0.012817
0.000000
0.000000
0.000000
0.007614
0.000000
0.000000
0.000000
0.013071
0.00000
0.00000
0.00000
Nguyen, G.T.T.
Gertz, M.
Weyand, M.
Steegborn, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
78.023
131.329
76.508
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C17 H25 N5 O15 P2
601.352
(2R,3R,4S,5R)-5-({[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}METHYL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL ACETATE
ACETYL-RIBOSYL-ADP
non-polymer
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
N
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
S
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
O
N
151
N
C
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
Y
166
N
C
Y
167
N
N
Y
168
N
C
Y
169
N
C
Y
170
N
N
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
S
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
N
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
S
N
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
O
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
S
N
346
N
O
N
347
N
O
N
348
N
O
N
349
N
O
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
R
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
N
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
N
405
N
O
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
O
N
438
N
C
N
439
N
C
N
440
N
O
N
441
R
C
N
442
R
C
N
443
S
C
N
444
N
O
N
445
N
O
N
446
N
O
N
447
R
C
N
448
N
C
N
449
N
O
N
450
R
P
N
451
N
O
N
452
N
O
N
453
N
O
N
454
R
P
N
455
N
O
N
456
N
O
N
457
N
C
N
458
R
C
N
459
N
O
N
460
R
C
Y
461
N
N
Y
462
N
C
Y
463
N
N
Y
464
N
C
Y
465
N
C
Y
466
N
N
Y
467
N
C
Y
468
N
N
Y
469
N
C
N
470
N
N
N
471
R
C
N
472
S
C
N
473
N
O
N
474
N
O
N
475
N
O
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
Y
162
N
sing
Y
163
N
doub
Y
164
N
doub
N
165
N
sing
Y
166
N
sing
N
167
N
sing
Y
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
Y
286
N
doub
Y
287
N
sing
Y
288
N
sing
N
289
N
sing
Y
290
N
doub
N
291
N
sing
Y
292
N
doub
N
293
N
sing
Y
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
Y
359
N
doub
Y
360
N
sing
Y
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
Y
387
N
doub
Y
388
N
sing
Y
389
N
sing
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
doub
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
doub
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
Y
463
N
sing
Y
464
N
sing
Y
465
N
doub
N
466
N
sing
Y
467
N
sing
Y
468
N
sing
Y
469
N
doub
Y
470
N
doub
Y
471
N
sing
Y
472
N
doub
N
473
N
sing
Y
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
US
Proc. Natl. Acad. Sci. U.S.A.
PNASA6
0040
1091-6490
110
E2772
E2781
10.1073/pnas.1303628110
23840057
Ex-527 inhibits Sirtuins by exploiting their unique NAD+-dependent deacetylation mechanism.
2013
10.2210/pdb4bvg/pdb
pdb_00004bvg
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
COLLIMATOR
CCD
2012-03-21
MARMOSAIC 225 mm CCD
SI(111) MONOCHROMATOR
