0.017298
0.000000
0.000000
0.000000
0.011456
0.000000
0.000000
0.000000
0.010798
0.00000
0.00000
0.00000
Ruane, K.M.
Majce, V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
57.810
87.290
92.610
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C7 H14 N2 O4
190.197
n
2,6-DIAMINOPIMELIC ACID
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
GAMMA-D-GLUTAMIC ACID
D-GLUTAMIC ACID
D-gamma-peptide, C-delta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C11 H19 N O8
293.270
N-acetyl-alpha-muramic acid
N-acetyl-muramic acid; N-ACETYLMURAMIC ACID
D-saccharide, alpha linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H14 N2 O12 P2
404.161
URIDINE-5'-DIPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
C
N
15
S
C
N
16
N
C
N
17
N
C
N
18
N
C
N
19
R
C
N
20
N
C
N
21
N
O
N
22
N
O
N
23
N
O
N
24
N
O
N
25
N
N
N
26
N
N
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
C
N
48
N
N
N
49
N
C
N
50
N
N
N
51
N
N
N
52
N
O
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
N
N
69
S
C
N
70
N
C
N
71
N
O
N
72
N
C
N
73
N
C
N
74
N
O
N
75
N
N
N
76
N
O
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
N
N
86
S
C
N
87
N
C
N
88
N
O
N
89
N
C
N
90
N
C
N
91
N
O
N
92
N
O
N
93
N
O
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
N
N
102
R
C
N
103
N
C
N
104
N
O
N
105
N
C
N
106
N
S
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
R
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
C
N
122
N
O
N
123
N
O
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
N
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
N
C
N
159
N
C
N
160
N
C
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
N
C
N
175
N
C
N
176
N
O
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
Y
188
N
C
Y
189
N
N
Y
190
N
C
Y
191
N
C
Y
192
N
N
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
S
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
N
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
C
N
282
N
S
N
283
N
C
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
S
C
N
297
R
C
N
298
R
C
N
299
S
C
N
300
R
C
N
301
N
C
N
302
N
C
N
303
N
C
N
304
R
C
N
305
N
C
N
306
N
C
N
307
N
O
N
308
N
O
N
309
N
O
N
310
N
O
N
311
N
O
N
312
N
O
N
313
N
O
N
314
N
O
N
315
N
N
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
R
C
N
394
N
O
N
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
N
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
N
444
N
O
N
445
N
O
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
N
N
458
N
C
N
459
N
N
N
460
N
C
N
461
N
C
N
462
N
C
N
463
N
O
N
464
N
O
N
465
R
C
N
466
R
C
N
467
N
O
N
468
S
C
N
469
R
C
N
470
N
O
N
471
N
O
N
472
N
C
N
473
N
O
N
474
N
P
N
475
N
O
N
476
N
O
N
477
N
O
N
478
N
P
N
479
N
O
N
480
N
O
N
481
N
O
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
N
N
497
S
C
N
498
N
C
N
499
N
O
N
500
N
C
N
501
N
C
N
502
N
C
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
doub
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
Y
184
N
sing
Y
185
N
doub
Y
186
N
doub
N
187
N
sing
Y
188
N
sing
N
189
N
sing
Y
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
Y
331
N
doub
Y
332
N
sing
Y
333
N
sing
N
334
N
sing
Y
335
N
doub
N
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
doub
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
Y
400
N
doub
Y
401
N
sing
Y
402
N
sing
N
403
N
sing
Y
404
N
doub
Y
405
N
sing
Y
406
N
sing
N
407
N
sing
Y
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
doub
N
412
N
sing
Y
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
Y
428
N
doub
