0.014678 0.000000 0.000000 0.000000 0.014678 0.000000 0.000000 0.000000 0.010838 0.00000 0.00000 0.00000 Nachtergaele, S. Whalen, D.M. Mydock, L.K. Zhao, Z. Malinauskas, T. Krishnan, K. Ingham, P.W. Covey, D.F. Rohatgi, R. Siebold, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 68.130 68.130 92.270 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Elife 2050-084X 2 01340 10.7554/ELIFE.01340 24171105 Structure and Function of the Smoothened Extracellular Domain in Vertebrate Hedgehog Signaling 2013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 0.979 1.0 ID23-1 ESRF 0.979 SYNCHROTRON ESRF BEAMLINE ID23-1 22331.754 SMOOTHENED CYSTEINE-RICH DOMAIN (CRD), RESIDUES 28-210 2 man polymer 65.409 ZINC ION 1 syn non-polymer 22.990 SODIUM ION 3 syn non-polymer 18.015 water 28 nat water no yes (MSE)AVILHPNETIFNDFCKKSTTCEVLKYNTCLGSPLPYTHTSLILAEDSETQEEAFEKLA(MSE)WSGLRNAPRCWA VIQPLLCAVY(MSE)PKCENGKVELPSQHLCQATRNPCSIVERERGWPNFLKCENKEQFPKGCQNEVQKLKFNTSGQCEA PLVKTDIQASWYKDVEGCGIQCDNPLFTEDEHSD(MSE)HKLEHHHHHH MAVILHPNETIFNDFCKKSTTCEVLKYNTCLGSPLPYTHTSLILAEDSETQEEAFEKLAMWSGLRNAPRCWAVIQPLLCA VYMPKCENGKVELPSQHLCQATRNPCSIVERERGWPNFLKCENKEQFPKGCQNEVQKLKFNTSGQCEAPLVKTDIQASWY KDVEGCGIQCDNPLFTEDEHSDMHKLEHHHHHH A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ZEBRAFISH sample 7955 DANIO RERIO 469008 ESCHERICHIA COLI BL21(DE3) ROSETTA PLYSS PLASMID PET22B 1 2.03 38.86 NONE 7.0 100 MM HEPES PH7.0, PEG 6000 20%, 10 MM ZNCL2 repository Initial release Database references 1 0 2013-11-06 1 1 2013-11-13 CRYSTAL STRUCTURE OF THE SMOOTHENED CRD, NATIVE PDBE Y PDBE 2013-09-20 REL ZN ZINC ION NA SODIUM ION HOH water CONSTRUCT CONTAINS ADDITIONAL N-TERMINAL (MA) AND C- TERMINAL (KLEHHHHHH) RESIDUES. ZN 1158 2 ZN ZN 1158 A NA 1159 3 NA NA 1159 A NA 1158 3 NA NA 1158 B NA 1159 3 NA NA 1159 B HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2003 4 HOH HOH 2003 A HOH 2004 4 HOH HOH 2004 A HOH 2005 4 HOH HOH 2005 A HOH 2006 4 HOH HOH 2006 A HOH 2007 4 HOH HOH 2007 A HOH 2008 4 HOH HOH 2008 A HOH 2009 4 HOH HOH 2009 A HOH 2010 4 HOH HOH 2010 A HOH 2011 4 HOH HOH 2011 A HOH 2012 4 HOH HOH 2012 A HOH 2013 4 HOH HOH 2013 A HOH 2014 4 HOH HOH 2014 A HOH 2015 4 HOH HOH 2015 A HOH 2016 4 HOH HOH 2016 A HOH 2001 4 HOH HOH 2001 B HOH 2002 4 HOH HOH 2002 B HOH 2003 4 HOH HOH 2003 B HOH 2004 4 HOH HOH 2004 B HOH 2005 4 HOH HOH 2005 B HOH 2006 4 HOH HOH 2006 B HOH 2007 4 HOH HOH 2007 B HOH 2008 4 HOH HOH 2008 B HOH 2009 4 HOH HOH 2009 B HOH 2010 4 HOH HOH 2010 B HOH 2011 4 HOH HOH 2011 B HOH 2012 4 HOH HOH 2012 B n 1 27 A n 2 28 A n 3 29 A n 4 30 A n 5 31 A n 6 32 A n 7 33 A n 8 34 A n 9 35 A n 10 36 A n 11 37 A n 12 38 A n 13 39 A n 14 40 A PHE 41 n 15 PHE 41 A CYS 42 n 16 CYS 42 A LYS 43 n 17 LYS 43 A LYS 44 n 18 LYS 44 A SER 45 n 19 SER 45 A THR 46 n 20 THR 46 A THR 47 n 21 THR 47 A CYS 48 n 22 CYS 48 A GLU 49 n 23 