0.014678
0.000000
0.000000
0.000000
0.014678
0.000000
0.000000
0.000000
0.010838
0.00000
0.00000
0.00000
Nachtergaele, S.
Whalen, D.M.
Mydock, L.K.
Zhao, Z.
Malinauskas, T.
Krishnan, K.
Ingham, P.W.
Covey, D.F.
Rohatgi, R.
Siebold, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
68.130
68.130
92.270
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Elife
2050-084X
2
01340
10.7554/ELIFE.01340
24171105
Structure and Function of the Smoothened Extracellular Domain in Vertebrate Hedgehog Signaling
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
ID23-1
ESRF
0.979
SYNCHROTRON
ESRF BEAMLINE ID23-1
22331.754
SMOOTHENED
CYSTEINE-RICH DOMAIN (CRD), RESIDUES 28-210
2
man
polymer
65.409
ZINC ION
1
syn
non-polymer
22.990
SODIUM ION
3
syn
non-polymer
18.015
water
28
nat
water
no
yes
(MSE)AVILHPNETIFNDFCKKSTTCEVLKYNTCLGSPLPYTHTSLILAEDSETQEEAFEKLA(MSE)WSGLRNAPRCWA
VIQPLLCAVY(MSE)PKCENGKVELPSQHLCQATRNPCSIVERERGWPNFLKCENKEQFPKGCQNEVQKLKFNTSGQCEA
PLVKTDIQASWYKDVEGCGIQCDNPLFTEDEHSD(MSE)HKLEHHHHHH
MAVILHPNETIFNDFCKKSTTCEVLKYNTCLGSPLPYTHTSLILAEDSETQEEAFEKLAMWSGLRNAPRCWAVIQPLLCA
VYMPKCENGKVELPSQHLCQATRNPCSIVERERGWPNFLKCENKEQFPKGCQNEVQKLKFNTSGQCEAPLVKTDIQASWY
KDVEGCGIQCDNPLFTEDEHSDMHKLEHHHHHH
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ZEBRAFISH
sample
7955
DANIO RERIO
469008
ESCHERICHIA COLI
BL21(DE3)
ROSETTA PLYSS
PLASMID
PET22B
1
2.03
38.86
NONE
7.0
100 MM HEPES PH7.0, PEG 6000 20%, 10 MM ZNCL2
repository
Initial release
Database references
1
0
2013-11-06
1
1
2013-11-13
CRYSTAL STRUCTURE OF THE SMOOTHENED CRD, NATIVE
PDBE
Y
PDBE
2013-09-20
REL
ZN
ZINC ION
NA
SODIUM ION
HOH
water
CONSTRUCT CONTAINS ADDITIONAL N-TERMINAL (MA) AND C-
TERMINAL (KLEHHHHHH) RESIDUES.
ZN
1158
2
ZN
ZN
1158
A
NA
1159
3
NA
NA
1159
A
NA
1158
3
NA
NA
1158
B
NA
1159
3
NA
NA
1159
B
HOH
2001
4
HOH
HOH
2001
A
HOH
2002
4
HOH
HOH
2002
A
HOH
2003
4
HOH
HOH
2003
A
HOH
2004
4
HOH
HOH
2004
A
HOH
2005
4
HOH
HOH
2005
A
HOH
2006
4
HOH
HOH
2006
A
HOH
2007
4
HOH
HOH
2007
A
HOH
2008
4
HOH
HOH
2008
A
HOH
2009
4
HOH
HOH
2009
A
HOH
2010
4
HOH
HOH
2010
A
HOH
2011
4
HOH
HOH
2011
A
HOH
2012
4
HOH
HOH
2012
A
HOH
2013
4
HOH
HOH
2013
A
HOH
2014
4
HOH
HOH
2014
A
HOH
2015
4
HOH
HOH
2015
A
HOH
2016
4
HOH
HOH
2016
A
HOH
2001
4
HOH
HOH
2001
B
HOH
2002
4
HOH
HOH
2002
B
HOH
2003
4
HOH
HOH
2003
B
HOH
2004
4
HOH
HOH
2004
B
HOH
2005
4
HOH
HOH
2005
B
HOH
2006
4
HOH
HOH
2006
B
HOH
2007
4
HOH
HOH
2007
B
HOH
2008
4
HOH
HOH
2008
B
HOH
2009
4
HOH
HOH
2009
B
HOH
2010
4
HOH
HOH
2010
B
HOH
2011
4
HOH
HOH
2011
B
HOH
2012
4
HOH
HOH
2012
B
n
1
27
A
n
2
28
A
n
3
29
A
n
4
30
A
n
5
31
A
n
6
32
A
n
7
33
A
n
8
34
A
n
9
35
A
n
10
36
A
n
11
37
A
n
12
38
A
n
13
39
A
n
14
40
A
PHE
41
n
15
PHE
41
A
CYS
42
n
16
CYS
42
A
LYS
43
n
17
LYS
43
A
LYS
44
n
18
LYS
44
A
SER
45
n
19
SER
45
A
THR
46
n
20
THR
46
A
THR
47
n
21
THR
47
A
CYS
48
n
22
CYS
48
A
GLU
49
n
23
GLU
49
A
VAL
50
n
24
VAL
