0.012438
0.007181
0.000000
-0.000000
0.014362
0.000000
0.000000
-0.000000
0.009056
0.00000
0.00000
0.00000
Minasov, G.
Wawrzak, Z.
Onopriyenko, O.
Skarina, T.
Papazisi, L.
Savchenko, A.
Anderson, W.F.
Center for Structural Genomics of Infectious Diseases (CSGID)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
80.400
80.400
110.418
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
O
N
142
N
C
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
S
C
N
154
N
C
N
155
N
O
N
156
N
C
Y
157
N
C
Y
158
N
N
Y
159
N
C
Y
160
N
C
Y
161
N
N
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
N
N
177
S
C
N
178
N
C
N
179
N
O
N
180
S
C
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
N
N
221
S
C
N
222
N
C
N
223
N
O
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
N
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
N
250
N
C
N
251
N
S
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
O
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
S
N
320
N
O
N
321
N
O
N
322
N
O
N
323
N
O
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
R
C
N
329
N
O
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
N
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
N
379
N
O
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
N
397
N
C
N
398
N
C
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
sing
Y
343
N
doub
N
344
N
sing
Y
345
N
doub
N
346
N
sing
Y
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
TO BE PUBLISHED
0353
1.95 Angstrom Resolution Crystal Structure of N-acetyl-D-glucosamine kinase from Vibrio vulnificus.
10.2210/pdb4db3/pdb
pdb_00004db3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Beryllium lenses
CCD
2011-12-15
MARMOSAIC 300 mm CCD
Diamond
SINGLE WAVELENGTH
M
x-ray
1
0.97856
1.0
21-ID-G
APS
0.97856
SYNCHROTRON
APS BEAMLINE 21-ID-G
35352.152
N-acetyl-D-glucosamine kinase
2.7.1.59
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
35.453
CHLORIDE ION
2
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
193
nat
water
GlcNAc kinase
no
no
MHHHHHHSSGVDLGTENLYFQSNAMYYGFDVGGTKIEFGAFNEKLERVATERVPTPTDDYPLLLETIAGLVAKYDQEFAC
EGKIGLGLPGMEDADDATVLTVNVPAAKGKPLRADLEAKIGRSVKIENDANCFALSEAWDEELQDAPSVMGLILGTGFGG
GLIYEGKVFSGRNNVAGELGHMRLPLDAWFHLGDNAPLLGCGCGKKGCLDSYLSGRGFELLYAHYYGEEKKAIDIIKANA
AGDEKAAEHVERFMELLAICFGNIFTANDPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGA
AFLNIKG
MHHHHHHSSGVDLGTENLYFQSNAMYYGFDVGGTKIEFGAFNEKLERVATERVPTPTDDYPLLLETIAGLVAKYDQEFAC
EGKIGLGLPGMEDADDATVLTVNVPAAKGKPLRADLEAKIGRSVKIENDANCFALSEAWDEELQDAPSVMGLILGTGFGG
GLIYEGKVFSGRNNVAGELGHMRLPLDAWFHLGDNAPLLGCGCGKKGCLDSYLSGRGFELLYAHYYGEEKKAIDIIKANA
AGDEKAAEHVERFMELLAICFGNIFTANDPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGA
AFLNIKG
A
idp91369
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
CMCP6
sample
nagK, VV1_2570
672
Vibrio vulnificus
469008
Escherichia coli
BL21-CodonPlus(DE3)-RIPL
plasmid
pMCSG7
1
2.91
57.79
VAPOR DIFFUSION, HANGING DROP
7.0
Protein solution: 2.5 mG/mL, 0.3M Sodium chloride, 0.01M HEPES pH 7.5. Screen solution: 0.1M Lithium sulfate, 0.1M Bis-Tris Propane pH 7.0.
