0.007377 0.004259 0.000000 0.000000 0.008519 0.000000 0.000000 0.000000 0.017309 0.000000 0.000000 0.000000 Martins, N.H. Giuseppe, P.O. Meza, A.N. Murakami, M.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.000 90.000 120.000 135.551 135.551 57.772 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O S 78.133 DIMETHYL SULFOXIDE non-polymer C9 H13 N5 O4 255.231 9-(1,3-DIHYDROXY-PROPOXYMETHANE)GUANINE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N S N 90 N O N 91 N C N 92 N C N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N N N 100 N C Y 101 N C Y 102 N C N 103 N C N 104 N O N 105 N C N 106 N O N 107 N C N 108 N O N 109 N C Y 110 N N N 111 N N N 112 N N N 113 N C N 114 N O Y 115 N C Y 116 N N N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N N N 131 S C N 132 N C N 133 N O N 134 N C N 135 N C N 136 N C N 137 N O N 138 N N N 139 N O N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N N N 151 S C N 152 N C N 153 N O N 154 N C N 155 N C N 156 N C N 157 N O N 158 N O N 159 N O N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 N C N 171 N C N 172 N O N 173 N O N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N C N 180 N O N 181 N C N 182 N O N 183 N C N 184 N O N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C Y 198 N C Y 199 N N Y 200 N C Y 201 N C Y 202 N N N 203 N O N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N O N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 S C N 222 N C N 223 N C N 224 N C N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N N N 240 S C N 241 N C N 242 N O N 243 N C N 244 N C N 245 N C N 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C N 266 N C N 267 N C N 268 N C N 269 N N N 270 N O N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N N N 287 S C N 288 N C N 289 N O N 290 N C N 291 N C N 292 N S N 293 N C N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 S C N 308 N C N 309 N O N 310 N C Y 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N C N 317 N O N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N N N 330 S C N 331 N C N 332 N O N 333 N C N 334 N C N 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 N C N 351 N O N 352 N O N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N N N 361 S C N 362 N C N 363 N O N 364 R C N 365 N O N 366 N C N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C N 388 N O N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N N N 402 S C N 403 N C N 404 N O N 405 N C N 406 N C N 407 N C N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing Y 97 N sing N 98 N sing Y 99 N doub Y 100 N sing Y 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing Y 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing Y 194 N sing Y 195 N doub Y 196 N doub N 197 N sing Y 198 N sing N 199 N sing Y 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing Y 302 N doub Y 303 N sing Y 304 N sing N 305 N sing Y 306 N doub N 307 N sing Y 308 N doub N 309 N sing Y 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N doub N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing Y 371 N doub Y 372 N sing Y 373 N sing N 374 N sing Y 375 N doub N 376 N sing Y 377 N doub N 378 N sing Y 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N doub N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing US Plos One 1932-6203 7 e44282 e44282 10.1371/journal.pone.0044282 22957058 Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases. 2012 10.2210/pdb4da6/pdb pdb_00004da6 100 1 CCD MARMOSAIC 225 mm CCD SINGLE WAVELENGTH M x-ray 1 1.0 W01B-MX2 LNLS SYNCHROTRON LNLS BEAMLINE W01B-MX2 27562.137 Purine nucleoside phosphorylase deoD-type 2.4.2.1 1 man polymer 255.231 9-(1,3-DIHYDROXY-PROPOXYMETHANE)GUANINE 1 syn non-polymer 78.133 DIMETHYL SULFOXIDE 1 syn non-polymer 92.094 GLYCEROL 1 syn non-polymer 35.453 CHLORIDE ION 5 syn non-polymer 18.015 water 154 nat water PNP, Purine nucleoside phosphorylase II, PU-NPase II no no MGSSHHHHHHSSGLVPRGSHMSVHIGAEKGQIADTVLLPGDPLRAKFIAETYLENVECYNEVRGMYGFTGTYKGKKISVQ GTGMGVPSISIYVNELIQSYDVQNLIRVGSCGAIRKDVKVRDVILAMTSSTDSQMNRVAFGSVDFAPCADFELLKNAYDA AKDKGVPVTVGSVFTADQFYNDDSQIEKLAKYGVLGVEMETTALYTLAAKHGRKALSILTVSDHVLTGEETTAEERQTTF HDMIDVALHSVSQ MGSSHHHHHHSSGLVPRGSHMSVHIGAEKGQIADTVLLPGDPLRAKFIAETYLENVECYNEVRGMYGFTGTYKGKKISVQ GTGMGVPSISIYVNELIQSYDVQNLIRVGSCGAIRKDVKVRDVILAMTSSTDSQMNRVAFGSVDFAPCADFELLKNAYDA AKDKGVPVTVGSVFTADQFYNDDSQIEKLAKYGVLGVEMETTALYTLAAKHGRKALSILTVSDHVLTGEETTAEERQTTF HDMIDVALHSVSQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample BSU19630, deoD, punB 1423 Bacillus subtilis 562 Escherichia coli Rosetta plasmid pET28a 1 2.78 55.75 VAPOR DIFFUSION 4.6 0.1 M sodium acetate, 3.2 M sodium chloride, 5%(v/v) glycerol, pH 4.6, vapor diffusion, temperature 291K 291 chem_comp_atom chem_comp_bond database_2 pdbx_struct_special_symmetry struct_ref_seq_dif struct_site repository Initial release Data collection Database references Derived calculations 1 0 2012-09-26 1 1 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-01-12 REL REL GA2 9-(1,3-DIHYDROXY-PROPOXYMETHANE)GUANINE DMS DIMETHYL SULFOXIDE GOL GLYCEROL CL CHLORIDE ION HOH water AUTHORS STATE THAT THIS IS A CLONING ARTIFACT GA2 1 2 GA2 GA2 301 A DMS 2 3 DMS DMS 302 A GOL 3 4 GOL GOL 303 A CL 4 5 CL CL 304 A CL 5 5 CL CL 305 A CL 6 5 CL CL 306 A CL 7 5 CL CL 307 A CL 8 5 CL CL 308 A HOH 9 6 HOH HOH 401 A HOH 10 6 HOH HOH 402 A HOH 11 6 HOH HOH 403 A HOH 12 6 HOH HOH 404 A HOH 