0.026028
0.015027
0.000000
0.000000
0.030055
0.000000
0.000000
0.000000
0.007576
0.00000
0.00000
0.00000
Otero, J.M.
Llamas-Saiz, A.L.
Maneiro, M.
Peon, A.
Sedes, A.
Lamb, H.
Hawkins, A.R.
Gonzalez-Bello, C.
van Raaij, M.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
38.420
38.420
132.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
Y
235
N
C
Y
236
N
C
Y
237
N
C
Y
238
N
C
Y
239
N
C
Y
240
N
C
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
O
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
R
C
N
289
N
O
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
N
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
N
339
N
O
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
Y
229
N
doub
Y
230
N
sing
Y
231
N
sing
N
232
N
sing
Y
233
N
doub
N
234
N
sing
Y
235
N
doub
N
236
N
sing
Y
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
doub
N
310
N
sing
Y
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
Y
328
N
sing
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
To be Published
0353
Investigation of the Dehydratation Mechanism Catalyzed by the Type II Dehydroquinase
10.2210/pdb4ckz/pdb
pdb_00004ckz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
PLANE-ELLIPSOIDAL MIRRORS (SI, RH, IR)
PIXEL
2013-10-08
DECTRIS PILATUS 6M
CHANNEL-CUT DOUBLE CRYSTAL MONOCHROMATOR
SINGLE WAVELENGTH
M
x-ray
1
0.97922
1.0
XALOC
ALBA
0.97922
SYNCHROTRON
ALBA BEAMLINE XALOC
15675.753
3-DEHYDROQUINATE DEHYDRATASE
4.2.1.10
YES
2
man
polymer
18.015
water
22
nat
water
3-DEHYDROQUINASE, TYPE II DHQASE
no
no
SELIVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLT
HTSVALRNACAELSAPLIEVHISNVHAREEFRRHSYLSPIATGVIVGLGIQGYLLALRYLAEHVGT
SELIVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLT
HTSVALRNACAELSAPLIEVHISNVHAREEFRRHSYLSPIATGVIVGLGIQGYLLALRYLAEHVGT
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
27294
1773
MYCOBACTERIUM TUBERCULOSIS
511693
ESCHERICHIA COLI
BL21
SK3430
PLASMID
PKK233-2
1
2.1
40.7
NONE
5.4
32% PEG 4000, 0.1 M NA CITRATE PH 5.4
citation_author
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
repository
Initial release
Database references
Structure summary
Database references
Data collection
Database references
Other
Refinement description
1
0
2015-03-25
1
1
2016-06-15
1
2
2018-01-24
1
3
2023-12-20
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS TYPE II DEHYDROQUINASE N12S MUTANT (CRYSTAL FORM 1)
STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS TYPE II DEHYDROQUINASE N12S MUTANT (CRYSTAL FORM 2)
STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS TYPE II DEHYDROQUINASE INHIBITED BY A 3-DEHYDROQUINIC ACID DERIVATIVE
STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS TYPE II DEHYDROQUINASE INHIBITED BY A 3-DEHYDROQUINIC ACID DERIVATIVE
STRUCTURE OF SALMONELLA TYPHI TYPE I DEHYDROQUINASE IRREVERSIBLE INHIBITED WITH A 1,3,4- TRIHYDROXYCICLOHEXANE-1-CARBOXYLIC ACID DERIVATIVE
HELIX
DETERMINATION METHOD: AUTHOR PROVIDED.
SHEET
DETERMINATION METHOD: AUTHOR PROVIDED.
