0.033079
0.019098
0.000000
0.000000
0.038196
0.000000
0.000000
0.000000
0.008386
0.00000
0.00000
0.00000
Ferraroni, M.
Bazzicalupi, C.
Gratteri, P.
Bilia, A.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
120.00
30.231
30.231
119.247
Ca 2
40.078
CALCIUM ION
non-polymer
C21 H18 N O4 1
348.372
1,2-dimethoxy-12-methyl[1,3]benzodioxolo[5,6-c]phenanthridin-12-ium
chelerythrine
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
CA
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
N
Y
11
N
C
Y
12
N
C
Y
13
N
C
N
14
N
C
Y
15
N
C
Y
16
N
C
Y
17
N
C
Y
18
N
C
N
19
N
O
N
20
N
C
N
21
N
O
N
22
N
C
Y
23
N
C
Y
24
N
C
N
25
N
O
N
26
N
C
N
27
N
O
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
O
N
47
N
P
N
48
N
O
N
49
N
O
N
50
N
O
N
51
N
C
N
52
R
C
N
53
N
O
N
54
S
C
N
55
N
O
N
56
N
C
N
57
R
C
Y
58
N
N
Y
59
N
C
Y
60
N
N
Y
61
N
C
Y
62
N
C
N
63
N
N
Y
64
N
N
Y
65
N
C
Y
66
N
N
Y
67
N
C
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
O
N
83
N
P
N
84
N
O
N
85
N
O
N
86
N
O
N
87
N
C
N
88
R
C
N
89
N
O
N
90
S
C
N
91
N
O
N
92
N
C
N
93
R
C
N
94
N
N
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
C
N
99
N
N
N
100
N
C
N
101
N
C
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
O
N
117
N
P
N
118
N
O
N
119
N
O
N
120
N
O
N
121
N
C
N
122
R
C
N
123
N
O
N
124
S
C
N
125
N
O
N
126
N
C
N
127
R
C
Y
128
N
N
Y
129
N
C
Y
130
N
N
Y
131
N
C
N
132
N
C
N
133
N
O
N
134
N
N
N
135
N
C
N
136
N
N
N
137
N
N
Y
138
N
C
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
O
N
154
N
P
N
155
N
O
N
156
N
O
N
157
N
O
N
158
N
C
N
159
R
C
N
160
N
O
N
161
S
C
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
N
N
166
N
C
N
167
N
O
N
168
N
N
N
169
N
C
N
170
N
O
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
O
N
190
N
H
N
191
N
H
Y
1
N
doub
Y
2
N
sing
Y
3
N
sing
Y
4
N
sing
Y
5
N
doub
Y
6
N
sing
Y
7
N
sing
Y
8
N
doub
Y
9
N
sing
Y
10
N
sing
Y
11
N
sing
Y
12
N
doub
Y
13
N
doub
N
14
N
sing
Y
15
N
doub
Y
16
N
sing
Y
17
N
sing
Y
18
N
sing
Y
19
N
sing
Y
20
N
doub
N
21
N
sing
Y
22
N
doub
N
23
N
sing
N
24
N
sing
N
25
N
sing
Y
26
N
doub
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
Y
72
N
sing
Y
73
N
sing
Y
74
N
doub
N
75
N
sing
Y
76
N
sing
Y
77
N
sing
Y
78
N
doub
N
79
N
sing
Y
80
N
doub
N
81
N
sing
N
82
N
sing
Y
83
N
sing
Y
84
N
doub
N
85
N
sing
Y
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
Y
145
N
sing
Y
146
N
sing
Y
147
N
doub
N
148
N
sing
Y
149
N
sing
N
150
N
sing
Y
151
N
doub
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
To be Published
0353
The crystal structure of Chelerythrine bound to DNA d(CGTACG)
10.2210/pdb4d9y/pdb
pdb_00004d9y
100
1
CCD
2011-03-13
PILATUS 2M
double-crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
5.2R
ELETTRA
1.000
SYNCHROTRON
ELETTRA BEAMLINE 5.2R
1809.217
DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
4
syn
polymer
348.372