GLU 49 A VAL 50 n 24 VAL 50 A LEU 51 n 25 LEU 51 A LYS 52 n 26 LYS 52 A TYR 53 n 27 TYR 53 A ASN 54 n 28 ASN 54 A THR 55 n 29 THR 55 A CYS 56 n 30 CYS 56 A LEU 57 n 31 LEU 57 A GLY 58 n 32 GLY 58 A SER 59 n 33 SER 59 A PRO 60 n 34 PRO 60 A LEU 61 n 35 LEU 61 A PRO 62 n 36 PRO 62 A TYR 63 n 37 TYR 63 A THR 64 n 38 THR 64 A HIS 65 n 39 HIS 65 A THR 66 n 40 THR 66 A SER 67 n 41 SER 67 A LEU 68 n 42 LEU 68 A ILE 69 n 43 ILE 69 A LEU 70 n 44 LEU 70 A ALA 71 n 45 ALA 71 A GLU 72 n 46 GLU 72 A ASP 73 n 47 ASP 73 A SER 74 n 48 SER 74 A GLU 75 n 49 GLU 75 A THR 76 n 50 THR 76 A GLN 77 n 51 GLN 77 A GLU 78 n 52 GLU 78 A GLU 79 n 53 GLU 79 A ALA 80 n 54 ALA 80 A PHE 81 n 55 PHE 81 A GLU 82 n 56 GLU 82 A LYS 83 n 57 LYS 83 A LEU 84 n 58 LEU 84 A ALA 85 n 59 ALA 85 A MSE 86 n 60 MSE 86 A TRP 87 n 61 TRP 87 A SER 88 n 62 SER 88 A GLY 89 n 63 GLY 89 A LEU 90 n 64 LEU 90 A ARG 91 n 65 ARG 91 A ASN 92 n 66 ASN 92 A ALA 93 n 67 ALA 93 A PRO 94 n 68 PRO 94 A ARG 95 n 69 ARG 95 A CYS 96 n 70 CYS 96 A TRP 97 n 71 TRP 97 A ALA 98 n 72 ALA 98 A VAL 99 n 73 VAL 99 A ILE 100 n 74 ILE 100 A GLN 101 n 75 GLN 101 A PRO 102 n 76 PRO 102 A LEU 103 n 77 LEU 103 A LEU 104 n 78 LEU 104 A CYS 105 n 79 CYS 105 A ALA 106 n 80 ALA 106 A VAL 107 n 81 VAL 107 A TYR 108 n 82 TYR 108 A MSE 109 n 83 MSE 109 A PRO 110 n 84 PRO 110 A LYS 111 n 85 LYS 111 A CYS 112 n 86 CYS 112 A GLU 113 n 87 GLU 113 A ASN 114 n 88 ASN 114 A GLY 115 n 89 GLY 115 A LYS 116 n 90 LYS 116 A VAL 117 n 91 VAL 117 A GLU 118 n 92 GLU 118 A LEU 119 n 93 LEU 119 A PRO 120 n 94 PRO 120 A SER 121 n 95 SER 121 A GLN 122 n 96 GLN 122 A HIS 123 n 97 HIS 123 A LEU 124 n 98 LEU 124 A CYS 125 n 99 CYS 125 A GLN 126 n 100 GLN 126 A ALA 127 n 101 ALA 127 A THR 128 n 102 THR 128 A ARG 129 n 103 ARG 129 A ASN 130 n 104 ASN 130 A PRO 131 n 105 PRO 131 A CYS 132 n 106 CYS 132 A SER 133 n 107 SER 133 A ILE 134 n 108 ILE 134 A VAL 135 n 109 VAL 135 A GLU 136 n 110 GLU 136 A ARG 137 n 111 ARG 137 A GLU 138 n 112 GLU 138 A ARG 139 n 113 ARG 139 A GLY 140 n 114 GLY 140 A TRP 141 n 115 TRP 141 A PRO 142 n 116 PRO 142 A ASN 143 n 117 ASN 143 A PHE 144 n 118 PHE 144 A LEU 145 n 119 LEU 145 A LYS 146 n 120 LYS 146 A CYS 147 n 121 CYS 147 A GLU 148 n 122 GLU 148 A ASN 149 n 123 ASN 149 A LYS 150 n 124 LYS 150 A GLU 151 n 125 GLU 151 A GLN 152 n 126 GLN 152 A PHE 153 n 127 PHE 153 A PRO 154 n 128 PRO 154 A LYS 155 n 129 LYS 155 A GLY 156 n 130 GLY 156 A CYS 157 n 131 CYS 157 A n 132 158 A n 133 159 A n 134 160 A n 135 161 A n 136 162 A n 137 163 A n 138 164 A n 139 165 A n 140 166 A n 141 167 A n 142 168 A n 143 169 A n 144 170 A n 145 171 A n 146 172 A n 147 173 A n 148 174 A n 149 175 A n 150 176 A n 151 177 A n 152 178 A n 153 179 A n 154 180 A n 155 181 A n 156 182 A n 157 183 A n 158 184 A n 159 185 A n 160 186 A n 161 187 A n 162 188 A n 163 189 A n 164 190 A n 165 191 A n 