0.014079
0.000000
0.007056
0.000000
0.017584
0.000000
0.000000
0.000000
0.014695
0.00000
0.00000
0.00000
Kutter, S.
Wilson, C.
Cruz, L.
Agafonov, R.V.
Hoemberger, M.S.
Zorba, A.
Kern, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
116.62
90.00
71.029
56.869
76.118
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C29 H31 N7 O
493.603
4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE
STI-571; IMATINIB
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
N
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
N
Y
314
N
C
Y
315
N
N
N
316
N
N
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
N
323
N
N
N
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
N
331
N
C
N
332
N
N
N
333
N
C
N
334
N
C
N
335
N
N
N
336
N
C
N
337
N
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
R
C
N
377
N
O
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
N
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
N
427
N
O
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
N
N
441
S
C
N
442
N
C
N
443
N
O
N
444
N
C
N
445
N
C
N
446
N
C
N
447
N
O
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
Y
290
N
doub
Y
291
N
sing
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
doub
Y
296
N
sing
Y
297
N
sing
N
298
N
sing
Y
299
N
doub
N
300
N
sing
Y
301
N
doub
Y
302
N
sing
Y
303
N
sing
N
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
sing
Y
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
Y
312
N
doub
Y
313
N
sing
Y
314
N
sing
N
315
N
sing
Y
316
N
doub
N
317
N
sing
Y
318
N
sing
N
319
N
sing
Y
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
Y
327
N
doub
Y
328
N
sing
Y
329
N
sing
N
330
N
sing
Y
331
N
doub
N
332
N
sing
Y
333
N
sing
N
334
N
sing
Y
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
Y
389
N
doub
Y
390
N
sing
Y
391
N
sing
N
392
N
sing
Y
393
N
doub
Y
394
N
sing
Y
395
N
sing
N
396
N
sing
Y
397
N
sing
Y
398
N
doub
N
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
Y
417
N
doub
Y
418
N
sing
Y
419
N
sing
N
420
N
sing
Y
421
N
doub
N
422
N
sing
Y
423
N
doub
N
424
N
sing
Y
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
doub
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
US
Science
SCIEAS
0038
0036-8075
347
882
10.1126/SCIENCE.AAA1823
25700521