13 6 HOH HOH 405 A HOH 14 6 HOH HOH 406 A HOH 15 6 HOH HOH 407 A HOH 16 6 HOH HOH 408 A HOH 17 6 HOH HOH 409 A HOH 18 6 HOH HOH 410 A HOH 19 6 HOH HOH 411 A HOH 20 6 HOH HOH 412 A HOH 21 6 HOH HOH 413 A HOH 22 6 HOH HOH 414 A HOH 23 6 HOH HOH 415 A HOH 24 6 HOH HOH 416 A HOH 25 6 HOH HOH 417 A HOH 26 6 HOH HOH 418 A HOH 27 6 HOH HOH 419 A HOH 28 6 HOH HOH 420 A HOH 29 6 HOH HOH 421 A HOH 30 6 HOH HOH 422 A HOH 31 6 HOH HOH 423 A HOH 32 6 HOH HOH 424 A HOH 33 6 HOH HOH 425 A HOH 34 6 HOH HOH 426 A HOH 35 6 HOH HOH 427 A HOH 36 6 HOH HOH 428 A HOH 37 6 HOH HOH 429 A HOH 38 6 HOH HOH 430 A HOH 39 6 HOH HOH 431 A HOH 40 6 HOH HOH 432 A HOH 41 6 HOH HOH 433 A HOH 42 6 HOH HOH 434 A HOH 43 6 HOH HOH 435 A HOH 44 6 HOH HOH 436 A HOH 45 6 HOH HOH 437 A HOH 46 6 HOH HOH 438 A HOH 47 6 HOH HOH 439 A HOH 48 6 HOH HOH 440 A HOH 49 6 HOH HOH 441 A HOH 50 6 HOH HOH 442 A HOH 51 6 HOH HOH 443 A HOH 52 6 HOH HOH 444 A HOH 53 6 HOH HOH 445 A HOH 54 6 HOH HOH 446 A HOH 55 6 HOH HOH 447 A HOH 56 6 HOH HOH 448 A HOH 57 6 HOH HOH 449 A HOH 58 6 HOH HOH 450 A HOH 59 6 HOH HOH 451 A HOH 60 6 HOH HOH 452 A HOH 61 6 HOH HOH 453 A HOH 62 6 HOH HOH 454 A HOH 63 6 HOH HOH 455 A HOH 64 6 HOH HOH 456 A HOH 65 6 HOH HOH 457 A HOH 66 6 HOH HOH 458 A HOH 67 6 HOH HOH 459 A HOH 68 6 HOH HOH 460 A HOH 69 6 HOH HOH 461 A HOH 70 6 HOH HOH 462 A HOH 71 6 HOH HOH 463 A HOH 72 6 HOH HOH 464 A HOH 73 6 HOH HOH 465 A HOH 74 6 HOH HOH 466 A HOH 75 6 HOH HOH 467 A HOH 76 6 HOH HOH 468 A HOH 77 6 HOH HOH 469 A HOH 78 6 HOH HOH 470 A HOH 79 6 HOH HOH 471 A HOH 80 6 HOH HOH 472 A HOH 81 6 HOH HOH 473 A HOH 82 6 HOH HOH 474 A HOH 83 6 HOH HOH 475 A HOH 84 6 HOH HOH 476 A HOH 85 6 HOH HOH 477 A HOH 86 6 HOH HOH 478 A HOH 87 6 HOH HOH 479 A HOH 88 6 HOH HOH 480 A HOH 89 6 HOH HOH 481 A HOH 90 6 HOH HOH 482 A HOH 91 6 HOH HOH 483 A HOH 92 6 HOH HOH 484 A HOH 93 6 HOH HOH 485 A HOH 94 6 HOH HOH 486 A HOH 95 6 HOH HOH 487 A HOH 96 6 HOH HOH 488 A HOH 97 6 HOH HOH 489 A HOH 98 6 HOH HOH 490 A HOH 99 6 HOH HOH 491 A HOH 100 6 HOH HOH 492 A HOH 101 6 HOH HOH 493 A HOH 102 6 HOH HOH 494 A HOH 103 6 HOH HOH 495 A HOH 104 6 HOH HOH 496 A HOH 105 6 HOH HOH 497 A HOH 106 6 HOH HOH 498 A HOH 107 6 HOH HOH 499 A HOH 108 6 HOH HOH 500 A HOH 109 6 HOH HOH 501 A HOH 110 6 HOH HOH 502 A HOH 111 6 HOH HOH 503 A HOH 112 6 HOH HOH 504 A HOH 113 6 HOH HOH 505 A HOH 114 6 HOH HOH 506 A HOH 115 6 HOH HOH 507 A HOH 116 6 HOH HOH 508 A HOH 117 6 HOH HOH 509 A HOH 118 6 HOH HOH 510 A HOH 119 6 HOH HOH 511 A HOH 120 6 HOH HOH 512 A HOH 121 6 HOH HOH 513 A HOH 122 6 HOH HOH 514 A HOH 123 6 HOH HOH 515 A HOH 124 6 HOH HOH 516 A HOH 125 6 HOH HOH 517 A HOH 126 6 HOH HOH 518 A HOH 127 6 HOH HOH 519 A HOH 128 6 HOH HOH 520 A HOH 129 