SINGLE WAVELENGTH
M
x-ray
1
0.918
1.0
14.1
BESSY
0.918
SYNCHROTRON
BESSY BEAMLINE 14.1
31484.219
NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL
3.5.1.-
RESIDUES 116-399
1
man
polymer
1207.494
ACETYL-COENZYME A SYNTHETASE 2-LIKE, MITOCHONDRIAL
6.2.1.1
RESIDUES 638-647
1
syn
polymer
62.068
1,2-ETHANEDIOL
7
syn
non-polymer
92.094
GLYCEROL
3
syn
non-polymer
96.063
SULFATE ION
2
syn
non-polymer
106.120
DI(HYDROXYETHYL)ETHER
1
syn
non-polymer
65.409
ZINC ION
1
syn
non-polymer
601.352
(2R,3R,4S,5R)-5-({[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}METHYL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL ACETATE
1
syn
non-polymer
18.015
water
56
nat
water
SIRT3, HSIRT3, REGULATORY PROTEIN SIR2 HOMOLOG 3, SIR2-LIKE PROTEIN 3
ACETYL-LYSINE ACS2-PEPTIDE, ACETATE--COA LIGASE 2, ACETYL-C ACECS2, ACYL-COA SYNTHETASE SHORT-CHAIN FAMILY MEMBER 1
no
no
GSSDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTL
AKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMAD
RVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHP
RSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK
GSSDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTL
AKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMAD
RVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHP
RSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK
A
polypeptide(L)
no
no
TRSGKVMRRL
TRSGKVMRRL
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
469008
ESCHERICHIA COLI
BL21(DE3)
ROSETTA2
PLASMID
PVFT3S
1
3.00
58.97
NONE
VAPOR DIFFUSION
5.5
0.2 M (NH4)2SO4, 0.1M BISTRIS PH 5.5, 21% PEG 3350
293
atom_site
chem_comp
citation
citation_author
entity
exptl_crystal_grow
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly
pdbx_struct_assembly_gen
pdbx_struct_assembly_prop
struct_conn
struct_site_gen
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
repository
Initial release
Database references
Atomic model
Data collection
Database references
Derived calculations
Experimental preparation
Non-polymer description
Structure summary
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2013-07-17
1
1
2013-08-07
2
0
2019-01-30
2
1
2023-12-20
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.type
_citation.journal_abbrev
_citation.journal_id_ISSN
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.title
_citation_author.name
_entity.pdbx_description
_exptl_crystal_grow.method
_exptl_crystal_grow.temp
_pdbx_entity_nonpoly.comp_id
_pdbx_entity_nonpoly.name
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_site_gen.auth_comp_id
_struct_site_gen.label_comp_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF SIR2 IN COMPLEX WITH EX-527 AND 2'-O-ACETYL-ADP-RIBOSE
CRYSTAL STRUCTURE OF SIRT3 IN COMPLEX WITH EX-527 AND NAD
CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH EX- 527 AND ADP-RIBOSE
CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THIOALKYLIMIDATE FORMED FROM THIO-ACETYL-LYSINE ACS2- PEPTIDE
CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THIOALKYLIMIDATE FORMED FROM THIO-ACETYL-LYSINE ACS2- PEPTIDE CRYSTALLIZED IN PRESENCE OF THE INHIBITOR EX- 527
CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THE INHIBITOR EX-527 AND 2'-O-ACETYL-ADP-RIBOSE
SIR2 COMPLEX STRUCTURE MIXTURE OF EX-527 INHIBITOR AND REACTION PRODUCTS OR OF REACTION SUBSTRATES P53 PEPTIDE AND NAD
PDBE
Y
PDBE
2013-06-25
REL
REL
EDO
1,2-ETHANEDIOL
GOL
GLYCEROL
SO4
SULFATE ION
PEG
DI(HYDROXYETHYL)ETHER
ZN
ZINC ION
XYQ
(2R,3R,4S,5R)-5-({[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}METHYL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL ACETATE
HOH
water
9606
HUMAN
HOMO SAPIENS
sample
3GLT
PDB ENTRY 3GLT
PDB
experimental model
EDO
1396
3
EDO
EDO
1396
A
EDO
1397
3
EDO
EDO
1397
A
EDO
1398
3
EDO
EDO
1398
A
EDO
1399
3
EDO
EDO
1399
A
GOL
1400
4
GOL
GOL
1400
A
GOL
1401
4
GOL
GOL
1401
A
GOL
1402
4
GOL
GOL
1402
A
EDO
1403
3
EDO
EDO
1403
A
EDO
1404
3
EDO
EDO
1404
A
SO4
1405
5
SO4
SO4
1405
A
SO4
1406
5
SO4
SO4
1406
A
EDO
1407
3
EDO
EDO
1407
A
PEG
1408
6
PEG
PEG
1408
A
ZN
1409
7
ZN
ZN
1409
A
OAD
1000
8
XYQ
XYQ
1000
B
HOH
2001
9
HOH
HOH
2001
A
HOH
2002
9
HOH
HOH
2002
A
HOH
2003
9
HOH
HOH
2003
A
HOH
2004
9
HOH
HOH
2004
A
HOH
2005
9
HOH
HOH
2005
A
HOH
2006
9
HOH
HOH
2006
A
HOH
2007
9
HOH
HOH
2007
A
HOH
2008
9
HOH
HOH
2008
A
HOH
2009
9
HOH
HOH
2009
A
HOH
2010
9
HOH
HOH
2010
A
HOH
2011
9
HOH
HOH
2011
A
HOH
2012
9
HOH
HOH
2012
A
HOH
2013
9
HOH
HOH
2013
A
HOH
2014
9
HOH
HOH
2014
A
HOH
2015
9
HOH
HOH
2015
A
HOH
2016
9
HOH
HOH
2016
A
HOH
2017
9
HOH
HOH
2017
A
HOH
2018
9
HOH
HOH
2018
A
HOH
2019
9
HOH
HOH
2019
A
HOH
2020
9
HOH
HOH
2020
A
HOH
2021
9
HOH
HOH
2021
A
HOH
2022
9
HOH
HOH
2022
A
HOH
2023
9
HOH
HOH
2023
A
HOH
2024
9
HOH
HOH
2024
A
HOH
2025
9
HOH
HOH
2025
A
HOH
2026
9
HOH
HOH
2026
A
HOH
2027
9
HOH
HOH
2027
A
HOH
2028
9
HOH
HOH
2028
A
HOH
2029
9
HOH
HOH
2029
A
HOH
2030
9
HOH
HOH
2030
A
HOH
2031
9
HOH
HOH
2031
A
HOH
2032
9
HOH
HOH
2032
A
HOH
2033
9
HOH
HOH
2033
A
HOH
2034
9
HOH
HOH
2034
A
HOH
2035
9
HOH
HOH
2035
A
HOH
2036
9
HOH
HOH
2036
A
HOH
2037
9
HOH
HOH
2037
A
HOH
2038
9
HOH
HOH
2038
A
HOH
2039
9
HOH
HOH
2039
A
HOH
2040
9
HOH
HOH
2040
A
HOH
2041
9
HOH
HOH
2041
A
HOH
2042
9
HOH
HOH
2042
A
HOH
2043
9
HOH
HOH
2043
A
HOH
2044
9
HOH
HOH
2044
A
HOH
2045
9
HOH
HOH
2045
A
HOH
2046
9
HOH
HOH
2046
A
HOH
2047
9
HOH
HOH
2047
A
HOH
2048
9
HOH
HOH
2048
A
HOH
2049
9
HOH
HOH
2049
A
HOH
2050
9
HOH
HOH
2050
A
HOH
2051
9
HOH
HOH
2051
A
HOH
2052
9
HOH
HOH
2052
A
HOH
2053
9
HOH
HOH
2053
A
HOH
2054
9
HOH
HOH
2054
A
HOH
2055
9
HOH
HOH
2055
A
HOH
2056
9
HOH
HOH
2056
A
n
1
116
A
n
2
117
A
n
3
118
A
n
4
119
A
n
5
120
A
n
6
121
A
LYS
122
n
7
LYS
122
A
LEU
123
n
8
LEU
123
A
SER
124
n
9
SER
124
A
LEU
125
n
10
LEU
125
A
GLN
126
n
11
GLN
126
A
ASP
127
n
12
ASP
127
A
VAL
128
n
13
VAL
128
A
ALA
129
n
14
ALA
129
A
GLU
130
n
15
GLU
130
A
LEU
131
n
16
LEU
131
A
ILE
132
