0.021467
0.000000
0.000000
0.000000
0.020536
0.000000
0.000000
0.000000
0.015414
0.00000
0.00000
0.00000
Blaber, M.
Longo, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
46.584
48.696
64.876
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
N
N
9
N
C
N
10
N
N
N
11
N
N
N
12
N
O
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
N
N
29
S
C
N
30
N
C
N
31
N
O
N
32
N
C
N
33
N
C
N
34
N
O
N
35
N
N
N
36
N
O
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
N
N
46
S
C
N
47
N
C
N
48
N
O
N
49
N
C
N
50
N
C
N
51
N
O
N
52
N
O
N
53
N
O
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
N
N
62
S
C
N
63
N
C
N
64
N
O
N
65
N
C
N
66
N
C
N
67
N
C
N
68
N
O
N
69
N
N
N
70
N
O
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
S
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
O
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
Y
115
N
C
Y
116
N
N
Y
117
N
C
Y
118
N
C
Y
119
N
N
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
S
C
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
O
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
S
N
210
N
O
N
211
N
O
N
212
N
O
N
213
N
O
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
R
C
N
219
N
O
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
N
N
236
N
O
N
237
N
O
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
doub
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
doub
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
doub
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
Y
115
N
sing
Y
116
N
doub
Y
117
N
doub
N
118
N
sing
Y
119
N
sing
N
120
N
sing
Y
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
110
2135
2139
10.1073/pnas.1219530110
23341608
Simplified protein design biased for prebiotic amino acids yields a foldable, halophilic protein.
2013
10.2210/pdb4d8h/pdb
pdb_00004d8h
100
1
Osmic Confocal Mirrors
IMAGE PLATE
2011-12-10
RIGAKU RAXIS IV++
Multi-layer mirrors
SINGLE WAVELENGTH
x-ray
1
1.541
1.0
1.541
ROTATING ANODE
RIGAKU
F22L/F44L/F64L/F85L/F108L/F132L hisSymfoil-4P/PV1 (6xLeu PV1) de novo designed beta-trefoil architecture with symmetric primary structure enriched for pre-biotic amino acids
14322.552
de novo protein
1
man
polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
1
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
177
nat
water
no
no
HHHHHHEVLLRSTETGQLLRINPDGTVDGTRDRSDPGIQLQISPEGNGEVLLRSTETGQLLRINPDGTVDGTRDRSDPGI
QLQISPEGNGEVLLRSTETGQLLRINPDGTVDGTRDRSDPGIQLQISPEGNG
HHHHHHEVLLRSTETGQLLRINPDGTVDGTRDRSDPGIQLQISPEGNGEVLLRSTETGQLLRINPDGTVDGTRDRSDPGI
QLQISPEGNGEVLLRSTETGQLLRINPDGTVDGTRDRSDPGIQLQISPEGNG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Synthetic sequence derived from human acidic fibroblast growth factor with symmetric deconstruction method and enriched for pre-biotic amino acids.
sample
Synthetic sequence derived from human acidic fibroblast growth factor with symmetric deconstruction method and enriched for pre-biotic amino acids.
32630
Synthetic
562
Escherichia coli
BL21(DE3)
plasmid
pET21a(+)
1
2.57
52.12
VAPOR DIFFUSION, HANGING DROP
7.0
~15 mg/mL protein concentration, 1.5 M (NH4)2SO4, 0.11 M Li2SO4, 0.1 M Tris, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Database references
Database references
Structure summary
Data collection
Database references
Derived calculations
1
0
2013-01-16
1
1
2013-02-06
1
2
2013-05-22
1
3
2013-12-18
1
4
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Human acidic fibroblast growth factor. 141 amino acid form with N-terminal His tag.