166 192 A n 167 193 A n 168 194 A n 169 195 A n 170 196 A n 171 197 A n 172 198 A n 173 199 A n 174 200 A n 175 201 A n 176 202 A n 177 203 A n 178 204 A n 179 205 A n 180 206 A n 181 207 A n 182 208 A n 183 209 A n 184 210 A n 185 211 A n 186 212 A n 187 213 A n 188 214 A n 189 215 A n 190 216 A n 191 217 A n 192 218 A n 193 219 A n 1 27 B n 2 28 B n 3 29 B n 4 30 B n 5 31 B n 6 32 B n 7 33 B n 8 34 B n 9 35 B n 10 36 B n 11 37 B n 12 38 B n 13 39 B n 14 40 B PHE 41 n 15 PHE 41 B CYS 42 n 16 CYS 42 B LYS 43 n 17 LYS 43 B LYS 44 n 18 LYS 44 B SER 45 n 19 SER 45 B THR 46 n 20 THR 46 B THR 47 n 21 THR 47 B CYS 48 n 22 CYS 48 B GLU 49 n 23 GLU 49 B VAL 50 n 24 VAL 50 B LEU 51 n 25 LEU 51 B LYS 52 n 26 LYS 52 B TYR 53 n 27 TYR 53 B ASN 54 n 28 ASN 54 B THR 55 n 29 THR 55 B CYS 56 n 30 CYS 56 B LEU 57 n 31 LEU 57 B GLY 58 n 32 GLY 58 B SER 59 n 33 SER 59 B PRO 60 n 34 PRO 60 B LEU 61 n 35 LEU 61 B PRO 62 n 36 PRO 62 B TYR 63 n 37 TYR 63 B THR 64 n 38 THR 64 B HIS 65 n 39 HIS 65 B THR 66 n 40 THR 66 B SER 67 n 41 SER 67 B LEU 68 n 42 LEU 68 B ILE 69 n 43 ILE 69 B LEU 70 n 44 LEU 70 B ALA 71 n 45 ALA 71 B GLU 72 n 46 GLU 72 B ASP 73 n 47 ASP 73 B SER 74 n 48 SER 74 B GLU 75 n 49 GLU 75 B THR 76 n 50 THR 76 B GLN 77 n 51 GLN 77 B GLU 78 n 52 GLU 78 B GLU 79 n 53 GLU 79 B ALA 80 n 54 ALA 80 B PHE 81 n 55 PHE 81 B GLU 82 n 56 GLU 82 B LYS 83 n 57 LYS 83 B LEU 84 n 58 LEU 84 B ALA 85 n 59 ALA 85 B MSE 86 n 60 MSE 86 B TRP 87 n 61 TRP 87 B SER 88 n 62 SER 88 B GLY 89 n 63 GLY 89 B LEU 90 n 64 LEU 90 B ARG 91 n 65 ARG 91 B ASN 92 n 66 ASN 92 B ALA 93 n 67 ALA 93 B PRO 94 n 68 PRO 94 B ARG 95 n 69 ARG 95 B CYS 96 n 70 CYS 96 B TRP 97 n 71 TRP 97 B ALA 98 n 72 ALA 98 B VAL 99 n 73 VAL 99 B ILE 100 n 74 ILE 100 B GLN 101 n 75 GLN 101 B PRO 102 n 76 PRO 102 B LEU 103 n 77 LEU 103 B LEU 104 n 78 LEU 104 B CYS 105 n 79 CYS 105 B ALA 106 n 80 ALA 106 B VAL 107 n 81 VAL 107 B TYR 108 n 82 TYR 108 B MSE 109 n 83 MSE 109 B PRO 110 n 84 PRO 110 B LYS 111 n 85 LYS 111 B CYS 112 n 86 CYS 112 B GLU 113 n 87 GLU 113 B ASN 114 n 88 ASN 114 B GLY 115 n 89 GLY 115 B LYS 116 n 90 LYS 116 B VAL 117 n 91 VAL 117 B GLU 118 n 92 GLU 118 B LEU 119 n 93 LEU 119 B PRO 120 n 94 PRO 120 B SER 121 n 95 SER 121 B GLN 122 n 96 GLN 122 B HIS 123 n 97 HIS 123 B LEU 124 n 98 LEU 124 B CYS 125 n 99 CYS 125 B GLN 126 n 100 GLN 126 B ALA 127 n 101 ALA 127 B THR 128 n 102 THR 128 B ARG 129 n 103 ARG 129 B ASN 130 n 104 ASN 130 B PRO 131 n 105 PRO 131 B CYS 132 n 106 CYS 132 B SER 133 n 107 SER 133 B ILE 134 n 108 ILE 134 B VAL 135 n 109 VAL 135 B GLU 136 n 110 GLU 136 B ARG 137 n 111 ARG 137 B GLU 138 n 112 GLU 138 B ARG 139 n 113 ARG 139 B GLY 140 n 114 GLY 140 B TRP 141 n 115 TRP 141 B PRO 142 n 116 PRO 142 B ASN 143 n 117 ASN 143 B PHE 144 n 118 PHE 144 B LEU 145 n 119 LEU 145 B LYS 146 n 120 LYS 146 B CYS 147 n 121 CYS 147 B GLU 148 