Cryo: 0.1M Li Sulfate, 0.1M Bis-Tris Propane, 20% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
Center for Structural Genomics of Infectious Diseases
CSGID
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-01-25
1
1
2017-11-15
1
2
2023-09-13
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2012-01-13
REL
REL
ZN
ZINC ION
CL
CHLORIDE ION
SO4
SULFATE ION
GOL
GLYCEROL
HOH
water
2AP1
PDB entry 2AP1
PDB
experimental model
ZN
1
2
ZN
ZN
401
A
CL
2
3
CL
CL
402
A
CL
3
3
CL
CL
403
A
SO4
4
4
SO4
SO4
404
A
GOL
5
5
GOL
GOL
405
A
HOH
6
6
HOH
HOH
501
A
HOH
7
6
HOH
HOH
502
A
HOH
8
6
HOH
HOH
503
A
HOH
9
6
HOH
HOH
504
A
HOH
10
6
HOH
HOH
505
A
HOH
11
6
HOH
HOH
506
A
HOH
12
6
HOH
HOH
507
A
HOH
13
6
HOH
HOH
508
A
HOH
14
6
HOH
HOH
509
A
HOH
15
6
HOH
HOH
510
A
HOH
16
6
HOH
HOH
511
A
HOH
17
6
HOH
HOH
512
A
HOH
18
6
HOH
HOH
513
A
HOH
19
6
HOH
HOH
514
A
HOH
20
6
HOH
HOH
515
A
HOH
21
6
HOH
HOH
516
A
HOH
22
6
HOH
HOH
517
A
HOH
23
6
HOH
HOH
518
A
HOH
24
6
HOH
HOH
519
A
HOH
25
6
HOH
HOH
520
A
HOH
26
6
HOH
HOH
521
A
HOH
27
6
HOH
HOH
522
A
HOH
28
6
HOH
HOH
523
A
HOH
29
6
HOH
HOH
524
A
HOH
30
6
HOH
HOH
525
A
HOH
31
6
HOH
HOH
526
A
HOH
32
6
HOH
HOH
527
A
HOH
33
6
HOH
HOH
528
A
HOH
34
6
HOH
HOH
529
A
HOH
35
6
HOH
HOH
530
A
HOH
36
6
HOH
HOH
531
A
HOH
37
6
HOH
HOH
532
A
HOH
38
6
HOH
HOH
533
A
HOH
39
6
HOH
HOH
534
A
HOH
40
6
HOH
HOH
535
A
HOH
41
6
HOH
HOH
536
A
HOH
42
6
HOH
HOH
537
A
HOH
43
6
HOH
HOH
538
A
HOH
44
6
HOH
HOH
539
A
HOH
45
6
HOH
HOH
540
A
HOH
46
6
HOH
HOH
541
A
HOH
47
6
HOH
HOH
542
A
HOH
48
6
HOH
HOH
543
A
HOH
49
6
HOH
HOH
544
A
HOH
50
6
HOH
HOH
545
A
HOH
51
6
HOH
HOH
546
A
HOH
52
6
HOH
HOH
547
A
HOH
53
6
HOH
HOH
548
A
HOH
54
6
HOH
HOH
549
A
HOH
55
6
HOH
HOH
550
A
HOH
56
6
HOH
HOH
551
A
HOH
57
6
HOH
HOH
552
A
HOH
58
6
HOH
HOH
553
A
HOH
59
6
HOH
HOH
554
A
HOH
60
6
HOH
HOH
555
A
HOH
61
6
HOH
HOH
556
A
HOH
62
6
HOH
HOH
557
A
HOH
63
6
HOH
HOH
558
A
HOH
64
6
HOH
HOH
559
A
HOH
65
6
HOH
HOH
560
A
HOH
66
6
HOH
HOH
561
A
HOH
67
6
HOH
HOH
562
A
HOH
68
6
HOH
HOH
563
A
HOH
69
6
HOH
HOH
564
A
HOH
70
6
HOH
HOH
565
A
HOH
71
6
HOH
HOH
566
A
HOH
72
6
HOH
HOH
567
A
HOH
73
6
HOH
HOH
568
A
HOH
74
6
HOH
HOH
569
A
HOH
75
6
HOH
HOH
570
A
HOH
76
6
HOH
HOH
571
A
HOH
77
6
HOH
HOH