Kinase Dynamics. Using Ancient Protein Kinases to Unravel a Modern Cancer Drug'S Mechanism.
2015
10.2210/pdb4csv/pdb
pdb_00004csv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2014-01-29
ADSC QUANTUM 315
DOUBLE CRYSTAL, SI(111)
SINGLE WAVELENGTH
M
x-ray
1
0.999956
1.0
8.2.2
ALS
0.999956
SYNCHROTRON
ALS BEAMLINE 8.2.2
31256.531
SRC-ABL TYROSINE KINASE ANCESTOR
2.7.10.2
KINASE DOMAIN
1
man
polymer
493.603
4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE
1
syn
non-polymer
18.015
water
56
nat
water
no
no
GPHDKWEIPRSEITLERKLGSGQFGEVYEGKWRNYNIEVAVKTLKEGTMSVEEFLQEAQIMKKLKHPNLVQLYGVCTKEP
PIYIITEYMSHGSLLDYLRDCEGHTVNAQALLDMAAQVASGMAYLESQNFIHRDLAARNCLVGENNVVKVADFGLARLIN
EDEYTARAGAKFPIKWTAPEAISYNRFSIKSDVWAFGILLWEIFTYGQVPYPGMSGSEVIEQVERGYRMPRPQGCPEEIY
ELMLQCWNKSPEERPTFAETLHALETMFLPETGGG
GPHDKWEIPRSEITLERKLGSGQFGEVYEGKWRNYNIEVAVKTLKEGTMSVEEFLQEAQIMKKLKHPNLVQLYGVCTKEP
PIYIITEYMSHGSLLDYLRDCEGHTVNAQALLDMAAQVASGMAYLESQNFIHRDLAARNCLVGENNVVKVADFGLARLIN
EDEYTARAGAKFPIKWTAPEAISYNRFSIKSDVWAFGILLWEIFTYGQVPYPGMSGSEVIEQVERGYRMPRPQGCPEEIY
ELMLQCWNKSPEERPTFAETLHALETMFLPETGGG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
32630
SYNTHETIC CONSTRUCT
469008
ESCHERICHIA COLI
BL21(DE3)
PLASMID
PETM-41
1
2.17
43.42
NONE
VAPOR DIFFUSION, HANGING DROP
4.6
10 MG/ML OF LYSINE MODIFIED (ETHYLATED) PROTEIN IN 30 MM TRIS PH 8.0, 500 MM NACL, 1 MM GLEEVEC, MIXED 1:1 WITH 200 MM AMMONIUM ACETATE, 100 MM SODIUM ACETATE TRIHYDRATE PH 4.6 AND 30% PEG 4000, HANGING DROP, MICRO SEEDING WITH INITIAL CRYSTALS FROM A 96 WELL PLATE SCREEN, INITIAL CRYSTALS GREW ON A DUST PARTICLE, 18C
291
database_PDB_rev
database_PDB_rev_record
exptl_crystal_grow
pdbx_database_proc
pdbx_database_status
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_site
repository
Initial release
Data collection
Experimental preparation
Other
Data collection
Database references
Derived calculations
Other
Refinement description
Structure summary
1
0
2015-03-04
1
1
2019-05-08
1
2
2023-12-20
_exptl_crystal_grow.method
_exptl_crystal_grow.temp
_pdbx_database_status.recvd_author_approval
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBE
Y
PDBE
2014-03-10
REL
REL
1
A
O
HOH
1054
5.84
STI
4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE
HOH
water
4CDS
PDB ENTRY 4CDS
PDB
experimental model