n 122 GLU 148 B ASN 149 n 123 ASN 149 B LYS 150 n 124 LYS 150 B GLU 151 n 125 GLU 151 B GLN 152 n 126 GLN 152 B PHE 153 n 127 PHE 153 B PRO 154 n 128 PRO 154 B LYS 155 n 129 LYS 155 B GLY 156 n 130 GLY 156 B CYS 157 n 131 CYS 157 B n 132 158 B n 133 159 B n 134 160 B n 135 161 B n 136 162 B n 137 163 B n 138 164 B n 139 165 B n 140 166 B n 141 167 B n 142 168 B n 143 169 B n 144 170 B n 145 171 B n 146 172 B n 147 173 B n 148 174 B n 149 175 B n 150 176 B n 151 177 B n 152 178 B n 153 179 B n 154 180 B n 155 181 B n 156 182 B n 157 183 B n 158 184 B n 159 185 B n 160 186 B n 161 187 B n 162 188 B n 163 189 B n 164 190 B n 165 191 B n 166 192 B n 167 193 B n 168 194 B n 169 195 B n 170 196 B n 171 197 B n 172 198 B n 173 199 B n 174 200 B n 175 201 B n 176 202 B n 177 203 B n 178 204 B n 179 205 B n 180 206 B n 181 207 B n 182 208 B n 183 209 B n 184 210 B n 185 211 B n 186 212 B n 187 213 B n 188 214 B n 189 215 B n 190 216 B n 191 217 B n 192 218 B n 193 219 B 6.8851 -3.5463 -1.3107 2.8710 0.9248 2.8032 -0.1405 -1.0084 0.4325 0.1959 0.2322 -0.3023 -0.0080 0.4216 -0.0917 0.0263 -0.0178 -0.0047 0.2764 -0.0244 0.0669 refined -4.3680 -13.4760 12.1200 X-RAY DIFFRACTION 6.8099 -1.5670 -3.1488 1.5499 0.1649 7.8870 -0.0019 -0.6916 0.1727 0.1309 0.2384 -0.3751 0.5169 1.5680 -0.2364 0.1802 0.0936 -0.0096 0.4062 -0.1000 0.1544 refined -19.5020 -8.3320 36.6460 X-RAY DIFFRACTION A 41 A 157 X-RAY DIFFRACTION 1 B 41 B 157 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric B HIS 65 B NE2 HIS 39 8_545 A ZN 1158 C ZN ZN 1_555 B GLU 75 B OE2 GLU 49 6_545 89.9 B HIS 65 B NE2 HIS 39 8_545 A ZN 1158 C ZN ZN 1_555 A HIS 65 A NE2 HIS 39 1_555 111.6 B GLU 75 B OE2 GLU 49 6_545 A ZN 1158 C ZN ZN 1_555 A HIS 65 A NE2 HIS 39 1_555 88.3 B HIS 65 B NE2 HIS 39 8_545 A ZN 1158 C ZN ZN 1_555 B GLU 75 B OE1 GLU 49 6_545 127.7 B GLU 75 B OE2 GLU 49 6_545 A ZN 1158 C ZN ZN 1_555 B GLU 75 B OE1 GLU 49 6_545 67.3 A HIS 65 A NE2 HIS 39 1_555 A ZN 1158 C ZN ZN 1_555 B GLU 75 B OE1 GLU 49 6_545 113.9 A SER 74 A O SER 48 1_555 A NA 1159 D NA NA 1_555 A ALA 71 A O ALA 45 1_555 80.6 A SER 74 A O SER 48 1_555 A NA 1159 D NA NA 1_555 A LEU 68 A O LEU 42 1_555 110.3 A ALA 71 A O ALA 45 1_555 A NA 1159 D NA NA 1_555 A LEU 68 A O LEU 42 1_555 73.7 B SER 67 B O SER 41 1_555 B NA 1158 E NA NA 1_555 B VAL 107 B O VAL 81 1_555 134.9 B LEU 68 B O LEU 42 1_555 B NA 1159 F NA NA 1_555 B ALA 71 B O ALA 45 1_555 85.2 B LEU 68 B O LEU 42 1_555 B NA 1159 F NA NA 1_555 B HOH 2005 H O HOH 1_555 171.1 B ALA 71 B O ALA 45 1_555 B NA 1159 F NA NA 1_555 B HOH 2005 H O HOH 1_555 89.6 B LEU 68 B O LEU 42 1_555 B NA 1159 F NA NA 1_555 B HOH 2004 H O HOH 1_555 93.1 B ALA 71 B O ALA 45 1_555 B NA 1159 F NA NA 1_555 B HOH 2004 H O HOH 1_555 88.7 B HOH 2005 H O HOH 1_555 B NA 1159 F NA NA 1_555 B HOH 2004 H O HOH 1_555 79.6 B LEU 68 B O LEU 42 1_555 