n
17
ILE
132
A
ARG
133
n
18
ARG
133
A
ALA
134
n
19
ALA
134
A
ARG
135
n
20
ARG
135
A
ALA
136
n
21
ALA
136
A
CYS
137
n
22
CYS
137
A
GLN
138
n
23
GLN
138
A
ARG
139
n
24
ARG
139
A
VAL
140
n
25
VAL
140
A
VAL
141
n
26
VAL
141
A
VAL
142
n
27
VAL
142
A
MET
143
n
28
MET
143
A
VAL
144
n
29
VAL
144
A
GLY
145
n
30
GLY
145
A
ALA
146
n
31
ALA
146
A
GLY
147
n
32
GLY
147
A
ILE
148
n
33
ILE
148
A
SER
149
n
34
SER
149
A
THR
150
n
35
THR
150
A
PRO
151
n
36
PRO
151
A
SER
152
n
37
SER
152
A
GLY
153
n
38
GLY
153
A
ILE
154
n
39
ILE
154
A
PRO
155
n
40
PRO
155
A
ASP
156
n
41
ASP
156
A
PHE
157
n
42
PHE
157
A
ARG
158
n
43
ARG
158
A
SER
159
n
44
SER
159
A
PRO
160
n
45
PRO
160
A
GLY
161
n
46
GLY
161
A
SER
162
n
47
SER
162
A
GLY
163
n
48
GLY
163
A
LEU
164
n
49
LEU
164
A
TYR
165
n
50
TYR
165
A
SER
166
n
51
SER
166
A
ASN
167
n
52
ASN
167
A
LEU
168
n
53
LEU
168
A
GLN
169
n
54
GLN
169
A
GLN
170
n
55
GLN
170
A
TYR
171
n
56
TYR
171
A
ASP
172
n
57
ASP
172
A
LEU
173
n
58
LEU
173
A
PRO
174
n
59
PRO
174
A
TYR
175
n
60
TYR
175
A
PRO
176
n
61
PRO
176
A
GLU
177
n
62
GLU
177
A
ALA
178
n
63
ALA
178
A
ILE
179
n
64
ILE
179
A
PHE
180
n
65
PHE
180
A
GLU
181
n
66
GLU
181
A
LEU
182
n
67
LEU
182
A
PRO
183
n
68
PRO
183
A
PHE
184
n
69
PHE
184
A
PHE
185
n
70
PHE
185
A
PHE
186
n
71
PHE
186
A
HIS
187
n
72
HIS
187
A
ASN
188
n
73
ASN
188
A
PRO
189
n
74
PRO
189
A
LYS
190
n
75
LYS
190
A
PRO
191
n
76
PRO
191
A
PHE
192
n
77
PHE
192
A
PHE
193
n
78
PHE
193
A
THR
194
n
79
THR
194
A
LEU
195
n
80
LEU
195
A
ALA
196
n
81
ALA
196
A
LYS
197
n
82
LYS
197
A
GLU
198
n
83
GLU
198
A
LEU
199
n
84
LEU
199
A
TYR
200
n
85
TYR
200
A
PRO
201
n
86
PRO
201
A
GLY
202
n
87
GLY
202
A
ASN
203
n
88
ASN
203
A
TYR
204
n
89
TYR
204
A
LYS
205
n
90
LYS
205
A
PRO
206
n
91
PRO
206
A
ASN
207
n
92
ASN
207
A
VAL
208
n
93
VAL
208
A
THR
209
n
94
THR
209
A
HIS
210
n
95
HIS
210
A
TYR
211
n
96
TYR
211
A
PHE
212
n
97
PHE
212
A
LEU
213
n
98
LEU
213
A
ARG
214
n
99
ARG
214
A
LEU
215
n
100
LEU
215
A
LEU
216
n
101
LEU
216
A
HIS
217
n
102
HIS
217
A
ASP
218
n
103
ASP
218
A
LYS
219
n
104
LYS
219
A
GLY
220
n
105
GLY
220
A
LEU
221
n
106
LEU
221
A
LEU
222
n
107
LEU
222
A
LEU
223
n
108
LEU
223
A
ARG
224
n
109
ARG
224
A
LEU
225
n
110
LEU
225
A
TYR
226
n
111
TYR
226
A
THR
227
n
112
THR
227
A
GLN
228
n
113
GLN
228
A
ASN
229
n
114
ASN
229
A
ILE
230
n
115
ILE
230
A
ASP
231
n
116
ASP
231
A
GLY
232
n
117
GLY
232
A
LEU
233
n
118
LEU
233
A
GLU
234
n
119
GLU
234
A
ARG
235
n
120
ARG
235
A
VAL
236
n
121
VAL
236
A
SER
237
n
122
SER
237
A
GLY
238
n
123
GLY
238
A
ILE
239
n
124
ILE
239
A
PRO
240
n
125
PRO
240
A
ALA
241
n
126
ALA
241
A
SER
242
n
127
SER
242
A
LYS
243
n
128
LYS
243
A
LEU
244
n
129
LEU
244
A
VAL
245
n
130
VAL
245
A
GLU
246
n
131
GLU
246
A
ALA
247
n
132
ALA
247
A
HIS
248
n
133
HIS
248
A
GLY
249
n
134
GLY
249
A
THR
250
n
135
THR
250
A
PHE
251
n
136
PHE
251
A
ALA
252
n
137
ALA
252
A
SER
253
n
138
SER
253
A
ALA
254
n
139
ALA
254
A
THR
255
n
140
THR
255
A
CYS
256
n
141