STI
1265
2
STI
STI
1265
A
HOH
1001
3
HOH
HOH
1001
A
HOH
1002
3
HOH
HOH
1002
A
HOH
1003
3
HOH
HOH
1003
A
HOH
1004
3
HOH
HOH
1004
A
HOH
1005
3
HOH
HOH
1005
A
HOH
1006
3
HOH
HOH
1006
A
HOH
1007
3
HOH
HOH
1007
A
HOH
1008
3
HOH
HOH
1008
A
HOH
1009
3
HOH
HOH
1009
A
HOH
1010
3
HOH
HOH
1010
A
HOH
1011
3
HOH
HOH
1011
A
HOH
1012
3
HOH
HOH
1012
A
HOH
1013
3
HOH
HOH
1013
A
HOH
1014
3
HOH
HOH
1014
A
HOH
1015
3
HOH
HOH
1015
A
HOH
1016
3
HOH
HOH
1016
A
HOH
1017
3
HOH
HOH
1017
A
HOH
1018
3
HOH
HOH
1018
A
HOH
1019
3
HOH
HOH
1019
A
HOH
1020
3
HOH
HOH
1020
A
HOH
1021
3
HOH
HOH
1021
A
HOH
1022
3
HOH
HOH
1022
A
HOH
1023
3
HOH
HOH
1023
A
HOH
1024
3
HOH
HOH
1024
A
HOH
1025
3
HOH
HOH
1025
A
HOH
1026
3
HOH
HOH
1026
A
HOH
1027
3
HOH
HOH
1027
A
HOH
1028
3
HOH
HOH
1028
A
HOH
1029
3
HOH
HOH
1029
A
HOH
1030
3
HOH
HOH
1030
A
HOH
1031
3
HOH
HOH
1031
A
HOH
1032
3
HOH
HOH
1032
A
HOH
1033
3
HOH
HOH
1033
A
HOH
1034
3
HOH
HOH
1034
A
HOH
1035
3
HOH
HOH
1035
A
HOH
1036
3
HOH
HOH
1036
A
HOH
1037
3
HOH
HOH
1037
A
HOH
1038
3
HOH
HOH
1038
A
HOH
1039
3
HOH
HOH
1039
A
HOH
1040
3
HOH
HOH
1040
A
HOH
1041
3
HOH
HOH
1041
A
HOH
1042
3
HOH
HOH
1042
A
HOH
1043
3
HOH
HOH
1043
A
HOH
1044
3
HOH
HOH
1044
A
HOH
1045
3
HOH
HOH
1045
A
HOH
1046
3
HOH
HOH
1046
A
HOH
1047
3
HOH
HOH
1047
A
HOH
1048
3
HOH
HOH
1048
A
HOH
1049
3
HOH
HOH
1049
A
HOH
1050
3
HOH
HOH
1050
A
HOH
1051
3
HOH
HOH
1051
A
HOH
1052
3
HOH
HOH
1052
A
HOH
1053
3
HOH
HOH
1053
A
HOH
1054
3
HOH
HOH
1054
A
HOH
1055
3
HOH
HOH
1055
A
HOH
1056
3
HOH
HOH
1056
A
n
1
-4
A
n
2
-3
A
n
3
-2
A
n
4
-1
A
LYS
0
n
5
LYS
0
A
TRP
1
n
6
TRP
1
A
GLU
2
n
7
GLU
2
A
ILE
3
n
8
ILE
3
A
PRO
4
n
9
PRO
4
A
ARG
5
n
10
ARG
5
A
SER
6
n
11
SER
6
A
GLU
7
n
12
GLU
7
A
ILE
8
n
13
ILE
8
A
THR
9
n
14
THR
9
A
LEU
10
n
15
LEU
10
A
GLU
11
n
16
GLU
11
A
ARG
12
n
17
ARG
12
A
LYS
13
n
18
LYS
13
A
LEU
14
n
19
LEU
14
A
GLY
15
n
20
GLY
15
A
SER
16
n
21
SER
16
A
GLY
17
n
22
GLY
17
A
GLN
18
n
23
GLN
18
A
PHE
19
n
24
PHE
19
A
GLY
20
n
25
GLY
20
A
GLU
21
n
26
GLU
21
A
VAL
22
n
27
VAL
22
A
TYR
23
n
28
TYR
23
A
GLU
24
n
29
GLU
24
A
GLY
25
n
30
GLY
25
A
LYS
26
n
31
LYS
26
A
TRP
27
n
32
TRP
27
A
ARG
28
n
33
ARG
28
A
ASN
29
n
34
ASN
29
A
TYR
30
n
35
TYR
30
A
ASN
31
n
36
ASN
31
A
ILE
32
n
37
ILE
32
A
GLU
33
n
38
GLU
33
A
VAL
34
n
39
VAL
34
A
ALA
35
n
40