B NA 1159 F NA NA 1_555 B SER 74 B O SER 48 1_555 103.6 B ALA 71 B O ALA 45 1_555 B NA 1159 F NA NA 1_555 B SER 74 B O SER 48 1_555 84.9 B HOH 2005 H O HOH 1_555 B NA 1159 F NA NA 1_555 B SER 74 B O SER 48 1_555 83.1 B HOH 2004 H O HOH 1_555 B NA 1159 F NA NA 1_555 B SER 74 B O SER 48 1_555 161.5 A MSE 86 SELENOMETHIONINE A MSE 60 MET A MSE 109 SELENOMETHIONINE A MSE 83 MET B MSE 86 SELENOMETHIONINE B MSE 60 MET B MSE 109 SELENOMETHIONINE B MSE 83 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 44 A N LYS 18 A O VAL 117 A O VAL 91 A N LYS 116 A N LYS 90 A O GLU 113 A O GLU 87 A N GLU 49 A N GLU 23 A O THR 66 A O THR 40 A N CYS 56 A N CYS 30 A O SER 59 A O SER 33 B N LYS 44 B N LYS 18 B O VAL 117 B O VAL 91 B N LYS 116 B N LYS 90 B O GLU 113 B O GLU 87 B N GLU 49 B N GLU 23 B O THR 66 B O THR 40 B N CYS 56 B N CYS 30 B O SER 59 B O SER 33 1 A MSE 27 A MSE 1 1 Y 1 A ALA 28 A ALA 2 1 Y 1 A VAL 29 A VAL 3 1 Y 1 A ILE 30 A ILE 4 1 Y 1 A LEU 31 A LEU 5 1 Y 1 A HIS 32 A HIS 6 1 Y 1 A PRO 33 A PRO 7 1 Y 1 A ASN 34 A ASN 8 1 Y 1 A GLU 35 A GLU 9 1 Y 1 A THR 36 A THR 10 1 Y 1 A ILE 37 A ILE 11 1 Y 1 A PHE 38 A PHE 12 1 Y 1 A ASN 39 A ASN 13 1 Y 1 A ASP 40 A ASP 14 1 Y 1 A GLN 158 A GLN 132 1 Y 1 A ASN 159 A ASN 133 1 Y 1 A GLU 160 A GLU 134 1 Y 1 A VAL 161 A VAL 135 1 Y 1 A GLN 162 A GLN 136 1 Y 1 A LYS 163 A LYS 137 1 Y 1 A LEU 164 A LEU 138 1 Y 1 A LYS 165 A LYS 139 1 Y 1 A PHE 166 A PHE 140 1 Y 1 A ASN 167 A ASN 141 1 Y 1 A THR 168 A THR 142 1 Y 1 A SER 169 A SER 143 1 Y 1 A GLY 170 A GLY 144 1 Y 1 A GLN 171 A GLN 145 1 Y 1 A CYS 172 A CYS 146 1 Y 1 A GLU 173 A GLU 147 1 Y 1 A ALA 174 A ALA 148 1 Y 1 A PRO 175 A PRO 149 1 Y 1 A LEU 176 A LEU 150 1 Y 1 A VAL 177 A VAL 151 1 Y 1 A LYS 178 A LYS 152 1 Y 1 A THR 179 A THR 153 1 Y 1 A ASP 180 A ASP 154 1 Y 1 A ILE 181 A ILE 155 1 Y 1 A GLN 182 A GLN 156 1 Y 1 A ALA 183 A ALA 157 1 Y 1 A SER 184 A SER 158 1 Y 1 A TRP 185 A TRP 159 1 Y 1 A TYR 186 A TYR 160 1 Y 1 A LYS 187 A LYS 161 1 Y 1 A ASP 188 A ASP 162 1 Y 1 A VAL 189 A VAL 163 1 Y 1 A GLU 190 A GLU 164 1 Y 1 A GLY 191 A GLY 165 1 Y 1 A CYS 192 A CYS 166 1 Y 1 A GLY 193 A GLY 167 1 Y 1 A ILE 194 A ILE 168 1 Y 1 A GLN 195 A GLN 169 1 Y 1 A CYS 196 A CYS 170 1 Y 1 A ASP 197 A ASP 171 1 Y 1 A ASN 198 A ASN 172 1 Y 1 A PRO 199 A PRO 173 1 Y 1 A LEU 200 A LEU 174 1 Y 1 A PHE 201 A PHE 175 1 Y 1 A THR 202 A THR 176 1 Y 1 A GLU 203 A GLU 177 1 Y 1 A ASP 204 A ASP 178 1 Y 1 A GLU 205 A GLU 179 1 Y 1 A HIS 206 A HIS 180 1 Y 1 A SER 207 A SER 181 1 Y 1 A ASP 208 A ASP 182 1 Y 1 A MSE 209 A MSE 183 1 Y 1 A HIS 210 A HIS 184 1 Y 1 A LYS 211 A LYS 185 1 Y 1 A LEU 212 A LEU 186 1 Y 1 A GLU 213 A GLU 187 1 Y 1 A HIS 214 A HIS 188 1 Y 1 A HIS 215 A HIS 189 1 Y 1 A HIS 216 A HIS 190 1 Y 1 A HIS 217 A HIS 191 1 Y 1 A HIS 218 A HIS 192 1 Y 1 A HIS 219 A HIS 193 1 Y 1 B MSE 27 B MSE 1 1 Y 1 B ALA 28 B ALA 2 