0.010330
0.005964
0.000000
0.000000
0.011928
0.000000
0.000000
0.000000
0.012501
0.00000
0.00000
0.00000
Casale, E.
Casuscelli, F.
Ardini, E.
Avanzi, N.
Cervi, G.
D'Anello, M.
Donati, D.
Faiardi, D.
Ferguson, R.D.
Fogliatto, G.
Galvani, A.
Marsiglio, A.
Mirizzi, D.G.
Montemartini, M.
Orrenius, C.
Papeo, G.
Piutti, C.
Salom, B.
Felder, E.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
96.802
96.802
79.995
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H8 N O6 P
185.072
n
PHOSPHOSERINE
PHOSPHONOSERINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C18 H23 N3 O2 S
345.459
N-(2,2-dimethylpropyl)-2-[1-oxo-7-(thiophen-3-yl)-1,2,3,4-tetrahydropyrrolo[1,2-a]pyrazin-4-yl]acetamide
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
P
N
298
N
O
N
299
N
O
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
O
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
R
C
N
328
N
O
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
N
Y
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
N
378
N
O
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
O
N
392
N
C
N
393
N
N
N
394
N
C
N
395
N
C
N
396
N
C
N
397
N
C
N
398
N
C
N
399
N
C
N
400
S
C
Y
401
N
N
Y
402
N
C
N
403
N
C
N
404
N
N
N
405
N
C
N
406
N
O
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
S
Y
413
N
C
Y
414
N
C
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
N
441
N
O
N
442
N
C
N
443
N
C
N
444
N
C
N
445
N
O
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
Y
335
N
doub
Y
336
N
sing
Y
337
N
sing
N
338
N
sing
Y
339
N
doub
Y
340
N
sing
Y
341
N
sing
N
342
N
sing
Y
343
N
sing
Y
344
N
doub
N
345
N
sing
Y
346
N
doub
N
347
N
sing
Y
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
Y
387
N
sing
Y
388
N
sing
Y
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
Y
394
N
doub
Y
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
Y
400
N
sing
Y
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
UK
Bioorg.Med.Chem.
BMECEP
1200
0968-0896
21
7364
10.1016/J.BMC.2013.09.054
24139169
Discovery and Optimization of Pyrrolo[1,2-A]Pyrazinones Leads to Novel and Selective Inhibitors of Pim Kinases.
2013
10.2210/pdb4bzn/pdb
pdb_00004bzn
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2008-04-29