6 HOH HOH 521 A HOH 130 6 HOH HOH 522 A HOH 131 6 HOH HOH 523 A HOH 132 6 HOH HOH 524 A HOH 133 6 HOH HOH 525 A HOH 134 6 HOH HOH 526 A HOH 135 6 HOH HOH 527 A HOH 136 6 HOH HOH 528 A HOH 137 6 HOH HOH 529 A HOH 138 6 HOH HOH 530 A HOH 139 6 HOH HOH 531 A HOH 140 6 HOH HOH 532 A HOH 141 6 HOH HOH 533 A HOH 142 6 HOH HOH 534 A HOH 143 6 HOH HOH 535 A HOH 144 6 HOH HOH 536 A HOH 145 6 HOH HOH 537 A HOH 146 6 HOH HOH 538 A HOH 147 6 HOH HOH 539 A HOH 148 6 HOH HOH 540 A HOH 149 6 HOH HOH 541 A HOH 150 6 HOH HOH 542 A HOH 151 6 HOH HOH 543 A HOH 152 6 HOH HOH 544 A HOH 153 6 HOH HOH 545 A HOH 154 6 HOH HOH 546 A HOH 155 6 HOH HOH 547 A HOH 156 6 HOH HOH 548 A HOH 157 6 HOH HOH 549 A HOH 158 6 HOH HOH 550 A HOH 159 6 HOH HOH 551 A HOH 160 6 HOH HOH 552 A HOH 161 6 HOH HOH 553 A HOH 162 6 HOH HOH 554 A n 1 -19 A n 2 -18 A n 3 -17 A n 4 -16 A n 5 -15 A n 6 -14 A n 7 -13 A n 8 -12 A n 9 -11 A n 10 -10 A n 11 -9 A n 12 -8 A n 13 -7 A n 14 -6 A n 15 -5 A n 16 -4 A n 17 -3 A n 18 -2 A n 19 -1 A n 20 0 A n 21 1 A SER 2 n 22 SER 2 A VAL 3 n 23 VAL 3 A HIS 4 n 24 HIS 4 A ILE 5 n 25 ILE 5 A GLY 6 n 26 GLY 6 A ALA 7 n 27 ALA 7 A GLU 8 n 28 GLU 8 A LYS 9 n 29 LYS 9 A GLY 10 n 30 GLY 10 A GLN 11 n 31 GLN 11 A ILE 12 n 32 ILE 12 A ALA 13 n 33 ALA 13 A ASP 14 n 34 ASP 14 A THR 15 n 35 THR 15 A VAL 16 n 36 VAL 16 A LEU 17 n 37 LEU 17 A LEU 18 n 38 LEU 18 A PRO 19 n 39 PRO 19 A GLY 20 n 40 GLY 20 A ASP 21 n 41 ASP 21 A PRO 22 n 42 PRO 22 A LEU 23 n 43 LEU 23 A ARG 24 n 44 ARG 24 A ALA 25 n 45 ALA 25 A LYS 26 n 46 LYS 26 A PHE 27 n 47 PHE 27 A ILE 28 n 48 ILE 28 A ALA 29 n 49 ALA 29 A GLU 30 n 50 GLU 30 A THR 31 n 51 THR 31 A TYR 32 n 52 TYR 32 A LEU 33 n 53 LEU 33 A GLU 34 n 54 GLU 34 A ASN 35 n 55 ASN 35 A VAL 36 n 56 VAL 36 A GLU 37 n 57 GLU 37 A CYS 38 n 58 CYS 38 A TYR 39 n 59 TYR 39 A ASN 40 n 60 ASN 40 A GLU 41 n 61 GLU 41 A VAL 42 n 62 VAL 42 A ARG 43 n 63 ARG 43 A GLY 44 n 64 GLY 44 A MET 45 n 65 MET 45 A TYR 46 n 66 TYR 46 A GLY 47 n 67 GLY 47 A PHE 48 n 68 PHE 48 A THR 49 n 69 THR 49 A GLY 50 n 70 GLY 50 A THR 51 n 71 THR 51 A TYR 52 n 72 TYR 52 A LYS 53 n 73 LYS 53 A GLY 54 n 74 GLY 54 A LYS 55 n 75 LYS 55 A LYS 56 n 76 LYS 56 A ILE 57 n 77 ILE 57 A SER 58 n 78 SER 58 A VAL 59 n 79 VAL 59 A GLN 60 n 80 GLN 60 A GLY 61 n 81 GLY 61 A THR 62 n 82 THR 62 A GLY 63 n 83 GLY 63 A MET 64 n 84 MET 64 A GLY 65 n 85 GLY 65 A VAL 66 n 86 VAL 66 A PRO 67 n 87 PRO 67 A SER 68 n 88 SER 68 A ILE 69 n 89 ILE 69 A SER 70 n 90 SER 70 A ILE 71 n 91 ILE 71 A TYR 72 n 92 TYR 72 A VAL 73 n 93 VAL 73 A ASN 74 n 94 ASN 74 A GLU 75 n 95 GLU 75 A LEU 76 n 96 LEU 76 A ILE 77 n 97 ILE 77 A GLN 78 n 98 GLN 78 A SER 79 n 99 SER 79 A TYR 80 n 100 TYR 80 A ASP 81 n 101 ASP 81 A VAL 82 n 102 VAL 