0.021467 0.000000 0.000000 0.000000 0.020536 0.000000 0.000000 0.000000 0.015414 0.00000 0.00000 0.00000 Blaber, M. Longo, L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 46.584 48.696 64.876 C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C4 H12 N O3 1 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRIS BUFFER non-polymer C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N C N 8 N N N 9 N C N 10 N N N 11 N N N 12 N O N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N N N 29 S C N 30 N C N 31 N O N 32 N C N 33 N C N 34 N O N 35 N N N 36 N O N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N N N 46 S C N 47 N C N 48 N O N 49 N C N 50 N C N 51 N O N 52 N O N 53 N O N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N N N 62 S C N 63 N C N 64 N O N 65 N C N 66 N C N 67 N C N 68 N O N 69 N N N 70 N O N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 S C N 83 N C N 84 N O N 85 N C N 86 N C N 87 N C N 88 N O N 89 N O N 90 N O N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N N N 101 N C N 102 N C N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N N N 111 S C N 112 N C N 113 N O N 114 N C Y 115 N C Y 116 N N Y 117 N C Y 118 N C Y 119 N N N 120 N O N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N O N 132 N H N 133 N H N 134 N N N 135 S C N 136 N C N 137 N O N 138 S C N 139 N C N 140 N C N 141 N C N 142 N O N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 S C N 158 N C N 159 N O N 160 N C N 161 N C N 162 N C N 163 N C N 164 N O N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N N N 179 S C N 180 N C N 181 N O N 182 N C N 183 N C N 184 N C N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C N 200 N O N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N S N 210 N O N 211 N O N 212 N O N 213 N O N 214 N N N 215 S C N 216 N C N 217 N O N 218 R C N 219 N O N 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N C N 232 N C N 233 N C N 234 N C N 235 N N N 236 N O N 237 N O N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N doub N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N doub N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N doub N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing Y 115 N sing Y 116 N doub Y 117 N doub N 118 N sing Y 119 N sing N 120 N sing Y 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N doub N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 110 2135 2139 10.1073/pnas.1219530110 23341608 Simplified protein design biased for prebiotic amino acids yields a foldable, halophilic protein. 