50
A
LEU
51
n
25
LEU
51
A
LYS
52
n
26
LYS
52
A
TYR
53
n
27
TYR
53
A
ASN
54
n
28
ASN
54
A
THR
55
n
29
THR
55
A
CYS
56
n
30
CYS
56
A
LEU
57
n
31
LEU
57
A
GLY
58
n
32
GLY
58
A
SER
59
n
33
SER
59
A
PRO
60
n
34
PRO
60
A
LEU
61
n
35
LEU
61
A
PRO
62
n
36
PRO
62
A
TYR
63
n
37
TYR
63
A
THR
64
n
38
THR
64
A
HIS
65
n
39
HIS
65
A
THR
66
n
40
THR
66
A
SER
67
n
41
SER
67
A
LEU
68
n
42
LEU
68
A
ILE
69
n
43
ILE
69
A
LEU
70
n
44
LEU
70
A
ALA
71
n
45
ALA
71
A
GLU
72
n
46
GLU
72
A
ASP
73
n
47
ASP
73
A
SER
74
n
48
SER
74
A
GLU
75
n
49
GLU
75
A
THR
76
n
50
THR
76
A
GLN
77
n
51
GLN
77
A
GLU
78
n
52
GLU
78
A
GLU
79
n
53
GLU
79
A
ALA
80
n
54
ALA
80
A
PHE
81
n
55
PHE
81
A
GLU
82
n
56
GLU
82
A
LYS
83
n
57
LYS
83
A
LEU
84
n
58
LEU
84
A
ALA
85
n
59
ALA
85
A
MSE
86
n
60
MSE
86
A
TRP
87
n
61
TRP
87
A
SER
88
n
62
SER
88
A
GLY
89
n
63
GLY
89
A
LEU
90
n
64
LEU
90
A
ARG
91
n
65
ARG
91
A
ASN
92
n
66
ASN
92
A
ALA
93
n
67
ALA
93
A
PRO
94
n
68
PRO
94
A
ARG
95
n
69
ARG
95
A
CYS
96
n
70
CYS
96
A
TRP
97
n
71
TRP
97
A
ALA
98
n
72
ALA
98
A
VAL
99
n
73
VAL
99
A
ILE
100
n
74
ILE
100
A
GLN
101
n
75
GLN
101
A
PRO
102
n
76
PRO
102
A
LEU
103
n
77
LEU
103
A
LEU
104
n
78
LEU
104
A
CYS
105
n
79
CYS
105
A
ALA
106
n
80
ALA
106
A
VAL
107
n
81
VAL
107
A
TYR
108
n
82
TYR
108
A
MSE
109
n
83
MSE
109
A
PRO
110
n
84
PRO
110
A
LYS
111
n
85
LYS
111
A
CYS
112
n
86
CYS
112
A
GLU
113
n
87
GLU
113
A
ASN
114
n
88
ASN
114
A
GLY
115
n
89
GLY
115
A
LYS
116
n
90
LYS
116
A
VAL
117
n
91
VAL
117
A
GLU
118
n
92
GLU
118
A
LEU
119
n
93
LEU
119
A
PRO
120
n
94
PRO
120
A
SER
121
n
95
SER
121
A
GLN
122
n
96
GLN
122
A
HIS
123
n
97
HIS
123
A
LEU
124
n
98
LEU
124
A
CYS
125
n
99
CYS
125
A
GLN
126
n
100
GLN
126
A
ALA
127
n
101
ALA
127
A
THR
128
n
102
THR
128
A
ARG
129
n
103
ARG
129
A
ASN
130
n
104
ASN
130
A
PRO
131
n
105
PRO
131
A
CYS
132
n
106
CYS
132
A
SER
133
n
107
SER
133
A
ILE
134
n
108
ILE
134
A
VAL
135
n
109
VAL
135
A
GLU
136
n
110
GLU
136
A
ARG
137
n
111
ARG
137
A
GLU
138
n
112
GLU
138
A
ARG
139
n
113
ARG
139
A
GLY
140
n
114
GLY
140
A
TRP
141
n
115
TRP
141
A
PRO
142
n
116
PRO
142
A
ASN
143
n
117
ASN
143
A
PHE
144
n
118
PHE
144
A
LEU
145
n
119
LEU
145
A
LYS
146
n
120
LYS
146
A
CYS
147
n
121
CYS
147
A
GLU
148
n
122
GLU
148
A
ASN
149
n
123
ASN
149
A
LYS
150
n
124
LYS
150
A
GLU
151
n
125
GLU
151
A
GLN
152
n
126
GLN
152
A
PHE
153
n
127
PHE
153
A
PRO
154
n
128
PRO
154
A
LYS
155
n
129
LYS
155
A
GLY
156
n
130
GLY
156
A
CYS
157
n
131
CYS
157
A
n
132
158
A
n
133
159
A
n
134
160
A
n
135
161
A
n
136
162
A
n
137
163
A
n
138
164
A
n
139
165
A
n
140
166
A
n
141
167
A
n
142
168
A
n
143
169
A
n
144
170
A
n
145
171
A
n
146
172
A
n
147
173
A
n
148
174
A
n
149
175
A
n
150
176
A
n
151
177
A
n
152
178
A
n
153
179
A
n
154
180
A
n
155
181
A
n
156
182
A
n
157
183
A
n
158
184
A
n
159
185
A
n
160
186
A
n
161
187
A
n
162
188
A
n
163
189
A
n
164
190
A
n
165
191
A
n
166
192
A
n
167
193
A
n
168
194
A
n