PDBE
Y
PDBE
2014-01-10
REL
REL
1
A
O
HOH
2002
6.57
HOH
water
2Y71
PDB ENTRY 2Y71
PDB
experimental model
HOH
2001
2
HOH
HOH
2001
A
HOH
2002
2
HOH
HOH
2002
A
HOH
2003
2
HOH
HOH
2003
A
HOH
2004
2
HOH
HOH
2004
A
HOH
2005
2
HOH
HOH
2005
A
HOH
2006
2
HOH
HOH
2006
A
HOH
2007
2
HOH
HOH
2007
A
HOH
2008
2
HOH
HOH
2008
A
HOH
2009
2
HOH
HOH
2009
A
HOH
2010
2
HOH
HOH
2010
A
HOH
2011
2
HOH
HOH
2011
A
HOH
2012
2
HOH
HOH
2012
A
HOH
2001
2
HOH
HOH
2001
B
HOH
2002
2
HOH
HOH
2002
B
HOH
2003
2
HOH
HOH
2003
B
HOH
2004
2
HOH
HOH
2004
B
HOH
2005
2
HOH
HOH
2005
B
HOH
2006
2
HOH
HOH
2006
B
HOH
2007
2
HOH
HOH
2007
B
HOH
2008
2
HOH
HOH
2008
B
HOH
2009
2
HOH
HOH
2009
B
HOH
2010
2
HOH
HOH
2010
B
n
1
1
A
n
2
2
A
LEU
3
n
3
LEU
3
A
ILE
4
n
4
ILE
4
A
VAL
5
n
5
VAL
5
A
ASN
6
n
6
ASN
6
A
VAL
7
n
7
VAL
7
A
ILE
8
n
8
ILE
8
A
ASN
9
n
9
ASN
9
A
GLY
10
n
10
GLY
10
A
PRO
11
n
11
PRO
11
A
ASN
12
n
12
ASN
12
A
LEU
13
n
13
LEU
13
A
GLY
14
n
14
GLY
14
A
ARG
15
n
15
ARG
15
A
LEU
16
n
16
LEU
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
n
24
24
A
n
25
25
A
GLY
26
n
26
GLY
26
A
THR
27
n
27
THR
27
A
THR
28
n
28
THR
28
A
HIS
29
n
29
HIS
29
A
ASP
30
n
30
ASP
30
A
GLU
31
n
31
GLU
31
A
LEU
32
n
32
LEU
32
A
VAL
33
n
33
VAL
33
A
ALA
34
n
34
ALA
34
A
LEU
35
n
35
LEU
35
A
ILE
36
n
36
ILE
36
A
GLU
37
n
37
GLU
37
A
ARG
38
n
38
ARG
38
A
GLU
39
n
39
GLU
39
A
ALA
40
n
40
ALA
40
A
ALA
41
n
41
ALA
41
A
GLU
42
n
42
GLU
42
A
LEU
43
n
43
LEU
43
A
GLY
44
n
44
GLY
44
A
LEU
45
n
45
LEU
45
A
LYS
46
n
46
LYS
46
A
ALA
47
n
47
ALA
47
A
VAL
48
n
48
VAL
48
A
VAL
49
n
49
VAL
49
A
ARG
50
n
50
ARG
50
A
GLN
51
n
51
GLN
51
A
SER
52
n
52
SER
52
A
ASP
53
n
53
ASP
53
A
SER
54
n
54
SER
54
A
GLU
55
n
55
GLU
55
A
ALA
56
n
56
ALA
56
A
GLN
57
n
57
GLN
57
A
LEU
58
n
58
LEU
58
A
LEU
59
n
59
LEU
59
A
ASP
60
n
60
ASP
60
A
TRP
61
n
61
TRP
61
A
ILE
62
n
62
ILE
62
A
HIS
63
n
63
HIS
63
A
GLN
64
n
64
GLN
64
A
ALA
65
n
65
ALA
65
A
ALA
66
n
66
ALA
66
A
ASP
67
n
67
ASP
67
A
ALA
68
n
68
ALA
68
A
ALA
69
n
69
ALA
69
A
GLU
70
n
70
GLU
70
A
PRO
71
n
71
PRO
71
A
VAL
72
n
72
VAL
72
A
ILE
73
n
73
ILE
73
A
LEU
74
n
74
LEU
74
A
ASN
75
n
75
ASN
75
A
ALA
76
n
76
ALA
76
A
GLY
77
n
77
GLY