2013 10.2210/pdb4d8h/pdb pdb_00004d8h 100 1 Osmic Confocal Mirrors IMAGE PLATE 2011-12-10 RIGAKU RAXIS IV++ Multi-layer mirrors SINGLE WAVELENGTH x-ray 1 1.541 1.0 1.541 ROTATING ANODE RIGAKU F22L/F44L/F64L/F85L/F108L/F132L hisSymfoil-4P/PV1 (6xLeu PV1) de novo designed beta-trefoil architecture with symmetric primary structure enriched for pre-biotic amino acids 14322.552 de novo protein 1 man polymer 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 177 nat water no no HHHHHHEVLLRSTETGQLLRINPDGTVDGTRDRSDPGIQLQISPEGNGEVLLRSTETGQLLRINPDGTVDGTRDRSDPGI QLQISPEGNGEVLLRSTETGQLLRINPDGTVDGTRDRSDPGIQLQISPEGNG HHHHHHEVLLRSTETGQLLRINPDGTVDGTRDRSDPGIQLQISPEGNGEVLLRSTETGQLLRINPDGTVDGTRDRSDPGI QLQISPEGNGEVLLRSTETGQLLRINPDGTVDGTRDRSDPGIQLQISPEGNG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Synthetic sequence derived from human acidic fibroblast growth factor with symmetric deconstruction method and enriched for pre-biotic amino acids. sample Synthetic sequence derived from human acidic fibroblast growth factor with symmetric deconstruction method and enriched for pre-biotic amino acids. 32630 Synthetic 562 Escherichia coli BL21(DE3) plasmid pET21a(+) 1 2.57 52.12 VAPOR DIFFUSION, HANGING DROP 7.0 ~15 mg/mL protein concentration, 1.5 M (NH4)2SO4, 0.11 M Li2SO4, 0.1 M Tris, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Database references Database references Structure summary Data collection Database references Derived calculations 1 0 2013-01-16 1 1 2013-02-06 1 2 2013-05-22 1 3 2013-12-18 1 4 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Human acidic fibroblast growth factor. 141 amino acid form with N-terminal His tag. RCSB Y RCSB 2012-01-10 REL REL TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL SO4 SULFATE ION HOH water TRS 138 2 TRS TRS 201 A SO4 139 3 SO4 SO4 202 A HOH 140 4 HOH HOH 301 A HOH 141 4 HOH HOH 302 A HOH 142 4 HOH HOH 303 A HOH 143 4 HOH HOH 304 A HOH 144 4 HOH HOH 305 A HOH 145 4 HOH HOH 306 A HOH 146 4 HOH HOH 307 A HOH 147 4 HOH HOH 308 A HOH 148 4 HOH HOH 309 A HOH 149 4 HOH HOH 310 A HOH 150 4 HOH HOH 311 A HOH 151 4 HOH HOH 312 A HOH 152 4 HOH HOH 313 A HOH 153 4 HOH HOH 314 A HOH 154 4 HOH HOH 315 A HOH 155 4 HOH HOH 316 A HOH 156 4 HOH HOH 317 A HOH 157 4 HOH HOH 318 A HOH 158 4 HOH HOH 319 A HOH 159 4 HOH HOH 320 A HOH 160 4 HOH HOH 321 A HOH 161 4 HOH HOH 322 A HOH 162 4 HOH HOH 323 A HOH 163 4 HOH HOH 324 A HOH 164 4 HOH HOH 