1,2-dimethoxy-12-methyl[1,3]benzodioxolo[5,6-c]phenanthridin-12-ium
1
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
11
nat
water
no
no
(DC)(DG)(DT)(DA)(DC)(DG)
CGTACG
A,B,C,D
polydeoxyribonucleotide
n
n
n
n
n
n
1
2.19
43.89
VAPOR DIFFUSION
6.5
MPD, MgCl2, NaCl, KCL, spermine, pH 6.5, VAPOR DIFFUSION, temperature 296K
296
-19.257
1
19
B
208
A
105
-6.882
B_DG208:DC105_A
1
-5.579
-0.289
0.297
-0.286
4.724
1
20
B
209
A
104
-4.004
B_DT209:DA104_A
2
-13.910
0.750
-0.493
0.224
-6.397
1
20
B
210
A
103
7.029
B_DA210:DT103_A
3
-4.631
1.153
0.882
-0.139
1.049
1
19
B
211
A
102
-0.752
B_DC211:DG102_A
4
7.937
0.898
0.324
-0.194
-5.707
1
19
C
302
D
411
10.803
C_DG302:DC411_D
5
-3.501
-0.344
-0.163
0.041
-8.841
1
20
C
303
D
410
-11.888
C_DT303:DA410_D
6
-7.406
-0.098
1.254
-0.605
6.144
C
304
D
409
-0.577
C_DA304:DT409_D
7
-9.485
-0.047
0.330
0.428
11.921
1
19
C
305
D
408
-3.863
C_DC305:DG408_D
8
-13.514
0.375
0.433
-0.444
2.336
32.601
B
B
208
209
7.479
A
A
105
104
2.698
4.136
-0.757
-0.322
BB_DG208DT209:DA104DC105_AA
1
8.949
-16.183
31.113
-1.140
2.576
3.270
43.067
B
B
209
210
5.272
A
A
104
103
3.490
3.820
0.123
-0.623
BB_DT209DA210:DT103DA104_AA
2
-11.817
16.308
41.319
-1.247
-1.399
3.119
24.717
B
B
210
211
-2.364
A
A
103
102
3.173
-1.005
-0.037
-0.519
BB_DA210DC211:DG102DT103_AA
3
5.025
-11.823
24.188
-0.914
1.573
3.188
-69.852
B
C
211
302
-5.078
A
D
102
411
3.325
5.801
0.400
1.098
BC_DC211DG302:DC411DG102_DA
4
7.108
6.221
-69.323
-1.167
0.603
3.662
29.322
C
C
302
303
2.841
D
D
411
410
3.599
1.387
-1.040
-0.405
CC_DG302DT303:DA410DC411_DD
5
-13.277
27.191
26.166
-1.153
-1.315
2.944
39.925
C
C
303
304
-10.568
D
D
410
409
2.864
-7.111
0.367
-0.691
CC_DT303DA304:DT409DA410_DD
6
9.793
-14.554
38.118
-0.266
0.490
2.768
35.703
C
C
304
305
14.273
D
D
409
408
3.113
8.661
0.808
-0.811
CC_DA304DC305:DG408DT409_DD
7
-2.680
4.416
34.569
-2.468
-1.672
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Refinement description
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-01-23
1
1
2013-03-13
1
2
2017-11-15
1
3
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The same sequence complexed with Berberine
The same sequence complexed with Sanguinarine
The same sequence complexed with Coptisine
RCSB
Y
RCSB
2012-01-12
REL
REL
CTI
1,2-dimethoxy-12-methyl[1,3]benzodioxolo[5,6-c]phenanthridin-12-ium
CA
CALCIUM ION
HOH
water
synthetic DNA
sample
3NP6
PDB ENTRY 3NP6
PDB
experimental model
CTI
606
2
CTI
CTI
201
A
CA
501
3
CA
CA
501
B
HOH
709
4
HOH
HOH
301
A
HOH
708
4
HOH
HOH
601
B
HOH
701
4
HOH
HOH
602
B
HOH
702
4
HOH
HOH
603
B
HOH
703
4
HOH
HOH
401
C
HOH
710
4
HOH
HOH
402
C
HOH
704
4
HOH
HOH
501
D
HOH
705
4
HOH
HOH
502
D
HOH
706
4
HOH
HOH
503
D
HOH
707
4
HOH
HOH
504
D
HOH
711
4
HOH
HOH
505
D
3.500
3.500
26.170
26.170
DC
101
n
1
DC
101
A
DG
102
n
2
DG
102
A
DT
103
n
3
DT
103
A