169
195
A
n
170
196
A
n
171
197
A
n
172
198
A
n
173
199
A
n
174
200
A
n
175
201
A
n
176
202
A
n
177
203
A
n
178
204
A
n
179
205
A
n
180
206
A
n
181
207
A
n
182
208
A
n
183
209
A
n
184
210
A
n
185
211
A
n
186
212
A
n
187
213
A
n
188
214
A
n
189
215
A
n
190
216
A
n
191
217
A
n
192
218
A
n
193
219
A
n
1
27
B
n
2
28
B
n
3
29
B
n
4
30
B
n
5
31
B
n
6
32
B
n
7
33
B
n
8
34
B
n
9
35
B
n
10
36
B
n
11
37
B
n
12
38
B
n
13
39
B
n
14
40
B
PHE
41
n
15
PHE
41
B
CYS
42
n
16
CYS
42
B
LYS
43
n
17
LYS
43
B
LYS
44
n
18
LYS
44
B
SER
45
n
19
SER
45
B
THR
46
n
20
THR
46
B
THR
47
n
21
THR
47
B
CYS
48
n
22
CYS
48
B
GLU
49
n
23
GLU
49
B
VAL
50
n
24
VAL
50
B
LEU
51
n
25
LEU
51
B
LYS
52
n
26
LYS
52
B
TYR
53
n
27
TYR
53
B
ASN
54
n
28
ASN
54
B
THR
55
n
29
THR
55
B
CYS
56
n
30
CYS
56
B
LEU
57
n
31
LEU
57
B
GLY
58
n
32
GLY
58
B
SER
59
n
33
SER
59
B
PRO
60
n
34
PRO
60
B
LEU
61
n
35
LEU
61
B
PRO
62
n
36
PRO
62
B
TYR
63
n
37
TYR
63
B
THR
64
n
38
THR
64
B
HIS
65
n
39
HIS
65
B
THR
66
n
40
THR
66
B
SER
67
n
41
SER
67
B
LEU
68
n
42
LEU
68
B
ILE
69
n
43
ILE
69
B
LEU
70
n
44
LEU
70
B
ALA
71
n
45
ALA
71
B
GLU
72
n
46
GLU
72
B
ASP
73
n
47
ASP
73
B
SER
74
n
48
SER
74
B
GLU
75
n
49
GLU
75
B
THR
76
n
50
THR
76
B
GLN
77
n
51
GLN
77
B
GLU
78
n
52
GLU
78
B
GLU
79
n
53
GLU
79
B
ALA
80
n
54
ALA
80
B
PHE
81
n
55
PHE
81
B
GLU
82
n
56
GLU
82
B
LYS
83
n
57
LYS
83
B
LEU
84
n
58
LEU
84
B
ALA
85
n
59
ALA
85
B
MSE
86
n
60
MSE
86
B
TRP
87
n
61
TRP
87
B
SER
88
n
62
SER
88
B
GLY
89
n
63
GLY
89
B
LEU
90
n
64
LEU
90
B
ARG
91
n
65
ARG
91
B
ASN
92
n
66
ASN
92
B
ALA
93
n
67
ALA
93
B
PRO
94
n
68
PRO
94
B
ARG
95
n
69
ARG
95
B
CYS
96
n
70
CYS
96
B
TRP
97
n
71
TRP
97
B
ALA
98
n
72
ALA
98
B
VAL
99
n
73
VAL
99
B
ILE
100
n
74
ILE
100
B
GLN
101
n
75
GLN
101
B
PRO
102
n
76
PRO
102
B
LEU
103
n
77
LEU
103
B
LEU
104
n
78
LEU
104
B
CYS
105
n
79
CYS
105
B
ALA
106
n
80
ALA
106
B
VAL
107
n
81
VAL
107
B
TYR
108
n
82
TYR
108
B
MSE
109
n
83
MSE
109
B
PRO
110
n
84
PRO
110
B
LYS
111
n
85
LYS
111
B
CYS
112
n
86
CYS
112
B
GLU
113
n
87
GLU
113
B
ASN
114
n
88
ASN
114
B
GLY
115
n
89
GLY
115
B
LYS
116
n
90
LYS
116
B
VAL
117
n
91
VAL
117
B
GLU
118
n
92
GLU
118
B
LEU
119
n
93
LEU
119
B
PRO
120
n
94
PRO
120
B
SER
121
n
95
SER
121
B
GLN
122
n
96
GLN
122
B
HIS
123
n
97
HIS
123
B
LEU
124
n
98
LEU
124
B
CYS
125
n
99
CYS
125
B
GLN
126
n
100
GLN
126
B
ALA
127
n
101
ALA
127
B
THR
128
n
102
THR
128
B
ARG
129
n
103
ARG
129
B
ASN
130
n
104
ASN
130
B
PRO
131
n
105
PRO
131
B
CYS
132
n
106
CYS
132
B
SER
133
n
107
SER
133
B
ILE
134
n
108
ILE
134
B
VAL
135
n
109
VAL
135
B
GLU
136
n
110
GLU
136
B
ARG
137
n
111
ARG
137
B
GLU
138
n
112
GLU
138
B
ARG
139
n
113
ARG
139
B
GLY
140
n
114
GLY
140
B
TRP
141
n
115
TRP
141
B
PRO
142
n
116
PRO
142
B
ASN
143
n
117
ASN
143
B
PHE
144
n
118
PHE
144
B
LEU
145
n
119
LEU
145
B
LYS
146
n
120
LYS
146
B
CYS
147
n
121
CYS
147
B
GLU
148
n
122
GLU
148
B
ASN
149
n
123
ASN
149
B
LYS
150