Y
429
N
sing
Y
430
N
sing
N
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
doub
N
435
N
sing
Y
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
doub
N
450
N
doub
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
doub
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
doub
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
doub
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
To be Published
0353
Pamurf in Complex with Udp-Murnac-Tripeptide (Mdap)
10.2210/pdb4cvk/pdb
pdb_00004cvk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
PIXEL
DECTRIS PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
0.92
1.0
I04-1
Diamond
0.92
SYNCHROTRON
DIAMOND BEAMLINE I04-1
49365.984
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
1
man
polymer
390.389
ALA-FGA-API
1
syn
polymer
404.161
URIDINE-5'-DIPHOSPHATE
1
syn
non-polymer
293.270
N-acetyl-alpha-muramic acid
1
syn
non-polymer
18.015
water
84
nat
water
no
no
MLEPLRLSQLTVALDARLIGEDAVFSAVSTDSRAIGPGELFIALSGPRFDGHDYLAEVAAKGAVAALVEREVADAPLPQL
LVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRS
AVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGR
PLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPV
KGRAVAQLTASGLRVIDDSYNANPASMLAAIDILSGFSGRTVLVLGDMGELGSWAEQAHREVGAYAAGKVSALYAVGPLM
AHAVQAFGATGRHFADQASLIGALATEDPTTTILIKGSRSAAMDKVVAALCGSSEESHSSVDKLAAALEHHHHHH
MLEPLRLSQLTVALDARLIGEDAVFSAVSTDSRAIGPGELFIALSGPRFDGHDYLAEVAAKGAVAALVEREVADAPLPQL
LVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRS
AVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGR
PLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPV
KGRAVAQLTASGLRVIDDSYNANPASMLAAIDILSGFSGRTVLVLGDMGELGSWAEQAHREVGAYAAGKVSALYAVGPLM
AHAVQAFGATGRHFADQASLIGALATEDPTTTILIKGSRSAAMDKVVAALCGSSEESHSSVDKLAAALEHHHHHH
A
polypeptide(L)
no
yes
A(FGA)(API)
AEK
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
475
15692
murF
208964
Pseudomonas aeruginosa PAO1
562
ESCHERICHIA COLI
PET
PLASMID
Biological sequence
1
2.5
50
NONE
0.2 M MG FORMATE, 20 % PEG3350
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_nonpoly
struct_conn
struct_site
struct_site_gen
atom_site
chem_comp
database_2
entity
entity_poly
entity_poly_seq
entity_src_gen
pdbx_entity_nonpoly
pdbx_entity_src_syn
pdbx_nonpoly_scheme
pdbx_poly_seq_scheme
pdbx_struct_assembly
pdbx_struct_assembly_gen
pdbx_struct_assembly_prop
struct_asym
struct_conn
struct_ref
struct_ref_seq
atom_site
chem_comp_atom
chem_comp_bond
struct_conn
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Structure summary
Data collection
Data collection
Derived calculations
Other
Structure summary
Atomic model
Data collection
Database references
Derived calculations
Polymer sequence
Source and taxonomy
Structure summary
Atomic model
Data collection
Derived calculations
Refinement description
1
0
2015-04-22
1
1
2015-04-29
1
2
2015-09-23
1
3
2020-07-29
2
0
2022-12-07
3
0
2023-11-15
3
1
2024-01-31
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_database_status.status_code_sf
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_leaving_atom_flag
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.group_PDB
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.type_symbol
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_entity_src_gen.pdbx_beg_seq_num
_entity_src_gen.pdbx_end_seq_num
_entity_src_gen.pdbx_gene_src_gene
_entity_src_gen.pdbx_gene_src_scientific_name
_entity_src_gen.pdbx_seq_type
_pdbx_struct_assembly.details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_seq_id