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.97
1.0
ID14-4
ESRF
0.97
SYNCHROTRON
ESRF BEAMLINE ID14-4
35835.691
SERINE/THREONINE-PROTEIN KINASE PIM-1
2.7.11.1
KINASE DOMAIN, RESIDUES 2-313
1
man
polymer
345.459
N-(2,2-dimethylpropyl)-2-[1-oxo-7-(thiophen-3-yl)-1,2,3,4-tetrahydropyrrolo[1,2-a]pyrazin-4-yl]acetamide
1
syn
non-polymer
18.015
water
170
nat
water
PROTO-ONCOGENE SERINE THREONINE-PROTEIN KINASE PIM-1
no
yes
GPLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGE
LPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH
NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGD
IPFEHDEEIIRGQVFFRQRVS(SEP)ECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
GPLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGE
LPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH
NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGD
IPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
562
ESCHERICHIA COLI
PGEX2T
PLASMID
1
3.19
61.15
NONE
20% PEG 3350K, 0.3 M NACL, 0.1 M TRISHCL PH 7.6
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2013-10-30
1
1
2013-11-13
1
2
2023-12-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF PIM1 IN COMPLEX WITH A PYRROLO- PYRAZINONE INHIBITOR
PDBE
Y
PDBE
2013-07-29
REL
REL
UGX
N-(2,2-dimethylpropyl)-2-[1-oxo-7-(thiophen-3-yl)-1,2,3,4-tetrahydropyrrolo[1,2-a]pyrazin-4-yl]acetamide
HOH
water
THE FIRST TWO RESIDUES AT THE N-TERMINAL GLY AND PRO ARE
EXPRESSION TAG
1YXT
PDB ENTRY 1YXT
PDB
experimental model
UGX
1306
2
UGX
UGX
1306
A
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
HOH
2068
3
HOH
HOH
2068
A
HOH
2069
3
HOH
HOH
2069
A
HOH
2070
3
HOH
HOH
2070
A
HOH
2071
3
HOH
HOH
2071
A
HOH
2072
3
HOH
HOH
2072
A
HOH
2073
3
HOH
HOH
2073
A
HOH
2074
3
HOH
HOH
2074
A
HOH
2075
3
HOH
HOH
2075
A
HOH
2076
3
HOH
HOH
2076
A
HOH
2077
3
HOH
HOH
2077
A
HOH
2078
3
HOH
HOH
2078
A
HOH
2079
3
HOH
HOH
2079
A
HOH
2080
3
HOH
HOH
2080
A
HOH
2081
3
HOH
HOH
2081
A
HOH
2082
3
HOH
HOH
2082
A
HOH
2083
3
HOH
HOH
2083
A
HOH
2084
3
HOH
HOH
2084
A
HOH
2085
3
HOH
HOH
2085
A
HOH
2086
3
HOH
HOH
2086
A
HOH
2087
3
HOH
HOH
2087
A
HOH
2088
3
HOH
HOH
2088
A
HOH
2089
3
HOH
HOH
2089
A
HOH
2090
3
HOH
HOH
2090
A
HOH
2091
3
HOH
HOH
2091
A
HOH
2092
3
HOH
HOH