572
A
HOH
78
6
HOH
HOH
573
A
HOH
79
6
HOH
HOH
574
A
HOH
80
6
HOH
HOH
575
A
HOH
81
6
HOH
HOH
576
A
HOH
82
6
HOH
HOH
577
A
HOH
83
6
HOH
HOH
578
A
HOH
84
6
HOH
HOH
579
A
HOH
85
6
HOH
HOH
580
A
HOH
86
6
HOH
HOH
581
A
HOH
87
6
HOH
HOH
582
A
HOH
88
6
HOH
HOH
583
A
HOH
89
6
HOH
HOH
584
A
HOH
90
6
HOH
HOH
585
A
HOH
91
6
HOH
HOH
586
A
HOH
92
6
HOH
HOH
587
A
HOH
93
6
HOH
HOH
588
A
HOH
94
6
HOH
HOH
589
A
HOH
95
6
HOH
HOH
590
A
HOH
96
6
HOH
HOH
591
A
HOH
97
6
HOH
HOH
592
A
HOH
98
6
HOH
HOH
593
A
HOH
99
6
HOH
HOH
594
A
HOH
100
6
HOH
HOH
595
A
HOH
101
6
HOH
HOH
596
A
HOH
102
6
HOH
HOH
597
A
HOH
103
6
HOH
HOH
598
A
HOH
104
6
HOH
HOH
599
A
HOH
105
6
HOH
HOH
600
A
HOH
106
6
HOH
HOH
601
A
HOH
107
6
HOH
HOH
602
A
HOH
108
6
HOH
HOH
603
A
HOH
109
6
HOH
HOH
604
A
HOH
110
6
HOH
HOH
605
A
HOH
111
6
HOH
HOH
606
A
HOH
112
6
HOH
HOH
607
A
HOH
113
6
HOH
HOH
608
A
HOH
114
6
HOH
HOH
609
A
HOH
115
6
HOH
HOH
610
A
HOH
116
6
HOH
HOH
611
A
HOH
117
6
HOH
HOH
612
A
HOH
118
6
HOH
HOH
613
A
HOH
119
6
HOH
HOH
614
A
HOH
120
6
HOH
HOH
615
A
HOH
121
6
HOH
HOH
616
A
HOH
122
6
HOH
HOH
617
A
HOH
123
6
HOH
HOH
618
A
HOH
124
6
HOH
HOH
619
A
HOH
125
6
HOH
HOH
620
A
HOH
126
6
HOH
HOH
621
A
HOH
127
6
HOH
HOH
622
A
HOH
128
6
HOH
HOH
623
A
HOH
129
6
HOH
HOH
624
A
HOH
130
6
HOH
HOH
625
A
HOH
131
6
HOH
HOH
626
A
HOH
132
6
HOH
HOH
627
A
HOH
133
6
HOH
HOH
628
A
HOH
134
6
HOH
HOH
629
A
HOH
135
6
HOH
HOH
630
A
HOH
136
6
HOH
HOH
631
A
HOH
137
6
HOH
HOH
632
A
HOH
138
6
HOH
HOH
633
A
HOH
139
6
HOH
HOH
634
A
HOH
140
6
HOH
HOH
635
A
HOH
141
6
HOH
HOH
636
A
HOH
142
6
HOH
HOH
637
A
HOH
143
6
HOH
HOH
638
A
HOH
144
6
HOH
HOH
639
A
HOH
145
6
HOH
HOH
640
A
HOH
146
6
HOH
HOH
641
A
HOH
147
6
HOH
HOH
642
A
HOH
148
6
HOH
HOH
643
A
HOH
149
6
HOH
HOH
644
A
HOH
150
6
HOH
HOH
645
A
HOH
151
6
HOH
HOH
646
A
HOH
152
6
HOH
HOH
647
A
HOH
153
6
HOH
HOH
648
A
HOH
154
6
HOH
HOH
649
A
HOH
155
6
HOH
HOH
650
A
HOH
156
6
HOH
HOH
651
A
HOH
157
6
HOH
HOH
652
A
HOH
158
6
HOH
HOH
653
A
HOH
159
6
HOH
HOH
654
A
HOH
160
6
HOH
HOH
655
A
HOH
161
6
HOH
HOH
656
A
HOH
162
6
HOH
HOH
657
A
HOH
163
6
HOH
HOH
658
A
HOH
164
6
HOH
HOH
659
A
HOH
165
6
HOH
HOH
660
A
HOH
166
6
HOH
HOH
661
A
HOH
167
6
HOH
HOH
662
A
HOH
168
6
HOH
HOH
663
A
HOH
169
6
HOH