1 Y 1 B VAL 29 B VAL 3 1 Y 1 B ILE 30 B ILE 4 1 Y 1 B LEU 31 B LEU 5 1 Y 1 B HIS 32 B HIS 6 1 Y 1 B PRO 33 B PRO 7 1 Y 1 B ASN 34 B ASN 8 1 Y 1 B GLU 35 B GLU 9 1 Y 1 B THR 36 B THR 10 1 Y 1 B ILE 37 B ILE 11 1 Y 1 B PHE 38 B PHE 12 1 Y 1 B ASN 39 B ASN 13 1 Y 1 B ASP 40 B ASP 14 1 Y 1 B GLN 158 B GLN 132 1 Y 1 B ASN 159 B ASN 133 1 Y 1 B GLU 160 B GLU 134 1 Y 1 B VAL 161 B VAL 135 1 Y 1 B GLN 162 B GLN 136 1 Y 1 B LYS 163 B LYS 137 1 Y 1 B LEU 164 B LEU 138 1 Y 1 B LYS 165 B LYS 139 1 Y 1 B PHE 166 B PHE 140 1 Y 1 B ASN 167 B ASN 141 1 Y 1 B THR 168 B THR 142 1 Y 1 B SER 169 B SER 143 1 Y 1 B GLY 170 B GLY 144 1 Y 1 B GLN 171 B GLN 145 1 Y 1 B CYS 172 B CYS 146 1 Y 1 B GLU 173 B GLU 147 1 Y 1 B ALA 174 B ALA 148 1 Y 1 B PRO 175 B PRO 149 1 Y 1 B LEU 176 B LEU 150 1 Y 1 B VAL 177 B VAL 151 1 Y 1 B LYS 178 B LYS 152 1 Y 1 B THR 179 B THR 153 1 Y 1 B ASP 180 B ASP 154 1 Y 1 B ILE 181 B ILE 155 1 Y 1 B GLN 182 B GLN 156 1 Y 1 B ALA 183 B ALA 157 1 Y 1 B SER 184 B SER 158 1 Y 1 B TRP 185 B TRP 159 1 Y 1 B TYR 186 B TYR 160 1 Y 1 B LYS 187 B LYS 161 1 Y 1 B ASP 188 B ASP 162 1 Y 1 B VAL 189 B VAL 163 1 Y 1 B GLU 190 B GLU 164 1 Y 1 B GLY 191 B GLY 165 1 Y 1 B CYS 192 B CYS 166 1 Y 1 B GLY 193 B GLY 167 1 Y 1 B ILE 194 B ILE 168 1 Y 1 B GLN 195 B GLN 169 1 Y 1 B CYS 196 B CYS 170 1 Y 1 B ASP 197 B ASP 171 1 Y 1 B ASN 198 B ASN 172 1 Y 1 B PRO 199 B PRO 173 1 Y 1 B LEU 200 B LEU 174 1 Y 1 B PHE 201 B PHE 175 1 Y 1 B THR 202 B THR 176 1 Y 1 B GLU 203 B GLU 177 1 Y 1 B ASP 204 B ASP 178 1 Y 1 B GLU 205 B GLU 179 1 Y 1 B HIS 206 B HIS 180 1 Y 1 B SER 207 B SER 181 1 Y 1 B ASP 208 B ASP 182 1 Y 1 B MSE 209 B MSE 183 1 Y 1 B HIS 210 B HIS 184 1 Y 1 B LYS 211 B LYS 185 1 Y 1 B LEU 212 B LEU 186 1 Y 1 B GLU 213 B GLU 187 1 Y 1 B HIS 214 B HIS 188 1 Y 1 B HIS 215 B HIS 189 1 Y 1 B HIS 216 B HIS 190 1 Y 1 B HIS 217 B HIS 191 1 Y 1 B HIS 218 B HIS 192 1 Y 1 B HIS 219 B HIS 193 1 Y 1 A A O OE1 PHE GLN 144 152 2.15 1 B B GLY CYS 156 157 -149.27 1 3.60 0.50 120.30 123.90 A A A NE CZ NH1 ARG ARG ARG 129 129 129 N 1 -3.59 0.50 120.30 116.71 A A A NE CZ NH2 ARG ARG ARG 129 129 129 N 1 3.37 0.50 120.30 123.67 B B B NE CZ NH1 ARG ARG ARG 129 129 129 N 1 -3.84 0.50 120.30 116.46 B B B NE CZ NH2 ARG ARG ARG 129 129 129 N 1 6.61 1.10 114.20 120.81 B B B CA CB SG CYS CYS CYS 157 157 157 N 1 A A CB CG GLU GLU 113 113 0.117 0.019 1.517 1.634 N 1 A A CD OE2 GLU GLU 113 113 0.074 0.011 1.252 1.326 N 1 A B OE2 OE2 GLU GLU 113 79 1.78 1_555 6_545 1 B HIS 123 83.58 -26.12 56.727 -0.10 0.00 0.00 -0.10 0.00 0.19 0.922 0.883 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 0.28406 0.23586 0.23803 2.30 30.47 483 9576 4.8 98.85 22.170 0.257 RANDOM 1 THROUGHOUT SAD 0.533 0.296 0.80 0.80 1.20 NONE MAXIMUM LIKELIHOOD MASK 2.30 30.47 28 1886 4 0 1854 0.012 0.019 1910 0.005 0.020 1806 1.604 1.976 2594 1.258 3.010 4172 5.939 