RCSB
Y
RCSB
2012-01-10
REL
REL
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
SO4
SULFATE ION
HOH
water
TRS
138
2
TRS
TRS
201
A
SO4
139
3
SO4
SO4
202
A
HOH
140
4
HOH
HOH
301
A
HOH
141
4
HOH
HOH
302
A
HOH
142
4
HOH
HOH
303
A
HOH
143
4
HOH
HOH
304
A
HOH
144
4
HOH
HOH
305
A
HOH
145
4
HOH
HOH
306
A
HOH
146
4
HOH
HOH
307
A
HOH
147
4
HOH
HOH
308
A
HOH
148
4
HOH
HOH
309
A
HOH
149
4
HOH
HOH
310
A
HOH
150
4
HOH
HOH
311
A
HOH
151
4
HOH
HOH
312
A
HOH
152
4
HOH
HOH
313
A
HOH
153
4
HOH
HOH
314
A
HOH
154
4
HOH
HOH
315
A
HOH
155
4
HOH
HOH
316
A
HOH
156
4
HOH
HOH
317
A
HOH
157
4
HOH
HOH
318
A
HOH
158
4
HOH
HOH
319
A
HOH
159
4
HOH
HOH
320
A
HOH
160
4
HOH
HOH
321
A
HOH
161
4
HOH
HOH
322
A
HOH
162
4
HOH
HOH
323
A
HOH
163
4
HOH
HOH
324
A
HOH
164
4
HOH
HOH
325
A
HOH
165
4
HOH
HOH
326
A
HOH
167
4
HOH
HOH
327
A
HOH
168
4
HOH
HOH
328
A
HOH
169
4
HOH
HOH
329
A
HOH
170
4
HOH
HOH
330
A
HOH
171
4
HOH
HOH
331
A
HOH
172
4
HOH
HOH
332
A
HOH
173
4
HOH
HOH
333
A
HOH
174
4
HOH
HOH
334
A
HOH
175
4
HOH
HOH
335
A
HOH
176
4
HOH
HOH
336
A
HOH
177
4
HOH
HOH
337
A
HOH
178
4
HOH
HOH
338
A
HOH
179
4
HOH
HOH
339
A
HOH
180
4
HOH
HOH
340
A
HOH
181
4
HOH
HOH
341
A
HOH
182
4
HOH
HOH
342
A
HOH
183
4
HOH
HOH
343
A
HOH
184
4
HOH
HOH
344
A
HOH
185
4
HOH
HOH
345
A
HOH
186
4
HOH
HOH
346
A
HOH
187
4
HOH
HOH
347
A
HOH
188
4
HOH
HOH
348
A
HOH
189
4
HOH
HOH
349
A
HOH
190
4
HOH
HOH
350
A
HOH
191
4
HOH
HOH
351
A
HOH
192
4
HOH
HOH
352
A
HOH
193
4
HOH
HOH
353
A
HOH
194
4
HOH
HOH
354
A
HOH
195
4
HOH
HOH
355
A
HOH
196
4
HOH
HOH
356
A
HOH
197
4
HOH
HOH
357
A
HOH
198
4
HOH
HOH
358
A
HOH
199
4
HOH
HOH
359
A
HOH
200
4
HOH
HOH
360
A
HOH
201
4
HOH
HOH
361
A
HOH
202
4
HOH
HOH
362
A
HOH
203
4
HOH
HOH
363
A
HOH
204
4
HOH
HOH
364
A
HOH
205
4
HOH
HOH
365
A
HOH
206
4
HOH
HOH
366
A
HOH
207
4
HOH
HOH
367
A
HOH
208
4
HOH
HOH
368
A
HOH
209
4
HOH
HOH
369
A
HOH
210
4
HOH
HOH
370
A
HOH
211
4
HOH
HOH
371
A
HOH
212
4
HOH
HOH
372
A
HOH
213
4
HOH
HOH
373
A
HOH
214
4
HOH
HOH
374
A
HOH
215
4
HOH
HOH
375
A
HOH
216
4
HOH
HOH
376
A
HOH
217
4
HOH
HOH
377
A
HOH
218
4
HOH
HOH
378
A
HOH
219
4
HOH
HOH
379
A
HOH
220
4
HOH
HOH
380
A
HOH
221
4
HOH
HOH
381
A
HOH
222
4
HOH
HOH
382
A
HOH
