1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Serobian, A. Thomas, D.S. Ball, G.E. Denny, W.A. Wakelin, L.P.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C34 H38 N8 O2 4 590.718 1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H Y 144 N C Y 145 N C Y 146 N C Y 147 N C Y 148 N C Y 149 N C Y 150 N N Y 151 N N Y 152 N C Y 153 N C Y 154 N C Y 155 N C Y 156 N C Y 157 N C N 158 N C N 159 N C N 160 N O N 161 N N N 162 N C N 163 N C N 164 N N N 165 N C N 166 N N N 167 N C N 168 N O Y 169 N C Y 170 N C Y 171 N C Y 172 N C Y 173 N C Y 174 N N Y 175 N C Y 176 N C Y 177 N N Y 178 N C Y 179 N C Y 180 N C Y 181 N C Y 182 N C N 183 N C N 184 N C N 185 N C N 186 N N N 187 N C N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing Y 150 N doub Y 151 N sing N 152 N sing Y 153 N sing N 154 N sing Y 155 N doub N 156 N sing Y 157 N sing N 158 N sing Y 159 N sing Y 160 N doub Y 161 N doub Y 162 N sing Y 163 N sing N 164 N sing Y 165 N doub Y 166 N sing Y 167 N sing Y 168 N doub N 169 N sing Y 170 N sing N 171 N sing Y 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing Y 199 N doub Y 200 N sing Y 201 N sing N 202 N sing Y 203 N doub N 204 N sing Y 205 N sing N 206 N sing Y 207 N doub Y 208 N sing Y 209 N sing Y 210 N doub Y 211 N sing Y 212 N sing Y 213 N sing Y 214 N doub N 215 N sing Y 216 N doub N 217 N sing Y 218 N sing N 219 N sing Y 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing US Biopolymers BIPMAA 0161 0006-3525 101 1099 10.1002/BIP.22513 24898663 The Solution Structure of Bis(Phenazine-1-Carboxamide)-DNA Complexes: Mln 944 Binding Corrected and Extended. 2014 10.2210/pdb4bzt/pdb pdb_00004bzt 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 THE DNA CONFORMATION IS IN THE FORM OF B-DNA. 1808.229 DNA 2 syn polymer 590.718 1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM 1 syn non-polymer no no (DA)(DT)(DG)(DC)(DA)(DT) ATGCAT A,B polydeoxyribonucleotide n n n n n n -5.135 1 20 A 1 B 12 0.251 A_DA1:DT12_B 1 -12.947 0.132 0.069 0.017 -0.581 1 20 A 2 B 11 -1.758 A_DT2:DA11_B 2 -11.392 -0.056 0.143 -0.028 5.788 1 19 A 3 B 10 0.616 A_DG3:DC10_B 3 -6.371 -0.421 0.388 -0.098 -5.088 1 19 A 4 B 9 0.880 A_DC4:DG9_B 4 -8.058 0.489 0.401 -0.151 -6.274 1 20 A 5 B 8 -0.121 A_DA5:DT8_B 5 -21.292 0.182 0.440 -0.043 -14.831 1 20 A 6 B 7 -3.903 A_DT6:DA7_B 6 -20.871 -0.353 0.541 0.027 3.183 28.263 A A 1 2 2.330 B B 12 11 3.235 1.137 -0.882 -1.568 AA_DA1DT2:DA11DT12_BB 1 -0.418 0.856 28.237 -3.470 1.711 5.899 19.138 A A 2 3 -23.306 B B 11 10 6.497 -7.539 0.404 0.133 AA_DT2DG3:DC10DA11_BB 2 -0.966 2.986 17.577 7.992 -2.187 3.382 41.341 A A 3 4 -7.344 B B 10 9 3.577 -5.172 0.058 1.414 AA_DG3DC4:DG9DC10_BB 3 0.127 -0.180 41.030 2.595 -0.067 4.493 11.668 A A 4 5 -39.731 B B 9 8 6.826 -7.423 0.285 1.042 AA_DC4DA5:DT8DG9_BB 4 -1.580 8.456 8.870 25.199 -5.672 3.683 33.428 A A 5 6 -7.988 B B 8 7 3.467 -4.581 -0.534 -1.766 AA_DA5DT6:DA7DT8_BB 5 -0.823 1.436 33.112 -2.239 0.779 chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer struct_site repository Initial release Structure summary Database references Data collection Database references Derived calculations Other 1 0 2013-08-21 1 1 2013-09-04 1 2 2014-09-03 1 3 2024-05-15 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_cs _pdbx_database_status.status_code_mr _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id SOLUTION STRUCTURE OF THE MLN 944-D(TATGCATA)2 COMPLEX THE SOLUTION STRUCTURE OF THE MLN 944-D(TACGCGTA)2 COMPLEX PDBE Y PDBE 2013-07-30 REL REL REL XR2 1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM EUROGENTEC 32630 SYNTHETIC CONSTRUCT sample NONE DISTANCE RESTRAINTS 1 1 NOESY COSY TOCSY 31P HSQC 15N HSQC 80 mM 5.0 pH 1.0 atm 288.0 K AMBER 10% WATER/90% D2O D.A.CASE,ET.AL. refinement Amber structure solution TopSpin 3.1 700 Bruker AVANCE XR2 13 2 XR2 XR2 13 A DA 1 n 1 DA 1 A DT 2 n 2 DT 2 A DG 3 n 3 DG 3 A DC 4 n 4 DC 4 A DA 5 n 5 DA 5 A DT 6 n 6 DT 6 A DA 7 n 1 DA 7 B DT 8 n 2 DT 8 B DG 9 n 3 DG 9 B DC 10 n 4 DC 10 B DA 11 n 5 DA 11 B DT 12 n 6 DT 12 B author_and_software_defined_assembly PQS 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DA 5 0.075 SIDE CHAIN 1 B DT 8 0.074 SIDE CHAIN 1 1.94 0.30 108.30 110.24 A A A O4' C1' N9 DA DA DA 1 1 1 N 1 -3.70 0.50 117.00 113.30 A A A C4 C5 C6 DA DA DA 1 1 1 N 1 3.65 0.50 117.70 121.35 A A A C5 C6 N1 DA DA DA 1 1 1 N 1 -5.19 0.60 118.60 113.41 A A A N1 C6 N6 DA DA DA 1 1 1 N 1 2.43 0.30 108.30 110.73 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 1.81 0.30 108.30 110.11 A A A O4' C1' N1 DC DC DC 4 4 4 N 1 2.22 0.30 108.30 110.52 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 -3.63 0.50 117.00 113.37 A A A C4 C5 C6 DA DA DA 5 5 5 N 1 3.39 0.50 117.70 121.09 A A A C5 C6 N1 DA DA DA 5 5 5 N 1 -5.44 0.60 118.60 113.16 A A A N1 C6 N6 DA DA DA 5 5 5 N 1 -3.60 0.60 122.90 119.30 A A A C6 C5 C7 DT DT DT 6 6 6 N 1 1.89 0.30 108.30 110.19 B B B O4' C1' N9 DA DA DA 7 7 7 N 1 -3.44 0.50 117.00 113.56 B B B C4 C5 C6 DA DA DA 7 7 7 N 1 3.53 0.50 117.70 121.23 B B B C5 C6 N1 DA DA DA 7 7 7 N 1 -5.53 0.60 118.60 113.07 B B B N1 C6 N6 DA DA DA 7 7 7 N 1 2.34 0.30 108.30 110.64 B B B O4' C1' N1 DT DT DT 8 8 8 N 1 2.56 0.30 108.30 110.86 B B B O4' C1' N9 DG DG DG 9 9 9 N 1 2.51 0.40 121.90 124.41 B B B N3 C4 C5 DC DC DC 10 10 10 N 1 -4.38 0.70 121.90 117.52 B B B N3 C2 O2 DC DC DC 10 10 10 N 1 2.79 0.30 108.30 111.09 B B B O4' C1' N9 DA DA DA 11 11 11 N 1 3.36 0.50 117.70 121.06 B B B C5 C6 N1 DA DA DA 11 11 11 N 1 -4.37 0.60 118.60 114.23 B B B N1 C6 N6 DA DA DA 11 11 11 N 1 3.73 0.30 108.30 112.03 B B B O4' C1' N1 DT DT DT 12 12 12 N 1 -3.61 0.60 122.90 119.29 B B B C6 C5 C7 DT DT DT 12 12 12 N MINIMIZED AVERAGE The Solution Structure of the MLN 944-d(ATGCAT)2 Complex 1 N N 1 N N 2 N N hydrog WATSON-CRICK A DA 1 A N1 DA 1 1_555 B DT 12 B N3 DT 6 1_555 hydrog WATSON-CRICK A DA 1 A N6 DA 1 1_555 B DT 12 B O4 DT 6 1_555 hydrog WATSON-CRICK A DT 2 A N3 DT 2 1_555 B DA 11 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 2 A O4 DT 2 1_555 B DA 11 B N6 DA 5 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 10 B N3 DC 4 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 10 B O2 DC 4 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 10 B N4 DC 4 1_555 hydrog WATSON-CRICK A DC 4 A N3 DC 4 1_555 B DG 9 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 4 A N4 DC 4 1_555 B DG 9 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 4 A O2 DC 4 1_555 B DG 9 B N2 DG 3 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 8 B N3 DT 2 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 8 B O4 DT 2 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 6 1_555 B DA 7 B N1 DA 1 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 6 1_555 B DA 7 B N6 DA 1 1_555 DNA BIS(PHENAZINE-1-CARBOXAMIDES), DNA, INTERCALATION, DRUG DESIGN, ANTICANCER DRUG. 4BZT PDB 1 4BZT 1 6 4BZT 1 6 4BZT A 1 1 6 7 12 4BZT 7 12 4BZT B 1 1 6 BINDING SITE FOR RESIDUE XR2 A 13 A XR2 13 Software 8 A DT 2 A DT 2 8 1_555 A DG 3 A DG 3 8 1_555 A DC 4 A DC 4 8 1_555 A DA 5 A DA 5 8 1_555 B DT 8 B DT 2 8 1_555 B DG 9 B DG 3 8 1_555 B DC 10 B DC 4 8 1_555 B DA 11 B DA 5 8 1_555 1 P 1