2092
A
HOH
2093
3
HOH
HOH
2093
A
HOH
2094
3
HOH
HOH
2094
A
HOH
2095
3
HOH
HOH
2095
A
HOH
2096
3
HOH
HOH
2096
A
HOH
2097
3
HOH
HOH
2097
A
HOH
2098
3
HOH
HOH
2098
A
HOH
2099
3
HOH
HOH
2099
A
HOH
2100
3
HOH
HOH
2100
A
HOH
2101
3
HOH
HOH
2101
A
HOH
2102
3
HOH
HOH
2102
A
HOH
2103
3
HOH
HOH
2103
A
HOH
2104
3
HOH
HOH
2104
A
HOH
2105
3
HOH
HOH
2105
A
HOH
2106
3
HOH
HOH
2106
A
HOH
2107
3
HOH
HOH
2107
A
HOH
2108
3
HOH
HOH
2108
A
HOH
2109
3
HOH
HOH
2109
A
HOH
2110
3
HOH
HOH
2110
A
HOH
2111
3
HOH
HOH
2111
A
HOH
2112
3
HOH
HOH
2112
A
HOH
2113
3
HOH
HOH
2113
A
HOH
2114
3
HOH
HOH
2114
A
HOH
2115
3
HOH
HOH
2115
A
HOH
2116
3
HOH
HOH
2116
A
HOH
2117
3
HOH
HOH
2117
A
HOH
2118
3
HOH
HOH
2118
A
HOH
2119
3
HOH
HOH
2119
A
HOH
2120
3
HOH
HOH
2120
A
HOH
2121
3
HOH
HOH
2121
A
HOH
2122
3
HOH
HOH
2122
A
HOH
2123
3
HOH
HOH
2123
A
HOH
2124
3
HOH
HOH
2124
A
HOH
2125
3
HOH
HOH
2125
A
HOH
2126
3
HOH
HOH
2126
A
HOH
2127
3
HOH
HOH
2127
A
HOH
2128
3
HOH
HOH
2128
A
HOH
2129
3
HOH
HOH
2129
A
HOH
2130
3
HOH
HOH
2130
A
HOH
2131
3
HOH
HOH
2131
A
HOH
2132
3
HOH
HOH
2132
A
HOH
2133
3
HOH
HOH
2133
A
HOH
2134
3
HOH
HOH
2134
A
HOH
2135
3
HOH
HOH
2135
A
HOH
2136
3
HOH
HOH
2136
A
HOH
2137
3
HOH
HOH
2137
A
HOH
2138
3
HOH
HOH
2138
A
HOH
2139
3
HOH
HOH
2139
A
HOH
2140
3
HOH
HOH
2140
A
HOH
2141
3
HOH
HOH
2141
A
HOH
2142
3
HOH
HOH
2142
A
HOH
2143
3
HOH
HOH
2143
A
HOH
2144
3
HOH
HOH
2144
A
HOH
2145
3
HOH
HOH
2145
A
HOH
2146
3
HOH
HOH
2146
A
HOH
2147
3
HOH
HOH
2147
A
HOH
2148
3
HOH
HOH
2148
A
HOH
2149
3
HOH
HOH
2149
A
HOH
2150
3
HOH
HOH
2150
A
HOH
2151
3
HOH
HOH
2151
A
HOH
2152
3
HOH
HOH
2152
A
HOH
2153
3
HOH
HOH
2153
A
HOH
2154
3
HOH
HOH
2154
A
HOH
2155
3
HOH
HOH
2155
A
HOH
2156
3
HOH
HOH
2156
A
HOH
2157
3
HOH
HOH
2157
A
HOH
2158
3
HOH
HOH
2158
A
HOH
2159
3
HOH
HOH
2159
A
HOH
2160
3
HOH
HOH
2160
A
HOH
2161
3
HOH
HOH
2161
A
HOH
2162
3
HOH
HOH
2162
A
HOH
2163
3
HOH
HOH
2163
A
HOH
2164
3
HOH
HOH
2164
A
HOH
2165
3
HOH
HOH
2165
A
HOH
2166
3
HOH
HOH
2166
A
HOH
2167
3
HOH
HOH
2167
A
HOH
2168
3
HOH
HOH
2168
A
HOH
2169
3
HOH
HOH
2169
A
HOH
2170
3
HOH
HOH
2170
A
n
1
0
A
n
2
1
A
n
3
2
A
n
4
3
A
n
5
4
A
n
6
5
A
n
7
6
A
n
8
7
A
n
9
8
A
n
10
9
A
n
11
10
A
n
12
11
A
n
13
12
A
n
14
13
A
n
15
14
A
n
16
15
A
n
17
16
A
n
18
17
A
n
19
18
A