5.000 232 32.935 24.634 82 18.166 15.000 326 19.064 15.000 10 0.087 0.200 278 0.007 0.021 2116 0.004 0.020 414 1.654 2.728 934 1.654 2.725 933 2.587 4.077 1164 2.386 3.013 976 0.360 0.336 2.359 33 629 20 91.18 2.30 48.00 4C7A 10085 0.0 0.10 1 25.50 26.5 99.2 0.92 2.30 2.36 3.90 1 23.7 92.8 refinement REFMAC 5.7.0032 phasing PHENIX SMOOTHENED Crystal structure of the Smoothened CRD, selenomethionine-labeled 1 N N 1 N N 2 N N 3 N N 3 N N 3 N N 4 N N 4 N N A THR 76 A THR 50 HELX_P A SER 88 A SER 62 1 1 13 A GLY 89 A GLY 63 HELX_P A ASN 92 A ASN 66 5 2 4 A ALA 93 A ALA 67 HELX_P A MSE 109 A MSE 83 1 3 17 A SER 121 A SER 95 HELX_P A ALA 127 A ALA 101 1 4 7 A CYS 132 A CYS 106 HELX_P A ARG 139 A ARG 113 1 5 8 A PRO 142 A PRO 116 HELX_P A LYS 146 A LYS 120 5 6 5 B THR 76 B THR 50 HELX_P B SER 88 B SER 62 1 7 13 B GLY 89 B GLY 63 HELX_P B ASN 92 B ASN 66 5 8 4 B ALA 93 B ALA 67 HELX_P B MSE 109 B MSE 83 1 9 17 B CYS 125 B CYS 99 HELX_P B ASN 130 B ASN 104 1 10 6 B CYS 132 B CYS 106 HELX_P B ARG 139 B ARG 113 1 11 8 B PRO 142 B PRO 116 HELX_P B LYS 146 B LYS 120 5 12 5 disulf 2.018 A CYS 42 A SG CYS 16 1_555 A CYS 157 A SG CYS 131 1_555 disulf 2.036 A CYS 48 A SG CYS 22 1_555 A CYS 112 A SG CYS 86 1_555 disulf 2.060 A CYS 56 A SG CYS 30 1_555 A CYS 105 A SG CYS 79 1_555 disulf 2.047 A CYS 96 A SG CYS 70 1_555 A CYS 132 A SG CYS 106 1_555 disulf 2.040 A CYS 125 A SG CYS 99 1_555 A CYS 147 A SG CYS 121 1_555 disulf 2.066 B CYS 42 B SG CYS 16 1_555 B CYS 157 B SG CYS 131 1_555 disulf 2.051 B CYS 48 B SG CYS 22 1_555 B CYS 112 B SG CYS 86 1_555 disulf 2.026 B CYS 56 B SG CYS 30 1_555 B CYS 105 B SG CYS 79 1_555 disulf 2.052 B CYS 96 B SG CYS 70 1_555 B CYS 132 B SG CYS 106 1_555 disulf 2.076 B CYS 125 B SG CYS 99 1_555 B CYS 147 B SG CYS 121 1_555 covale 1.327 A ALA 85 A C ALA 59 1_555 A MSE 86 A N MSE 60 1_555 covale 1.315 A MSE 86 A C MSE 60 1_555 A TRP 87 A N TRP 61 1_555 covale 1.330 A TYR 108 A C TYR 82 1_555 A MSE 109 A N MSE 83 1_555 covale 1.347 A MSE 109 A C MSE 83 1_555 A PRO 110 A N PRO 84 1_555 metalc 2.008 A ZN 1158 C ZN ZN 1_555 B HIS 65 B NE2 HIS 39 8_545 metalc 2.061 A ZN 1158 C ZN ZN 1_555 B GLU 75 B OE2 GLU 49 6_545 metalc 2.162 A ZN 1158 C ZN ZN 1_555 A HIS 65 A NE2 HIS 39 1_555 metalc 1.865 A ZN 1158 C ZN ZN 1_555 B GLU 75 B OE1 GLU 49 6_545 metalc 2.136 A NA 1159 D NA NA 1_555 A SER 74 A O SER 48 1_555 metalc 2.552 A NA 1159 D NA NA 1_555 A ALA 71 A O ALA 45 1_555 metalc 2.606 A NA 1159 D NA NA 1_555 A LEU 68 A O LEU 42 1_555 covale 1.332 B ALA 85 B C ALA 59 1_555 B MSE 86 B N MSE 60 1_555 covale 1.340 B MSE 86 B C MSE 60 1_555 B TRP 87 B N TRP 61 1_555 covale 1.336 B TYR 108 B C TYR 82 1_555 B MSE 109 B N MSE 83 1_555 covale 1.343 B MSE 109 B C MSE 83 1_555 B PRO 110 B N PRO 84 1_555 metalc 2.729 B NA 1158 E NA NA 1_555 B SER 67 B O SER 41 1_555 metalc 2.520 B NA 1158 E NA NA 