DA
104
n
4
DA
104
A
DC
105
n
5
DC
105
A
DG
106
n
6
DG
106
A
DC
207
n
1
DC
207
B
DG
208
n
2
DG
208
B
DT
209
n
3
DT
209
B
DA
210
n
4
DA
210
B
DC
211
n
5
DC
211
B
DG
212
n
6
DG
212
B
DC
301
n
1
DC
301
C
DG
302
n
2
DG
302
C
DT
303
n
3
DT
303
C
DA
304
n
4
DA
304
C
DC
305
n
5
DC
305
C
DG
306
n
6
DG
306
C
DC
407
n
1
DC
407
D
DG
408
n
2
DG
408
D
DT
409
n
3
DT
409
D
DA
410
n
4
DA
410
D
DC
411
n
5
DC
411
D
DG
412
n
6
DG
412
D
0.2196
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
550
-6
2720
370
-2
2640
B
DG
212
B
OP1
DG
6
1_555
B
CA
501
F
CA
CA
1_555
D
DG
412
D
OP1
DG
6
1_555
68.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
O5'
DC
101
A
O5'
DC
1
1
Y
1
A
C5'
DC
101
A
C5'
DC
1
1
Y
1
A
C4'
DC
101
A
C4'
DC
1
1
Y
1
A
O4'
DC
101
A
O4'
DC
1
1
Y
1
A
C3'
DC
101
A
C3'
DC
1
1
Y
1
A
C2'
DC
101
A
C2'
DC
1
1
Y
1
A
C1'
DC
101
A
C1'
DC
1
1
Y
1
A
N1
DC
101
A
N1
DC
1
1
Y
1
A
C2
DC
101
A
C2
DC
1
1
Y
1
A
O2
DC
101
A
O2
DC
1
1
Y
1
A
N3
DC
101
A
N3
DC
1
1
Y
1
A
C4
DC
101
A
C4
DC
1
1
Y
1
A
N4
DC
101
A
N4
DC
1
1
Y
1
A
C5
DC
101
A
C5
DC
1
1
Y
1
A
C6
DC
101
A
C6
DC
1
1
Y
1
C
O5'
DC
301
C
O5'
DC
1
1
Y
1
C
C5'
DC
301
C
C5'
DC
1
1
Y
1
C
C4'
DC
301
C
C4'
DC
1
1
Y
1
C
O4'
DC
301
C
O4'
DC
1
1
Y
1
C
C3'
DC
301
C
C3'
DC
1
1
Y
1
C
C2'
DC
301
C
C2'
DC
1
1
Y
1
C
C1'
DC
301
C
C1'
DC
1
1
Y
1
C
N1
DC
301
C
N1
DC
1
1
Y
1
C
C2
DC
301
C
C2
DC
1
1
Y
1
C
O2
DC
301
C
O2
DC
1
1
Y
1
C
N3
DC
301
C
N3
DC
1
1
Y
1
C
C4
DC
301
C
C4
DC
1
1
Y
1
C
N4
DC
301
C
N4
DC
1
1
Y
1
C
C5
DC
301
C
C5
DC
1
1
Y
1
C
C6
DC
301
C
C6
DC
1
1
Y
1
1.92
0.30
108.30
110.22
A
A
A
O4'
C1'
N1
DT
DT
DT
103
103
103
N
1
-7.69
1.00
110.10
102.41
A
A
A
C1'
O4'
C4'
DC
DC
DC
105
105
105
N
1
2.20
0.30
108.30
110.50
A
A
A
O4'
C1'
N1
DC
DC
DC
105
105
105
N
1
-6.59
1.00
110.10
103.51
B
B
B
C1'
O4'
C4'
DC
DC
DC
211
211
211
N
1
1.99
0.30
108.30
110.29
B
B
B
O4'
C1'
N9
DG
DG
DG
212
212
212
N
1
-6.09
1.00
110.10
104.01
C
C
C
C1'
O4'
C4'
DT
DT
DT
303
303
303
N
1
2.35
0.30
108.30
110.65
C
C
C
O4'
C1'
N1
DT
DT
DT
303
303
303
N
1
-3.75
0.60
118.90
115.15
D
D
D
N1
C2
O2
DC
DC
DC
411
411
411
N
1
-4.34
0.70
108.00
103.66
D
D
D
O4'
C1'
N9
DG
DG
DG
412
412
412
N
54.1262
Crystal was merohedrally twinned with a fraction of 0.46 and twin law -h, -k, l
0.3140
0.2196
2.10
20.0
209
4087
93.9
1.000
1.000
Reflections were chosen in thin resolution shells
1
FREE R
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 3NP6
Engh & Huber
2.10
20.0
11
488
27
450
0
0.006
0.026
0.005
0.373
2.19
85.29
46.830
2.100
30.0
4D9Y
4087
-3.000
0.089
1
13.390
99.000
0.226
2.100
2.230
5.340
1
97.800
0.187
2.230
2.380
7.620
1
99.700
0.117
2.380
2.570
12.230
1
98.900
0.111
2.570
2.810
14.290
1
99.000
0.092
2.810
3.140
16.980
1
99.400
0.089
3.140
3.630
18.840
1
99.300
0.085
3.630
4.430
19.330
1
99.500
0.078
4.430
6.230
18.790
1
99.300
0.083
6.230
30.0
17.570
1
97.900