_atom_site.auth_atom_id
_atom_site.label_atom_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr2_label_atom_id
a-D-GlcpNAc3<C3O2>
MurNAc
PAMURF IN COMPLEX WITH AMP-PNP
PAMURF IN COMPLEX WITH AMP-PNP AND UDP-MURNAC- TRIPEPTIDE (MDAP)
PDBE
Y
PDBE
2014-03-28
REL
REL
UDP
URIDINE-5'-DIPHOSPHATE
MUB
N-acetyl-alpha-muramic acid
HOH
water
32630
synthetic construct
sample
1
3
CONTAINS A C-TERM HIS TAG
1GG4
PDB ENTRY 1GG4
PDB
experimental model
UDP
1452
3
UDP
UDP
1452
A
MUB
1453
4
MUB
MUB
1453
A
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2041
5
HOH
HOH
2041
A
HOH
2042
5
HOH
HOH
2042
A
HOH
2043
5
HOH
HOH
2043
A
HOH
2044
5
HOH
HOH
2044
A
HOH
2045
5
HOH
HOH
2045
A
HOH
2046
5
HOH
HOH
2046
A
HOH
2047
5
HOH
HOH
2047
A
HOH
2048
5
HOH
HOH
2048
A
HOH
2049
5
HOH
HOH
2049
A
HOH
2050
5
HOH
HOH
2050
A
HOH
2051
5
HOH
HOH
2051
A
HOH
2052
5
HOH
HOH
2052
A
HOH
2053
5
HOH
HOH
2053
A
HOH
2054
5
HOH
HOH
2054
A
HOH
2055
5
HOH
HOH
2055
A
HOH
2056
5
HOH
HOH
2056
A
HOH
2057
5
HOH
HOH
2057
A
HOH
2058
5
HOH
HOH
2058
A
HOH
2059
5
HOH
HOH
2059
A
HOH
2060
5
HOH
HOH
2060
A
HOH
2061
5
HOH
HOH
2061
A
HOH
2062
5
HOH
HOH
2062
A
HOH
2063
5
HOH
HOH
2063
A
HOH
2064
5
HOH
HOH
2064
A
HOH
2065
5
HOH
HOH
2065
A
HOH
2066
5
HOH
HOH
2066
A
HOH
2067
5
HOH
HOH
2067
A
HOH
2068
5
HOH
HOH
2068
A
HOH
2069
5
HOH
HOH
2069
A
HOH
2070
5
HOH
HOH
2070
A
HOH
2071
5
HOH
HOH
2071
A
HOH
2072
5
HOH
HOH
2072
A
HOH
2073
5
HOH
HOH
2073
A
HOH
2074
5
HOH
HOH
2074
A
HOH
2075
5
HOH
HOH
2075
A
HOH
2076
5
HOH
HOH
2076
A
HOH
2077
5
HOH
HOH
2077
A
HOH
2078
5
HOH
HOH
2078
A
HOH
2079
5
HOH
HOH
2079
A
HOH
2080
5
HOH
HOH
2080
A
HOH
2081
5
HOH
HOH
2081
A
HOH
2082
5
HOH
HOH
2082
A
HOH
2083
5
HOH
HOH
2083
A
HOH
2084
5
HOH
HOH
2084
A
MET
1
n
1
MET
1
A
LEU
2
n
2
LEU
2
A
GLU
3
n
3
GLU
3
A
PRO
4
n
4
PRO
4
A
LEU
5
n
5
LEU
5
A
ARG
6
n
6
ARG
6
A
LEU
7
n
7
LEU
7
A
SER
8
n
8
SER
8
A
GLN
9
n
9
GLN
9
A
LEU
10
n
10
LEU
10
A
THR
11
n
11
THR
11
A
VAL
12
n
12
VAL
12
A
ALA
13
n
13
ALA
13
A
LEU
14
n
14
LEU
14
A
ASP
15
n
15
ASP
15
A
ALA
16
n
16
ALA
16
A
ARG
17
n
17
ARG
17
A
LEU
18
n
18
LEU
18
A
ILE
19
n
19
ILE
19
A
GLY
20
n
20
GLY
20
A
GLU
21
n
21
GLU
21
A
ASP
22
n
22
ASP
22
A
ALA
23
n
23
ALA
23
A
VAL
24
n
24
VAL
24
A
PHE
25
n
25
PHE
25
A
SER
26
n
26
SER
26
A
ALA
27
n
27
ALA
27
A
VAL
28
n
28
VAL
28
A
SER
29
n
29
SER
29
A
THR
30
n
30
THR
30
A
ASP
31
n
31
ASP
31
A
SER
32
n
32
SER
32
A
ARG
33
n
33
ARG
33
A
ALA
34
n
34
ALA
34
A
ILE
35
n
35
ILE
35
A
GLY
36
n
36
GLY
36
A
PRO
37
n
37
PRO
37
A
GLY
38
n
38
GLY
38
A
GLU
39
n
39
GLU
39
A
LEU
40
n
40
LEU
40
A
PHE
41
n
41
PHE
41
A
ILE
42
n
42
ILE
42
A
ALA
43
n
43
ALA
43
A
LEU
44
n
44
LEU
44
A
SER
45
n
45
SER
45
A
GLY
46
n
46
GLY
46
A
PRO
47
n
47
PRO
47
A
ARG
48
n
48
ARG
48
A
PHE
49
n
49
PHE
49
A
ASP
50
n
50
ASP
50
A
GLY
51
n
51
GLY
51
A
HIS
52
n
52
HIS
52
A
ASP
53
n
53
ASP
53
A
TYR
54
n
54
TYR
54
A
LEU
55
n
55
LEU
55
A
ALA
56
n
56
ALA
56
A
GLU
57
n
57
GLU
57
A
VAL
58
n
58
VAL
58
A
ALA
59
n
59
ALA
59
A
ALA
60
n
60
ALA
60
A
LYS
61
n
61
LYS
61
A
GLY
62
n
62
GLY
62
A
ALA
63
n
63
ALA
63
A
VAL
64
n
64
VAL
64
A
ALA
65
n
65
ALA
65
A
ALA
66
n
66
ALA
66
A
LEU
67
n
67
LEU
67
A
VAL
68
n
68
VAL
68
A
GLU
69
n
69
GLU
69
A
ARG
70
n
70
ARG
70
A
GLU
71
n
71
GLU
71
A
VAL
72
n
72
VAL
72
A
ALA
73
n
73
ALA
73
A
n
74
74
A
ALA
75
n
75
ALA
75
A
PRO
76
n
76
PRO
76
A
LEU
77
n
77
LEU
77
A
PRO
78
n
78
PRO
78
A
GLN
79
n
79
GLN
79
A
LEU
80
n
80
LEU
80
A
LEU
81
n
81
LEU
81
A
VAL
82
n
82
VAL
82
A
ARG
83
n
83
ARG
83
A
ASP
84
n
84
ASP
84
A
THR
85
n
85
THR
85
A
ARG