CYS
256
A
THR
257
n
142
THR
257
A
VAL
258
n
143
VAL
258
A
CYS
259
n
144
CYS
259
A
GLN
260
n
145
GLN
260
A
ARG
261
n
146
ARG
261
A
PRO
262
n
147
PRO
262
A
PHE
263
n
148
PHE
263
A
PRO
264
n
149
PRO
264
A
GLY
265
n
150
GLY
265
A
GLU
266
n
151
GLU
266
A
ASP
267
n
152
ASP
267
A
ILE
268
n
153
ILE
268
A
ARG
269
n
154
ARG
269
A
ALA
270
n
155
ALA
270
A
ASP
271
n
156
ASP
271
A
VAL
272
n
157
VAL
272
A
MET
273
n
158
MET
273
A
ALA
274
n
159
ALA
274
A
ASP
275
n
160
ASP
275
A
ARG
276
n
161
ARG
276
A
VAL
277
n
162
VAL
277
A
PRO
278
n
163
PRO
278
A
ARG
279
n
164
ARG
279
A
CYS
280
n
165
CYS
280
A
PRO
281
n
166
PRO
281
A
VAL
282
n
167
VAL
282
A
CYS
283
n
168
CYS
283
A
THR
284
n
169
THR
284
A
GLY
285
n
170
GLY
285
A
VAL
286
n
171
VAL
286
A
VAL
287
n
172
VAL
287
A
LYS
288
n
173
LYS
288
A
PRO
289
n
174
PRO
289
A
ASP
290
n
175
ASP
290
A
ILE
291
n
176
ILE
291
A
VAL
292
n
177
VAL
292
A
PHE
293
n
178
PHE
293
A
PHE
294
n
179
PHE
294
A
GLY
295
n
180
GLY
295
A
GLU
296
n
181
GLU
296
A
PRO
297
n
182
PRO
297
A
LEU
298
n
183
LEU
298
A
PRO
299
n
184
PRO
299
A
GLN
300
n
185
GLN
300
A
ARG
301
n
186
ARG
301
A
PHE
302
n
187
PHE
302
A
LEU
303
n
188
LEU
303
A
LEU
304
n
189
LEU
304
A
HIS
305
n
190
HIS
305
A
VAL
306
n
191
VAL
306
A
VAL
307
n
192
VAL
307
A
ASP
308
n
193
ASP
308
A
PHE
309
n
194
PHE
309
A
PRO
310
n
195
PRO
310
A
MET
311
n
196
MET
311
A
ALA
312
n
197
ALA
312
A
ASP
313
n
198
ASP
313
A
LEU
314
n
199
LEU
314
A
LEU
315
n
200
LEU
315
A
LEU
316
n
201
LEU
316
A
ILE
317
n
202
ILE
317
A
LEU
318
n
203
LEU
318
A
GLY
319
n
204
GLY
319
A
THR
320
n
205
THR
320
A
SER
321
n
206
SER
321
A
LEU
322
n
207
LEU
322
A
GLU
323
n
208
GLU
323
A
VAL
324
n
209
VAL
324
A
GLU
325
n
210
GLU
325
A
PRO
326
n
211
PRO
326
A
PHE
327
n
212
PHE
327
A
ALA
328
n
213
ALA
328
A
SER
329
n
214
SER
329
A
LEU
330
n
215
LEU
330
A
THR
331
n
216
THR
331
A
GLU
332
n
217
GLU
332
A
ALA
333
n
218
ALA
333
A
VAL
334
n
219
VAL
334
A
ARG
335
n
220
ARG
335
A
SER
336
n
221
SER
336
A
SER
337
n
222
SER
337
A
VAL
338
n
223
VAL
338
A
PRO
339
n
224
PRO
339
A
ARG
340
n
225
ARG
340
A
LEU
341
n
226
LEU
341
A
LEU
342
n
227
LEU
342
A
ILE
343
n
228
ILE
343
A
ASN
344
n
229
ASN
344
A
ARG
345
n
230
ARG
345
A
ASP
346
n
231
ASP
346
A
LEU
347
n
232
LEU
347
A
VAL
348
n
233
VAL
348
A
GLY
349
n
234
GLY
349
A
PRO
350
n
235
PRO
350
A
LEU
351
n
236
LEU
351
A
ALA
352
n
237
ALA
352
A
TRP
353
n
238
TRP
353
A
HIS
354
n
239
HIS
354
A
PRO
355
n
240
PRO
355
A
ARG
356
n
241
ARG
356
A
SER
357
n
242
SER
357
A
ARG
358
n
243
ARG
358
A
ASP
359
n
244
ASP
359
A
VAL
360
n
245
VAL
360
A
ALA
361
n
246
ALA
361
A
GLN
362
n
247
GLN
362
A
LEU
363
n
248
LEU
363
A
GLY
364
n
249
GLY
364
A
ASP
365
n
250
ASP
365
A
VAL
366
n
251
VAL
366
A
VAL
367
n
252
VAL
367
A
HIS
368
n
253
HIS
368
A
GLY
369
n
254
GLY
369
A
VAL
370
n
255
VAL
370
A
GLU
371
n
256
GLU
371
A
SER
372
n
257
SER
372
A
LEU
373
n
258
LEU
373
A
VAL
374
n
259
VAL
374
A
GLU
375
n
260
GLU
375
A
LEU
376
n
261
LEU
376
A
LEU
377
n