n
124
LYS
150
B
GLU
151
n
125
GLU
151
B
GLN
152
n
126
GLN
152
B
PHE
153
n
127
PHE
153
B
PRO
154
n
128
PRO
154
B
LYS
155
n
129
LYS
155
B
GLY
156
n
130
GLY
156
B
CYS
157
n
131
CYS
157
B
n
132
158
B
n
133
159
B
n
134
160
B
n
135
161
B
n
136
162
B
n
137
163
B
n
138
164
B
n
139
165
B
n
140
166
B
n
141
167
B
n
142
168
B
n
143
169
B
n
144
170
B
n
145
171
B
n
146
172
B
n
147
173
B
n
148
174
B
n
149
175
B
n
150
176
B
n
151
177
B
n
152
178
B
n
153
179
B
n
154
180
B
n
155
181
B
n
156
182
B
n
157
183
B
n
158
184
B
n
159
185
B
n
160
186
B
n
161
187
B
n
162
188
B
n
163
189
B
n
164
190
B
n
165
191
B
n
166
192
B
n
167
193
B
n
168
194
B
n
169
195
B
n
170
196
B
n
171
197
B
n
172
198
B
n
173
199
B
n
174
200
B
n
175
201
B
n
176
202
B
n
177
203
B
n
178
204
B
n
179
205
B
n
180
206
B
n
181
207
B
n
182
208
B
n
183
209
B
n
184
210
B
n
185
211
B
n
186
212
B
n
187
213
B
n
188
214
B
n
189
215
B
n
190
216
B
n
191
217
B
n
192
218
B
n
193
219
B
6.8851
-3.5463
-1.3107
2.8710
0.9248
2.8032
-0.1405
-1.0084
0.4325
0.1959
0.2322
-0.3023
-0.0080
0.4216
-0.0917
0.0263
-0.0178
-0.0047
0.2764
-0.0244
0.0669
refined
-4.3680
-13.4760
12.1200
X-RAY DIFFRACTION
6.8099
-1.5670
-3.1488
1.5499
0.1649
7.8870
-0.0019
-0.6916
0.1727
0.1309
0.2384
-0.3751
0.5169
1.5680
-0.2364
0.1802
0.0936
-0.0096
0.4062
-0.1000
0.1544
refined
-19.5020
-8.3320
36.6460
X-RAY DIFFRACTION
A
41
A
157
X-RAY DIFFRACTION
1
B
41
B
157
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
B
HIS
65
B
NE2
HIS
39
8_545
A
ZN
1158
C
ZN
ZN
1_555
B
GLU
75
B
OE2
GLU
49
6_545
89.9
B
HIS
65
B
NE2
HIS
39
8_545
A
ZN
1158
C
ZN
ZN
1_555
A
HIS
65
A
NE2
HIS
39
1_555
111.6
B
GLU
75
B
OE2
GLU
49
6_545
A
ZN
1158
C
ZN
ZN
1_555
A
HIS
65
A
NE2
HIS
39
1_555
88.3
B
HIS
65
B
NE2
HIS
39
8_545
A
ZN
1158
C
ZN
ZN
1_555
B
GLU
75
B
OE1
GLU
49
6_545
127.7
B
GLU
75
B
OE2
GLU
49
6_545
A
ZN
1158
C
ZN
ZN
1_555
B
GLU
75
B
OE1
GLU
49
6_545
67.3
A
HIS
65
A
NE2
HIS
39
1_555
A
ZN
1158
C
ZN
ZN
1_555
B
GLU
75
B
OE1
GLU
49
6_545
113.9
A
SER
74
A
O
SER
48
1_555
A
NA
1159
D
NA
NA
1_555
A
ALA
71
A
O
ALA
45
1_555
80.6
A
SER
74
A
O
SER
48
1_555
A
NA
1159
D
NA
NA
1_555
A
LEU
68
A
O
LEU
42
1_555
110.3
A
ALA
71
A
O
ALA
45
1_555
A
NA
1159
D
NA
NA
1_555
A
LEU
68
A
O
LEU
42
1_555
73.7
B
SER
67
B
O
SER
41
1_555
B
NA
1158
E
NA
NA
1_555
B
VAL
107
B
O
VAL
81
1_555
134.9
B
LEU
68
B
O
LEU
42
1_555
B
NA
1159
F
NA
NA
1_555
B
ALA
71
B
O
ALA
45
1_555
85.2
B
LEU
68
B
O
LEU
42
1_555
B
NA
1159
F
NA
NA
1_555
B
HOH
2005
H
O
HOH
1_555
171.1
B
ALA
71
B
O
ALA
45
1_555
B
NA
1159
F
NA
NA
1_555
B
HOH
2005
H
O
HOH
1_555
89.6
B
LEU
68
B
O
LEU
42
1_555
B
NA
1159
F
NA
NA
1_555
B
HOH
2004
H
O
HOH
1_555
93.1
B
ALA
71
B
O
ALA
45
1_555
B
NA
1159
F
NA
NA
1_555
B
HOH
2004
H
O
HOH
1_555
88.7
B
HOH
2005
H
O
HOH
1_555
B
NA
1159
F
NA
NA
1_555
B
HOH
2004
H
O
HOH
1_555
79.6
B
LEU
68
B
O
LEU
42
1_555
B
NA
1159
F
NA
NA
1_555
B
SER
74
B
O
SER
48
1_555
103.6
B
ALA