77
A
GLY
78
n
78
GLY
78
A
LEU
79
n
79
LEU
79
A
THR
80
n
80
THR
80
A
HIS
81
n
81
HIS
81
A
THR
82
n
82
THR
82
A
SER
83
n
83
SER
83
A
VAL
84
n
84
VAL
84
A
ALA
85
n
85
ALA
85
A
LEU
86
n
86
LEU
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
ALA
89
n
89
ALA
89
A
CYS
90
n
90
CYS
90
A
ALA
91
n
91
ALA
91
A
GLU
92
n
92
GLU
92
A
LEU
93
n
93
LEU
93
A
SER
94
n
94
SER
94
A
ALA
95
n
95
ALA
95
A
PRO
96
n
96
PRO
96
A
LEU
97
n
97
LEU
97
A
ILE
98
n
98
ILE
98
A
GLU
99
n
99
GLU
99
A
VAL
100
n
100
VAL
100
A
HIS
101
n
101
HIS
101
A
ILE
102
n
102
ILE
102
A
SER
103
n
103
SER
103
A
ASN
104
n
104
ASN
104
A
VAL
105
n
105
VAL
105
A
HIS
106
n
106
HIS
106
A
ALA
107
n
107
ALA
107
A
ARG
108
n
108
ARG
108
A
n
109
109
A
n
110
110
A
n
111
111
A
n
112
112
A
n
113
113
A
n
114
114
A
SER
115
n
115
SER
115
A
TYR
116
n
116
TYR
116
A
LEU
117
n
117
LEU
117
A
SER
118
n
118
SER
118
A
PRO
119
n
119
PRO
119
A
ILE
120
n
120
ILE
120
A
ALA
121
n
121
ALA
121
A
THR
122
n
122
THR
122
A
GLY
123
n
123
GLY
123
A
VAL
124
n
124
VAL
124
A
ILE
125
n
125
ILE
125
A
VAL
126
n
126
VAL
126
A
GLY
127
n
127
GLY
127
A
LEU
128
n
128
LEU
128
A
GLY
129
n
129
GLY
129
A
ILE
130
n
130
ILE
130
A
GLN
131
n
131
GLN
131
A
GLY
132
n
132
GLY
132
A
TYR
133
n
133
TYR
133
A
LEU
134
n
134
LEU
134
A
LEU
135
n
135
LEU
135
A
ALA
136
n
136
ALA
136
A
LEU
137
n
137
LEU
137
A
ARG
138
n
138
ARG
138
A
TYR
139
n
139
TYR
139
A
LEU
140
n
140
LEU
140
A
ALA
141
n
141
ALA
141
A
GLU
142
n
142
GLU
142
A
HIS
143
n
143
HIS
143
A
n
144
144
A
n
145
145
A
n
146
146
A
n
1
1
B
n
2
2
B
LEU
3
n
3
LEU
3
B
ILE
4
n
4
ILE
4
B
VAL
5
n
5
VAL
5
B
ASN
6
n
6
ASN
6
B
VAL
7
n
7
VAL
7
B
ILE
8
n
8
ILE
8
B
ASN
9
n
9
ASN
9
B
GLY
10
n
10
GLY
10
B
PRO
11
n
11
PRO
11
B
ASN
12
n
12
ASN
12
B
LEU
13
n
13
LEU
13
B
GLY
14
n
14
GLY
14
B
ARG
15
n
15
ARG
15
B
LEU
16
n
16
LEU
16
B
GLY
17
n
17
GLY
17
B
n
18
18
B
n
19
19
B
n
20
20
B
n
21
21
B
n
22
22
B
n
23
23
B
TYR
24
n
24
TYR
24
B
GLY
25
n
25
GLY
25
B
GLY
26
n
26
GLY
26
B
THR
27
n
27
THR
27
B
THR
28
n
28
THR
28
B
HIS
29
n
29
HIS
29
B
ASP
30
n
30
ASP
30
B
GLU
31
n
31
GLU
31
B
LEU
32
n
32
LEU
32
B
VAL
33
n
33
VAL
33
B
ALA
34
n
34
ALA
34
B
LEU
35
n
35
LEU
35
B
ILE