223
4
HOH
HOH
383
A
HOH
224
4
HOH
HOH
384
A
HOH
225
4
HOH
HOH
385
A
HOH
226
4
HOH
HOH
386
A
HOH
227
4
HOH
HOH
387
A
HOH
228
4
HOH
HOH
388
A
HOH
229
4
HOH
HOH
389
A
HOH
230
4
HOH
HOH
390
A
HOH
231
4
HOH
HOH
391
A
HOH
232
4
HOH
HOH
392
A
HOH
233
4
HOH
HOH
393
A
HOH
234
4
HOH
HOH
394
A
HOH
235
4
HOH
HOH
395
A
HOH
236
4
HOH
HOH
396
A
HOH
237
4
HOH
HOH
397
A
HOH
238
4
HOH
HOH
398
A
HOH
239
4
HOH
HOH
399
A
HOH
240
4
HOH
HOH
400
A
HOH
241
4
HOH
HOH
401
A
HOH
242
4
HOH
HOH
402
A
HOH
243
4
HOH
HOH
403
A
HOH
244
4
HOH
HOH
404
A
HOH
245
4
HOH
HOH
405
A
HOH
246
4
HOH
HOH
406
A
HOH
247
4
HOH
HOH
407
A
HOH
248
4
HOH
HOH
408
A
HOH
249
4
HOH
HOH
409
A
HOH
250
4
HOH
HOH
410
A
HOH
251
4
HOH
HOH
411
A
HOH
252
4
HOH
HOH
412
A
HOH
253
4
HOH
HOH
413
A
HOH
254
4
HOH
HOH
414
A
HOH
255
4
HOH
HOH
415
A
HOH
256
4
HOH
HOH
416
A
HOH
257
4
HOH
HOH
417
A
HOH
258
4
HOH
HOH
418
A
HOH
259
4
HOH
HOH
419
A
HOH
260
4
HOH
HOH
420
A
HOH
261
4
HOH
HOH
421
A
HOH
262
4
HOH
HOH
422
A
HOH
263
4
HOH
HOH
423
A
HOH
264
4
HOH
HOH
424
A
HOH
265
4
HOH
HOH
425
A
HOH
266
4
HOH
HOH
426
A
HOH
267
4
HOH
HOH
427
A
HOH
268
4
HOH
HOH
428
A
HOH
269
4
HOH
HOH
429
A
HOH
270
4
HOH
HOH
430
A
HOH
271
4
HOH
HOH
431
A
HOH
272
4
HOH
HOH
432
A
HOH
273
4
HOH
HOH
433
A
HOH
274
4
HOH
HOH
434
A
HOH
275
4
HOH
HOH
435
A
HOH
276
4
HOH
HOH
436
A
HOH
277
4
HOH
HOH
437
A
HOH
278
4
HOH
HOH
438
A
HOH
279
4
HOH
HOH
439
A
HOH
280
4
HOH
HOH
440
A
HOH
281
4
HOH
HOH
441
A
HOH
282
4
HOH
HOH
442
A
HOH
283
4
HOH
HOH
443
A
HOH
284
4
HOH
HOH
444
A
HOH
285
4
HOH
HOH
445
A
HOH
286
4
HOH
HOH
446
A
HOH
287
4
HOH
HOH
447
A
HOH
288
4
HOH
HOH
448
A
HOH
289
4
HOH
HOH
449
A
HOH
290
4
HOH
HOH
450
A
HOH
291
4
HOH
HOH
451
A
HOH
292
4
HOH
HOH
452
A
HOH
293
4
HOH
HOH
453
A
HOH
294
4
HOH
HOH
454
A
HOH
295
4
HOH
HOH
455
A
HOH
296
4
HOH
HOH
456
A
HOH
297
4
HOH
HOH
457
A
HOH
298
4
HOH
HOH
458
A
HOH
299
4
HOH
HOH
459
A
HOH
300
4
HOH
HOH
460
A
HOH
301
4
HOH
HOH
461
A
HOH
302
4
HOH
HOH
462
A
HOH
303
4
HOH
HOH
463
A
HOH
304
4
HOH
HOH
464
A
HOH
305
4
HOH
HOH
465
A
HOH
306
4
HOH
HOH
466
A
HOH
307
4
HOH
HOH
467
A
HOH
308
4
HOH
HOH
468
A
HOH
309
4
HOH
HOH
469
A
HOH
310
4
HOH
HOH
470
A
HOH
311
4
HOH
HOH
471
A