86
n
86
ARG
86
A
ALA
87
n
87
ALA
87
A
ALA
88
n
88
ALA
88
A
LEU
89
n
89
LEU
89
A
GLY
90
n
90
GLY
90
A
ARG
91
n
91
ARG
91
A
LEU
92
n
92
LEU
92
A
GLY
93
n
93
GLY
93
A
ALA
94
n
94
ALA
94
A
LEU
95
n
95
LEU
95
A
ASN
96
n
96
ASN
96
A
ARG
97
n
97
ARG
97
A
ARG
98
n
98
ARG
98
A
LYS
99
n
99
LYS
99
A
PHE
100
n
100
PHE
100
A
THR
101
n
101
THR
101
A
GLY
102
n
102
GLY
102
A
PRO
103
n
103
PRO
103
A
LEU
104
n
104
LEU
104
A
ALA
105
n
105
ALA
105
A
ALA
106
n
106
ALA
106
A
MET
107
n
107
MET
107
A
THR
108
n
108
THR
108
A
GLY
109
n
109
GLY
109
A
SER
110
n
110
SER
110
A
SER
111
n
111
SER
111
A
GLY
112
n
112
GLY
112
A
LYS
113
n
113
LYS
113
A
THR
114
n
114
THR
114
A
THR
115
n
115
THR
115
A
VAL
116
n
116
VAL
116
A
LYS
117
n
117
LYS
117
A
GLU
118
n
118
GLU
118
A
MET
119
n
119
MET
119
A
LEU
120
n
120
LEU
120
A
ALA
121
n
121
ALA
121
A
SER
122
n
122
SER
122
A
ILE
123
n
123
ILE
123
A
LEU
124
n
124
LEU
124
A
ARG
125
n
125
ARG
125
A
THR
126
n
126
THR
126
A
GLN
127
n
127
GLN
127
A
ALA
128
n
128
ALA
128
A
GLY
129
n
129
GLY
129
A
ASP
130
n
130
ASP
130
A
ALA
131
n
131
ALA
131
A
GLU
132
n
132
GLU
132
A
SER
133
n
133
SER
133
A
VAL
134
n
134
VAL
134
A
LEU
135
n
135
LEU
135
A
ALA
136
n
136
ALA
136
A
THR
137
n
137
THR
137
A
ARG
138
n
138
ARG
138
A
GLY
139
n
139
GLY
139
A
ASN
140
n
140
ASN
140
A
LEU
141
n
141
LEU
141
A
ASN
142
n
142
ASN
142
A
ASN
143
n
143
ASN
143
A
ASP
144
n
144
ASP
144
A
LEU
145
n
145
LEU
145
A
GLY
146
n
146
GLY
146
A
VAL
147
n
147
VAL
147
A
PRO
148
n
148
PRO
148
A
LEU
149
n
149
LEU
149
A
THR
150
n
150
THR
150
A
LEU
151
n
151
LEU
151
A
LEU
152
n
152
LEU
152
A
GLN
153
n
153
GLN
153
A
LEU
154
n
154
LEU
154
A
ALA
155
n
155
ALA
155
A
PRO
156
n
156
PRO
156
A
GLN
157
n
157
GLN
157
A
HIS
158
n
158
HIS
158
A
ARG
159
n
159
ARG
159
A
SER
160
n
160
SER
160
A
ALA
161
n
161
ALA
161
A
VAL
162
n
162
VAL
162
A
ILE
163
n
163
ILE
163
A
GLU
164
n
164
GLU
164
A
LEU
165
n
165
LEU
165
A
GLY
166
n
166
GLY
166
A
ALA
167
n
167
ALA
167
A
SER
168
n
168
SER
168
A
ARG
169
n
169
ARG
169
A
ILE
170
n
170
ILE
170
A
GLY
171
n
171
GLY
171
A
GLU
172
n
172
GLU
172
A
ILE
173
n
173
ILE
173
A
ALA
174
n
174
ALA
174
A
TYR
175
n
175
TYR
175
A
THR
176
n
176
THR
176
A
VAL
177
n
177
VAL
177
A
GLU
178
n
178
GLU
178
A
LEU
179
n
179
LEU
179
A
THR
180
n
180
THR
180
A
ARG
181
n
181
ARG
181
A
PRO
182
n
182
PRO
182
A
HIS
183
n
183
HIS
183
A
VAL
184
n
184
VAL
184
A
ALA
185
n
185
ALA
185
A
ILE
186
n
186
ILE
186
A
ILE
187
n
187
ILE
187
A
THR
188
n
188
THR
188
A
ASN
189
n
189
ASN
189
A
ALA
190
n
190
ALA
190
A
n
191
191
A
n
192
192
A
n
193
193
A
n
194
194
A
n
195
195
A
n
196
196
A
n
197
197
A
PHE
198
n
198
PHE
198
A
GLY
199
n
199
GLY
199
A
GLY
200
n
200
GLY
200
A
PRO
201
n
201
PRO
201
A
GLU
202
n
202
GLU
202
A
LYS
203
n
203
LYS
203
A
ILE
204
n
204
ILE
204
A
VAL
205
n
205
VAL
205
A
GLU
206
n
206
GLU
206
A
ALA
207
n
207
ALA
207
A
LYS
208
n
208
LYS
208
A
GLY
209
n
209
GLY
209
A
GLU
210
n
210
GLU
210
A
ILE
211
n
211
ILE
211
A
LEU
212
n
212
LEU
212
A
GLU
213
n
213
GLU
213
A
GLY
214
n
214
GLY
214
A
LEU
215
n
215
LEU
215
A
ALA
216
n
216
ALA
216
A
ALA
217
n
217
ALA
217
A
ASP
218
n
218
ASP
218
A
GLY
219
n
219
GLY
219
A
THR
220
n
220
THR
220
A
ALA
221
n
221
ALA
221
A
VAL
222
n
222
VAL
222
A
LEU
223
n
223
LEU
223
A
ASN
224
n
224
ASN
224
A
LEU
225
n
225
LEU
225
A
ASP
226
n
226
ASP
226
A
ASP
227
n
227
ASP
227
A
LYS
228
n
228
LYS
228
A
ALA
229
n
229
ALA
229
A
PHE
230
n
230
PHE
230
A
ASP
231
n
231
ASP
231
A
THR
232
n
232
THR
232
A
TRP
233
n
233
TRP
233
A
LYS
234
n
234
LYS
234
A
ALA
235
n
235
ALA
235
A