ALA
35
A
VAL
36
n
41
VAL
36
A
LYS
37
n
42
LYS
37
A
THR
38
n
43
THR
38
A
LEU
39
n
44
LEU
39
A
LYS
40
n
45
LYS
40
A
GLU
41
n
46
GLU
41
A
GLY
42
n
47
GLY
42
A
THR
43
n
48
THR
43
A
MET
44
n
49
MET
44
A
SER
45
n
50
SER
45
A
VAL
46
n
51
VAL
46
A
GLU
47
n
52
GLU
47
A
GLU
48
n
53
GLU
48
A
PHE
49
n
54
PHE
49
A
LEU
50
n
55
LEU
50
A
GLN
51
n
56
GLN
51
A
GLU
52
n
57
GLU
52
A
ALA
53
n
58
ALA
53
A
GLN
54
n
59
GLN
54
A
ILE
55
n
60
ILE
55
A
MET
56
n
61
MET
56
A
LYS
57
n
62
LYS
57
A
LYS
58
n
63
LYS
58
A
LEU
59
n
64
LEU
59
A
LYS
60
n
65
LYS
60
A
HIS
61
n
66
HIS
61
A
PRO
62
n
67
PRO
62
A
ASN
63
n
68
ASN
63
A
LEU
64
n
69
LEU
64
A
VAL
65
n
70
VAL
65
A
GLN
66
n
71
GLN
66
A
LEU
67
n
72
LEU
67
A
TYR
68
n
73
TYR
68
A
GLY
69
n
74
GLY
69
A
VAL
70
n
75
VAL
70
A
CYS
71
n
76
CYS
71
A
THR
72
n
77
THR
72
A
LYS
73
n
78
LYS
73
A
GLU
74
n
79
GLU
74
A
PRO
75
n
80
PRO
75
A
PRO
76
n
81
PRO
76
A
ILE
77
n
82
ILE
77
A
TYR
78
n
83
TYR
78
A
ILE
79
n
84
ILE
79
A
ILE
80
n
85
ILE
80
A
THR
81
n
86
THR
81
A
GLU
82
n
87
GLU
82
A
TYR
83
n
88
TYR
83
A
MET
84
n
89
MET
84
A
SER
85
n
90
SER
85
A
HIS
86
n
91
HIS
86
A
GLY
87
n
92
GLY
87
A
SER
88
n
93
SER
88
A
LEU
89
n
94
LEU
89
A
LEU
90
n
95
LEU
90
A
ASP
91
n
96
ASP
91
A
TYR
92
n
97
TYR
92
A
LEU
93
n
98
LEU
93
A
ARG
94
n
99
ARG
94
A
ASP
95
n
100
ASP
95
A
CYS
96
n
101
CYS
96
A
n
102
97
A
n
103
98
A
n
104
99
A
n
105
100
A
VAL
101
n
106
VAL
101
A
ASN
102
n
107
ASN
102
A
ALA
103
n
108
ALA
103
A
GLN
104
n
109
GLN
104
A
ALA
105
n
110
ALA
105
A
LEU
106
n
111
LEU
106
A
LEU
107
n
112
LEU
107
A
ASP
108
n
113
ASP
108
A
MET
109
n
114
MET
109
A
ALA
110
n
115
ALA
110
A
ALA
111
n
116
ALA
111
A
GLN
112
n
117
GLN
112
A
VAL
113
n
118
VAL
113
A
ALA
114
n
119
ALA
114
A
SER
115
n
120
SER
115
A
GLY
116
n
121
GLY
116
A
MET
117
n
122
MET
117
A
ALA
118
n
123
ALA
118
A
TYR
119
n
124
TYR
119
A
LEU
120
n
125
LEU
120
A
GLU
121
n
126
GLU
121
A
SER
122
n
127
SER
122
A
GLN
123
n
128
GLN
123
A
ASN
124
n
129
ASN
124
A
PHE
125
n
130
PHE
125
A
ILE
126
n
131
ILE
126
A
HIS
127
n
132
HIS
127
A
ARG
128
n
133
ARG
128
A
ASP
129
n
134
ASP
129
A
LEU
130
n
135
LEU
130
A
ALA
131
n
136
ALA
131
A
ALA
132
n
137
ALA
132
A
ARG
133
n
138
ARG
133
A
ASN
134
n
139
ASN
134
A
CYS
135
n
140
CYS
135
A
LEU
136
n
141
LEU
136
A
VAL
137
n
142
VAL
137
A
GLY
138
n
143
GLY