325 A HOH 165 4 HOH HOH 326 A HOH 167 4 HOH HOH 327 A HOH 168 4 HOH HOH 328 A HOH 169 4 HOH HOH 329 A HOH 170 4 HOH HOH 330 A HOH 171 4 HOH HOH 331 A HOH 172 4 HOH HOH 332 A HOH 173 4 HOH HOH 333 A HOH 174 4 HOH HOH 334 A HOH 175 4 HOH HOH 335 A HOH 176 4 HOH HOH 336 A HOH 177 4 HOH HOH 337 A HOH 178 4 HOH HOH 338 A HOH 179 4 HOH HOH 339 A HOH 180 4 HOH HOH 340 A HOH 181 4 HOH HOH 341 A HOH 182 4 HOH HOH 342 A HOH 183 4 HOH HOH 343 A HOH 184 4 HOH HOH 344 A HOH 185 4 HOH HOH 345 A HOH 186 4 HOH HOH 346 A HOH 187 4 HOH HOH 347 A HOH 188 4 HOH HOH 348 A HOH 189 4 HOH HOH 349 A HOH 190 4 HOH HOH 350 A HOH 191 4 HOH HOH 351 A HOH 192 4 HOH HOH 352 A HOH 193 4 HOH HOH 353 A HOH 194 4 HOH HOH 354 A HOH 195 4 HOH HOH 355 A HOH 196 4 HOH HOH 356 A HOH 197 4 HOH HOH 357 A HOH 198 4 HOH HOH 358 A HOH 199 4 HOH HOH 359 A HOH 200 4 HOH HOH 360 A HOH 201 4 HOH HOH 361 A HOH 202 4 HOH HOH 362 A HOH 203 4 HOH HOH 363 A HOH 204 4 HOH HOH 364 A HOH 205 4 HOH HOH 365 A HOH 206 4 HOH HOH 366 A HOH 207 4 HOH HOH 367 A HOH 208 4 HOH HOH 368 A HOH 209 4 HOH HOH 369 A HOH 210 4 HOH HOH 370 A HOH 211 4 HOH HOH 371 A HOH 212 4 HOH HOH 372 A HOH 213 4 HOH HOH 373 A HOH 214 4 HOH HOH 374 A HOH 215 4 HOH HOH 375 A HOH 216 4 HOH HOH 376 A HOH 217 4 HOH HOH 377 A HOH 218 4 HOH HOH 378 A HOH 219 4 HOH HOH 379 A HOH 220 4 HOH HOH 380 A HOH 221 4 HOH HOH 381 A HOH 222 4 HOH HOH 382 A HOH 223 4 HOH HOH 383 A HOH 224 4 HOH HOH 384 A HOH 225 4 HOH HOH 385 A HOH 226 4 HOH HOH 386 A HOH 227 4 HOH HOH 387 A HOH 228 4 HOH HOH 388 A HOH 229 4 HOH HOH 389 A HOH 230 4 HOH HOH 390 A HOH 231 4 HOH HOH 391 A HOH 232 4 HOH HOH 392 A HOH 233 4 HOH HOH 393 A HOH 234 4 HOH HOH 394 A HOH 235 4 HOH HOH 395 A HOH 236 4 HOH HOH 396 A HOH 237 4 HOH HOH 397 A HOH 238 4 HOH HOH 398 A HOH 239 4 HOH HOH 399 A HOH 240 4 HOH HOH 400 A HOH 241 4 HOH HOH 401 A HOH 242 4 HOH HOH 402 A HOH 243 4 HOH HOH 403 A HOH 244 4 HOH HOH 404 A HOH 245 4 HOH HOH 405 A HOH 246 4 HOH HOH 406 A HOH 247 4 HOH HOH 407 A HOH 248 4 HOH HOH 408 A HOH 249 4 HOH HOH 409 A HOH 250 4 HOH HOH 410 A HOH 251 4 HOH HOH 411 A HOH 252 4 HOH HOH 412 A HOH 253 4 HOH HOH 413 A HOH 254 4 HOH HOH 414 A HOH 255 4 HOH HOH 415 A HOH 256 4 HOH HOH 416 A HOH 257 4 HOH HOH 417 A HOH 258 4 HOH HOH 418 A HOH 259 4 HOH HOH 419 A HOH 260 4 HOH HOH 420 A HOH 261 4 HOH HOH 421 A HOH 262 4 HOH HOH 422 A HOH 263 4 HOH HOH 423 A HOH 264 4 HOH HOH 424 A HOH 265 4 HOH HOH 425 A HOH 266 4 HOH HOH 426 A HOH 267 4 HOH HOH 427 A HOH 268 4 HOH HOH 428 A HOH 