ARG
236
n
236
ARG
236
A
ALA
237
n
237
ALA
237
A
SER
238
n
238
SER
238
A
GLY
239
n
239
GLY
239
A
ARG
240
n
240
ARG
240
A
PRO
241
n
241
PRO
241
A
LEU
242
n
242
LEU
242
A
LEU
243
n
243
LEU
243
A
THR
244
n
244
THR
244
A
PHE
245
n
245
PHE
245
A
SER
246
n
246
SER
246
A
LEU
247
n
247
LEU
247
A
ASP
248
n
248
ASP
248
A
ARG
249
n
249
ARG
249
A
PRO
250
n
250
PRO
250
A
GLN
251
n
251
GLN
251
A
ALA
252
n
252
ALA
252
A
ASP
253
n
253
ASP
253
A
PHE
254
n
254
PHE
254
A
ARG
255
n
255
ARG
255
A
ALA
256
n
256
ALA
256
A
ALA
257
n
257
ALA
257
A
ASP
258
n
258
ASP
258
A
LEU
259
n
259
LEU
259
A
GLN
260
n
260
GLN
260
A
ARG
261
n
261
ARG
261
A
ASP
262
n
262
ASP
262
A
ALA
263
n
263
ALA
263
A
ARG
264
n
264
ARG
264
A
GLY
265
n
265
GLY
265
A
CYS
266
n
266
CYS
266
A
MET
267
n
267
MET
267
A
GLY
268
n
268
GLY
268
A
PHE
269
n
269
PHE
269
A
ARG
270
n
270
ARG
270
A
LEU
271
n
271
LEU
271
A
GLN
272
n
272
GLN
272
A
GLY
273
n
273
GLY
273
A
VAL
274
n
274
VAL
274
A
ALA
275
n
275
ALA
275
A
GLY
276
n
276
GLY
276
A
GLU
277
n
277
GLU
277
A
ALA
278
n
278
ALA
278
A
GLN
279
n
279
GLN
279
A
VAL
280
n
280
VAL
280
A
GLN
281
n
281
GLN
281
A
LEU
282
n
282
LEU
282
A
ASN
283
n
283
ASN
283
A
LEU
284
n
284
LEU
284
A
LEU
285
n
285
LEU
285
A
GLY
286
n
286
GLY
286
A
ARG
287
n
287
ARG
287
A
HIS
288
n
288
HIS
288
A
ASN
289
n
289
ASN
289
A
VAL
290
n
290
VAL
290
A
ALA
291
n
291
ALA
291
A
ASN
292
n
292
ASN
292
A
ALA
293
n
293
ALA
293
A
LEU
294
n
294
LEU
294
A
ALA
295
n
295
ALA
295
A
ALA
296
n
296
ALA
296
A
ALA
297
n
297
ALA
297
A
ALA
298
n
298
ALA
298
A
ALA
299
n
299
ALA
299
A
ALA
300
n
300
ALA
300
A
HIS
301
n
301
HIS
301
A
ALA
302
n
302
ALA
302
A
LEU
303
n
303
LEU
303
A
GLY
304
n
304
GLY
304
A
VAL
305
n
305
VAL
305
A
PRO
306
n
306
PRO
306
A
LEU
307
n
307
LEU
307
A
ASP
308
n
308
ASP
308
A
GLY
309
n
309
GLY
309
A
ILE
310
n
310
ILE
310
A
VAL
311
n
311
VAL
311
A
ALA
312
n
312
ALA
312
A
GLY
313
n
313
GLY
313
A
LEU
314
n
314
LEU
314
A
GLN
315
n
315
GLN
315
A
ALA
316
n
316
ALA
316
A
LEU
317
n
317
LEU
317
A
GLN
318
n
318
GLN
318
A
PRO
319
n
319
PRO
319
A
VAL
320
n
320
VAL
320
A
LYS
321
n
321
LYS
321
A
GLY
322
n
322
GLY
322
A
ARG
323
n
323
ARG
323
A
ALA
324
n
324
ALA
324
A
VAL
325
n
325
VAL
325
A
ALA
326
n
326
ALA
326
A
GLN
327
n
327
GLN
327
A
LEU
328
n
328
LEU
328
A
THR
329
n
329
THR
329
A
ALA
330
n
330
ALA
330
A
SER
331
n
331
SER
331
A
GLY
332
n
332
GLY
332
A
LEU
333
n
333
LEU
333
A
ARG
334
n
334
ARG
334
A
VAL
335
n
335
VAL
335
A
ILE
336
n
336
ILE
336
A
ASP
337
n
337
ASP
337
A
ASP
338
n
338
ASP
338
A
SER
339
n
339
SER
339
A
TYR
340
n
340
TYR
340
A
ASN
341
n
341
ASN
341
A
ALA
342
n
342
ALA
342
A
ASN
343
n
343
ASN
343
A
PRO
344
n
344
PRO
344
A
ALA
345
n
345
ALA
345
A
SER
346
n
346
SER
346
A
MET
347
n
347
MET
347
A
LEU
348
n
348
LEU
348
A
ALA
349
n
349
ALA
349
A
ALA
350
n
350
ALA
350
A
ILE
351
n
351
ILE
351
A
ASP
352
n
352
ASP
352
A
ILE
353
n
353
ILE
353
A
LEU
354
n
354
LEU
354
A
SER
355
n
355
SER
355
A
GLY
356
n
356
GLY
356
A
PHE
357
n
357
PHE
357
A
SER
358
n
358
SER
358
A
GLY
359
n
359
GLY
359
A
ARG
360
n
360
ARG
360
A
THR
361
n
361
THR
361
A
VAL
362
n
362
VAL
362
A
LEU
363
n
363
LEU
363
A
VAL
364
n
364
VAL
364
A
LEU
365
n
365
LEU
365
A
GLY
366
n
366
GLY
366
A
ASP
367
n
367
ASP
367
A
MET
368
n
368
MET
368
A
GLY
369
n
369
GLY
369
A
n
370
370
A
n
371
371
A
n
372
372
A
n
373
373
A
n
374
374
A
ALA
375
n
375
ALA
375
A
GLU
376
n
376
GLU
376
A
GLN
377
n
377
GLN
377
A
ALA
378
n
378
ALA
378
A
HIS
379
n
379
HIS
379
A
ARG
380
n
380
ARG
380
A
GLU
381
n
381
GLU
381
A
VAL
382
n
382
VAL
382
A
GLY