138
A
GLU
139
n
144
GLU
139
A
ASN
140
n
145
ASN
140
A
ASN
141
n
146
ASN
141
A
VAL
142
n
147
VAL
142
A
VAL
143
n
148
VAL
143
A
LYS
144
n
149
LYS
144
A
VAL
145
n
150
VAL
145
A
ALA
146
n
151
ALA
146
A
ASP
147
n
152
ASP
147
A
PHE
148
n
153
PHE
148
A
GLY
149
n
154
GLY
149
A
n
155
150
A
n
156
151
A
n
157
152
A
n
158
153
A
n
159
154
A
n
160
155
A
n
161
156
A
n
162
157
A
n
163
158
A
n
164
159
A
n
165
160
A
n
166
161
A
n
167
162
A
n
168
163
A
n
169
164
A
n
170
165
A
n
171
166
A
PHE
167
n
172
PHE
167
A
PRO
168
n
173
PRO
168
A
ILE
169
n
174
ILE
169
A
LYS
170
n
175
LYS
170
A
TRP
171
n
176
TRP
171
A
THR
172
n
177
THR
172
A
ALA
173
n
178
ALA
173
A
PRO
174
n
179
PRO
174
A
GLU
175
n
180
GLU
175
A
ALA
176
n
181
ALA
176
A
ILE
177
n
182
ILE
177
A
SER
178
n
183
SER
178
A
TYR
179
n
184
TYR
179
A
ASN
180
n
185
ASN
180
A
ARG
181
n
186
ARG
181
A
PHE
182
n
187
PHE
182
A
SER
183
n
188
SER
183
A
ILE
184
n
189
ILE
184
A
LYS
185
n
190
LYS
185
A
SER
186
n
191
SER
186
A
ASP
187
n
192
ASP
187
A
VAL
188
n
193
VAL
188
A
TRP
189
n
194
TRP
189
A
ALA
190
n
195
ALA
190
A
PHE
191
n
196
PHE
191
A
GLY
192
n
197
GLY
192
A
ILE
193
n
198
ILE
193
A
LEU
194
n
199
LEU
194
A
LEU
195
n
200
LEU
195
A
TRP
196
n
201
TRP
196
A
GLU
197
n
202
GLU
197
A
ILE
198
n
203
ILE
198
A
PHE
199
n
204
PHE
199
A
THR
200
n
205
THR
200
A
TYR
201
n
206
TYR
201
A
GLY
202
n
207
GLY
202
A
GLN
203
n
208
GLN
203
A
VAL
204
n
209
VAL
204
A
PRO
205
n
210
PRO
205
A
TYR
206
n
211
TYR
206
A
PRO
207
n
212
PRO
207
A
GLY
208
n
213
GLY
208
A
MET
209
n
214
MET
209
A
SER
210
n
215
SER
210
A
GLY
211
n
216
GLY
211
A
SER
212
n
217
SER
212
A
GLU
213
n
218
GLU
213
A
VAL
214
n
219
VAL
214
A
ILE
215
n
220
ILE
215
A
GLU
216
n
221
GLU
216
A
GLN
217
n
222
GLN
217
A
VAL
218
n
223
VAL
218
A
GLU
219
n
224
GLU
219
A
ARG
220
n
225
ARG
220
A
GLY
221
n
226
GLY
221
A
TYR
222
n
227
TYR
222
A
ARG
223
n
228
ARG
223
A
MET
224
n
229
MET
224
A
PRO
225
n
230
PRO
225
A
ARG
226
n
231
ARG
226
A
PRO
227
n
232
PRO
227
A
GLN
228
n
233
GLN
228
A
GLY
229
n
234
GLY
229
A
CYS
230
n
235
CYS
230
A
PRO
231
n
236
PRO
231
A
GLU
232
n
237
GLU
232
A
GLU
233
n
238
GLU
233
A
ILE
234
n
239
ILE
234
A
TYR
235
n
240
TYR
235
A
GLU
236
n
241
GLU
236
A
LEU
237
n
242
LEU
237
A
MET
238
n
243
MET
238
A
LEU
239
n
244
LEU
239
A
GLN
240
n
245
GLN
240