71
B
O
ALA
45
1_555
B
NA
1159
F
NA
NA
1_555
B
SER
74
B
O
SER
48
1_555
84.9
B
HOH
2005
H
O
HOH
1_555
B
NA
1159
F
NA
NA
1_555
B
SER
74
B
O
SER
48
1_555
83.1
B
HOH
2004
H
O
HOH
1_555
B
NA
1159
F
NA
NA
1_555
B
SER
74
B
O
SER
48
1_555
161.5
A
MSE
86
SELENOMETHIONINE
A
MSE
60
MET
A
MSE
109
SELENOMETHIONINE
A
MSE
83
MET
B
MSE
86
SELENOMETHIONINE
B
MSE
60
MET
B
MSE
109
SELENOMETHIONINE
B
MSE
83
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
44
A
N
LYS
18
A
O
VAL
117
A
O
VAL
91
A
N
LYS
116
A
N
LYS
90
A
O
GLU
113
A
O
GLU
87
A
N
GLU
49
A
N
GLU
23
A
O
THR
66
A
O
THR
40
A
N
CYS
56
A
N
CYS
30
A
O
SER
59
A
O
SER
33
B
N
LYS
44
B
N
LYS
18
B
O
VAL
117
B
O
VAL
91
B
N
LYS
116
B
N
LYS
90
B
O
GLU
113
B
O
GLU
87
B
N
GLU
49
B
N
GLU
23
B
O
THR
66
B
O
THR
40
B
N
CYS
56
B
N
CYS
30
B
O
SER
59
B
O
SER
33
1
A
MSE
27
A
MSE
1
1
Y
1
A
ALA
28
A
ALA
2
1
Y
1
A
VAL
29
A
VAL
3
1
Y
1
A
ILE
30
A
ILE
4
1
Y
1
A
LEU
31
A
LEU
5
1
Y
1
A
HIS
32
A
HIS
6
1
Y
1
A
PRO
33
A
PRO
7
1
Y
1
A
ASN
34
A
ASN
8
1
Y
1
A
GLU
35
A
GLU
9
1
Y
1
A
THR
36
A
THR
10
1
Y
1
A
ILE
37
A
ILE
11
1
Y
1
A
PHE
38
A
PHE
12
1
Y
1
A
ASN
39
A
ASN
13
1
Y
1
A
ASP
40
A
ASP
14
1
Y
1
A
GLN
158
A
GLN
132
1
Y
1
A
ASN
159
A
ASN
133
1
Y
1
A
GLU
160
A
GLU
134
1
Y
1
A
VAL
161
A
VAL
135
1
Y
1
A
GLN
162
A
GLN
136
1
Y
1
A
LYS
163
A
LYS
137
1
Y
1
A
LEU
164
A
LEU
138
1
Y
1
A
LYS
165
A
LYS
139
1
Y
1
A
PHE
166
A
PHE
140
1
Y
1
A
ASN
167
A
ASN
141
1
Y
1
A
THR
168
A
THR
142
1
Y
1
A
SER
169
A
SER
143
1
Y
1
A
GLY
170
A
GLY
144
1
Y
1
A
GLN
171
A
GLN
145
1
Y
1
A
CYS
172
A
CYS
146
1
Y
1
A
GLU
173
A
GLU
147
1
Y
1
A
ALA
174
A
ALA
148
1
Y
1
A
PRO
175
A
PRO
149
1
Y
1
A
LEU
176
A
LEU
150
1
Y
1
A
VAL
177
A
VAL
151
1
Y
1
A
LYS
178
A
LYS
152
1
Y
1
A
THR
179
A
THR
153
1
Y
1
A
ASP
180
A
ASP
154
1
Y
1
A
ILE
181
A
ILE
155
1
Y
1
A
GLN
182
A
GLN
156
1
Y
1
A
ALA
183
A
ALA
157
1
Y
1
A
SER
184
A
SER
158
1
Y
1
A
TRP
185
A
TRP
159
1
Y
1
A
TYR
186
A
TYR
160
1
Y
1
A
LYS
187
A
LYS
161
1
Y
1
A
ASP
188
A
ASP
162
1
Y
1
A
VAL
189
A
VAL
163
1
Y
1
A
GLU
190
A
GLU
164
1
Y
1
A
GLY
191
A
GLY
165
1
Y
1
A
CYS
192
A
CYS
166
1
Y
1
A
GLY
193
A
GLY
167
1
Y
1
A
ILE
194
A
ILE
168
1
Y
1
A
GLN
195
A
GLN
169
1
Y
1
A
CYS
196
A
CYS
170
1
Y
1
A
ASP
197
A
ASP
171
1
Y
1
A
ASN
198
A
ASN
172
1
Y
1
A
PRO
199
A
PRO
173
1
Y
1
A
LEU
200
A
LEU
174
1
Y
1
A
PHE
201
A
PHE
175
1
Y
1
A
THR
202
A
THR
176
1
Y
1
A
GLU
203
A
GLU
177
1
Y
1
A
ASP
204
A
ASP
178
1
Y
1
A
GLU
205
A
GLU
179
1
Y
1
A
HIS
206
A
HIS
180
1
Y
1
A
SER
207
A
SER
181
1
Y
1
A
ASP
208
A
ASP
182
1
Y
1
A
MSE
209
A
MSE
183
1
Y
1
A
HIS
210
A
HIS
184
1
Y
1
A
LYS
211
A
LYS
185
1
Y
1
A
LEU
212
A
LEU
186
1
Y
1
A
GLU
213
A
GLU
187
1
Y
1
A
HIS
214
A
HIS
188
1
Y
1
A
HIS
215
A
HIS
189
1
Y
1
A
HIS
216
A
HIS
190
1
Y
1
A
HIS
217
A
HIS
191
1
Y
1
A
HIS
218
A
HIS
192
1
Y
1
A
HIS
219
A
HIS
193
1
Y
1
B
MSE
27
B
MSE
1
1
Y
1
B
ALA
28
B
ALA
2
1
Y
1
B
VAL
29
B
VAL
3
1
Y
1
B
ILE
30
B
ILE
4
1
Y
1
B
LEU
31
B
LEU
5
1