n
20
19
A
n
21
20
A
n
22
21
A
n
23
22
A
n
24
23
A
n
25
24
A
n
26
25
A
n
27
26
A
n
28
27
A
n
29
28
A
n
30
29
A
n
31
30
A
n
32
31
A
n
33
32
A
PRO
33
n
34
PRO
33
A
LEU
34
n
35
LEU
34
A
GLU
35
n
36
GLU
35
A
SER
36
n
37
SER
36
A
GLN
37
n
38
GLN
37
A
TYR
38
n
39
TYR
38
A
GLN
39
n
40
GLN
39
A
VAL
40
n
41
VAL
40
A
GLY
41
n
42
GLY
41
A
PRO
42
n
43
PRO
42
A
LEU
43
n
44
LEU
43
A
LEU
44
n
45
LEU
44
A
GLY
45
n
46
GLY
45
A
SER
46
n
47
SER
46
A
GLY
47
n
48
GLY
47
A
GLY
48
n
49
GLY
48
A
PHE
49
n
50
PHE
49
A
GLY
50
n
51
GLY
50
A
SER
51
n
52
SER
51
A
VAL
52
n
53
VAL
52
A
TYR
53
n
54
TYR
53
A
SER
54
n
55
SER
54
A
GLY
55
n
56
GLY
55
A
ILE
56
n
57
ILE
56
A
ARG
57
n
58
ARG
57
A
VAL
58
n
59
VAL
58
A
SER
59
n
60
SER
59
A
ASP
60
n
61
ASP
60
A
ASN
61
n
62
ASN
61
A
LEU
62
n
63
LEU
62
A
PRO
63
n
64
PRO
63
A
VAL
64
n
65
VAL
64
A
ALA
65
n
66
ALA
65
A
ILE
66
n
67
ILE
66
A
LYS
67
n
68
LYS
67
A
HIS
68
n
69
HIS
68
A
VAL
69
n
70
VAL
69
A
GLU
70
n
71
GLU
70
A
LYS
71
n
72
LYS
71
A
ASP
72
n
73
ASP
72
A
ARG
73
n
74
ARG
73
A
ILE
74
n
75
ILE
74
A
SER
75
n
76
SER
75
A
ASP
76
n
77
ASP
76
A
TRP
77
n
78
TRP
77
A
GLY
78
n
79
GLY
78
A
GLU
79
n
80
GLU
79
A
LEU
80
n
81
LEU
80
A
PRO
81
n
82
PRO
81
A
ASN
82
n
83
ASN
82
A
GLY
83
n
84
GLY
83
A
THR
84
n
85
THR
84
A
ARG
85
n
86
ARG
85
A
VAL
86
n
87
VAL
86
A
PRO
87
n
88
PRO
87
A
MET
88
n
89
MET
88
A
GLU
89
n
90
GLU
89
A
VAL
90
n
91
VAL
90
A
VAL
91
n
92
VAL
91
A
LEU
92
n
93
LEU
92
A
LEU
93
n
94
LEU
93
A
LYS
94
n
95
LYS
94
A
LYS
95
n
96
LYS
95
A
VAL
96
n
97
VAL
96
A
SER
97
n
98
SER
97
A
SER
98
n
99
SER
98
A
GLY
99
n
100
GLY
99
A
PHE
100
n
101
PHE
100
A
SER
101
n
102
SER
101
A
GLY
102
n
103
GLY
102
A
VAL
103
n
104
VAL
103
A
ILE
104
n
105
ILE
104
A
ARG
105
n
106
ARG
105
A
LEU
106
n
107
LEU
106
A
LEU
107
n
108
LEU
107
A
ASP
108
n
109
ASP
108
A
TRP
109
n
110
TRP
109
A
PHE
110
n
111
PHE
110
A
GLU
111
n
112
GLU
111
A
ARG
112
n
113
ARG
112
A
PRO
113
n
114
PRO
113
A
ASP
114
n
115
ASP
114
A
SER
115
n
116
SER
115
A
PHE
116
n
117
PHE
116
A
VAL
117
n
118
VAL
117
A
LEU
118
n
119
LEU
118
A
ILE
119
n
120
ILE
119
A
LEU
120
n
121
LEU
120
A
GLU
121
n
122
GLU
121
A
ARG
122
n
123
ARG
122
A
PRO
123
n
124
PRO
123
A
GLU
124
n
125
GLU
124
A
PRO
125
n
126
PRO
125
A
VAL
126
n
127
VAL
126
A
GLN
127