269 4 HOH HOH 429 A HOH 270 4 HOH HOH 430 A HOH 271 4 HOH HOH 431 A HOH 272 4 HOH HOH 432 A HOH 273 4 HOH HOH 433 A HOH 274 4 HOH HOH 434 A HOH 275 4 HOH HOH 435 A HOH 276 4 HOH HOH 436 A HOH 277 4 HOH HOH 437 A HOH 278 4 HOH HOH 438 A HOH 279 4 HOH HOH 439 A HOH 280 4 HOH HOH 440 A HOH 281 4 HOH HOH 441 A HOH 282 4 HOH HOH 442 A HOH 283 4 HOH HOH 443 A HOH 284 4 HOH HOH 444 A HOH 285 4 HOH HOH 445 A HOH 286 4 HOH HOH 446 A HOH 287 4 HOH HOH 447 A HOH 288 4 HOH HOH 448 A HOH 289 4 HOH HOH 449 A HOH 290 4 HOH HOH 450 A HOH 291 4 HOH HOH 451 A HOH 292 4 HOH HOH 452 A HOH 293 4 HOH HOH 453 A HOH 294 4 HOH HOH 454 A HOH 295 4 HOH HOH 455 A HOH 296 4 HOH HOH 456 A HOH 297 4 HOH HOH 457 A HOH 298 4 HOH HOH 458 A HOH 299 4 HOH HOH 459 A HOH 300 4 HOH HOH 460 A HOH 301 4 HOH HOH 461 A HOH 302 4 HOH HOH 462 A HOH 303 4 HOH HOH 463 A HOH 304 4 HOH HOH 464 A HOH 305 4 HOH HOH 465 A HOH 306 4 HOH HOH 466 A HOH 307 4 HOH HOH 467 A HOH 308 4 HOH HOH 468 A HOH 309 4 HOH HOH 469 A HOH 310 4 HOH HOH 470 A HOH 311 4 HOH HOH 471 A HOH 312 4 HOH HOH 472 A HOH 313 4 HOH HOH 473 A HOH 314 4 HOH HOH 474 A HOH 315 4 HOH HOH 475 A HOH 316 4 HOH HOH 476 A HOH 317 4 HOH HOH 477 A n 1 -5 A n 2 -4 A n 3 -3 A n 4 -2 A n 5 -1 A HIS 1 n 6 HIS 0 A GLU 11 n 7 GLU 11 A VAL 12 n 8 VAL 12 A LEU 13 n 9 LEU 13 A LEU 14 n 10 LEU 14 A ARG 15 n 11 ARG 15 A SER 16 n 12 SER 16 A THR 17 n 13 THR 17 A GLU 18 n 14 GLU 18 A THR 19 n 15 THR 19 A GLY 20 n 16 GLY 20 A GLN 21 n 17 GLN 21 A LEU 22 n 18 LEU 22 A LEU 23 n 19 LEU 23 A ARG 24 n 20 ARG 24 A ILE 25 n 21 ILE 25 A ASN 26 n 22 ASN 26 A PRO 27 n 23 PRO 27 A ASP 28 n 24 ASP 28 A GLY 29 n 25 GLY 29 A THR 30 n 26 THR 30 A VAL 31 n 27 VAL 31 A ASP 32 n 28 ASP 32 A GLY 33 n 29 GLY 33 A THR 34 n 30 THR 34 A ARG 35 n 31 ARG 35 A ASP 36 n 32 ASP 36 A ARG 37 n 33 ARG 37 A SER 38 n 34 SER 38 A ASP 39 n 35 ASP 39 A PRO 40 n 36 PRO 40 A GLY 41 n 37 GLY 41 A ILE 42 n 38 ILE 42 A GLN 43 n 39 GLN 43 A LEU 44 n 40 LEU 44 A GLN 45 n 41 GLN 45 A ILE 46 n 42 ILE 46 A SER 47 n 43 SER 47 A PRO 48 n 44 PRO 48 A GLU 49 n 45 GLU 49 A GLY 50 n 46 GLY 50 A ASN 51 n 47 ASN 51 A GLY 52 n 48 GLY 52 A GLU 53 n 49 GLU 53 A VAL 54 n 50 VAL 54 A LEU 55 n 51 LEU 55 A LEU 56 n 52 LEU 56 A ARG 57 n 53 ARG 57 A SER 58 n 54 SER 58 A THR 59 n 55 THR 59 A GLU 60 n 56 GLU 60 A THR 61 n 57 THR 61 A GLY 62 n 58 GLY 62 A GLN 63 n 59 GLN 63 A LEU 64 n 60 LEU 64 A LEU 65 n 61 LEU 65 A ARG 66 n 62 ARG 66 A ILE 67 n 63 ILE 67 A ASN 68 n 64 ASN 68 A PRO 69 n 65 PRO 69 A ASP 70 n 