Y
1
B
HIS
32
B
HIS
6
1
Y
1
B
PRO
33
B
PRO
7
1
Y
1
B
ASN
34
B
ASN
8
1
Y
1
B
GLU
35
B
GLU
9
1
Y
1
B
THR
36
B
THR
10
1
Y
1
B
ILE
37
B
ILE
11
1
Y
1
B
PHE
38
B
PHE
12
1
Y
1
B
ASN
39
B
ASN
13
1
Y
1
B
ASP
40
B
ASP
14
1
Y
1
B
GLN
158
B
GLN
132
1
Y
1
B
ASN
159
B
ASN
133
1
Y
1
B
GLU
160
B
GLU
134
1
Y
1
B
VAL
161
B
VAL
135
1
Y
1
B
GLN
162
B
GLN
136
1
Y
1
B
LYS
163
B
LYS
137
1
Y
1
B
LEU
164
B
LEU
138
1
Y
1
B
LYS
165
B
LYS
139
1
Y
1
B
PHE
166
B
PHE
140
1
Y
1
B
ASN
167
B
ASN
141
1
Y
1
B
THR
168
B
THR
142
1
Y
1
B
SER
169
B
SER
143
1
Y
1
B
GLY
170
B
GLY
144
1
Y
1
B
GLN
171
B
GLN
145
1
Y
1
B
CYS
172
B
CYS
146
1
Y
1
B
GLU
173
B
GLU
147
1
Y
1
B
ALA
174
B
ALA
148
1
Y
1
B
PRO
175
B
PRO
149
1
Y
1
B
LEU
176
B
LEU
150
1
Y
1
B
VAL
177
B
VAL
151
1
Y
1
B
LYS
178
B
LYS
152
1
Y
1
B
THR
179
B
THR
153
1
Y
1
B
ASP
180
B
ASP
154
1
Y
1
B
ILE
181
B
ILE
155
1
Y
1
B
GLN
182
B
GLN
156
1
Y
1
B
ALA
183
B
ALA
157
1
Y
1
B
SER
184
B
SER
158
1
Y
1
B
TRP
185
B
TRP
159
1
Y
1
B
TYR
186
B
TYR
160
1
Y
1
B
LYS
187
B
LYS
161
1
Y
1
B
ASP
188
B
ASP
162
1
Y
1
B
VAL
189
B
VAL
163
1
Y
1
B
GLU
190
B
GLU
164
1
Y
1
B
GLY
191
B
GLY
165
1
Y
1
B
CYS
192
B
CYS
166
1
Y
1
B
GLY
193
B
GLY
167
1
Y
1
B
ILE
194
B
ILE
168
1
Y
1
B
GLN
195
B
GLN
169
1
Y
1
B
CYS
196
B
CYS
170
1
Y
1
B
ASP
197
B
ASP
171
1
Y
1
B
ASN
198
B
ASN
172
1
Y
1
B
PRO
199
B
PRO
173
1
Y
1
B
LEU
200
B
LEU
174
1
Y
1
B
PHE
201
B
PHE
175
1
Y
1
B
THR
202
B
THR
176
1
Y
1
B
GLU
203
B
GLU
177
1
Y
1
B
ASP
204
B
ASP
178
1
Y
1
B
GLU
205
B
GLU
179
1
Y
1
B
HIS
206
B
HIS
180
1
Y
1
B
SER
207
B
SER
181
1
Y
1
B
ASP
208
B
ASP
182
1
Y
1
B
MSE
209
B
MSE
183
1
Y
1
B
HIS
210
B
HIS
184
1
Y
1
B
LYS
211
B
LYS
185
1
Y
1
B
LEU
212
B
LEU
186
1
Y
1
B
GLU
213
B
GLU
187
1
Y
1
B
HIS
214
B
HIS
188
1
Y
1
B
HIS
215
B
HIS
189
1
Y
1
B
HIS
216
B
HIS
190
1
Y
1
B
HIS
217
B
HIS
191
1
Y
1
B
HIS
218
B
HIS
192
1
Y
1
B
HIS
219
B
HIS
193
1
Y
1
A
A
O
OE1
PHE
GLN
144
152
2.15
1
B
B
GLY
CYS
156
157
-149.27
1
3.60
0.50
120.30
123.90
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
129
129
129
N
1
-3.59
0.50
120.30
116.71
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
129
129
129
N
1
3.37
0.50
120.30
123.67
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
129
129
129
N
1
-3.84
0.50
120.30
116.46
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
129
129
129
N
1
6.61
1.10
114.20
120.81
B
B
B
CA
CB
SG
CYS
CYS
CYS
157
157
157
N
1
A
A
CB
CG
GLU
GLU
113
113
0.117
0.019
1.517
1.634
N
1
A
A
CD
OE2
GLU
GLU
113
113
0.074
0.011
1.252
1.326
N
1
A
B
OE2
OE2
GLU
GLU
113
79
1.78
1_555
6_545
1
B
HIS
123
83.58
-26.12
56.727
-0.10
0.00
0.00
-0.10
0.00
0.19
0.922
0.883
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.28406
0.23586
0.23803
2.30
30.47
483
9576
4.8
98.85
22.170
0.257
RANDOM
1
THROUGHOUT
SAD
0.533
0.296
0.80
0.80
1.20
NONE
MAXIMUM LIKELIHOOD
MASK
2.30
30.47
28
1886
4
0
1854
0.012
0.019
1910
0.005
0.020
1806
1.604
1.976
2594
1.258