HOH
312
4
HOH
HOH
472
A
HOH
313
4
HOH
HOH
473
A
HOH
314
4
HOH
HOH
474
A
HOH
315
4
HOH
HOH
475
A
HOH
316
4
HOH
HOH
476
A
HOH
317
4
HOH
HOH
477
A
n
1
-5
A
n
2
-4
A
n
3
-3
A
n
4
-2
A
n
5
-1
A
HIS
1
n
6
HIS
0
A
GLU
11
n
7
GLU
11
A
VAL
12
n
8
VAL
12
A
LEU
13
n
9
LEU
13
A
LEU
14
n
10
LEU
14
A
ARG
15
n
11
ARG
15
A
SER
16
n
12
SER
16
A
THR
17
n
13
THR
17
A
GLU
18
n
14
GLU
18
A
THR
19
n
15
THR
19
A
GLY
20
n
16
GLY
20
A
GLN
21
n
17
GLN
21
A
LEU
22
n
18
LEU
22
A
LEU
23
n
19
LEU
23
A
ARG
24
n
20
ARG
24
A
ILE
25
n
21
ILE
25
A
ASN
26
n
22
ASN
26
A
PRO
27
n
23
PRO
27
A
ASP
28
n
24
ASP
28
A
GLY
29
n
25
GLY
29
A
THR
30
n
26
THR
30
A
VAL
31
n
27
VAL
31
A
ASP
32
n
28
ASP
32
A
GLY
33
n
29
GLY
33
A
THR
34
n
30
THR
34
A
ARG
35
n
31
ARG
35
A
ASP
36
n
32
ASP
36
A
ARG
37
n
33
ARG
37
A
SER
38
n
34
SER
38
A
ASP
39
n
35
ASP
39
A
PRO
40
n
36
PRO
40
A
GLY
41
n
37
GLY
41
A
ILE
42
n
38
ILE
42
A
GLN
43
n
39
GLN
43
A
LEU
44
n
40
LEU
44
A
GLN
45
n
41
GLN
45
A
ILE
46
n
42
ILE
46
A
SER
47
n
43
SER
47
A
PRO
48
n
44
PRO
48
A
GLU
49
n
45
GLU
49
A
GLY
50
n
46
GLY
50
A
ASN
51
n
47
ASN
51
A
GLY
52
n
48
GLY
52
A
GLU
53
n
49
GLU
53
A
VAL
54
n
50
VAL
54
A
LEU
55
n
51
LEU
55
A
LEU
56
n
52
LEU
56
A
ARG
57
n
53
ARG
57
A
SER
58
n
54
SER
58
A
THR
59
n
55
THR
59
A
GLU
60
n
56
GLU
60
A
THR
61
n
57
THR
61
A
GLY
62
n
58
GLY
62
A
GLN
63
n
59
GLN
63
A
LEU
64
n
60
LEU
64
A
LEU
65
n
61
LEU
65
A
ARG
66
n
62
ARG
66
A
ILE
67
n
63
ILE
67
A
ASN
68
n
64
ASN
68
A
PRO
69
n
65
PRO
69
A
ASP
70
n
66
ASP
70
A
GLY
71
n
67
GLY
71
A
THR
72
n
68
THR
72
A
VAL
73
n
69
VAL
73
A
ASP
74
n
70
ASP
74
A
GLY
75
n
71
GLY
75
A
THR
76
n
72
THR
76
A
ARG
476
n
73
A
ARG
76
A
ASP
77
n
74
ASP
77
A
ARG
78
n
75
ARG
78
A
SER
79
n
76
SER
79
A
ASP
80
n
77
ASP
80
A
PRO
81
n
78
PRO
81
A
GLY
82
n
79
GLY
82
A
ILE
83
n
80
ILE
83
A
GLN
84
n
81
GLN
84
A
LEU
85
n
82
LEU
85
A
GLN
86
n
83
GLN
86
A
ILE
87
n
84
ILE
87
A
SER
88
n
85
SER
88
A
PRO
89
n
86
PRO
89
A
GLU
90
n
87
GLU
90
A
GLY
91
n
88
GLY
91
A
ASN
92
n
89
ASN
92
A
GLY
93
n
90
GLY
93
A
GLU
94
n
91
GLU
94
A
VAL
95
n
92
VAL
95
A
LEU
96
n
93
LEU
96
A
LEU
97
n
94
LEU
97
A
ARG
98
n
95
ARG
98
A
SER
99
n
96
SER
99
A
THR
100
n
97
THR
100
A
GLU
101
n
98