262
LEU
377
A
GLY
378
n
263
GLY
378
A
TRP
379
n
264
TRP
379
A
THR
380
n
265
THR
380
A
GLU
381
n
266
GLU
381
A
GLU
382
n
267
GLU
382
A
MET
383
n
268
MET
383
A
ARG
384
n
269
ARG
384
A
ASP
385
n
270
ASP
385
A
LEU
386
n
271
LEU
386
A
VAL
387
n
272
VAL
387
A
GLN
388
n
273
GLN
388
A
ARG
389
n
274
ARG
389
A
GLU
390
n
275
GLU
390
A
THR
391
n
276
THR
391
A
GLY
392
n
277
GLY
392
A
LYS
393
n
278
LYS
393
A
LEU
394
n
279
LEU
394
A
n
280
395
A
n
281
396
A
n
282
397
A
n
283
398
A
n
284
399
A
THR
-4
n
1
THR
-4
B
ARG
-3
n
2
ARG
-3
B
SER
-2
n
3
SER
-2
B
GLY
-1
n
4
GLY
-1
B
LYS
0
n
5
LYS
0
B
VAL
1
n
6
VAL
1
B
MET
2
n
7
MET
2
B
ARG
3
n
8
ARG
3
B
n
9
4
B
n
10
5
B
author_and_software_defined_assembly
PISA
2
dimeric
4720
-9
13220
A
CYS
256
A
SG
CYS
141
1_555
A
ZN
1409
P
ZN
ZN
1_555
A
CYS
259
A
SG
CYS
144
1_555
101.4
A
CYS
256
A
SG
CYS
141
1_555
A
ZN
1409
P
ZN
ZN
1_555
A
CYS
280
A
SG
CYS
165
1_555
106.5
A
CYS
259
A
SG
CYS
144
1_555
A
ZN
1409
P
ZN
ZN
1_555
A
CYS
280
A
SG
CYS
165
1_555
106.0
A
CYS
256
A
SG
CYS
141
1_555
A
ZN
1409
P
ZN
ZN
1_555
A
CYS
283
A
SG
CYS
168
1_555
96.9
A
CYS
259
A
SG
CYS
144
1_555
A
ZN
1409
P
ZN
ZN
1_555
A
CYS
283
A
SG
CYS
168
1_555
122.0
A
CYS
280
A
SG
CYS
165
1_555
A
ZN
1409
P
ZN
ZN
1_555
A
CYS
283
A
SG
CYS
168
1_555
120.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
245
A
N
VAL
130
A
O
LEU
225
A
O
LEU
110
A
N
LEU
223
A
N
LEU
108
A
O
VAL
140
A
O
VAL
25
A
N
VAL
141
A
N
VAL
26
A
O
LEU
314
A
O
LEU
199
A
N
ILE
317
A
N
ILE
202
A
O
LEU
341
A
O
LEU
226
A
N
LEU
342
A
N
LEU
227
A
O
VAL
360
A
O
VAL
245
A
N
PHE
263
A
N
PHE
148
A
O
ALA
254
A
O
ALA
139
A
N
THR
255
A
N
THR
140
A
O
LYS
288
A
O
LYS
173
A
N
GLU
325
A
N
GLU
210
B
O
VAL
1
B
O
VAL
6
1
A
GLY
116
A
GLY
1
1
Y
1
A
SER
117
A
SER
2
1
Y
1
A
SER
118
A
SER
3
1
Y
1
A
ASP
119
A
ASP
4
1
Y
1
A
LYS
120
A
LYS
5
1
Y
1
A
GLY
121
A
GLY
6
1
Y
1
A
ASP
395
A
ASP
280
1
Y
1
A
GLY
396
A
GLY
281
1
Y
1
A
PRO
397
A
PRO
282
1
Y
1
A
ASP
398
A
ASP
283
1
Y
1
A
LYS
399
A
LYS
284
1
Y
1
B
ARG
4
B
ARG
9
1
Y
1
B
LEU
5
B
LEU
10
1
Y
1
A
A
O
O
HOH
HOH
2026
2045
2.19
1
14.20
2.30
115.30
129.50
A
A
A
CA
CB
CG
LEU
LEU
LEU
216
216
216
N
1
A
ASP
156
-85.62
-155.52
1
A
LEU
168
-164.08
14.57
1
A
GLN
169
-37.32
131.82
1
A
PRO
201
-30.81
118.09
1
A
GLN
260
58.00
14.98
1
A
ASP
267
-61.75
0.25
1
A
THR
284
73.19
-3.08
1
A
PRO
289
-48.19
152.08
1
A
ASP
290
-76.94
48.09
1
A
HIS
354
-154.11
79.28
1
A
GLN
388
-30.79
-76.35
1
A
ARG
389
-52.88
-5.62
1
A
GLU
390
-107.50
-79.66
1
A
LYS
393
-77.20
35.13
42.366
-0.23
0.00
0.00
-0.14
0.00
0.37
0.950
0.916
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U VALUES REFINED INDIVIDUALLY
0.24831
0.18219
0.18560
2.50
38.18
646
12267
5.0
92.39
8.264
0.189
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.438
0.285
0.80
0.80
1.20
PDB ENTRY 3GLT
MAXIMUM LIKELIHOOD
MASK
2.50
38.18
56
2365
102
0
2207
0.015
0.020
2356
1.936
2.025
3188
6.484
5.000
279
35.028
22.551
98
17.410
15.000
368
18.704
15.000
21
0.115