82 A GLN 83 n 103 GLN 83 A ASN 84 n 104 ASN 84 A LEU 85 n 105 LEU 85 A ILE 86 n 106 ILE 86 A ARG 87 n 107 ARG 87 A VAL 88 n 108 VAL 88 A GLY 89 n 109 GLY 89 A SER 90 n 110 SER 90 A CYS 91 n 111 CYS 91 A GLY 92 n 112 GLY 92 A ALA 93 n 113 ALA 93 A ILE 94 n 114 ILE 94 A ARG 95 n 115 ARG 95 A LYS 96 n 116 LYS 96 A ASP 97 n 117 ASP 97 A VAL 98 n 118 VAL 98 A LYS 99 n 119 LYS 99 A VAL 100 n 120 VAL 100 A ARG 101 n 121 ARG 101 A ASP 102 n 122 ASP 102 A VAL 103 n 123 VAL 103 A ILE 104 n 124 ILE 104 A LEU 105 n 125 LEU 105 A ALA 106 n 126 ALA 106 A MET 107 n 127 MET 107 A THR 108 n 128 THR 108 A SER 109 n 129 SER 109 A SER 110 n 130 SER 110 A THR 111 n 131 THR 111 A ASP 112 n 132 ASP 112 A SER 113 n 133 SER 113 A GLN 114 n 134 GLN 114 A MET 115 n 135 MET 115 A ASN 116 n 136 ASN 116 A ARG 117 n 137 ARG 117 A VAL 118 n 138 VAL 118 A ALA 119 n 139 ALA 119 A PHE 120 n 140 PHE 120 A GLY 121 n 141 GLY 121 A SER 122 n 142 SER 122 A VAL 123 n 143 VAL 123 A ASP 124 n 144 ASP 124 A PHE 125 n 145 PHE 125 A ALA 126 n 146 ALA 126 A PRO 127 n 147 PRO 127 A CYS 128 n 148 CYS 128 A ALA 129 n 149 ALA 129 A ASP 130 n 150 ASP 130 A PHE 131 n 151 PHE 131 A GLU 132 n 152 GLU 132 A LEU 133 n 153 LEU 133 A LEU 134 n 154 LEU 134 A LYS 135 n 155 LYS 135 A ASN 136 n 156 ASN 136 A ALA 137 n 157 ALA 137 A TYR 138 n 158 TYR 138 A ASP 139 n 159 ASP 139 A ALA 140 n 160 ALA 140 A ALA 141 n 161 ALA 141 A LYS 142 n 162 LYS 142 A ASP 143 n 163 ASP 143 A LYS 144 n 164 LYS 144 A GLY 145 n 165 GLY 145 A VAL 146 n 166 VAL 146 A PRO 147 n 167 PRO 147 A VAL 148 n 168 VAL 148 A THR 149 n 169 THR 149 A VAL 150 n 170 VAL 150 A GLY 151 n 171 GLY 151 A SER 152 n 172 SER 152 A VAL 153 n 173 VAL 153 A PHE 154 n 174 PHE 154 A THR 155 n 175 THR 155 A ALA 156 n 176 ALA 156 A ASP 157 n 177 ASP 157 A GLN 158 n 178 GLN 158 A PHE 159 n 179 PHE 159 A TYR 160 n 180 TYR 160 A ASN 161 n 181 ASN 161 A ASP 162 n 182 ASP 162 A ASP 163 n 183 ASP 163 A SER 164 n 184 SER 164 A GLN 165 n 185 GLN 165 A ILE 166 n 186 ILE 166 A GLU 167 n 187 GLU 167 A LYS 168 n 188 LYS 168 A LEU 169 n 189 LEU 169 A ALA 170 n 190 ALA 170 A LYS 171 n 191 LYS 171 A TYR 172 n 192 TYR 172 A GLY 173 n 193 GLY 173 A VAL 174 n 194 VAL 174 A LEU 175 n 195 LEU 175 A GLY 176 n 196 GLY 176 A VAL 177 n 197 VAL 177 A GLU 178 n 198 GLU 178 A MET 179 n 199 MET 179 A GLU 180 n 200 GLU 180 A THR 181 n 201 THR 181 A THR 182 n 202 THR 182 A ALA 183 n 203 ALA 183 A LEU 184 n 204 LEU 184 A TYR 185 n 205 TYR 185 A THR 186 n 206 THR 186 A LEU 187 n 207 LEU 187 A ALA 188 n 208 ALA 188 A ALA 189 n 209 ALA 189 A LYS 190 n 210 LYS 190 A HIS 191 n 211 HIS 191 A GLY 192 n 212 GLY 192 A ARG 193 n 213 ARG 193 A LYS 194 n 214 LYS 194 A ALA 195 n 215 ALA 195 A LEU 196 n 216 LEU 