A
CYS
241
n
246
CYS
241
A
TRP
242
n
247
TRP
242
A
ASN
243
n
248
ASN
243
A
LYS
244
n
249
LYS
244
A
SER
245
n
250
SER
245
A
PRO
246
n
251
PRO
246
A
GLU
247
n
252
GLU
247
A
GLU
248
n
253
GLU
248
A
ARG
249
n
254
ARG
249
A
PRO
250
n
255
PRO
250
A
THR
251
n
256
THR
251
A
PHE
252
n
257
PHE
252
A
ALA
253
n
258
ALA
253
A
GLU
254
n
259
GLU
254
A
THR
255
n
260
THR
255
A
LEU
256
n
261
LEU
256
A
HIS
257
n
262
HIS
257
A
ALA
258
n
263
ALA
258
A
LEU
259
n
264
LEU
259
A
GLU
260
n
265
GLU
260
A
THR
261
n
266
THR
261
A
MET
262
n
267
MET
262
A
PHE
263
n
268
PHE
263
A
LEU
264
n
269
LEU
264
A
n
270
265
A
n
271
266
A
n
272
267
A
n
273
268
A
n
274
269
A
n
275
270
A
software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
14
A
N
LEU
19
A
O
VAL
22
A
O
VAL
27
A
N
TRP
27
A
N
TRP
32
A
O
ILE
32
A
O
ILE
37
A
N
LYS
37
A
N
LYS
42
A
O
ILE
79
A
O
ILE
84
A
O
ILE
80
A
O
ILE
85
A
N
TYR
68
A
N
TYR
73
A
N
LEU
136
A
N
LEU
141
A
O
LYS
144
A
O
LYS
149
1
A
C
GLY
149
A
C
GLY
154
1
Y
1
A
O
GLY
149
A
O
GLY
154
1
Y
1
A
GLY
-4
A
GLY
1
1
Y
1
A
PRO
-3
A
PRO
2
1
Y
1
A
HIS
-2
A
HIS
3
1
Y
1
A
ASP
-1
A
ASP
4
1
Y
1
A
GLU
97
A
GLU
102
1
Y
1
A
GLY
98
A
GLY
103
1
Y
1
A
HIS
99
A
HIS
104
1
Y
1
A
THR
100
A
THR
105
1
Y
1
A
LEU
150
A
LEU
155
1
Y
1
A
ALA
151
A
ALA
156
1
Y
1
A
ARG
152
A
ARG
157
1
Y
1
A
LEU
153
A
LEU
158
1
Y
1
A
ILE
154
A
ILE
159
1
Y
1
A
ASN
155
A
ASN
160
1
Y
1
A
GLU
156
A
GLU
161
1
Y
1
A
ASP
157
A
ASP
162
1
Y
1
A
GLU
158
A
GLU
163
1
Y
1
A
TYR
159
A
TYR
164
1
Y
1
A
THR
160
A
THR
165
1
Y
1
A
ALA
161
A
ALA
166
1
Y
1
A
ARG
162
A
ARG
167
1
Y
1
A
ALA
163
A
ALA
168
1
Y
1
A
GLY
164
A
GLY
169
1
Y
1
A
ALA
165
A
ALA
170
1
Y
1
A
LYS
166
A
LYS
171
1
Y
1
A
PRO
265
A
PRO
270
1
Y
1
A
GLU
266
A
GLU
271
1
Y
1
A
THR
267
A
THR
272
1
Y
1
A
GLY
268
A
GLY
273
1
Y
1
A
GLY
269
A
GLY
274
1
Y
1
A
GLY
270
A
GLY
275
1
Y
1
A
ASN
29
-40.92
-72.83
1
A
ARG
128
88.45
-8.72
1
A
ASP
129
-149.61
36.34
1
A
PHE
148
-91.18
-68.14
59.540
0.15
0.00
2.67
-3.16
0.00
0.22
0.969
0.944
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY
0.24159
0.18728
0.19044
2.05
62.43
886
14124
5.9
87.13
7.623
0.189
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.243
0.202
0.80
0.80
1.20
PDB ENTRY 4CDS
MAXIMUM LIKELIHOOD
MASK
2.05
62.43
56
2061
37
0
1968
0.010
0.019
2057
0.002
0.020
1933
1.420
1.979