1_555 B VAL 107 B O VAL 81 1_555 metalc 2.326 B NA 1159 F NA NA 1_555 B LEU 68 B O LEU 42 1_555 metalc 2.211 B NA 1159 F NA NA 1_555 B ALA 71 B O ALA 45 1_555 metalc 2.335 B NA 1159 F NA NA 1_555 B HOH 2005 H O HOH 1_555 metalc 2.457 B NA 1159 F NA NA 1_555 B HOH 2004 H O HOH 1_555 metalc 2.237 B NA 1159 F NA NA 1_555 B SER 74 B O SER 48 1_555 SIGNALING PROTEIN SIGNALING PROTEIN A LYS 155 A LYS 129 1 A GLY 156 A GLY 130 -4.72 given -0.155400 0.927400 0.340200 0.948800 0.044290 0.312800 0.275100 0.371400 -0.886800 -12.10000 -6.13900 53.13000 Q90X26_DANRE UNP 1 Q90X26 28 210 4C7A 28 210 Q90X26 A 1 2 184 28 210 4C7A 28 210 Q90X26 B 1 2 184 1 expression tag MSE 27 4C7A A Q90X26 UNP 1 1 expression tag LYS 211 4C7A A Q90X26 UNP 185 1 expression tag LEU 212 4C7A A Q90X26 UNP 186 1 expression tag GLU 213 4C7A A Q90X26 UNP 187 1 expression tag HIS 214 4C7A A Q90X26 UNP 188 1 expression tag HIS 215 4C7A A Q90X26 UNP 189 1 expression tag HIS 216 4C7A A Q90X26 UNP 190 1 expression tag HIS 217 4C7A A Q90X26 UNP 191 1 expression tag HIS 218 4C7A A Q90X26 UNP 192 1 expression tag HIS 219 4C7A A Q90X26 UNP 193 2 expression tag MSE 27 4C7A B Q90X26 UNP 1 2 expression tag LYS 211 4C7A B Q90X26 UNP 185 2 expression tag LEU 212 4C7A B Q90X26 UNP 186 2 expression tag GLU 213 4C7A B Q90X26 UNP 187 2 expression tag HIS 214 4C7A B Q90X26 UNP 188 2 expression tag HIS 215 4C7A B Q90X26 UNP 189 2 expression tag HIS 216 4C7A B Q90X26 UNP 190 2 expression tag HIS 217 4C7A B Q90X26 UNP 191 2 expression tag HIS 218 4C7A B Q90X26 UNP 192 2 expression tag HIS 219 4C7A B Q90X26 UNP 193 3 2 2 3 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 43 A LYS 17 A SER 45 A SER 19 A LYS 116 A LYS 90 A GLU 118 A GLU 92 A CYS 112 A CYS 86 A GLU 113 A GLU 87 A GLU 49 A GLU 23 A VAL 50 A VAL 24 A HIS 65 A HIS 39 A THR 66 A THR 40 A THR 55 A THR 29 A CYS 56 A CYS 30 A SER 59 A SER 33 A PRO 60 A PRO 34 B LYS 43 B LYS 17 B SER 45 B SER 19 B LYS 116 B LYS 90 B GLU 118 B GLU 92 B CYS 112 B CYS 86 B GLU 113 B GLU 87 B GLU 49 B GLU 23 B VAL 50 B VAL 24 B HIS 65 B HIS 39 B THR 66 B THR 40 B THR 55 B THR 29 B CYS 56 B CYS 30 B SER 59 B SER 33 B PRO 60 B PRO 34 BINDING SITE FOR RESIDUE ZN A 1158 Software 4 BINDING SITE FOR RESIDUE NA B 1158 Software 7 BINDING SITE FOR RESIDUE NA B 1159 Software 5 BINDING SITE FOR RESIDUE NA A 1159 Software 3 A THR 64 A THR 38 4 1_555 A HIS 65 A HIS 39 4 1_555 B HIS 65 B HIS 39 4 8_545 B GLU 75 B GLU 49 4 6_545 B SER 67 B SER 41 7 1_555 B LEU 68 B LEU 42 7 1_555 B ILE 69 B ILE 43 7 1_555 B LEU 70 B LEU 44 7 1_555 B ALA 71 B ALA 45 7 1_555 B VAL 107 B VAL 81 7 1_555 B PRO 110 B PRO 84 7 1_555 B LEU 68 B LEU 42 5 1_555 B ALA 71 B ALA 45 5 1_555 B SER 74 B SER 48 5 1_555 B HOH 2004 H HOH 5 1_555 B HOH 2005 H HOH 5 1_555 A LEU 68 A LEU 42 3 1_555 A ALA 71 A ALA 45 3 1_555 A SER 74 A SER 48 3 1_555 96 P 43 21 2