196 A SER 197 n 217 SER 197 A ILE 198 n 218 ILE 198 A LEU 199 n 219 LEU 199 A THR 200 n 220 THR 200 A VAL 201 n 221 VAL 201 A SER 202 n 222 SER 202 A ASP 203 n 223 ASP 203 A HIS 204 n 224 HIS 204 A VAL 205 n 225 VAL 205 A LEU 206 n 226 LEU 206 A THR 207 n 227 THR 207 A GLY 208 n 228 GLY 208 A GLU 209 n 229 GLU 209 A GLU 210 n 230 GLU 210 A THR 211 n 231 THR 211 A THR 212 n 232 THR 212 A ALA 213 n 233 ALA 213 A GLU 214 n 234 GLU 214 A GLU 215 n 235 GLU 215 A ARG 216 n 236 ARG 216 A GLN 217 n 237 GLN 217 A THR 218 n 238 THR 218 A THR 219 n 239 THR 219 A PHE 220 n 240 PHE 220 A HIS 221 n 241 HIS 221 A ASP 222 n 242 ASP 222 A MET 223 n 243 MET 223 A ILE 224 n 244 ILE 224 A ASP 225 n 245 ASP 225 A VAL 226 n 246 VAL 226 A ALA 227 n 247 ALA 227 A LEU 228 n 248 LEU 228 A HIS 229 n 249 HIS 229 A SER 230 n 250 SER 230 A VAL 231 n 251 VAL 231 A SER 232 n 252 SER 232 A n 253 233 A author_and_software_defined_assembly PISA 6 hexameric 31180 -316 44510 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_565 -y,x-y+1,z crystal symmetry operation -67.7755000000 117.3906095084 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_455 -x+y-1,-x,z crystal symmetry operation -135.5510000000 0.0000000000 0.0000000000 0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 10_555 -y,-x,-z+1/2 crystal symmetry operation 0.0000000000 0.0000000000 28.8860000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 11_455 -x+y-1,y,-z+1/2 crystal symmetry operation -135.5510000000 0.0000000000 28.8860000000 0.5000000000 0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12_565 x,x-y+1,-z+1/2 crystal symmetry operation -67.7755000000 117.3906095084 28.8860000000 A N GLU 37 A N GLU 57 A O THR 49 A O THR 69 A N TYR 52 A N TYR 72 A O LYS 55 A O LYS 75 A O SER 58 A O SER 78 A N LEU 17 A N LEU 37 A N LEU 18 A N LEU 38 A O ILE 86 A O ILE 106 A N CYS 91 A N CYS 111 A O SER 202 A O SER 222 A O LEU 199 A O LEU 219 A N ILE 104 A N ILE 124 A N SER 110 A N SER 130 A O THR 155 A O THR 175 A N PHE 154 A N PHE 174 A O GLU 178 A O GLU 198 A O VAL 177 A O VAL 197 A N GLY 92 A N GLY 112 1 A CL 306 G CL 1 A HOH 523 J HOH 1 A HOH 543 J HOH 1 A MET -19 A MET 1 1 Y 1 A GLY -18 A GLY 2 1 Y 1 A SER -17 A SER 3 1 Y 1 A SER -16 A SER 4 1 Y 1 A HIS -15 A HIS 5 1 Y 1 A HIS -14 A HIS 6 1 Y 1 A HIS -13 A HIS 7 1 Y 1 A HIS -12 A HIS 8 1 Y 1 A HIS -11 A HIS 9 1 Y 1 A HIS -10 A HIS 10 1 Y 1 A SER -9 A SER 11 1 Y 1 A SER -8 A SER 12 1 Y 1 A GLY -7 A GLY 13 1 Y 1 A LEU -6 A LEU 14 1 Y 1 A VAL -5 A VAL 15 1 Y 1 A PRO -4 A PRO 16 1 Y 1 A ARG -3 A ARG 17 1 Y 1 A GLY -2 A GLY 18 1 Y 1 A SER -1 A SER 19 1 Y 1 A HIS 0 A HIS 20 1 Y 1 A MET 1 A MET 21 1 Y 1 A GLN 233 A GLN 253 1 Y 1 A LEU 228 -14.36 1 A LEU 228 12.89 1 A