HOH
664
A
HOH
170
6
HOH
HOH
665
A
HOH
171
6
HOH
HOH
666
A
HOH
172
6
HOH
HOH
667
A
HOH
173
6
HOH
HOH
668
A
HOH
174
6
HOH
HOH
669
A
HOH
175
6
HOH
HOH
670
A
HOH
176
6
HOH
HOH
671
A
HOH
177
6
HOH
HOH
672
A
HOH
178
6
HOH
HOH
673
A
HOH
179
6
HOH
HOH
674
A
HOH
180
6
HOH
HOH
675
A
HOH
181
6
HOH
HOH
676
A
HOH
182
6
HOH
HOH
677
A
HOH
183
6
HOH
HOH
678
A
HOH
184
6
HOH
HOH
679
A
HOH
185
6
HOH
HOH
680
A
HOH
186
6
HOH
HOH
681
A
HOH
187
6
HOH
HOH
682
A
HOH
188
6
HOH
HOH
683
A
HOH
189
6
HOH
HOH
684
A
HOH
190
6
HOH
HOH
685
A
HOH
191
6
HOH
HOH
686
A
HOH
192
6
HOH
HOH
687
A
HOH
193
6
HOH
HOH
688
A
HOH
194
6
HOH
HOH
689
A
HOH
195
6
HOH
HOH
690
A
HOH
196
6
HOH
HOH
691
A
HOH
197
6
HOH
HOH
692
A
HOH
198
6
HOH
HOH
693
A
n
1
-23
A
n
2
-22
A
n
3
-21
A
n
4
-20
A
n
5
-19
A
n
6
-18
A
n
7
-17
A
n
8
-16
A
n
9
-15
A
n
10
-14
A
n
11
-13
A
n
12
-12
A
n
13
-11
A
n
14
-10
A
n
15
-9
A
n
16
-8
A
ASN
-7
n
17
ASN
-7
A
LEU
-6
n
18
LEU
-6
A
TYR
-5
n
19
TYR
-5
A
PHE
-4
n
20
PHE
-4
A
GLN
-3
n
21
GLN
-3
A
SER
-2
n
22
SER
-2
A
ASN
-1
n
23
ASN
-1
A
ALA
0
n
24
ALA
0
A
MET
1
n
25
MET
1
A
TYR
2
n
26
TYR
2
A
TYR
3
n
27
TYR
3
A
GLY
4
n
28
GLY
4
A
PHE
5
n
29
PHE
5
A
ASP
6
n
30
ASP
6
A
VAL
7
n
31
VAL
7
A
GLY
8
n
32
GLY
8
A
GLY
9
n
33
GLY
9
A
THR
10
n
34
THR
10
A
LYS
11
n
35
LYS
11
A
ILE
12
n
36
ILE
12
A
GLU
13
n
37
GLU
13
A
PHE
14
n
38
PHE
14
A
GLY
15
n
39
GLY
15
A
ALA
16
n
40
ALA
16
A
PHE
17
n
41
PHE
17
A
ASN
18
n
42
ASN
18
A
GLU
19
n
43
GLU
19
A
LYS
20
n
44
LYS
20
A
LEU
21
n
45
LEU
21
A
GLU
22
n
46
GLU
22
A
ARG
23
n
47
ARG
23
A
VAL
24
n
48
VAL
24
A
ALA
25
n
49
ALA
25
A
THR
26
n
50
THR
26
A
GLU
27
n
51
GLU
27
A
ARG
28
n
52
ARG
28
A
VAL
29
n
53
VAL
29
A
PRO
30
n
54
PRO
30
A
THR
31
n
55
THR
31
A
PRO
32
n
56
PRO
32
A
THR
33
n
57
THR
33
A
ASP
34
n
58
ASP
34
A
ASP
35
n
59
ASP
35
A
TYR
36
n
60
TYR
36
A
PRO
37
n
61
PRO
37
A
LEU
38
n
62
LEU
38
A
LEU
39
n
63
LEU
39
A
LEU
40
n
64
LEU
40
A
GLU
41
n
65
GLU
41
A
THR
42
n
66
THR
42
A
ILE
43
n
67
ILE
43
A
ALA
44
n
68
ALA
44
A
GLY
45
n
69
GLY
45
A
LEU
46
n
70
LEU
46
A
VAL
47
n
71
VAL
47
A
ALA
48
n
72
ALA
48
A
LYS
49
n
73
LYS
49
A
TYR
50
n
74
TYR
50
A
ASP
51
n
75
ASP
51
A
GLN
52
n
76
GLN
52
A
GLU
53
n
77
GLU
53
A
PHE
54
n
78
PHE
54
A
ALA
55
n
79
ALA
55
A
CYS
56
n