383
n
383
GLY
383
A
ALA
384
n
384
ALA
384
A
TYR
385
n
385
TYR
385
A
ALA
386
n
386
ALA
386
A
ALA
387
n
387
ALA
387
A
GLY
388
n
388
GLY
388
A
LYS
389
n
389
LYS
389
A
VAL
390
n
390
VAL
390
A
SER
391
n
391
SER
391
A
ALA
392
n
392
ALA
392
A
LEU
393
n
393
LEU
393
A
TYR
394
n
394
TYR
394
A
ALA
395
n
395
ALA
395
A
VAL
396
n
396
VAL
396
A
GLY
397
n
397
GLY
397
A
PRO
398
n
398
PRO
398
A
LEU
399
n
399
LEU
399
A
MET
400
n
400
MET
400
A
ALA
401
n
401
ALA
401
A
HIS
402
n
402
HIS
402
A
ALA
403
n
403
ALA
403
A
VAL
404
n
404
VAL
404
A
GLN
405
n
405
GLN
405
A
ALA
406
n
406
ALA
406
A
PHE
407
n
407
PHE
407
A
GLY
408
n
408
GLY
408
A
ALA
409
n
409
ALA
409
A
THR
410
n
410
THR
410
A
GLY
411
n
411
GLY
411
A
ARG
412
n
412
ARG
412
A
HIS
413
n
413
HIS
413
A
PHE
414
n
414
PHE
414
A
ALA
415
n
415
ALA
415
A
ASP
416
n
416
ASP
416
A
GLN
417
n
417
GLN
417
A
ALA
418
n
418
ALA
418
A
SER
419
n
419
SER
419
A
LEU
420
n
420
LEU
420
A
ILE
421
n
421
ILE
421
A
GLY
422
n
422
GLY
422
A
ALA
423
n
423
ALA
423
A
LEU
424
n
424
LEU
424
A
ALA
425
n
425
ALA
425
A
THR
426
n
426
THR
426
A
GLU
427
n
427
GLU
427
A
ASP
428
n
428
ASP
428
A
PRO
429
n
429
PRO
429
A
THR
430
n
430
THR
430
A
THR
431
n
431
THR
431
A
THR
432
n
432
THR
432
A
ILE
433
n
433
ILE
433
A
LEU
434
n
434
LEU
434
A
ILE
435
n
435
ILE
435
A
LYS
436
n
436
LYS
436
A
GLY
437
n
437
GLY
437
A
SER
438
n
438
SER
438
A
ARG
439
n
439
ARG
439
A
SER
440
n
440
SER
440
A
ALA
441
n
441
ALA
441
A
ALA
442
n
442
ALA
442
A
MET
443
n
443
MET
443
A
ASP
444
n
444
ASP
444
A
LYS
445
n
445
LYS
445
A
VAL
446
n
446
VAL
446
A
VAL
447
n
447
VAL
447
A
ALA
448
n
448
ALA
448
A
ALA
449
n
449
ALA
449
A
LEU
450
n
450
LEU
450
A
CYS
451
n
451
CYS
451
A
n
452
452
A
n
453
453
A
n
454
454
A
n
455
455
A
n
456
456
A
n
457
457
A
n
458
458
A
n
459
459
A
n
460
460
A
n
461
461
A
n
462
462
A
n
463
463
A
n
464
464
A
n
465
465
A
n
466
466
A
n
467
467
A
n
468
468
A
n
469
469
A
n
470
470
A
n
471
471
A
n
472
472
A
n
473
473
A
n
474
474
A
n
475
475
A
ALA
1454
n
1
ALA
1454
B
FGA
1455
n
2
FGA
1455
B
API
1456
n
3
API
1456
B
author_and_software_defined_assembly
PISA
2
dimeric
1960
6
17770
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
5
A
N
LEU
5
A
O
PHE
25
A
O
PHE
25
A
N
ILE
19
A
N
ILE
19
A
O
GLN
79
A
O
GLN
79
A
N
LEU
80
A
N
LEU
80
A
O
ALA
66
A
O
ALA
66
A
N
LEU
67
A
N
LEU
67
A
O
PHE
41
A
O
PHE
41
A
N
LEU
40
A
N
LEU
40
A
O
ALA
27
A
O
ALA
27
A
N
LEU
135
A
N
LEU
135
A
O
SER
160
A
O
SER
160
A
N
ILE
163
A
N
ILE
163
A
O
ALA
105
A
O
ALA
105
A
N
ALA
106
A
N
ALA
106
A
O
VAL
184
A
O
VAL
184
A
N
ALA
185
A
N
ALA
185
A
O
THR
220
A
O
THR
220
A
N
LEU
223
A
N
LEU
223
A
O
LEU
243
A
O
LEU
243
A
N
SER
246
A
N
SER
246
A
O
PHE
254
A
O
PHE
254
A
N
GLN
260
A
N
GLN
260
A
O
GLY
268
A
O
GLY
268
A
N
LEU
271
A
N
LEU
271
A
O
ALA
278
A
O
ALA
278
A
N
GLN
327
A
N
GLN
327
A
O
VAL
335
A
O
VAL
335
A
N
ILE
336
A
N
ILE
336
A
O
ILE
433
A
O
ILE
433
A
N
LEU
434
A
N
LEU
434
A
O
VAL
362
A
O
VAL
362
A
N
LEU
363
A
N
LEU
363
A
O
ALA
392
A
O
ALA
392
A
N
ALA
395
A
N
ALA
395
A
O
ARG
412
A
O
ARG
412
1
A
CG
ARG
48
A
CG
ARG
48
1
Y
1
A
CD
ARG
48
A
CD
ARG
48
1
Y
1
A
NE
ARG
48
A
NE
ARG
48
1
Y
1
A
CZ
ARG
48
A
CZ
ARG
48
1
Y
1
A
NH1
ARG
48
A
NH1
ARG
48
1
Y
1
A
NH2
ARG
48
A
NH2
ARG
48
1
Y
1
A
CD
ARG
83
A
CD
ARG
83
1
Y
1
A
NE
ARG
83
A
NE
ARG
83
1
Y
1
A
CZ
ARG
83
A
CZ
ARG
83
1
Y
1
A
NH1
ARG
83
A
NH1
ARG
83
1
Y
1
A
NH2
ARG
83
A
NH2
ARG
83
1
Y
1
A
CG
ARG
138
A
CG
ARG
138
1
Y
1
A
CD
ARG
138
A
CD
ARG
138
1
Y
1
A
NE
ARG
138
A
NE
ARG
138
1
Y
1
A
CZ
ARG
138
A
CZ
ARG
138
1
Y
1
A
NH1
ARG
138
A
NH1
ARG
138
1
Y
1
A
NH2
