1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Serobian, A.
Thomas, D.S.
Ball, G.E.
Denny, W.A.
Wakelin, L.P.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C34 H38 N8 O2 4
590.718
1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
Y
144
N
C
Y
145
N
C
Y
146
N
C
Y
147
N
C
Y
148
N
C
Y
149
N
C
Y
150
N
N
Y
151
N
N
Y
152
N
C
Y
153
N
C
Y
154
N
C
Y
155
N
C
Y
156
N
C
Y
157
N
C
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
N
N
162
N
C
N
163
N
C
N
164
N
N
N
165
N
C
N
166
N
N
N
167
N
C
N
168
N
O
Y
169
N
C
Y
170
N
C
Y
171
N
C
Y
172
N
C
Y
173
N
C
Y
174
N
N
Y
175
N
C
Y
176
N
C
Y
177
N
N
Y
178
N
C
Y
179
N
C
Y
180
N
C
Y
181
N
C
Y
182
N
C
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
N
N
187
N
C
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
Y
150
N
doub
Y
151
N
sing
N
152
N
sing
Y
153
N
sing
N
154
N
sing
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
Y
160
N
doub
Y
161
N
doub
Y
162
N
sing
Y
163
N
sing
N
164
N
sing
Y
165
N
doub
Y
166
N
sing
Y
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
Y
199
N
doub
Y
200
N
sing
Y
201
N
sing
N
202
N
sing
Y
203
N
doub
N
204
N
sing
Y
205
N
sing
N
206
N
sing
Y
207
N
doub
Y
208
N
sing
Y
209
N
sing
Y
210
N
doub
Y
211
N
sing
Y
212
N
sing
Y
213
N
sing
Y
214
N
doub
N
215
N
sing
Y
216
N
doub
N
217
N
sing
Y
218
N
sing
N
219
N
sing
Y
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
US
Biopolymers
BIPMAA
0161
0006-3525
101
1099
10.1002/BIP.22513
24898663
The Solution Structure of Bis(Phenazine-1-Carboxamide)-DNA Complexes: Mln 944 Binding Corrected and Extended.
2014
10.2210/pdb4bzt/pdb
pdb_00004bzt
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
THE DNA CONFORMATION IS IN THE FORM OF B-DNA.
1808.229
DNA
2
syn
polymer
590.718
1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM
1
syn
non-polymer
no
no
(DA)(DT)(DG)(DC)(DA)(DT)
ATGCAT
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
-5.135
1
20
A
1
B
12
0.251
A_DA1:DT12_B
1
-12.947
0.132
0.069
0.017
-0.581
1
20
A
2
B
11
-1.758
A_DT2:DA11_B
2
-11.392
-0.056
0.143
-0.028
5.788
1
19
A
3
B
10
0.616
A_DG3:DC10_B
3
-6.371
-0.421
0.388
-0.098
-5.088
1
19
A
4
B
9
0.880
A_DC4:DG9_B
4
-8.058
0.489
0.401
-0.151
-6.274
1
20
A
5
B
8
-0.121
A_DA5:DT8_B
5
-21.292
0.182
0.440
-0.043
-14.831
1
20
A
6
B
7
-3.903
A_DT6:DA7_B
6
-20.871
-0.353
0.541
0.027
3.183
28.263
A
A
1
2
2.330
B
B
12
11
3.235
1.137
-0.882
-1.568
AA_DA1DT2:DA11DT12_BB
1
-0.418
0.856
28.237
-3.470
1.711
5.899
19.138
A
A
2
3
-23.306
B
B
11
10
6.497
-7.539
0.404
0.133
AA_DT2DG3:DC10DA11_BB
2
-0.966
2.986
17.577
7.992
-2.187
3.382
41.341
A
A
3
4
-7.344
B
B
10
9
3.577
-5.172
0.058
1.414
AA_DG3DC4:DG9DC10_BB
3
0.127
-0.180
41.030
2.595
-0.067
4.493
11.668
A
A
4
5
-39.731
B
B
9
8
6.826
-7.423
0.285
1.042
AA_DC4DA5:DT8DG9_BB
4
-1.580
8.456
8.870
25.199
-5.672
3.683
33.428
A
A
5
6
-7.988
B
B
8
7
3.467
-4.581
-0.534
-1.766
AA_DA5DT6:DA7DT8_BB
5
-0.823
1.436
33.112
-2.239
0.779
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
struct_site
repository
Initial release
Structure summary
Database references
Data collection
Database references
Derived calculations
Other
1
0
2013-08-21
1
1
2013-09-04
1
2
2014-09-03
1
3
2024-05-15
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_cs
_pdbx_database_status.status_code_mr
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
SOLUTION STRUCTURE OF THE MLN 944-D(TATGCATA)2 COMPLEX
THE SOLUTION STRUCTURE OF THE MLN 944-D(TACGCGTA)2 COMPLEX
PDBE
Y
PDBE
2013-07-30
REL
REL
REL
XR2
1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM
EUROGENTEC
32630
SYNTHETIC CONSTRUCT
sample
NONE
DISTANCE RESTRAINTS
1
1
NOESY
COSY
TOCSY
31P HSQC
15N HSQC
80
mM
5.0
pH
1.0
atm
288.0
K
AMBER
10% WATER/90% D2O
D.A.CASE,ET.AL.