36
n
36
ILE
36
B
GLU
37
n
37
GLU
37
B
ARG
38
n
38
ARG
38
B
GLU
39
n
39
GLU
39
B
ALA
40
n
40
ALA
40
B
ALA
41
n
41
ALA
41
B
GLU
42
n
42
GLU
42
B
LEU
43
n
43
LEU
43
B
GLY
44
n
44
GLY
44
B
LEU
45
n
45
LEU
45
B
LYS
46
n
46
LYS
46
B
ALA
47
n
47
ALA
47
B
VAL
48
n
48
VAL
48
B
VAL
49
n
49
VAL
49
B
ARG
50
n
50
ARG
50
B
GLN
51
n
51
GLN
51
B
SER
52
n
52
SER
52
B
ASP
53
n
53
ASP
53
B
SER
54
n
54
SER
54
B
GLU
55
n
55
GLU
55
B
ALA
56
n
56
ALA
56
B
GLN
57
n
57
GLN
57
B
LEU
58
n
58
LEU
58
B
LEU
59
n
59
LEU
59
B
ASP
60
n
60
ASP
60
B
TRP
61
n
61
TRP
61
B
ILE
62
n
62
ILE
62
B
HIS
63
n
63
HIS
63
B
GLN
64
n
64
GLN
64
B
ALA
65
n
65
ALA
65
B
ALA
66
n
66
ALA
66
B
ASP
67
n
67
ASP
67
B
ALA
68
n
68
ALA
68
B
ALA
69
n
69
ALA
69
B
GLU
70
n
70
GLU
70
B
PRO
71
n
71
PRO
71
B
VAL
72
n
72
VAL
72
B
ILE
73
n
73
ILE
73
B
LEU
74
n
74
LEU
74
B
ASN
75
n
75
ASN
75
B
ALA
76
n
76
ALA
76
B
GLY
77
n
77
GLY
77
B
GLY
78
n
78
GLY
78
B
LEU
79
n
79
LEU
79
B
THR
80
n
80
THR
80
B
HIS
81
n
81
HIS
81
B
THR
82
n
82
THR
82
B
SER
83
n
83
SER
83
B
VAL
84
n
84
VAL
84
B
ALA
85
n
85
ALA
85
B
LEU
86
n
86
LEU
86
B
ARG
87
n
87
ARG
87
B
ASN
88
n
88
ASN
88
B
ALA
89
n
89
ALA
89
B
CYS
90
n
90
CYS
90
B
ALA
91
n
91
ALA
91
B
GLU
92
n
92
GLU
92
B
LEU
93
n
93
LEU
93
B
SER
94
n
94
SER
94
B
ALA
95
n
95
ALA
95
B
PRO
96
n
96
PRO
96
B
LEU
97
n
97
LEU
97
B
ILE
98
n
98
ILE
98
B
GLU
99
n
99
GLU
99
B
VAL
100
n
100
VAL
100
B
HIS
101
n
101
HIS
101
B
ILE
102
n
102
ILE
102
B
SER
103
n
103
SER
103
B
ASN
104
n
104
ASN
104
B
VAL
105
n
105
VAL
105
B
HIS
106
n
106
HIS
106
B
n
107
107
B
n
108
108
B
n
109
109
B
n
110
110
B
n
111
111
B
ARG
112
n
112
ARG
112
B
ARG
113
n
113
ARG
113
B
HIS
114
n
114
HIS
114
B
SER
115
n
115
SER
115
B
TYR
116
n
116
TYR
116
B
LEU
117
n
117
LEU
117
B
SER
118
n
118
SER
118
B
PRO
119
n
119
PRO
119
B
ILE
120
n
120
ILE
120
B
ALA
121
n
121
ALA
121
B
THR
122
n
122
THR
122
B
GLY
123
n
123
GLY
123
B
VAL
124
n
124
VAL
124
B
ILE
125
n
125
ILE
125
B
VAL
126
n
126
VAL
126
B
GLY
127
n
127
GLY
127
B
LEU
128
n
128
LEU
128
B
GLY
129
n
129
GLY
129
B
ILE
130
n
130
ILE
130
B
GLN
131
n
131
GLN
131
B
GLY
132
n
132
GLY
132
B
TYR
133
n
133
TYR
133
B
LEU
134
n
134
LEU
134
B