GLU
101
A
THR
102
n
99
THR
102
A
GLY
103
n
100
GLY
103
A
GLN
107
n
101
GLN
107
A
LEU
108
n
102
LEU
108
A
LEU
109
n
103
LEU
109
A
ARG
110
n
104
ARG
110
A
ILE
111
n
105
ILE
111
A
ASN
112
n
106
ASN
112
A
PRO
113
n
107
PRO
113
A
ASP
114
n
108
ASP
114
A
GLY
115
n
109
GLY
115
A
THR
116
n
110
THR
116
A
VAL
117
n
111
VAL
117
A
ASP
118
n
112
ASP
118
A
GLY
119
n
113
GLY
119
A
THR
123
n
114
THR
123
A
ARG
423
n
115
A
ARG
123
A
ASP
124
n
116
ASP
124
A
ARG
125
n
117
ARG
125
A
SER
126
n
118
SER
126
A
ASP
127
n
119
ASP
127
A
PRO
128
n
120
PRO
128
A
GLY
129
n
121
GLY
129
A
ILE
130
n
122
ILE
130
A
GLN
131
n
123
GLN
131
A
LEU
132
n
124
LEU
132
A
GLN
133
n
125
GLN
133
A
ILE
134
n
126
ILE
134
A
SER
135
n
127
SER
135
A
PRO
136
n
128
PRO
136
A
GLU
137
n
129
GLU
137
A
n
130
138
A
n
131
139
A
n
132
140
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
13
A
N
LEU
9
A
O
SER
135
A
O
SER
127
A
O
LEU
132
A
O
LEU
124
A
N
VAL
95
A
N
VAL
92
A
O
GLU
94
A
O
GLU
91
A
N
GLU
90
A
N
GLU
87
A
N
LEU
22
A
N
LEU
18
A
O
THR
34
A
O
THR
30
A
N
GLU
49
A
N
GLU
45
A
O
GLU
53
A
O
GLU
49
A
N
LEU
64
A
N
LEU
60
A
O
THR
76
A
O
THR
72
A
N
LEU
108
A
N
LEU
102
A
O
THR
123
A
O
THR
114
1
A
HIS
-5
A
HIS
1
1
Y
1
A
HIS
-4
A
HIS
2
1
Y
1
A
HIS
-3
A
HIS
3
1
Y
1
A
HIS
-2
A
HIS
4
1
Y
1
A
HIS
-1
A
HIS
5
1
Y
1
A
GLY
138
A
GLY
130
1
Y
1
A
ASN
139
A
ASN
131
1
Y
1
A
GLY
140
A
GLY
132
1
Y
64.540
20.2147
6.220
0.0261
-0.0000
0.0000
-1.2013
-0.0000
1.1752
0.2139
0.1647
0.1671
1.9010
19.9900
579
12143
11533
5.0200
95.2400
1.000
0.380
0.8945
0.4300
Random 5%
1
2.010
MOLECULAR REPLACEMENT
16.9400
0.8600
1.1000
ML
FLAT BULK SOLVENT MODEL
41.4560
0.3740
1.9010
19.9900
177
1129
13
0
939
0.006
998
1.066
1361
0.071
154
0.006
192
15.639
399
0.2711
0.2011
2.0919
136
2414
2550
4
86.0000
0.1895
0.1413
2.3942
140
2778
2918
4
98.0000
0.2206
0.1543
3.0147
146
2819
2965
4
98.0000
0.2061
0.1712
19.9909
157
2943
3100
4
99.0000
1.900
20.000
4D8H
12143
11803
3
3
0.095
1.913
1
11.200
12.300
97.200
0.342
1.900
1.960
756
0.753
1
5.800
76.200
0.278
1.960
2.020
911
0.840
1
8.100
91.500
0.248
2.020
2.090
972
1.015
1
11.500
99.000
0.200
2.090
2.170
991
1.093
1
13.300
100.000
0.173
2.170
2.270