0.200
364
0.009
0.022
1736
3.395
3.981
1122
5.349
5.954
1399
4.031
4.405
1233
0.332
0.215
2.565
48
911
20
94.20
2.50
38.20
4BVG
12915
-3.0
0.07
1
20.80
5.6
92.4
0.52
2.50
2.60
3.80
1
5.6
93.9
refinement
REFMAC
5.7.0032
data reduction
XDS
data scaling
XSCALE
phasing
PHASER
CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH NATIVE ALKYLIMIDATE FORMED FROM ACETYL-LYSINE ACS2-PEPTIDE CRYSTALLIZED IN PRESENCE OF THE INHIBITOR EX-527
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
3
N
N
3
N
N
5
N
N
5
N
N
3
N
N
6
N
N
7
N
N
8
N
N
9
N
N
A
SER
124
A
SER
9
HELX_P
A
ALA
134
A
ALA
19
1
1
11
A
ALA
146
A
ALA
31
HELX_P
A
GLY
153
A
GLY
38
5
2
8
A
TYR
175
A
TYR
60
HELX_P
A
PHE
180
A
PHE
65
5
3
6
A
GLU
181
A
GLU
66
HELX_P
A
ASN
188
A
ASN
73
1
4
8
A
PRO
189
A
PRO
74
HELX_P
A
LEU
199
A
LEU
84
1
5
11
A
ASN
207
A
ASN
92
HELX_P
A
LYS
219
A
LYS
104
1
6
13
A
GLY
232
A
GLY
117
HELX_P
A
SER
237
A
SER
122
1
7
6
A
PRO
240
A
PRO
125
HELX_P
A
SER
242
A
SER
127
5
8
3
A
ILE
268
A
ILE
153
HELX_P
A
ALA
274
A
ALA
159
1
9
7
A
PRO
299
A
PRO
184
HELX_P
A
LEU
303
A
LEU
188
5
10
5
A
LEU
304
A
LEU
189
HELX_P
A
ALA
312
A
ALA
197
1
11
9
A
PHE
327
A
PHE
212
HELX_P
A
VAL
334
A
VAL
219
5
12
8
A
GLY
349
A
GLY
234
HELX_P
A
HIS
354
A
HIS
239
1
13
6
A
ASP
365
A
ASP
250
HELX_P
A
LEU
377
A
LEU
262
1
14
13
A
TRP
379
A
TRP
264
HELX_P
A
GLY
392
A
GLY
277
1
15
14
covale
1.367
none
B
LYS
0
B
NZ
LYS
5
1_555
B
XYQ
1000
Q
CH
XYQ
1_555
metalc
2.429
A
CYS
256
A
SG
CYS
141
1_555
A
ZN
1409
P
ZN
ZN
1_555
metalc
2.141
A
CYS
259
A
SG
CYS
144
1_555
A
ZN
1409
P
ZN
ZN
1_555
metalc
2.234
A
CYS
280
A
SG
CYS
165
1_555
A
ZN
1409
P
ZN
ZN
1_555
metalc
2.259
A
CYS
283
A
SG
CYS
168
1_555
A
ZN
1409
P
ZN
ZN
1_555
HYDROLASE/LIGASE
HYDROLASE-LIGASE COMPLEX, NAD-DEPENDENT DEACETYLASE, NATIVE INTERMEDIATE
A
GLU
325
A
GLU
210
1
A
PRO
326
A
PRO
211
2.59
SIR3_HUMAN
UNP
1
Q9NTG7
ACS2L_HUMAN
UNP
2
Q9NUB1
116
399
4BVG
116
399
Q9NTG7
A
1
1
284
638
647
4BVG
-4
5
Q9NUB1
B
2
1
10
6
3
2
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
244
A
LEU
129
A
GLU
246
A
GLU
131
A
LEU
222
A
LEU
107
A
THR
227
A
THR
112
A
VAL
140
A
VAL
25
A
VAL
144
A
VAL
29
A
LEU
314
A
LEU
199
A
LEU
318
A
LEU
203
A
ARG
340
A
ARG
225
A
ASN
344
A
ASN
229
A
ASP
359
A
ASP
244
A
LEU
363
A
LEU
248
A
PRO
262
A
PRO
147
A
PRO
264
A
PRO
149
A
GLY
249
A
GLY
134
A
CYS
256
A
CYS
141
A
VAL
287
A
VAL
172
A
ILE
291
A
ILE
176
A
VAL
324
A
VAL
209
A
GLU
325
A
GLU
210
B
VAL
1
B
VAL
6
B
MET
2
B
MET
7
BINDING SITE FOR RESIDUE OAD B 1000
Software
26
BINDING SITE FOR RESIDUE EDO A 1396
A
EDO
1396
Software
5
BINDING SITE FOR RESIDUE EDO A 1397
A
EDO
1397
Software
5
BINDING SITE FOR RESIDUE EDO A 1398
A
EDO
1398
Software
2
BINDING SITE FOR RESIDUE EDO A 1399
A
EDO
1399
Software
7
BINDING SITE FOR RESIDUE GOL A 1400
A
GOL
1400
Software
4
BINDING SITE FOR RESIDUE GOL A 1401
A
GOL
1401
Software
9
BINDING SITE FOR RESIDUE GOL A 1402
A
GOL
1402
Software
3
BINDING SITE FOR RESIDUE EDO A 1403