66 ASP 70 A GLY 71 n 67 GLY 71 A THR 72 n 68 THR 72 A VAL 73 n 69 VAL 73 A ASP 74 n 70 ASP 74 A GLY 75 n 71 GLY 75 A THR 76 n 72 THR 76 A ARG 476 n 73 A ARG 76 A ASP 77 n 74 ASP 77 A ARG 78 n 75 ARG 78 A SER 79 n 76 SER 79 A ASP 80 n 77 ASP 80 A PRO 81 n 78 PRO 81 A GLY 82 n 79 GLY 82 A ILE 83 n 80 ILE 83 A GLN 84 n 81 GLN 84 A LEU 85 n 82 LEU 85 A GLN 86 n 83 GLN 86 A ILE 87 n 84 ILE 87 A SER 88 n 85 SER 88 A PRO 89 n 86 PRO 89 A GLU 90 n 87 GLU 90 A GLY 91 n 88 GLY 91 A ASN 92 n 89 ASN 92 A GLY 93 n 90 GLY 93 A GLU 94 n 91 GLU 94 A VAL 95 n 92 VAL 95 A LEU 96 n 93 LEU 96 A LEU 97 n 94 LEU 97 A ARG 98 n 95 ARG 98 A SER 99 n 96 SER 99 A THR 100 n 97 THR 100 A GLU 101 n 98 GLU 101 A THR 102 n 99 THR 102 A GLY 103 n 100 GLY 103 A GLN 107 n 101 GLN 107 A LEU 108 n 102 LEU 108 A LEU 109 n 103 LEU 109 A ARG 110 n 104 ARG 110 A ILE 111 n 105 ILE 111 A ASN 112 n 106 ASN 112 A PRO 113 n 107 PRO 113 A ASP 114 n 108 ASP 114 A GLY 115 n 109 GLY 115 A THR 116 n 110 THR 116 A VAL 117 n 111 VAL 117 A ASP 118 n 112 ASP 118 A GLY 119 n 113 GLY 119 A THR 123 n 114 THR 123 A ARG 423 n 115 A ARG 123 A ASP 124 n 116 ASP 124 A ARG 125 n 117 ARG 125 A SER 126 n 118 SER 126 A ASP 127 n 119 ASP 127 A PRO 128 n 120 PRO 128 A GLY 129 n 121 GLY 129 A ILE 130 n 122 ILE 130 A GLN 131 n 123 GLN 131 A LEU 132 n 124 LEU 132 A GLN 133 n 125 GLN 133 A ILE 134 n 126 ILE 134 A SER 135 n 127 SER 135 A PRO 136 n 128 PRO 136 A GLU 137 n 129 GLU 137 A n 130 138 A n 131 139 A n 132 140 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 13 A N LEU 9 A O SER 135 A O SER 127 A O LEU 132 A O LEU 124 A N VAL 95 A N VAL 92 A O GLU 94 A O GLU 91 A N GLU 90 A N GLU 87 A N LEU 22 A N LEU 18 A O THR 34 A O THR 30 A N GLU 49 A N GLU 45 A O GLU 53 A O GLU 49 A N LEU 64 A N LEU 60 A O THR 76 A O THR 72 A N LEU 108 A N LEU 102 A O THR 123 A O THR 114 1 A HIS -5 A HIS 1 1 Y 1 A HIS -4 A HIS 2 1 Y 1 A HIS -3 A HIS 3 1 Y 1 A HIS -2 A HIS 4 1 Y 1 A HIS -1 A HIS 5 1 Y 1 A GLY 138 A GLY 130 1 Y 1 A ASN 139 A ASN 131 1 Y 1 A GLY 140 A GLY 132 1 Y 64.540 20.2147 6.220 0.0261 -0.0000 0.0000 -1.2013 -0.0000 1.1752 0.2139 0.1647 0.1671 1.9010 19.9900 579 12143 11533 5.0200 95.2400 1.000 0.380 0.8945 0.4300 Random 5% 1 2.010 MOLECULAR REPLACEMENT 16.9400 0.8600 1.1000 ML FLAT BULK SOLVENT MODEL 41.4560 0.3740 1.9010 19.9900 177 1129 13 0 939 0.006 998 1.066 1361 0.071 154 0.006 192 15.639 399 0.2711 0.2011 2.0919 136 2414 2550 4 86.0000 0.1895 0.1413 2.3942 140 2778 2918 4 98.0000 0.2206 0.1543 3.0147 