n
128
GLN
127
A
ASP
128
n
129
ASP
128
A
LEU
129
n
130
LEU
129
A
PHE
130
n
131
PHE
130
A
ASP
131
n
132
ASP
131
A
PHE
132
n
133
PHE
132
A
ILE
133
n
134
ILE
133
A
THR
134
n
135
THR
134
A
GLU
135
n
136
GLU
135
A
ARG
136
n
137
ARG
136
A
GLY
137
n
138
GLY
137
A
ALA
138
n
139
ALA
138
A
LEU
139
n
140
LEU
139
A
GLN
140
n
141
GLN
140
A
GLU
141
n
142
GLU
141
A
GLU
142
n
143
GLU
142
A
LEU
143
n
144
LEU
143
A
ALA
144
n
145
ALA
144
A
ARG
145
n
146
ARG
145
A
SER
146
n
147
SER
146
A
PHE
147
n
148
PHE
147
A
PHE
148
n
149
PHE
148
A
TRP
149
n
150
TRP
149
A
GLN
150
n
151
GLN
150
A
VAL
151
n
152
VAL
151
A
LEU
152
n
153
LEU
152
A
GLU
153
n
154
GLU
153
A
ALA
154
n
155
ALA
154
A
VAL
155
n
156
VAL
155
A
ARG
156
n
157
ARG
156
A
HIS
157
n
158
HIS
157
A
CYS
158
n
159
CYS
158
A
HIS
159
n
160
HIS
159
A
ASN
160
n
161
ASN
160
A
CYS
161
n
162
CYS
161
A
GLY
162
n
163
GLY
162
A
VAL
163
n
164
VAL
163
A
LEU
164
n
165
LEU
164
A
HIS
165
n
166
HIS
165
A
ARG
166
n
167
ARG
166
A
ASP
167
n
168
ASP
167
A
ILE
168
n
169
ILE
168
A
LYS
169
n
170
LYS
169
A
ASP
170
n
171
ASP
170
A
GLU
171
n
172
GLU
171
A
ASN
172
n
173
ASN
172
A
ILE
173
n
174
ILE
173
A
LEU
174
n
175
LEU
174
A
ILE
175
n
176
ILE
175
A
ASP
176
n
177
ASP
176
A
LEU
177
n
178
LEU
177
A
ASN
178
n
179
ASN
178
A
ARG
179
n
180
ARG
179
A
GLY
180
n
181
GLY
180
A
GLU
181
n
182
GLU
181
A
LEU
182
n
183
LEU
182
A
LYS
183
n
184
LYS
183
A
LEU
184
n
185
LEU
184
A
ILE
185
n
186
ILE
185
A
ASP
186
n
187
ASP
186
A
PHE
187
n
188
PHE
187
A
GLY
188
n
189
GLY
188
A
SER
189
n
190
SER
189
A
GLY
190
n
191
GLY
190
A
ALA
191
n
192
ALA
191
A
LEU
192
n
193
LEU
192
A
LEU
193
n
194
LEU
193
A
LYS
194
n
195
LYS
194
A
ASP
195
n
196
ASP
195
A
THR
196
n
197
THR
196
A
VAL
197
n
198
VAL
197
A
TYR
198
n
199
TYR
198
A
THR
199
n
200
THR
199
A
ASP
200
n
201
ASP
200
A
PHE
201
n
202
PHE
201
A
ASP
202
n
203
ASP
202
A
GLY
203
n
204
GLY
203
A
THR
204
n
205
THR
204
A
ARG
205
n
206
ARG
205
A
VAL
206
n
207
VAL
206
A
TYR
207
n
208
TYR
207
A
SER
208
n
209
SER
208
A
PRO
209
n
210
PRO
209
A
PRO
210
n
211
PRO
210
A
GLU
211
n
212
GLU
211
A
TRP
212
n
213
TRP
212
A
ILE
213
n
214
ILE
213
A
ARG
214
n
215
ARG
214
A
TYR
215
n
216
TYR
215
A
HIS
216
n
217
HIS
216
A
ARG
217
n
218
ARG
217
A
TYR
218
n
219
TYR
218
A
HIS