ARG
138
A
NH2
ARG
138
1
Y
1
A
CG
LYS
203
A
CG
LYS
203
1
Y
1
A
CD
LYS
203
A
CD
LYS
203
1
Y
1
A
CE
LYS
203
A
CE
LYS
203
1
Y
1
A
NZ
LYS
203
A
NZ
LYS
203
1
Y
1
A
CG
GLN
260
A
CG
GLN
260
1
Y
1
A
CD
GLN
260
A
CD
GLN
260
1
Y
1
A
OE1
GLN
260
A
OE1
GLN
260
1
Y
1
A
NE2
GLN
260
A
NE2
GLN
260
1
Y
1
A
CG
ARG
270
A
CG
ARG
270
1
Y
1
A
CD
ARG
270
A
CD
ARG
270
1
Y
1
A
NE
ARG
270
A
NE
ARG
270
1
Y
1
A
CZ
ARG
270
A
CZ
ARG
270
1
Y
1
A
NH1
ARG
270
A
NH1
ARG
270
1
Y
1
A
NH2
ARG
270
A
NH2
ARG
270
1
Y
1
A
CD
LYS
321
A
CD
LYS
321
1
Y
1
A
CE
LYS
321
A
CE
LYS
321
1
Y
1
A
NZ
LYS
321
A
NZ
LYS
321
1
Y
1
A
CD
ARG
412
A
CD
ARG
412
1
Y
1
A
NE
ARG
412
A
NE
ARG
412
1
Y
1
A
CZ
ARG
412
A
CZ
ARG
412
1
Y
1
A
NH1
ARG
412
A
NH1
ARG
412
1
Y
1
A
NH2
ARG
412
A
NH2
ARG
412
1
Y
1
A
CG
ASP
428
A
CG
ASP
428
1
Y
1
A
OD1
ASP
428
A
OD1
ASP
428
1
Y
1
A
OD2
ASP
428
A
OD2
ASP
428
1
Y
1
A
CG
ARG
439
A
CG
ARG
439
1
Y
1
A
CD
ARG
439
A
CD
ARG
439
1
Y
1
A
NE
ARG
439
A
NE
ARG
439
1
Y
1
A
CZ
ARG
439
A
CZ
ARG
439
1
Y
1
A
NH1
ARG
439
A
NH1
ARG
439
1
Y
1
A
NH2
ARG
439
A
NH2
ARG
439
1
Y
1
A
CD
LYS
445
A
CD
LYS
445
1
Y
1
A
CE
LYS
445
A
CE
LYS
445
1
Y
1
A
NZ
LYS
445
A
NZ
LYS
445
1
Y
1
A
ASP
74
A
ASP
74
1
Y
1
A
GLY
191
A
GLY
191
1
Y
1
A
THR
192
A
THR
192
1
Y
1
A
ALA
193
A
ALA
193
1
Y
1
A
HIS
194
A
HIS
194
1
Y
1
A
VAL
195
A
VAL
195
1
Y
1
A
GLY
196
A
GLY
196
1
Y
1
A
GLU
197
A
GLU
197
1
Y
1
A
GLU
370
A
GLU
370
1
Y
1
A
LEU
371
A
LEU
371
1
Y
1
A
GLY
372
A
GLY
372
1
Y
1
A
SER
373
A
SER
373
1
Y
1
A
TRP
374
A
TRP
374
1
Y
1
A
GLY
452
A
GLY
452
1
Y
1
A
SER
453
A
SER
453
1
Y
1
A
SER
454
A
SER
454
1
Y
1
A
GLU
455
A
GLU
455
1
Y
1
A
GLU
456
A
GLU
456
1
Y
1
A
SER
457
A
SER
457
1
Y
1
A
HIS
458
A
HIS
458
1
Y
1
A
SER
459
A
SER
459
1
Y
1
A
SER
460
A
SER
460
1
Y
1
A
VAL
461
A
VAL
461
1
Y
1
A
ASP
462
A
ASP
462
1
Y
1
A
LYS
463
A
LYS
463
1
Y
1
A
LEU
464
A
LEU
464
1
Y
1
A
ALA
465
A
ALA
465
1
Y
1
A
ALA
466
A
ALA
466
1
Y
1
A
ALA
467
A
ALA
467
1
Y
1
A
LEU
468
A
LEU
468
1
Y
1
A
GLU
469
A
GLU
469
1
Y
1
A
HIS
470
A
HIS
470
1
Y
1
A
HIS
471
A
HIS
471
1
Y
1
A
HIS
472
A
HIS
472
1
Y
1
A
HIS
473
A
HIS
473
1
Y
1
A
HIS
474
A
HIS
474
1
Y
1
A
HIS
475
A
HIS
475
1
Y
1
A
A
C
N
THR
THR
114
115
1.20
1
-16.58
2.30
115.30
98.72
A
A
A
CA
CB
CG
LEU
LEU
LEU
2
2
2
N
1
A
A
C
N
THR
THR
114
115
-0.140
0.023
1.336
1.196
Y
1
A
ALA
34
-150.04
71.75
1
A
SER
110
-72.37
-163.51
1
A
ASN
143
-101.97
-168.49
1
A
ASN
189
176.26
167.72
1
A
ALA
342
-172.56
143.76
1
A
THR
430
84.88
-13.15
23.304
-0.99
0.00
0.00
1.47
0.00
-0.48
0.944
0.932
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY
0.22562
0.19568
0.19717
1.92
49.04
1804
34360
5.0
99.04
3.766
0.106
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.151
0.137
0.80
0.80
1.20
PDB ENTRY 1GG4
MAXIMUM LIKELIHOOD
MASK
1.92
49.04
84
3290
70
0
3136
0.012
0.019
3255
0.002
0.020
3192
1.558
1.999
4431
0.864
3.007
7293
6.030
5.000
436
30.346
23.846
117
12.920
15.000
491
14.669
15.000
23
0.093
0.200
542
0.007
0.021
3731
0.001
0.020
688
1.530
2.249
1756
1.529
2.249
1756
2.262
3.357
2188
2.164
2.468
1499
0.311
0.260
1.970
159
2485
20
99.62
1.92
49.04
4CVK
36216
2.4
0.09
1
13.20
4.7
99.3
0.59
1.92
1.97
2.40
1
4.5
99.8
refinement
REFMAC
5.8.0049
data reduction
xia2
data scaling
xia2
phasing
PHASER
PaMurF in complex with UDP-MurNAc-tripeptide (mDAP)
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
LEU
10
A
LEU
10
HELX_P
A
ASP
15
A
ASP
15
1
1
6
A
GLY
51
A
GLY
51
HELX_P
A
ASP
53
A
ASP
53
5
2
3
A
TYR
54
A
TYR
54
HELX_P
A
LYS
61
A
LYS
61
1
3
8
A
ASP
84
A
ASP
84
HELX_P
A
PHE
100
A
PHE
100
1
4
17
A