146 2819 2965 4 98.0000 0.2061 0.1712 19.9909 157 2943 3100 4 99.0000 1.900 20.000 4D8H 12143 11803 3 3 0.095 1.913 1 11.200 12.300 97.200 0.342 1.900 1.960 756 0.753 1 5.800 76.200 0.278 1.960 2.020 911 0.840 1 8.100 91.500 0.248 2.020 2.090 972 1.015 1 11.500 99.000 0.200 2.090 2.170 991 1.093 1 13.300 100.000 0.173 2.170 2.270 993 1.219 1 13.600 100.000 0.144 2.270 2.390 1007 1.349 1 13.600 100.000 0.138 2.390 2.540 984 1.465 1 13.700 100.000 0.118 2.540 2.740 1019 1.757 1 13.600 99.900 0.103 2.740 3.010 1011 2.017 1 13.600 99.700 0.081 3.010 3.450 1015 2.626 1 13.300 99.700 0.068 3.450 4.340 1034 3.238 1 13.000 99.400 0.059 4.340 20.000 1110 3.989 1 12.800 100.000 data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.7.2_869 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data collection CrystalClear data reduction DENZO phasing PHASES Crystal structure of Symfoil-4P/PV2: de novo designed beta-trefoil architecture with symmetric primary structure, primitive version 2 (6xLeu / PV1) 1 N N 2 N N 3 N N 4 N N A ASP 39 A ASP 35 HELX_P A ILE 42 A ILE 38 5 1 4 A ASP 80 A ASP 77 HELX_P A ILE 83 A ILE 80 5 2 4 A ASP 127 A ASP 119 HELX_P A ILE 130 A ILE 122 5 3 4 DE NOVO PROTEIN beta-trefoil, symmetric, pre-biotic, Symfoil, DE NOVO PROTEIN 4D8H PDB 1 1 4D8H HHHHHHEVLLRSTETGQLLRINPDGTVDGTRDRSDPGIQLQISPEGNGEVLLRSTETGQLLRINPDGTVDGTRDRSDPGI QLQISPEGNGEVLLRSTETGQLLRINPDGTVDGTRDRSDPGIQLQISPEGNG -5 140 4D8H -5 140 4D8H A 1 1 132 4 2 2 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 12 A VAL 8 A SER 16 A SER 12 A LEU 132 A LEU 124 A PRO 136 A PRO 128 A GLU 94 A GLU 91 A SER 99 A SER 96 A LEU 85 A LEU 82 A GLY 91 A GLY 88 A LEU 22 A LEU 18 A ILE 25 A ILE 21 A VAL 31 A VAL 27 A THR 34 A THR 30 A LEU 44 A LEU 40 A GLY 50 A GLY 46 A GLU 53 A GLU 49 A SER 58 A SER 54 A LEU 64 A LEU 60 A ILE 67 A ILE 63 A VAL 73 A VAL 69 A THR 76 A THR 72 A LEU 108 A LEU 102 A ILE 111 A ILE 105 A VAL 117 A VAL 111 A THR 123 A THR 114 BINDING SITE FOR RESIDUE TRS A 201 A TRS 201 Software 9 BINDING SITE FOR RESIDUE SO4 A 202 A SO4 202 Software 7 A THR 30 A THR 26 9 1_555 A VAL 31 A VAL 27 9 1_555 A THR 72 A THR 68 9 1_555 A VAL 73 A VAL 69 9 1_555 A THR 116 A THR 110 9 1_555 A VAL 117 A VAL 111 9 1_555 A HOH 312 D HOH 9 1_555 A HOH 315 D HOH 9 1_555 A HOH 316 D HOH 9 1_555 A ARG 66 A ARG 62 7 1_555 A ARG 123 A ARG 115 A 7 3_545 A ARG 125 A ARG 117 7 3_545 A HOH 305 D HOH 7 1_555 A HOH 309 D HOH 7 1_555 A HOH 408 D HOH 7 3_545 A HOH 474 D HOH 7 3_545 19 P 21 21 21