80
CYS
56
A
GLU
57
n
81
GLU
57
A
GLY
58
n
82
GLY
58
A
LYS
59
n
83
LYS
59
A
ILE
60
n
84
ILE
60
A
GLY
61
n
85
GLY
61
A
LEU
62
n
86
LEU
62
A
GLY
63
n
87
GLY
63
A
LEU
64
n
88
LEU
64
A
PRO
65
n
89
PRO
65
A
GLY
66
n
90
GLY
66
A
MET
67
n
91
MET
67
A
GLU
68
n
92
GLU
68
A
ASP
69
n
93
ASP
69
A
ALA
70
n
94
ALA
70
A
ASP
71
n
95
ASP
71
A
ASP
72
n
96
ASP
72
A
ALA
73
n
97
ALA
73
A
THR
74
n
98
THR
74
A
VAL
75
n
99
VAL
75
A
LEU
76
n
100
LEU
76
A
THR
77
n
101
THR
77
A
VAL
78
n
102
VAL
78
A
ASN
79
n
103
ASN
79
A
VAL
80
n
104
VAL
80
A
PRO
81
n
105
PRO
81
A
ALA
82
n
106
ALA
82
A
ALA
83
n
107
ALA
83
A
LYS
84
n
108
LYS
84
A
GLY
85
n
109
GLY
85
A
LYS
86
n
110
LYS
86
A
PRO
87
n
111
PRO
87
A
LEU
88
n
112
LEU
88
A
ARG
89
n
113
ARG
89
A
ALA
90
n
114
ALA
90
A
ASP
91
n
115
ASP
91
A
LEU
92
n
116
LEU
92
A
GLU
93
n
117
GLU
93
A
ALA
94
n
118
ALA
94
A
LYS
95
n
119
LYS
95
A
ILE
96
n
120
ILE
96
A
GLY
97
n
121
GLY
97
A
ARG
98
n
122
ARG
98
A
SER
99
n
123
SER
99
A
VAL
100
n
124
VAL
100
A
LYS
101
n
125
LYS
101
A
ILE
102
n
126
ILE
102
A
GLU
103
n
127
GLU
103
A
ASN
104
n
128
ASN
104
A
ASP
105
n
129
ASP
105
A
ALA
106
n
130
ALA
106
A
ASN
107
n
131
ASN
107
A
CYS
108
n
132
CYS
108
A
PHE
109
n
133
PHE
109
A
ALA
110
n
134
ALA
110
A
LEU
111
n
135
LEU
111
A
SER
112
n
136
SER
112
A
GLU
113
n
137
GLU
113
A
ALA
114
n
138
ALA
114
A
TRP
115
n
139
TRP
115
A
ASP
116
n
140
ASP
116
A
GLU
117
n
141
GLU
117
A
GLU
118
n
142
GLU
118
A
LEU
119
n
143
LEU
119
A
GLN
120
n
144
GLN
120
A
ASP
121
n
145
ASP
121
A
ALA
122
n
146
ALA
122
A
PRO
123
n
147
PRO
123
A
SER
124
n
148
SER
124
A
VAL
125
n
149
VAL
125
A
MET
126
n
150
MET
126
A
GLY
127
n
151
GLY
127
A
LEU
128
n
152
LEU
128
A
ILE
129
n
153
ILE
129
A
LEU
130
n
154
LEU
130
A
GLY
131
n
155
GLY
131
A
THR
132
n
156
THR
132
A
GLY
133
n
157
GLY
133
A
PHE
134
n
158
PHE
134
A
GLY
135
n
159
GLY
135
A
GLY
136
n
160
GLY
136
A
GLY
137
n
161
GLY
137
A
LEU
138
n
162
LEU
138
A
ILE
139
n
163
ILE
139
A
TYR
140
n
164
TYR
140
A
GLU
141
n
165
GLU
141
A
GLY
142
n
166
GLY
142
A
LYS
143
n
167
LYS
143
A
VAL
144
n
168
VAL
144
A
PHE
145
n
169
PHE
145
A
SER
146
n
170
SER
146
A
GLY
147
n
171
GLY
147
A
ARG
148
n
172
ARG
148
A
ASN
149
n
173
ASN
149
A
ASN
150
n
174
ASN
150
A
VAL
151
n
175
VAL