LEU
135
n
135
LEU
135
B
ALA
136
n
136
ALA
136
B
LEU
137
n
137
LEU
137
B
ARG
138
n
138
ARG
138
B
TYR
139
n
139
TYR
139
B
LEU
140
n
140
LEU
140
B
ALA
141
n
141
ALA
141
B
GLU
142
n
142
GLU
142
B
HIS
143
n
143
HIS
143
B
n
144
144
B
n
145
145
B
n
146
146
B
1
0.545
2
0.455
author_and_software_defined_assembly
PISA
2
dimeric
1800
-6.5
10940
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
48
A
N
VAL
48
A
O
VAL
5
A
O
VAL
5
A
N
ILE
8
A
N
ILE
8
A
O
ILE
73
A
O
ILE
73
A
N
LEU
74
A
N
LEU
74
A
O
ILE
98
A
O
ILE
98
A
N
GLU
99
A
N
GLU
99
A
O
GLY
123
A
O
GLY
123
A
N
VAL
126
A
N
VAL
126
B
O
VAL
124
B
O
VAL
124
B
N
ILE
125
B
N
ILE
125
B
O
GLU
99
B
O
GLU
99
B
N
ILE
98
B
N
ILE
98
B
O
VAL
72
B
O
VAL
72
B
N
ILE
73
B
N
ILE
73
B
O
ASN
6
B
O
ASN
6
B
N
VAL
5
B
N
VAL
5
B
O
LYS
46
B
O
LYS
46
1
A
SER
1
A
SER
1
1
Y
1
A
GLU
2
A
GLU
2
1
Y
1
A
GLY
17
A
GLY
17
1
Y
1
A
ARG
18
A
ARG
18
1
Y
1
A
ARG
19
A
ARG
19
1
Y
1
A
GLU
20
A
GLU
20
1
Y
1
A
PRO
21
A
PRO
21
1
Y
1
A
ALA
22
A
ALA
22
1
Y
1
A
VAL
23
A
VAL
23
1
Y
1
A
TYR
24
A
TYR
24
1
Y
1
A
GLY
25
A
GLY
25
1
Y
1
A
GLU
109
A
GLU
109
1
Y
1
A
GLU
110
A
GLU
110
1
Y
1
A
PHE
111
A
PHE
111
1
Y
1
A
ARG
112
A
ARG
112
1
Y
1
A
ARG
113
A
ARG
113
1
Y
1
A
HIS
114
A
HIS
114
1
Y
1
A
VAL
144
A
VAL
144
1
Y
1
A
GLY
145
A
GLY
145
1
Y
1
A
THR
146
A
THR
146
1
Y
1
B
SER
1
B
SER
1
1
Y
1
B
GLU
2
B
GLU
2
1
Y
1
B
ARG
18
B
ARG
18
1
Y
1
B
ARG
19
B
ARG
19
1
Y
1
B
GLU
20
B
GLU
20
1
Y
1
B
PRO
21
B
PRO
21
1
Y
1
B
ALA
22
B
ALA
22
1
Y
1
B
VAL
23
B
VAL
23
1
Y
1
B
ALA
107
B
ALA
107
1
Y
1
B
ARG
108
B
ARG
108
1
Y
1
B
GLU
109
B
GLU
109
1
Y
1
B
GLU
110
B
GLU
110
1
Y
1
B
PHE
111
B
PHE
111
1
Y
1
B
VAL
144
B
VAL
144
1
Y
1
B
GLY
145
B
GLY
145
1
Y
1
B
THR
146
B
THR
146
1
Y
1
A
A
O
OG1
ALA
THR
76
80
2.00
1
B
B
O
OE1
ARG
GLU
38
42
2.13
1
A
PRO
11
-39.76
135.56
1
A
ALA
69
72.58
40.37
1
A
THR
82
-144.41
-18.58
1
A
PRO
96
-39.61
142.28
1
B
ASN
12
81.59
-5.90
33.032
-0.07
0.00
0.00
-0.07
0.00
0.14
0.891
0.722
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES ARE REFINED INDIVIDUALLY GAP BY DISORDERED REGION BETWEEN LEU-16 AND GLY-26, ARG- 108 AND SER-115 IN CHAIN A, GLY-17 AND TYR-24, HIS-106 AND ARG-112 IN CHAIN B.