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data reduction
XDS
data scaling
XDS
The crystal structure of Chelerythrine bound to DNA d(CGTACG)
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
metalc
2.215
B
DG
212
B
OP1
DG
6
1_555
B
CA
501
F
CA
CA
1_555
metalc
2.269
B
CA
501
F
CA
CA
1_555
D
DG
412
D
OP1
DG
6
1_555
hydrog
WATSON-CRICK
A
DG
102
A
N1
DG
2
1_555
B
DC
211
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
102
A
N2
DG
2
1_555
B
DC
211
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
102
A
O6
DG
2
1_555
B
DC
211
B
N4
DC
5
1_555
hydrog
TYPE_4_PAIR
A
DG
102
A
N2
DG
2
1_555
D
DG
412
D
N3
DG
6
1_555
hydrog
TYPE_4_PAIR
A
DG
102
A
N3
DG
2
1_555
D
DG
412
D
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DT
103
A
N3
DT
3
1_555
B
DA
210
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
103
A
O4
DT
3
1_555
B
DA
210
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DA
104
A
N1
DA
4
1_555
B
DT
209
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
104
A
N6
DA
4
1_555
B
DT
209
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
A
DC
105
A
N3
DC
5
1_555
B
DG
208
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
105
A
N4
DC
5
1_555
B
DG
208
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
105
A
O2
DC
5
1_555
B
DG
208
B
N2
DG
2
1_555
hydrog
TYPE_4_PAIR
B
DG
212
B
N2
DG
6
1_555
C
DG
302
C
N3
DG
2
1_555
hydrog
TYPE_4_PAIR
B
DG
212
B
N3
DG
6
1_555
C
DG
302
C
N2
DG
2
1_555
hydrog
WATSON-CRICK
C
DG
302
C
N1
DG
2
1_555
D
DC
411
D
N3
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
302
C
N2
DG
2
1_555
D
DC
411
D
O2
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
302
C
O6
DG
2
1_555
D
DC
411
D
N4
DC
5
1_555
hydrog
WATSON-CRICK
C
DT
303
C
N3
DT
3
1_555
D
DA
410
D
N1
DA
4
1_555
hydrog
WATSON-CRICK
C
DT
303
C
O4
DT
3
1_555
D
DA
410
D
N6
DA
4
1_555
hydrog
DA-DT PAIR
C
DA
304
C
N1
DA
4
1_555
D
DT
409
D
N3
DT
3
1_555
hydrog
WATSON-CRICK
C
DC
305
C
N3
DC
5
1_555
D
DG
408
D
N1
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
305
C
N4
DC
5
1_555
D
DG
408
D
O6
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
305
C
O2
DC
5
1_555
D
DG
408
D
N2
DG
2
1_555
DNA
DRUG-DNA COMPLEX, DOUBLE HELIX, DNA
4D9Y
PDB
1
4D9Y
CGTACG
101
106
4D9Y
101
106
4D9Y
A
1
1
6
207
212
4D9Y
207
212
4D9Y
B
1
1
6
301
306
4D9Y
301
306
4D9Y
C
1
1
6
407
412
4D9Y
407
412
4D9Y
D
1
1
6
BINDING SITE FOR RESIDUE CTI A 201
A
CTI
201
Software
11
BINDING SITE FOR RESIDUE CA B 501
B
CA
501
Software
4
A
DC
105
A
DC
5
11
1_555
A
DG
106
A
DG
6
11
1_555
A
HOH
301
G
HOH
11
1_555
B
DC
207
B
DC
1
11
4_555
B
DG
208
B
DG
2
11
1_555
B
HOH
602
H
HOH
11
1_555
C
DC
305
C
DC
5
11
1_455
C
DG
306
C
DG
6
11
1_455
D
DC
407
D
DC
1
11
4_545
D
DG
408
D
DG
2
11
1_455
D
HOH
502
J
HOH
11
4_545
B
DC
211
B
DC
5
4
5_555
B
DG
212
B
DG
6
4
5_555
B
DG
212
B
DG
6
4
1_555
D
DG
412
D
DG
6
4
1_555
154
P 32 2 1