151
A
ALA
152
n
176
ALA
152
A
GLY
153
n
177
GLY
153
A
GLU
154
n
178
GLU
154
A
LEU
155
n
179
LEU
155
A
GLY
156
n
180
GLY
156
A
HIS
157
n
181
HIS
157
A
MET
158
n
182
MET
158
A
ARG
159
n
183
ARG
159
A
LEU
160
n
184
LEU
160
A
PRO
161
n
185
PRO
161
A
LEU
162
n
186
LEU
162
A
ASP
163
n
187
ASP
163
A
ALA
164
n
188
ALA
164
A
TRP
165
n
189
TRP
165
A
PHE
166
n
190
PHE
166
A
HIS
167
n
191
HIS
167
A
LEU
168
n
192
LEU
168
A
GLY
169
n
193
GLY
169
A
ASP
170
n
194
ASP
170
A
ASN
171
n
195
ASN
171
A
ALA
172
n
196
ALA
172
A
PRO
173
n
197
PRO
173
A
LEU
174
n
198
LEU
174
A
LEU
175
n
199
LEU
175
A
GLY
176
n
200
GLY
176
A
CYS
177
n
201
CYS
177
A
GLY
178
n
202
GLY
178
A
CYS
179
n
203
CYS
179
A
GLY
180
n
204
GLY
180
A
LYS
181
n
205
LYS
181
A
LYS
182
n
206
LYS
182
A
GLY
183
n
207
GLY
183
A
CYS
184
n
208
CYS
184
A
LEU
185
n
209
LEU
185
A
ASP
186
n
210
ASP
186
A
SER
187
n
211
SER
187
A
TYR
188
n
212
TYR
188
A
LEU
189
n
213
LEU
189
A
SER
190
n
214
SER
190
A
GLY
191
n
215
GLY
191
A
ARG
192
n
216
ARG
192
A
GLY
193
n
217
GLY
193
A
PHE
194
n
218
PHE
194
A
GLU
195
n
219
GLU
195
A
LEU
196
n
220
LEU
196
A
LEU
197
n
221
LEU
197
A
TYR
198
n
222
TYR
198
A
ALA
199
n
223
ALA
199
A
HIS
200
n
224
HIS
200
A
TYR
201
n
225
TYR
201
A
TYR
202
n
226
TYR
202
A
GLY
203
n
227
GLY
203
A
GLU
204
n
228
GLU
204
A
GLU
205
n
229
GLU
205
A
LYS
206
n
230
LYS
206
A
LYS
207
n
231
LYS
207
A
ALA
208
n
232
ALA
208
A
ILE
209
n
233
ILE
209
A
ASP
210
n
234
ASP
210
A
ILE
211
n
235
ILE
211
A
ILE
212
n
236
ILE
212
A
LYS
213
n
237
LYS
213
A
ALA
214
n
238
ALA
214
A
ASN
215
n
239
ASN
215
A
ALA
216
n
240
ALA
216
A
ALA
217
n
241
ALA
217
A
GLY
218
n
242
GLY
218
A
ASP
219
n
243
ASP
219
A
GLU
220
n
244
GLU
220
A
LYS
221
n
245
LYS
221
A
ALA
222
n
246
ALA
222
A
ALA
223
n
247
ALA
223
A
GLU
224
n
248
GLU
224
A
HIS
225
n
249
HIS
225
A
VAL
226
n
250
VAL
226
A
GLU
227
n
251
GLU
227
A
ARG
228
n
252
ARG
228
A
PHE
229
n
253
PHE
229
A
MET
230
n
254
MET
230
A
GLU
231
n
255
GLU
231
A
LEU
232
n
256
LEU
232
A
LEU
233
n
257
LEU
233
A
ALA
234
n
258
ALA
234
A
ILE
235
n
259
ILE
235
A
CYS
236
n
260
CYS
236
A
PHE
237
n
261
PHE
237
A
GLY
238
n
262
GLY
238
A
ASN
239
n
263
ASN
239
A
ILE
240
n
264
ILE
240
A
PHE
241
n
265
PHE
241
A
THR
242
n
266
THR