0.33557
0.23734
0.24169
2.52
44.00
272
5752
4.5
81.48
16.307
0.351
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.113
0.80
0.80
1.20
PDB ENTRY 2Y71
MAXIMUM LIKELIHOOD
MASK
2.52
44.00
22
1938
0
0
1916
0.006
0.019
1942
0.001
0.020
1934
1.081
1.965
2644
0.684
3.000
4407
6.614
5.000
250
35.569
24.074
81
17.473
15.000
309
12.118
15.000
13
0.056
0.200
326
0.005
0.020
2201
0.001
0.020
426
0.202
0.200
497
0.167
0.200
2028
0.164
0.200
932
0.082
0.200
1298
0.198
0.200
41
0.000
0.200
1
0.258
0.200
25
0.154
0.200
51
0.149
0.200
6
0.935
3.364
1942
0.135
3.312
1934
1.675
5.015
2644
4.700
33.511
3719
0.720
4.961
4407
0.377
0.288
2.812
33
694
5
34.83
51.8
2.51
44.00
4CKZ
6028
-3.0
0.16
1
13.30
8.2
80.7
0.44
2.51
2.65
6.40
1
8.0
20.4
refinement
REFMAC
5.7.0029
data reduction
XDS
data scaling
XSCALE
phasing
MOLREP
Structure of the Mycobacterium tuberculosis Type II Dehydroquinase D88N mutant
1
N
N
1
N
N
2
N
N
2
N
N
A
ASN
12
A
ASN
12
HELX_P
A
LEU
16
A
LEU
16
5
1
5
A
ASP
30
A
ASP
30
HELX_P
A
GLY
44
A
GLY
44
1
2
15
A
SER
54
A
SER
54
HELX_P
A
ALA
69
A
ALA
69
1
3
16
A
ALA
76
A
ALA
76
HELX_P
A
THR
82
A
THR
82
5
4
7
A
SER
83
A
SER
83
HELX_P
A
GLU
92
A
GLU
92
1
5
10
A
ASN
104
A
ASN
104
HELX_P
A
ARG
108
A
ARG
108
5
6
5
A
LEU
117
A
LEU
117
HELX_P
A
ALA
121
A
ALA
121
5
7
5
A
ILE
130
A
ILE
130
HELX_P
A
HIS
143
A
HIS
143
1
8
14
B
ASN
12
B
ASN
12
HELX_P
B
LEU
16
B
LEU
16
5
9
5
B
THR
28
B
THR
28
HELX_P
B
GLY
44
B
GLY
44
1
10
17
B
SER
54
B
SER
54
HELX_P
B
ALA
69
B
ALA
69
1
11
16
B
ALA
76
B
ALA
76
HELX_P
B
THR
82
B
THR
82
5
12
7
B
SER
83
B
SER
83
HELX_P
B
GLU
92
B
GLU
92
1
13
10
B
LEU
117
B
LEU
117
HELX_P
B
ALA
121
B
ALA
121
5
14
5
B
ILE
130
B
ILE
130
HELX_P
B
GLU
142
B
GLU
142
1
15
13
LYASE
BACTERIAL PROTEINS, TYPE 2 DEHYDROQUINASE, LYASE, INHIBITOR, PROTEIN BINDING, PROTEIN STRUCTURE, SHIKIMIS ACID PATHWAY, SUBSTRATE SPECIFICITY
A
HIS
29
A
HIS
29
1
A
ASP
30
A
ASP
30
19.39
AROQ_MYCTU
UNP
1
P0A4Z6
2
147
4CKZ
1
146
P0A4Z6
A
1
1
146
2
147
4CKZ
1
146
P0A4Z6
B
1
1
146
1
ASP
engineered mutation
ASN
88
4CKZ
A
P0A4Z6
UNP
89
88
2
ASP
engineered mutation
ASN
88
4CKZ
B
P0A4Z6
UNP
89
88
10
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
A
LYS
46
A
LYS
46
A
GLN
51
A
GLN
51
A
ILE
4
A
ILE
4
A
ASN
9
A
ASN
9
A
VAL
72
A
VAL
72
A
ASN
75
A
ASN
75
A
LEU
97
A
LEU
97
A
HIS
101
A
HIS
101
A
GLY
123
A
GLY
123
A
VAL
126
A
VAL
126
B
GLY
123
B
GLY
123
B
VAL
126
B
VAL
126
B
LEU
97
B
LEU
97
B
HIS
101
B
HIS
101
B
VAL
72
B
VAL
72
B
ASN
75
B
ASN
75
B
ILE
4
B
ILE
4
B
ASN
9
B
ASN
9
B
LYS
46
B
LYS
46
B
GLN
51
B
GLN
51
144
P 31