2785
0.974
3.000
4450
6.263
5.000
241
40.719
24.375
96
16.286
15.000
352
12.224
15.000
11
0.081
0.200
293
0.007
0.021
2301
0.008
0.020
483
3.585
5.659
971
3.571
5.655
970
5.207
8.464
1209
4.219
6.220
1086
0.373
0.305
2.102
54
1137
20
91.33
2.05
42.36
4CSV
15954
2.0
0.04
1
10.10
2.5
93.1
0.41
2.05
2.11
2.00
1
2.5
96.8
refinement
REFMAC
5.8.0049
data reduction
XDS
data scaling
Aimless
phasing
MOLREP
AUTO MR
Tyrosine kinase AS - a common ancestor of Src and Abl bound to Gleevec
1
N
N
2
N
N
3
N
N
A
PRO
4
A
PRO
9
HELX_P
A
SER
6
A
SER
11
5
1
3
A
SER
45
A
SER
50
HELX_P
A
LYS
57
A
LYS
62
1
2
13
A
SER
88
A
SER
93
HELX_P
A
ARG
94
A
ARG
99
1
3
7
A
ASN
102
A
ASN
107
HELX_P
A
GLN
123
A
GLN
128
1
4
22
A
ALA
131
A
ALA
136
HELX_P
A
ARG
133
A
ARG
138
5
5
3
A
GLU
139
A
GLU
144
HELX_P
A
ASN
141
A
ASN
146
5
6
3
A
PRO
168
A
PRO
173
HELX_P
A
THR
172
A
THR
177
5
7
5
A
ALA
173
A
ALA
178
HELX_P
A
ASN
180
A
ASN
185
1
8
8
A
SER
183
A
SER
188
HELX_P
A
THR
200
A
THR
205
1
9
18
A
SER
210
A
SER
215
HELX_P
A
ARG
220
A
ARG
225
1
10
11
A
PRO
231
A
PRO
236
HELX_P
A
TRP
242
A
TRP
247
1
11
12
A
SER
245
A
SER
250
HELX_P
A
ARG
249
A
ARG
254
5
12
5
A
THR
251
A
THR
256
HELX_P
A
THR
261
A
THR
266
1
13
11
TRANSFERASE
TRANSFERASE, DFG
A
PRO
75
A
PRO
80
1
A
PRO
76
A
PRO
81
-7.95
A
PHE
167
A
PHE
172
1
A
PRO
168
A
PRO
173
-11.10
4CSV
PDB
1
4CSV
-4
270
4CSV
-4
270
4CSV
A
1
1
275
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
8
A
ILE
13
A
GLY
15
A
GLY
20
A
VAL
22
A
VAL
27
A
TRP
27
A
TRP
32
A
ILE
32
A
ILE
37
A
THR
38
A
THR
43
A
TYR
78
A
TYR
83
A
GLU
82
A
GLU
87
A
LEU
67
A
LEU
72
A
CYS
71
A
CYS
76
A
CYS
135
A
CYS
140
A
VAL
137
A
VAL
142
A
VAL
143
A
VAL
148
A
VAL
145
A
VAL
150
BINDING SITE FOR RESIDUE STI A 1265
A
STI
1265
Software
17
A
ALA
35
A
ALA
40
17
1_555
A
LYS
37
A
LYS
42
17
1_555
A
GLU
52
A
GLU
57
17
1_555
A
MET
56
A
MET
61
17
1_555
A
VAL
65
A
VAL
70
17
1_555
A
ILE
79
A
ILE
84
17
1_555
A
THR
81
A
THR
86
17
1_555
A
TYR
83
A
TYR
88
17
1_555
A
MET
84
A
MET
89
17
1_555
A
ILE
126
A
ILE
131
17
1_555
A
HIS
127
A
HIS
132
17
1_555
A
LEU
136
A
LEU
141
17
1_555
A
ALA
146
A
ALA
151
17
1_555
A
ASP
147
A
ASP
152
17
1_555
A
PHE
148
A
PHE
153
17
1_555
A
HOH
1007
C
HOH
17
1_555
A
HOH
1014
C
HOH
17
1_555
5
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