242
A
ALA
243
n
267
ALA
243
A
ASN
244
n
268
ASN
244
A
ASP
245
n
269
ASP
245
A
PRO
246
n
270
PRO
246
A
HIS
247
n
271
HIS
247
A
VAL
248
n
272
VAL
248
A
VAL
249
n
273
VAL
249
A
ALA
250
n
274
ALA
250
A
LEU
251
n
275
LEU
251
A
GLY
252
n
276
GLY
252
A
GLY
253
n
277
GLY
253
A
GLY
254
n
278
GLY
254
A
LEU
255
n
279
LEU
255
A
SER
256
n
280
SER
256
A
ASN
257
n
281
ASN
257
A
PHE
258
n
282
PHE
258
A
GLU
259
n
283
GLU
259
A
LEU
260
n
284
LEU
260
A
ILE
261
n
285
ILE
261
A
TYR
262
n
286
TYR
262
A
GLU
263
n
287
GLU
263
A
GLU
264
n
288
GLU
264
A
MET
265
n
289
MET
265
A
PRO
266
n
290
PRO
266
A
LYS
267
n
291
LYS
267
A
ARG
268
n
292
ARG
268
A
VAL
269
n
293
VAL
269
A
PRO
270
n
294
PRO
270
A
LYS
271
n
295
LYS
271
A
TYR
272
n
296
TYR
272
A
LEU
273
n
297
LEU
273
A
LEU
274
n
298
LEU
274
A
SER
275
n
299
SER
275
A
VAL
276
n
300
VAL
276
A
ALA
277
n
301
ALA
277
A
LYS
278
n
302
LYS
278
A
CYS
279
n
303
CYS
279
A
PRO
280
n
304
PRO
280
A
LYS
281
n
305
LYS
281
A
ILE
282
n
306
ILE
282
A
ILE
283
n
307
ILE
283
A
LYS
284
n
308
LYS
284
A
ALA
285
n
309
ALA
285
A
LYS
286
n
310
LYS
286
A
HIS
287
n
311
HIS
287
A
GLY
288
n
312
GLY
288
A
ASP
289
n
313
ASP
289
A
SER
290
n
314
SER
290
A
GLY
291
n
315
GLY
291
A
GLY
292
n
316
GLY
292
A
VAL
293
n
317
VAL
293
A
ARG
294
n
318
ARG
294
A
GLY
295
n
319
GLY
295
A
ALA
296
n
320
ALA
296
A
ALA
297
n
321
ALA
297
A
PHE
298
n
322
PHE
298
A
LEU
299
n
323
LEU
299
A
ASN
300
n
324
ASN
300
A
ILE
301
n
325
ILE
301
A
LYS
302
n
326
LYS
302
A
GLY
303
n
327
GLY
303
A
18.0910
-9.8817
5.0632
8.3648
-6.6378
17.6126
0.1571
0.8579
0.3571
-0.6008
-0.3119
-0.5042
-0.5232
-0.8897
0.1548
0.4689
0.0252
-0.0326
0.4941
0.1603
0.3499
refined
20.6280
9.1107
66.7995
X-RAY DIFFRACTION
2.6455
0.2386
-0.1016
2.3972
-0.6626
1.1358
0.1479
-0.2583
-0.2151
-0.0334
-0.0653
0.1786
0.3533
-0.1645
-0.0826
0.2274
-0.0696
-0.0916
0.0998
0.0573
0.1230
refined
6.6842
13.6421
49.8605
X-RAY DIFFRACTION
3.1121
0.1579
-0.8910
2.2455
-1.9986
3.5036
0.1732
-0.2181
-0.3172
-0.1600
-0.1621
-0.2703
0.3219
0.2220
-0.0111
0.1595
0.0655
-0.0413
0.0630
0.0367
0.1367
refined
23.1114
23.2197
42.6031
X-RAY DIFFRACTION
2.3624
0.5095
-0.2959
2.0352
0.0888
2.1016
-0.0240
0.3855
-0.1786
-0.5820
0.1347
0.0245
0.2318
