 X PHE 131 A PHE 131 X THR 137 A THR 137 X TYR 146 A TYR 146 X TRP 149 A TRP 149 X ASP 158 A ASP 158 X LYS 163 A LYS 163 X LYS 174 A LYS 174 X PHE 178 A PHE 178 X ASN 185 A ASN 185 X GLU 189 A GLU 189 X LYS 197 A LYS 197 X LEU 202 A LEU 202 X THR 211 A THR 211 X SER 216 A SER 216 X TYR 225 A TYR 225 X ALA 231 A ALA 231 X ASN 238 A ASN 238 X LEU 242 A LEU 242 X ARG 252 A ARG 252 X ILE 255 A ILE 255 X ASP 264 A ASP 264 X LYS 274 A LYS 274 X ALA 283 A ALA 283 X MET 26 A MET 26 X LYS 34 A LYS 34 BINDING SITE FOR RESIDUE LDA X 1284 X LDA 1284 Software 2 X VAL 54 A VAL 54 2 4_555 X HIS 273 A HIS 273 2 1_555 154 P 32 2 1