A
EDO
1403
Software
4
BINDING SITE FOR RESIDUE EDO A 1404
A
EDO
1404
Software
5
BINDING SITE FOR RESIDUE SO4 A 1405
A
SO4
1405
Software
4
BINDING SITE FOR RESIDUE SO4 A 1406
A
SO4
1406
Software
3
BINDING SITE FOR RESIDUE EDO A 1407
A
EDO
1407
Software
4
BINDING SITE FOR RESIDUE PEG A 1408
A
PEG
1408
Software
6
BINDING SITE FOR RESIDUE ZN A 1409
A
ZN
1409
Software
4
A
GLY
145
A
GLY
30
26
1_555
A
ALA
146
A
ALA
31
26
1_555
A
GLY
147
A
GLY
32
26
1_555
A
THR
150
A
THR
35
26
1_555
A
ASP
156
A
ASP
41
26
1_555
A
PHE
157
A
PHE
42
26
1_555
A
ARG
158
A
ARG
43
26
1_555
A
TYR
165
A
TYR
50
26
1_555
A
PHE
180
A
PHE
65
26
1_555
A
GLN
228
A
GLN
113
26
1_555
A
HIS
248
A
HIS
133
26
1_555
A
VAL
292
A
VAL
177
26
1_555
A
GLY
319
A
GLY
204
26
1_555
A
THR
320
A
THR
205
26
1_555
A
SER
321
A
SER
206
26
1_555
A
VAL
324
A
VAL
209
26
1_555
A
ASN
344
A
ASN
229
26
1_555
A
ARG
345
A
ARG
230
26
1_555
A
ASP
346
A
ASP
231
26
1_555
A
GLY
364
A
GLY
249
26
1_555
A
ASP
365
A
ASP
250
26
1_555
A
VAL
366
A
VAL
251
26
1_555
A
PEG
1408
O
PEG
26
1_555
A
HOH
2007
R
HOH
26
1_555
A
HOH
2019
R
HOH
26
1_555
B
LYS
0
B
LYS
5
26
1_555
A
GLU
181
A
GLU
66
5
3_654
A
VAL
258
A
VAL
143
5
1_555
A
CYS
259
A
CYS
144
5
1_555
A
GLN
260
A
GLN
145
5
1_555
B
MET
2
B
MET
7
5
3_654
A
TYR
200
A
TYR
85
5
1_555
A
PRO
201
A
PRO
86
5
1_555
A
PHE
251
A
PHE
136
5
1_555
A
GLY
265
A
GLY
150
5
1_555
A
ARG
269
A
ARG
154
5
1_555
A
HIS
187
A
HIS
72
2
3_654
A
HIS
187
A
HIS
72
2
1_555
A
ASN
229
A
ASN
114
7
1_555
A
ILE
230
A
ILE
115
7
1_555
A
GLY
232
A
GLY
117
7
1_555
A
GLU
246
A
GLU
131
7
1_555
A
GLY
249
A
GLY
134
7
1_555
A
THR
250
A
THR
135
7
1_555
A
PHE
251
A
PHE
136
7
1_555
A
LYS
190
A
LYS
75
4
1_555
A
VAL
277
A
VAL
162
4
1_555
A
ARG
279
A
ARG
164
4
1_555
A
ARG
384
A
ARG
269
4
8_555
A
ALA
146
A
ALA
31
9
1_555
A
SER
149
A
SER
34
9
1_555
A
ILE
154
A
ILE
39
9
1_555
A
PHE
157
A
PHE
42
9
1_555
A
ASN
229
A
ASN
114
9
1_555
A
ILE
230
A
ILE
115
9
1_555
A
ASP
231
A
ASP
116
9
1_555
A
HOH
2019
R
HOH
9
1_555
A
HOH
2053
R
HOH
9
1_555
A
LYS
205
A
LYS
90
3
8_555
A
THR
391
A
THR
276
3
8_555
A
HOH
2054
R
HOH
3
1_555
A
SER
152
A
SER
37
4
1_555
A
ASN
203
A
ASN
88
4
1_555
A
TYR
204
A
TYR
89
4
1_555
A
LYS
205
A
LYS
90
4
1_555
A
GLN
138
A
GLN
23
5
1_555
A
GLY
220
A
GLY
105
5
1_555
A
LEU
221
A
LEU
106
5
1_555
A
LEU
222
A
LEU
107
5
1_555
A
LYS
243
A
LYS
128
5
1_555
A
ARG
276
A
ARG
161
4
8_455
A
GLY
364
A
GLY
249
4
1_555
A
ASP
365
A
ASP
250
4
1_555
A
HIS
368
A
HIS
253
4
1_555
A
ARG
224
A
ARG
109
3
1_555
A
SER
242
A
SER
127
3
1_555
A
ARG
301
A
ARG
186
3
1_555
A
CYS
283
A
CYS
168
4
8_455
A
ARG
384
A
ARG
269
4
1_555
A
GLN
388
A
GLN
273
4
1_555
A
HOH
2056
R
HOH
4
1_555
A
ARG
158
A
ARG
43
6
1_555
A
SER
159
A
SER
44
6
1_555
A
PRO
160
A
PRO
45
6
1_555
A
ARG
345
A
ARG
230
6
1_555
A
ASP
346
A
ASP
231
6
1_555
B
XYQ
1000
Q
XYQ
6
1_555
A
CYS
256
A
CYS
141
4
1_555
A
CYS
259
A
CYS
144
4
1_555
A
CYS
280
A
CYS
165
4
1_555
A
CYS
283
A
CYS
168
4
1_555
20
C 2 2 21