3.010
4172
5.939
5.000
232
32.935
24.634
82
18.166
15.000
326
19.064
15.000
10
0.087
0.200
278
0.007
0.021
2116
0.004
0.020
414
1.654
2.728
934
1.654
2.725
933
2.587
4.077
1164
2.386
3.013
976
0.360
0.336
2.359
33
629
20
91.18
2.30
48.00
4C7A
10085
0.0
0.10
1
25.50
26.5
99.2
0.92
2.30
2.36
3.90
1
23.7
92.8
refinement
REFMAC
5.7.0032
phasing
PHENIX
SMOOTHENED
Crystal structure of the Smoothened CRD, selenomethionine-labeled
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
THR
76
A
THR
50
HELX_P
A
SER
88
A
SER
62
1
1
13
A
GLY
89
A
GLY
63
HELX_P
A
ASN
92
A
ASN
66
5
2
4
A
ALA
93
A
ALA
67
HELX_P
A
MSE
109
A
MSE
83
1
3
17
A
SER
121
A
SER
95
HELX_P
A
ALA
127
A
ALA
101
1
4
7
A
CYS
132
A
CYS
106
HELX_P
A
ARG
139
A
ARG
113
1
5
8
A
PRO
142
A
PRO
116
HELX_P
A
LYS
146
A
LYS
120
5
6
5
B
THR
76
B
THR
50
HELX_P
B
SER
88
B
SER
62
1
7
13
B
GLY
89
B
GLY
63
HELX_P
B
ASN
92
B
ASN
66
5
8
4
B
ALA
93
B
ALA
67
HELX_P
B
MSE
109
B
MSE
83
1
9
17
B
CYS
125
B
CYS
99
HELX_P
B
ASN
130
B
ASN
104
1
10
6
B
CYS
132
B
CYS
106
HELX_P
B
ARG
139
B
ARG
113
1
11
8
B
PRO
142
B
PRO
116
HELX_P
B
LYS
146
B
LYS
120
5
12
5
disulf
2.018
A
CYS
42
A
SG
CYS
16
1_555
A
CYS
157
A
SG
CYS
131
1_555
disulf
2.036
A
CYS
48
A
SG
CYS
22
1_555
A
CYS
112
A
SG
CYS
86
1_555
disulf
2.060
A
CYS
56
A
SG
CYS
30
1_555
A
CYS
105
A
SG
CYS
79
1_555
disulf
2.047
A
CYS
96
A
SG
CYS
70
1_555
A
CYS
132
A
SG
CYS
106
1_555
disulf
2.040
A
CYS
125
A
SG
CYS
99
1_555
A
CYS
147
A
SG
CYS
121
1_555
disulf
2.066
B
CYS
42
B
SG
CYS
16
1_555
B
CYS
157
B
SG
CYS
131
1_555
disulf
2.051
B
CYS
48
B
SG
CYS
22
1_555
B
CYS
112
B
SG
CYS
86
1_555
disulf
2.026
B
CYS
56
B
SG
CYS
30
1_555
B
CYS
105
B
SG
CYS
79
1_555
disulf
2.052
B
CYS
96
B
SG
CYS
70
1_555
B
CYS
132
B
SG
CYS
106
1_555
disulf
2.076
B
CYS
125
B
SG
CYS
99
1_555
B
CYS
147
B
SG
CYS
121
1_555
covale
1.327
A
ALA
85
A
C
ALA
59
1_555
A
MSE
86
A
N
MSE
60
1_555
covale
1.315
A
MSE
86
A
C
MSE
60
1_555
A
TRP
87
A
N
TRP
61
1_555
covale
1.330
A
TYR
108
A
C
TYR
82
1_555
A
MSE
109
A
N
MSE
83
1_555
covale
1.347
A
MSE
109
A
C
MSE
83
1_555
A
PRO
110
A
N
PRO
84
1_555
metalc
2.008
A
ZN
1158
C
ZN
ZN
1_555
B
HIS
65
B
NE2
HIS
39
8_545
metalc
2.061
A
ZN
1158
C
ZN
ZN
1_555
B
GLU
75
B
OE2
GLU
49
6_545
metalc
2.162
A
ZN
1158
C
ZN
ZN
1_555
A
HIS
65
A
NE2
HIS
39
1_555
metalc
1.865
A
ZN
1158
C
ZN
ZN
1_555
B
GLU
75
B
OE1
GLU
49
6_545
metalc
2.136
A
NA
1159
D
NA
NA
1_555
A
SER
74
A
O
SER
48
1_555
metalc
2.552
A
NA
1159
D
NA
NA
1_555
A
ALA
71
A
O
ALA
45
1_555
metalc
2.606
A
NA
1159
D
NA
NA
1_555
A
LEU
68
A
O
LEU
42
1_555
covale
1.332
B
ALA
85
B
C
ALA
59
1_555
B
MSE
86
B
N
MSE
60
1_555
covale
1.340
B
MSE
86
B
C
MSE
60
1_555
B
TRP
87
B
N
TRP
61
1_555
covale
1.336
B
TYR
108
B
C
TYR
82
1_555
B
MSE
109
B
N
MSE
83
1_555
covale
1.343
B
MSE
109
B
C
MSE
83
1_555
B
PRO
110
B
N
PRO
84
1_555
metalc
2.729
B
NA
1158
E
NA
NA
1_555
B
SER
67
B
O
SER
41
1_555
metalc
2.520
B
NA