refinement
Amber
structure solution
TopSpin
3.1
700
Bruker
AVANCE
XR2
13
2
XR2
XR2
13
A
DA
1
n
1
DA
1
A
DT
2
n
2
DT
2
A
DG
3
n
3
DG
3
A
DC
4
n
4
DC
4
A
DA
5
n
5
DA
5
A
DT
6
n
6
DT
6
A
DA
7
n
1
DA
7
B
DT
8
n
2
DT
8
B
DG
9
n
3
DG
9
B
DC
10
n
4
DC
10
B
DA
11
n
5
DA
11
B
DT
12
n
6
DT
12
B
author_and_software_defined_assembly
PQS
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DA
5
0.075
SIDE CHAIN
1
B
DT
8
0.074
SIDE CHAIN
1
1.94
0.30
108.30
110.24
A
A
A
O4'
C1'
N9
DA
DA
DA
1
1
1
N
1
-3.70
0.50
117.00
113.30
A
A
A
C4
C5
C6
DA
DA
DA
1
1
1
N
1
3.65
0.50
117.70
121.35
A
A
A
C5
C6
N1
DA
DA
DA
1
1
1
N
1
-5.19
0.60
118.60
113.41
A
A
A
N1
C6
N6
DA
DA
DA
1
1
1
N
1
2.43
0.30
108.30
110.73
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
1.81
0.30
108.30
110.11
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
1
2.22
0.30
108.30
110.52
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
-3.63
0.50
117.00
113.37
A
A
A
C4
C5
C6
DA
DA
DA
5
5
5
N
1
3.39
0.50
117.70
121.09
A
A
A
C5
C6
N1
DA
DA
DA
5
5
5
N
1
-5.44
0.60
118.60
113.16
A
A
A
N1
C6
N6
DA
DA
DA
5
5
5
N
1
-3.60
0.60
122.90
119.30
A
A
A
C6
C5
C7
DT
DT
DT
6
6
6
N
1
1.89
0.30
108.30
110.19
B
B
B
O4'
C1'
N9
DA
DA
DA
7
7
7
N
1
-3.44
0.50
117.00
113.56
B
B
B
C4
C5
C6
DA
DA
DA
7
7
7
N
1
3.53
0.50
117.70
121.23
B
B
B
C5
C6
N1
DA
DA
DA
7
7
7
N
1
-5.53
0.60
118.60
113.07
B
B
B
N1
C6
N6
DA
DA
DA
7
7
7
N
1
2.34
0.30
108.30
110.64
B
B
B
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
2.56
0.30
108.30
110.86
B
B
B
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
2.51
0.40
121.90
124.41
B
B
B
N3
C4
C5
DC
DC
DC
10
10
10
N
1
-4.38
0.70
121.90
117.52
B
B
B
N3
C2
O2
DC
DC
DC
10
10
10
N
1
2.79
0.30
108.30
111.09
B
B
B
O4'
C1'
N9
DA
DA
DA
11
11
11
N
1
3.36
0.50
117.70
121.06
B
B
B
C5
C6
N1
DA
DA
DA
11
11
11
N
1
-4.37
0.60
118.60
114.23
B
B
B
N1
C6
N6
DA
DA
DA
11
11
11
N
1
3.73
0.30
108.30
112.03
B
B
B
O4'
C1'
N1
DT
DT
DT
12
12
12
N
1
-3.61
0.60
122.90
119.29
B
B
B
C6
C5
C7
DT
DT
DT
12
12
12
N
MINIMIZED AVERAGE
The Solution Structure of the MLN 944-d(ATGCAT)2 Complex
1
N
N
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
DA
1
A
N1
DA
1
1_555
B
DT
12
B
N3
DT
6
1_555
hydrog
WATSON-CRICK
A
DA
1
A
N6
DA
1
1_555
B
DT
12
B
O4
DT
6
1_555
hydrog
WATSON-CRICK
A
DT
2
A
N3
DT
2
1_555
B
DA
11
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
2
A
O4
DT
2
1_555
B
DA
11
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
10
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
10
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
10
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
A
DC
4
A
N3
DC
4
1_555
B
DG
9
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
4
A
N4
DC
4
1_555
B
DG
9
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
4
A
O2
DC
4
1_555
B
DG
9
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
8
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
8
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
A
DT
6
A
N3
DT
6
1_555
B
DA
7
B
N1
DA
1
1_555
hydrog
WATSON-CRICK
A
DT
6
A
O4
DT
6
1_555
B
DA
7
B
N6
DA
1
1_555
DNA
BIS(PHENAZINE-1-CARBOXAMIDES), DNA, INTERCALATION, DRUG DESIGN, ANTICANCER DRUG.
4BZT
PDB
1
4BZT
1
6
4BZT
1
6
4BZT
A
1
1
6
7
12
4BZT
7
12
4BZT
B
1
1
6
BINDING SITE FOR RESIDUE XR2 A 13
A
XR2
13
Software
8
A
DT
2
A
DT
2
8
1_555
A
DG
3
A
DG
3
8
1_555
A
DC
4
A
DC
4
8
1_555
A
DA
5
A
DA
5
8
1_555
B
DT
8
B
DT
2
8
1_555
B
DG
9
B
DG
3
8
1_555
B
DC
10
B
DC
4
8
1_555
B
DA
11
B
DA
5
8
1_555
1
P 1