SER
111
A
SER
111
HELX_P
A
GLY
129
A
GLY
129
1
5
19
A
ASP
130
A
ASP
130
HELX_P
A
GLU
132
A
GLU
132
5
6
3
A
LEU
145
A
LEU
145
HELX_P
A
GLN
153
A
GLN
153
1
7
9
A
GLY
171
A
GLY
171
HELX_P
A
ARG
181
A
ARG
181
1
8
11
A
GLY
200
A
GLY
200
HELX_P
A
GLU
210
A
GLU
210
1
9
11
A
ILE
211
A
ILE
211
HELX_P
A
LEU
215
A
LEU
215
5
10
5
A
ALA
229
A
ALA
229
HELX_P
A
ALA
237
A
ALA
237
1
11
9
A
GLY
286
A
GLY
286
HELX_P
A
LEU
303
A
LEU
303
1
12
18
A
PRO
306
A
PRO
306
HELX_P
A
LEU
317
A
LEU
317
1
13
12
A
ASN
343
A
ASN
343
HELX_P
A
GLY
356
A
GLY
356
1
14
14
A
ALA
375
A
ALA
375
HELX_P
A
ALA
387
A
ALA
387
1
15
13
A
LEU
399
A
LEU
399
HELX_P
A
GLY
408
A
GLY
408
1
16
10
A
ASP
416
A
ASP
416
HELX_P
A
ALA
425
A
ALA
425
1
17
10
A
SER
438
A
SER
438
HELX_P
A
ALA
442
A
ALA
442
5
18
5
A
MET
443
A
MET
443
HELX_P
A
CYS
451
A
CYS
451
1
19
9
covale
1.618
both
A
UDP
1452
C
PB
UDP
1_555
A
MUB
1453
D
O1
MUB
1_555
covale
1.324
one
A
MUB
1453
D
C10
MUB
1_555
B
ALA
1454
B
N
ALA
1
1_555
covale
1.365
both
B
ALA
1454
B
C
ALA
1
1_555
B
FGA
1455
B
N
FGA
2
1_555
covale
1.355
both
B
FGA
1455
B
CD
FGA
2
1_555
B
API
1456
B
N
API
3
1_555
LIGASE
LIGASE, MURF, TRIPEPTIDE
Q9HVZ7_PSEAE
UNP
1
1
Q9HVZ7
MLEPLRLSQLTVALDARLIGEDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAALVEREVADAPLPQL
LVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRS
AVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGR
PLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPV
KGRAVAQLTASGLRVIDDSYNANPASMLAAIDILSGFSGRTVLVLGDMGELGSWAEQAHREVGAYAAGKVSALYAVGPLM
AHAVQAFGATGRHFADQASLIGALATEQPTTTILIKGSRSAAMDKVVAALCGSSEESH
4CVK
PDB
2
1
4CVK
1
458
4CVK
1
458
Q9HVZ7
A
1
1
458
1454
1456
4CVK
1454
1456
4CVK
B
2
1
3
1
GLN
conflict
GLU
39
4CVK
A
Q9HVZ7
UNP
39
39
1
GLN
conflict
ASP
428
4CVK
A
Q9HVZ7
UNP
428
428
1
expression tag
SER
459
4CVK
A
Q9HVZ7
UNP
459
1
expression tag
SER
460
4CVK
A
Q9HVZ7
UNP
460
1
expression tag
VAL
461
4CVK
A
Q9HVZ7
UNP
461
1
expression tag
ASP
462
4CVK
A
Q9HVZ7
UNP
462
1
expression tag
LYS
463
4CVK
A
Q9HVZ7
UNP
463
1
expression tag
LEU
464
4CVK
A
Q9HVZ7
UNP
464
1
expression tag
ALA
465
4CVK
A
Q9HVZ7
UNP
465
1
expression tag
ALA
466
4CVK
A
Q9HVZ7
UNP
466
1
expression tag
ALA
467
4CVK
A
Q9HVZ7
UNP
467
1
expression tag
LEU
468
4CVK
A
Q9HVZ7
UNP
468
1
expression tag
GLU
469
4CVK
A
Q9HVZ7
UNP
469
1
expression tag
HIS
470
4CVK
A
Q9HVZ7
UNP
470
1
expression tag
HIS
471
4CVK
A
Q9HVZ7
UNP
471
1
expression tag
HIS
472
4CVK
A
Q9HVZ7
UNP
472
1
expression tag
HIS
473
4CVK
A
Q9HVZ7
UNP
473
1
expression tag
HIS
474
4CVK
A
Q9HVZ7
UNP
474
1
expression tag
HIS
475
4CVK
A
Q9HVZ7
UNP
475
2
5
9
6
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
A
LEU
5
A
LEU
5
A
ARG
6
A
ARG
6
A
VAL
24
A
VAL
24
A
PHE
25
A
PHE
25
A
ARG
17
A
ARG
17
A
ILE
19
A
ILE
19
A
GLN
79
A
GLN
79
A
LEU
81
A
LEU
81
A
ALA
65
A
ALA
65
A
VAL
68
A
VAL
68
A
GLU
39
A
GLU
39
A
ILE
42
A
ILE
42
A
ALA
27
A
ALA
27
A
SER
29
A
SER
29
A
VAL
134
A
VAL
134
A
ALA
136
A
ALA
136
A
SER
160
A
SER
160
A
GLU
164
A
GLU
164
A
LEU
104
A
LEU
104
A
THR
108
A
THR
108
A
VAL
184
A
VAL
184
A
ILE
187
A
ILE
187
A
THR
220
A
THR
220
A
ASN
224
A
ASN
224
A
LEU
242
A
LEU
242
A
SER
246
A
SER
246
A
PHE
254
A
PHE
254
A
ARG
261
A
ARG
261
A
MET
267
A
MET
267
A
GLY
273
A
GLY
273
A
ALA
278
A
ALA
278
A
GLN
281
A
GLN
281
A
VAL
325
A
VAL
325
A
LEU
328
A
LEU
328
A
ARG
334
A
ARG
334
A
ASP
338
A
ASP
338
A
THR
432
A
THR
432
A
LYS
436
A
LYS
436
A
THR
361
A
THR
361
A
GLY
366
A
GLY
366
A
ALA
392
A
ALA
392
A
VAL
396
A
VAL
396
A
ARG
412
A
ARG
412
A
PHE
414
A
PHE
414
19
P 21 21 21