993
1.219
1
13.600
100.000
0.144
2.270
2.390
1007
1.349
1
13.600
100.000
0.138
2.390
2.540
984
1.465
1
13.700
100.000
0.118
2.540
2.740
1019
1.757
1
13.600
99.900
0.103
2.740
3.010
1011
2.017
1
13.600
99.700
0.081
3.010
3.450
1015
2.626
1
13.300
99.700
0.068
3.450
4.340
1034
3.238
1
13.000
99.400
0.059
4.340
20.000
1110
3.989
1
12.800
100.000
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.7.2_869
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
CrystalClear
data reduction
DENZO
phasing
PHASES
Crystal structure of Symfoil-4P/PV2: de novo designed beta-trefoil architecture with symmetric primary structure, primitive version 2 (6xLeu / PV1)
1
N
N
2
N
N
3
N
N
4
N
N
A
ASP
39
A
ASP
35
HELX_P
A
ILE
42
A
ILE
38
5
1
4
A
ASP
80
A
ASP
77
HELX_P
A
ILE
83
A
ILE
80
5
2
4
A
ASP
127
A
ASP
119
HELX_P
A
ILE
130
A
ILE
122
5
3
4
DE NOVO PROTEIN
beta-trefoil, symmetric, pre-biotic, Symfoil, DE NOVO PROTEIN
4D8H
PDB
1
1
4D8H
HHHHHHEVLLRSTETGQLLRINPDGTVDGTRDRSDPGIQLQISPEGNGEVLLRSTETGQLLRINPDGTVDGTRDRSDPGI
QLQISPEGNGEVLLRSTETGQLLRINPDGTVDGTRDRSDPGIQLQISPEGNG
-5
140
4D8H
-5
140
4D8H
A
1
1
132
4
2
2
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
12
A
VAL
8
A
SER
16
A
SER
12
A
LEU
132
A
LEU
124
A
PRO
136
A
PRO
128
A
GLU
94
A
GLU
91
A
SER
99
A
SER
96
A
LEU
85
A
LEU
82
A
GLY
91
A
GLY
88
A
LEU
22
A
LEU
18
A
ILE
25
A
ILE
21
A
VAL
31
A
VAL
27
A
THR
34
A
THR
30
A
LEU
44
A
LEU
40
A
GLY
50
A
GLY
46
A
GLU
53
A
GLU
49
A
SER
58
A
SER
54
A
LEU
64
A
LEU
60
A
ILE
67
A
ILE
63
A
VAL
73
A
VAL
69
A
THR
76
A
THR
72
A
LEU
108
A
LEU
102
A
ILE
111
A
ILE
105
A
VAL
117
A
VAL
111
A
THR
123
A
THR
114
BINDING SITE FOR RESIDUE TRS A 201
A
TRS
201
Software
9
BINDING SITE FOR RESIDUE SO4 A 202
A
SO4
202
Software
7
A
THR
30
A
THR
26
9
1_555
A
VAL
31
A
VAL
27
9
1_555
A
THR
72
A
THR
68
9
1_555
A
VAL
73
A
VAL
69
9
1_555
A
THR
116
A
THR
110
9
1_555
A
VAL
117
A
VAL
111
9
1_555
A
HOH
312
D
HOH
9
1_555
A
HOH
315
D
HOH
9
1_555
A
HOH
316
D
HOH
9
1_555
A
ARG
66
A
ARG
62
7
1_555
A
ARG
123
A
ARG
115
A
7
3_545
A
ARG
125
A
ARG
117
7
3_545
A
HOH
305
D
HOH
7
1_555
A
HOH
309
D
HOH
7
1_555
A
HOH
408
D
HOH
7
3_545
A
HOH
474
D
HOH
7
3_545
19
P 21 21 21