219
n
220
HIS
219
A
GLY
220
n
221
GLY
220
A
ARG
221
n
222
ARG
221
A
SER
222
n
223
SER
222
A
ALA
223
n
224
ALA
223
A
ALA
224
n
225
ALA
224
A
VAL
225
n
226
VAL
225
A
TRP
226
n
227
TRP
226
A
SER
227
n
228
SER
227
A
LEU
228
n
229
LEU
228
A
GLY
229
n
230
GLY
229
A
ILE
230
n
231
ILE
230
A
LEU
231
n
232
LEU
231
A
LEU
232
n
233
LEU
232
A
TYR
233
n
234
TYR
233
A
ASP
234
n
235
ASP
234
A
MET
235
n
236
MET
235
A
VAL
236
n
237
VAL
236
A
CYS
237
n
238
CYS
237
A
GLY
238
n
239
GLY
238
A
ASP
239
n
240
ASP
239
A
ILE
240
n
241
ILE
240
A
PRO
241
n
242
PRO
241
A
PHE
242
n
243
PHE
242
A
GLU
243
n
244
GLU
243
A
HIS
244
n
245
HIS
244
A
ASP
245
n
246
ASP
245
A
GLU
246
n
247
GLU
246
A
GLU
247
n
248
GLU
247
A
ILE
248
n
249
ILE
248
A
ILE
249
n
250
ILE
249
A
ARG
250
n
251
ARG
250
A
GLY
251
n
252
GLY
251
A
GLN
252
n
253
GLN
252
A
VAL
253
n
254
VAL
253
A
PHE
254
n
255
PHE
254
A
PHE
255
n
256
PHE
255
A
ARG
256
n
257
ARG
256
A
GLN
257
n
258
GLN
257
A
ARG
258
n
259
ARG
258
A
VAL
259
n
260
VAL
259
A
SER
260
n
261
SER
260
A
SEP
261
n
262
SEP
261
A
GLU
262
n
263
GLU
262
A
CYS
263
n
264
CYS
263
A
GLN
264
n
265
GLN
264
A
HIS
265
n
266
HIS
265
A
LEU
266
n
267
LEU
266
A
ILE
267
n
268
ILE
267
A
ARG
268
n
269
ARG
268
A
TRP
269
n
270
TRP
269
A
CYS
270
n
271
CYS
270
A
LEU
271
n
272
LEU
271
A
ALA
272
n
273
ALA
272
A
LEU
273
n
274
LEU
273
A
ARG
274
n
275
ARG
274
A
PRO
275
n
276
PRO
275
A
SER
276
n
277
SER
276
A
ASP
277
n
278
ASP
277
A
ARG
278
n
279
ARG
278
A
PRO
279
n
280
PRO
279
A
THR
280
n
281
THR
280
A
PHE
281
n
282
PHE
281
A
GLU
282
n
283
GLU
282
A
GLU
283
n
284
GLU
283
A
ILE
284
n
285
ILE
284
A
GLN
285
n
286
GLN
285
A
ASN
286
n
287
ASN
286
A
HIS
287
n
288
HIS
287
A
PRO
288
n
289
PRO
288
A
TRP
289
n
290
TRP
289
A
MET
290
n
291
MET
290
A
GLN
291
n
292
GLN
291
A
ASP
292
n
293
ASP
292
A
VAL
293
n
294
VAL
293
A
LEU
294
n
295
LEU
294
A
LEU
295
n
296
LEU
295
A
PRO
296
n
297
PRO
296
A
GLN
297
n
298
GLN
297
A
GLU
298
n
299
GLU
298
A
THR
299
n
300
THR
299
A
ALA
300
n
301
ALA
300
A
GLU
301
n
302
GLU
301
A
ILE
302
n
303
ILE
302
A
HIS
303
n
304
HIS
303
A
LEU
304
n
305
LEU
304
A
HIS
305
n
306
HIS
305
A
n
307
306
A
n
308
307
A
n
309
308
A
n
310
309
A
n
311
310
A
n
312
311
A
n
313
312
A
n
314
313
A
software_defined_assembly