ARG 43 59.00 14.20 1 A ARG 43 59.67 13.54 1 A GLU 180 -143.58 -35.20 70.840 28.7810 16.690 0.0100 0.0000 0.0000 0.0100 0.0000 -0.0100 0.9660 0.9570 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.2039 0.1776 0.1788 1.7000 41.1700 1717 34157 5.0000 98.0500 0.2227 0.1949 1.000 0.500 0.8887 1.6380 0.0550 0.0896 0.0890 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.0900 0.0890 0.8000 0.8000 1.4000 MAXIMUM LIKELIHOOD MASK 1.7000 41.1700 154 1948 33 0 1761 0.014 0.022 1919 1.473 1.972 2609 5.963 5.000 255 34.741 24.458 83 13.356 15.000 338 8.438 15.000 11 0.109 0.200 303 0.009 0.020 1431 0.837 1.500 1194 1.513 2.000 1940 2.413 3.000 725 4.048 4.500 658 0.4250 0.3590 1.7440 113 2334 2447 20 97.3000 1.700 50.000 4DA6 34286 0.066 1.037 1 16.800 8.800 98.400 0.455 1.700 1.760 3352 1.052 1 4.800 98.300 0.349 1.760 1.830 3408 1.040 1 8.700 99.900 0.242 1.830 1.910 3437 1.036 1 9.300 99.900 0.156 1.910 2.020 3406 1.033 1 9.300 99.600 0.119 2.020 2.140 3444 1.007 1 9.400 99.400 0.098 2.140 2.310 3421 1.069 1 9.400 99.300 0.085 2.310 2.540 3433 1.024 1 9.500 98.800 0.079 2.540 2.910 3430 1.011 1 9.200 98.100 0.067 2.910 3.660 3444 1.043 1 8.900 97.100 0.050 3.660 50.000 3511 1.062 1 9.400 93.700 data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program phasing Alexei Vaguine alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data reduction HKL-2000 data scaling HKL-2000 Crystal structure of the hexameric purine nucleoside phosphorylase from Bacillus subtilis in complex with ganciclovir 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N 5 N N 5 N N 6 N N A ASP 21 A ASP 41 HELX_P A LEU 33 A LEU 53 1 1 13 A GLU 41 A GLU 61 HELX_P A MET 45 A MET 65 5 2 5 A GLY 65 A GLY 85 HELX_P A ASP 81 A ASP 101 1 3 17 A GLN 114 A GLN 134 HELX_P A GLY 121 A GLY 141 1 4 8 A ASP 130 A ASP 150 HELX_P A GLY 145 A GLY 165 1 5 16 A GLN 165 A GLN 185 HELX_P A TYR 172 A TYR 192 1 6 8 A GLU 180 A GLU 200 HELX_P A HIS 191 A HIS 211 1 7 12 A THR 212 A THR 232 HELX_P A HIS 229 A HIS 249 1 8 18 TRANSFERASE Phosphorylase/hydrolase-like, TRANSFERASE DEOD_BACSU UNP 1 1 O34925 MSVHIGAEKGQIADTVLLPGDPLRAKFIAETYLENVECYNEVRGMYGFTGTYKGKKISVQGTGMGVPSISIYVNELIQSY DVQNLIRVGSCGAIRKDVKVRDVILAMTSSTDSQMNRVAFGSVDFAPCADFELLKNAYDAAKDKGVPVTVGSVFTADQFY NDDSQIEKLAKYGVLGVEMETTALYTLAAKHGRKALSILTVSDHVLTGEETTAEERQTTFHDMIEVALHSVSQ 1 233 4DA6 1 233 O34925 A 1 21 253 1 expression tag MET -19 4DA6 A O34925 UNP 1 1 expression tag GLY -18 4DA6 A O34925 UNP 2 1 expression tag SER -17 4DA6 A O34925 UNP 3 1 expression tag SER -16 4DA6 A O34925 UNP 4 1 expression tag HIS -15 4DA6 A O34925 UNP 5 1 expression tag HIS -14 4DA6 A O34925 UNP 6 1 expression tag HIS -13 4DA6 A O34925 UNP 7 1 expression tag HIS -12 