1158
E
NA
NA
1_555
B
VAL
107
B
O
VAL
81
1_555
metalc
2.326
B
NA
1159
F
NA
NA
1_555
B
LEU
68
B
O
LEU
42
1_555
metalc
2.211
B
NA
1159
F
NA
NA
1_555
B
ALA
71
B
O
ALA
45
1_555
metalc
2.335
B
NA
1159
F
NA
NA
1_555
B
HOH
2005
H
O
HOH
1_555
metalc
2.457
B
NA
1159
F
NA
NA
1_555
B
HOH
2004
H
O
HOH
1_555
metalc
2.237
B
NA
1159
F
NA
NA
1_555
B
SER
74
B
O
SER
48
1_555
SIGNALING PROTEIN
SIGNALING PROTEIN
A
LYS
155
A
LYS
129
1
A
GLY
156
A
GLY
130
-4.72
given
-0.155400
0.927400
0.340200
0.948800
0.044290
0.312800
0.275100
0.371400
-0.886800
-12.10000
-6.13900
53.13000
Q90X26_DANRE
UNP
1
Q90X26
28
210
4C7A
28
210
Q90X26
A
1
2
184
28
210
4C7A
28
210
Q90X26
B
1
2
184
1
expression tag
MSE
27
4C7A
A
Q90X26
UNP
1
1
expression tag
LYS
211
4C7A
A
Q90X26
UNP
185
1
expression tag
LEU
212
4C7A
A
Q90X26
UNP
186
1
expression tag
GLU
213
4C7A
A
Q90X26
UNP
187
1
expression tag
HIS
214
4C7A
A
Q90X26
UNP
188
1
expression tag
HIS
215
4C7A
A
Q90X26
UNP
189
1
expression tag
HIS
216
4C7A
A
Q90X26
UNP
190
1
expression tag
HIS
217
4C7A
A
Q90X26
UNP
191
1
expression tag
HIS
218
4C7A
A
Q90X26
UNP
192
1
expression tag
HIS
219
4C7A
A
Q90X26
UNP
193
2
expression tag
MSE
27
4C7A
B
Q90X26
UNP
1
2
expression tag
LYS
211
4C7A
B
Q90X26
UNP
185
2
expression tag
LEU
212
4C7A
B
Q90X26
UNP
186
2
expression tag
GLU
213
4C7A
B
Q90X26
UNP
187
2
expression tag
HIS
214
4C7A
B
Q90X26
UNP
188
2
expression tag
HIS
215
4C7A
B
Q90X26
UNP
189
2
expression tag
HIS
216
4C7A
B
Q90X26
UNP
190
2
expression tag
HIS
217
4C7A
B
Q90X26
UNP
191
2
expression tag
HIS
218
4C7A
B
Q90X26
UNP
192
2
expression tag
HIS
219
4C7A
B
Q90X26
UNP
193
3
2
2
3
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
43
A
LYS
17
A
SER
45
A
SER
19
A
LYS
116
A
LYS
90
A
GLU
118
A
GLU
92
A
CYS
112
A
CYS
86
A
GLU
113
A
GLU
87
A
GLU
49
A
GLU
23
A
VAL
50
A
VAL
24
A
HIS
65
A
HIS
39
A
THR
66
A
THR
40
A
THR
55
A
THR
29
A
CYS
56
A
CYS
30
A
SER
59
A
SER
33
A
PRO
60
A
PRO
34
B
LYS
43
B
LYS
17
B
SER
45
B
SER
19
B
LYS
116
B
LYS
90
B
GLU
118
B
GLU
92
B
CYS
112
B
CYS
86
B
GLU
113
B
GLU
87
B
GLU
49
B
GLU
23
B
VAL
50
B
VAL
24
B
HIS
65
B
HIS
39
B
THR
66
B
THR
40
B
THR
55
B
THR
29
B
CYS
56
B
CYS
30
B
SER
59
B
SER
33
B
PRO
60
B
PRO
34
BINDING SITE FOR RESIDUE ZN A 1158
Software
4
BINDING SITE FOR RESIDUE NA B 1158
Software
7
BINDING SITE FOR RESIDUE NA B 1159
Software
5
BINDING SITE FOR RESIDUE NA A 1159
Software
3
A
THR
64
A
THR
38
4
1_555
A
HIS
65
A
HIS
39
4
1_555
B
HIS
65
B
HIS
39
4
8_545
B
GLU
75
B
GLU
49
4
6_545
B
SER
67
B
SER
41
7
1_555
B
LEU
68
B
LEU
42
7
1_555
B
ILE
69
B
ILE
43
7
1_555
B
LEU
70
B
LEU
44
7
1_555
B
ALA
71
B
ALA
45
7
1_555
B
VAL
107
B
VAL
81
7
1_555
B
PRO
110
B
PRO
84
7
1_555
B
LEU
68
B
LEU
42
5
1_555
B
ALA
71
B
ALA
45
5
1_555
B
SER
74
B
SER
48
5
1_555
B
HOH
2004
H
HOH
5
1_555
B
HOH
2005
H
HOH
5
1_555
A
LEU
68
A
LEU
42
3
1_555
A
ALA
71
A
ALA
45
3
1_555
A
SER
74
A
SER
48
3
1_555
96
P 43 21 2