PISA
1
monomeric
A
SEP
261
PHOSPHOSERINE
A
SEP
262
SER
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
47
A
N
GLY
48
A
O
GLY
50
A
O
GLY
51
A
N
GLY
55
A
N
GLY
56
A
O
VAL
64
A
O
VAL
65
A
N
VAL
69
A
N
VAL
70
A
O
PHE
116
A
O
PHE
117
A
O
ILE
119
A
O
ILE
120
A
N
LEU
107
A
N
LEU
108
A
N
GLY
78
A
N
GLY
79
A
O
VAL
86
A
O
VAL
87
A
N
GLN
127
A
N
GLN
128
A
O
ILE
175
A
O
ILE
176
A
N
ASP
176
A
N
ASP
177
A
O
GLU
181
A
O
GLU
182
A
N
LEU
164
A
N
LEU
165
A
O
ALA
191
A
O
ALA
192
1
A
GLY
0
A
GLY
1
1
Y
1
A
PRO
1
A
PRO
2
1
Y
1
A
LEU
2
A
LEU
3
1
Y
1
A
LEU
3
A
LEU
4
1
Y
1
A
SER
4
A
SER
5
1
Y
1
A
LYS
5
A
LYS
6
1
Y
1
A
ILE
6
A
ILE
7
1
Y
1
A
ASN
7
A
ASN
8
1
Y
1
A
SER
8
A
SER
9
1
Y
1
A
LEU
9
A
LEU
10
1
Y
1
A
ALA
10
A
ALA
11
1
Y
1
A
HIS
11
A
HIS
12
1
Y
1
A
LEU
12
A
LEU
13
1
Y
1
A
ARG
13
A
ARG
14
1
Y
1
A
ALA
14
A
ALA
15
1
Y
1
A
ALA
15
A
ALA
16
1
Y
1
A
PRO
16
A
PRO
17
1
Y
1
A
CYS
17
A
CYS
18
1
Y
1
A
ASN
18
A
ASN
19
1
Y
1
A
ASP
19
A
ASP
20
1
Y
1
A
LEU
20
A
LEU
21
1
Y
1
A
HIS
21
A
HIS
22
1
Y
1
A
ALA
22
A
ALA
23
1
Y
1
A
THR
23
A
THR
24
1
Y
1
A
LYS
24
A
LYS
25
1
Y
1
A
LEU
25
A
LEU
26
1
Y
1
A
ALA
26
A
ALA
27
1
Y
1
A
PRO
27
A
PRO
28
1
Y
1
A
GLY
28
A
GLY
29
1
Y
1
A
LYS
29
A
LYS
30
1
Y
1
A
GLU
30
A
GLU
31
1
Y
1
A
LYS
31
A
LYS
32
1
Y
1
A
GLU
32
A
GLU
33
1
Y
1
A
SER
306
A
SER
307
1
Y
1
A
LEU
307
A
LEU
308
1
Y
1
A
SER
308
A
SER
309
1
Y
1
A
PRO
309
A
PRO
310
1
Y
1
A
GLY
310
A
GLY
311
1
Y
1
A
PRO
311
A
PRO
312
1
Y
1
A
SER
312
A
SER
313
1
Y
1
A
LYS
313
A
LYS
314
1
Y
1
A
SER
75
-63.40
-72.58
1
A
ASP
167
-148.12
43.27
1
A
ASP
186
64.99
88.00
1
A
ASP
202
-140.83
29.38
35.881
0.20
0.10
0.00
0.20
0.00
-0.30
0.966
0.958
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.19879
0.17656
0.17766
1.90
30.00
1699
31804
5.1
99.70
2.341
0.070
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.113
0.106
0.80
0.80
1.20
PDB ENTRY 1YXT
MAXIMUM LIKELIHOOD
MASK
1.90
30.00
170
2422
24
0
2228
0.008
0.019
2314
1.341
1.964
3145
5.095
5.000
272
34.432
23.136
118
12.456
15.000
379
18.704
15.000
21
0.081
0.200
333
0.005
0.021
1794
0.279
0.253
1.949
110
2276
20
99.71
1.90
30.00
4BZN
33517
0.0
0.06
1
12.30
3.6
99.7
0.47
1.90
1.97
2.70
1
99.6
refinement
REFMAC
5.6.0117
data reduction
DENZO
data scaling
SCALEPACK
phasing
MOLREP