4DA6 A O34925 UNP 8 1 expression tag HIS -11 4DA6 A O34925 UNP 9 1 expression tag HIS -10 4DA6 A O34925 UNP 10 1 expression tag SER -9 4DA6 A O34925 UNP 11 1 expression tag SER -8 4DA6 A O34925 UNP 12 1 expression tag GLY -7 4DA6 A O34925 UNP 13 1 expression tag LEU -6 4DA6 A O34925 UNP 14 1 expression tag VAL -5 4DA6 A O34925 UNP 15 1 expression tag PRO -4 4DA6 A O34925 UNP 16 1 expression tag ARG -3 4DA6 A O34925 UNP 17 1 expression tag GLY -2 4DA6 A O34925 UNP 18 1 expression tag SER -1 4DA6 A O34925 UNP 19 1 expression tag HIS 0 4DA6 A O34925 UNP 20 1 GLU SEE REMARK 999 ASP 225 4DA6 A O34925 UNP 225 245 10 anti-parallel anti-parallel parallel parallel parallel anti-parallel parallel parallel anti-parallel A GLU 34 A GLU 54 A ASN 40 A ASN 60 A GLY 47 A GLY 67 A TYR 52 A TYR 72 A LYS 55 A LYS 75 A GLN 60 A GLN 80 A THR 15 A THR 35 A LEU 18 A LEU 38 A ASN 84 A ASN 104 A ALA 93 A ALA 113 A LYS 194 A LYS 214 A HIS 204 A HIS 224 A VAL 103 A VAL 123 A THR 111 A THR 131 A VAL 148 A VAL 168 A THR 155 A THR 175 A GLY 176 A GLY 196 A GLU 178 A GLU 198 A ASN 84 A ASN 104 A ALA 93 A ALA 113 BINDING SITE FOR RESIDUE GA2 A 301 A GA2 301 Software 17 BINDING SITE FOR RESIDUE DMS A 302 A DMS 302 Software 6 BINDING SITE FOR RESIDUE GOL A 303 A GOL 303 Software 5 BINDING SITE FOR RESIDUE CL A 304 A CL 304 Software 4 BINDING SITE FOR RESIDUE CL A 305 A CL 305 Software 3 BINDING SITE FOR RESIDUE CL A 306 A CL 306 Software 3 BINDING SITE FOR RESIDUE CL A 307 A CL 307 Software 1 BINDING SITE FOR RESIDUE CL A 308 A CL 308 Software 4 A HIS 4 A HIS 24 17 10_555 A ARG 43 A ARG 63 17 10_555 A MET 64 A MET 84 17 1_555 A SER 90 A SER 110 17 1_555 A CYS 91 A CYS 111 17 1_555 A GLY 92 A GLY 112 17 1_555 A PHE 159 A PHE 179 17 1_555 A VAL 177 A VAL 197 17 1_555 A MET 179 A MET 199 17 1_555 A GLU 180 A GLU 200 17 1_555 A SER 202 A SER 222 17 1_555 A VAL 205 A VAL 225 17 1_555 A CL 304 E CL 17 1_555 A HOH 444 J HOH 17 1_555 A HOH 459 J HOH 17 1_555 A HOH 509 J HOH 17 1_555 A HOH 545 J HOH 17 1_555 A VAL 118 A VAL 138 6 1_555 A ALA 119 A ALA 139 6 1_555 A GLY 121 A GLY 141 6 1_555 A ASP 163 A ASP 183 6 10_555 A HOH 492 J HOH 6 1_555 A HOH 515 J HOH 6 11_455 A GLN 11 A GLN 31 5 1_555 A ASN 35 A ASN 55 5 1_555 A GLU 37 A GLU 57 5 1_555 A THR 49 A THR 69 5 1_555 A LYS 56 A LYS 76 5 1_555 A ARG 87 A ARG 107 4 1_555 A SER 90 A SER 110 4 1_555 A GA2 301 B GA2 4 1_555 A HOH 535 J HOH 4 1_555 A PHE 154 A PHE 174 3 1_555 A ASN 161 A ASN 181 3 1_555 A SER 164 A SER 184 3 1_555 A LYS 55 A LYS 75 3 1_555 A LYS 56 A LYS 76 3 1_555 A LYS 56 A LYS 76 3 8_555 A GLU 41 A GLU 61 1 1_555 A GLN 165 A GLN 185 4 1_555 A LYS 168 A LYS 188 4 1_555 A HOH 487 J HOH 4 1_555 A HOH 550 J HOH 4 1_555 182 P 63 2 2