Crystal structure of PIM1 in complex with a Pyrrolo(1,2-a)Pyrazinone inhibitor
1
N
N
2
N
N
3
N
N
A
PRO
33
A
PRO
34
HELX_P
A
GLN
37
A
GLN
38
1
1
5
A
ASP
72
A
ASP
73
HELX_P
A
ILE
74
A
ILE
75
5
2
3
A
MET
88
A
MET
89
HELX_P
A
VAL
96
A
VAL
97
1
3
9
A
LEU
129
A
LEU
130
HELX_P
A
GLY
137
A
GLY
138
1
4
9
A
GLN
140
A
GLN
141
HELX_P
A
CYS
161
A
CYS
162
1
5
22
A
LYS
169
A
LYS
170
HELX_P
A
GLU
171
A
GLU
172
5
6
3
A
THR
204
A
THR
205
HELX_P
A
SER
208
A
SER
209
5
7
5
A
PRO
209
A
PRO
210
HELX_P
A
HIS
216
A
HIS
217
1
8
8
A
HIS
219
A
HIS
220
HELX_P
A
GLY
238
A
GLY
239
1
9
20
A
HIS
244
A
HIS
245
HELX_P
A
GLY
251
A
GLY
252
1
10
8
A
SER
260
A
SER
261
HELX_P
A
LEU
271
A
LEU
272
1
11
12
A
ARG
274
A
ARG
275
HELX_P
A
ARG
278
A
ARG
279
5
12
5
A
THR
280
A
THR
281
HELX_P
A
ASN
286
A
ASN
287
1
13
7
A
HIS
287
A
HIS
288
HELX_P
A
GLN
291
A
GLN
292
5
14
5
A
LEU
295
A
LEU
296
HELX_P
A
LEU
304
A
LEU
305
1
15
10
covale
1.331
both
A
SER
260
A
C
SER
261
1_555
A
SEP
261
A
N
SEP
262
1_555
covale
1.335
both
A
SEP
261
A
C
SEP
262
1_555
A
GLU
262
A
N
GLU
263
1_555
TRANSFERASE
PIM1, ATP BINDING, KINASE INHIBITOR, TRANSFERASE
A
GLU
124
A
GLU
125
1
A
PRO
125
A
PRO
126
-1.41
PIM1_HUMAN
UNP
1
P11309
2
313
4BZN
2
313
P11309
A
1
3
314
1
expression tag
GLY
0
4BZN
A
P11309
UNP
1
1
expression tag
PRO
1
4BZN
A
P11309
UNP
2
5
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
38
A
TYR
39
A
GLY
47
A
GLY
48
A
GLY
50
A
GLY
51
A
ARG
57
A
ARG
58
A
PRO
63
A
PRO
64
A
GLU
70
A
GLU
71
A
SER
115
A
SER
116
A
GLU
121
A
GLU
122
A
LEU
106
A
LEU
107
A
GLU
111
A
GLU
112
A
TRP
77
A
TRP
78
A
GLU
79
A
GLU
80
A
ARG
85
A
ARG
86
A
PRO
87
A
PRO
88
A
VAL
126
A
VAL
127
A
ASP
128
A
ASP
129
A
ILE
173
A
ILE
174
A
ASP
176
A
ASP
177
A
GLU
181
A
GLU
182
A
LEU
184
A
LEU
185
A
VAL
163
A
VAL
164
A
LEU
164
A
LEU
165
A
ALA
191
A
ALA
192
A
LEU
192
A
LEU
193
BINDING SITE FOR RESIDUE UGX A 1306
A
UGX
1306
Software
12
A
LEU
44
A
LEU
45
12
1_555
A
GLY
45
A
GLY
46
12
1_555
A
PHE
49
A
PHE
50
12
1_555
A
ALA
65
A
ALA
66
12
1_555
A
LYS
67
A
LYS
68
12
1_555
A
LEU
120
A
LEU
121
12
1_555
A
GLU
121
A
GLU
122
12
1_555
A
ASP
128
A
ASP
129
12
1_555
A
LEU
174
A
LEU
175
12
1_555
A
ILE
185
A
ILE
186
12
1_555
A
ASP
186
A
ASP
187
12
1_555
A
HOH
2049
C
HOH
12
1_555
170
P 65