-0.0470
-0.1107
0.2842
0.0342
-0.0480
0.1044
-0.0303
0.0555
refined
16.5755
28.4623
23.6451
X-RAY DIFFRACTION
2.2868
0.2457
0.1761
2.6063
0.2313
3.3589
0.0222
0.3813
-0.6148
-0.7533
0.0107
-0.2551
0.6176
0.1930
-0.0329
0.4869
0.1013
0.1025
0.1220
-0.1152
0.2480
refined
29.3155
19.4288
22.5622
X-RAY DIFFRACTION
3.2944
2.3808
-2.1910
3.2696
-2.0076
3.5749
0.0562
-0.3435
-0.3953
-0.2697
-0.1835
-0.3600
0.3959
0.3914
0.1273
0.1788
0.0605
-0.0345
0.0964
0.0187
0.1278
refined
26.3039
22.3790
42.4375
X-RAY DIFFRACTION
A
-7
A
0
X-RAY DIFFRACTION
1
A
1
A
104
X-RAY DIFFRACTION
2
A
105
A
143
X-RAY DIFFRACTION
3
A
144
A
189
X-RAY DIFFRACTION
4
A
190
A
272
X-RAY DIFFRACTION
5
A
273
A
303
X-RAY DIFFRACTION
6
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
5230
-76
26250
A
HIS
157
A
ND1
HIS
181
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
177
A
SG
CYS
201
1_555
97.7
A
HIS
157
A
ND1
HIS
181
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
179
A
SG
CYS
203
1_555
110.0
A
CYS
177
A
SG
CYS
201
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
179
A
SG
CYS
203
1_555
108.1
A
HIS
157
A
ND1
HIS
181
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
184
A
SG
CYS
208
1_555
120.5
A
CYS
177
A
SG
CYS
201
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
184
A
SG
CYS
208
1_555
110.5
A
CYS
179
A
SG
CYS
203
1_555
A
ZN
401
B
ZN
ZN
1_555
A
CYS
184
A
SG
CYS
208
1_555
109.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_665
-x+1,-y+1,z
crystal symmetry operation
40.2000000000
69.6284424643
0.0000000000
A
O
GLU
27
A
O
GLU
51
A
N
PHE
14
A
N
PHE
38
A
O
GLY
15
A
O
GLY
39
A
N
GLY
4
A
N
GLY
28
A
N
TYR
3
A
N
TYR
27
A
O
LYS
59
A
O
LYS
83
A
N
LEU
62
A
N
LEU
86
A
O
LYS
101
A
O
LYS
125
A
N
MET
67
A
N
MET
91
A
O
LEU
76
A
O
LEU
100
A
O
LYS
143
A
O
LYS
167
A
N
TYR
140
A
N
TYR
164
A
O
ILE
139
A
O
ILE
163
A
N
VAL
125
A
N
VAL
149
A
N
LEU
130
A
N
LEU
154
A
O
GLY
252
A
O
GLY
276
A
N
VAL
249
A
N
VAL
273
A
O
ILE
283
A
O
ILE
307
1
A
MET
-23
A
MET
1
1
Y
1
A
HIS
-22
A
HIS
2
1
Y
1
A
HIS
-21
A
HIS
3
1
Y
1
A
HIS
-20
A
HIS
4
1
Y
1
A
HIS
-19
A
HIS
5
1
Y
1
A
HIS
-18
A
HIS
6
1
Y
1
A
HIS
-17
A
HIS
7
1
Y
1
A
SER
-16
A
SER
8
1
Y
1
A
SER
-15
A
SER
9
1
Y
1
A
GLY
-14
A
GLY
10
1
Y
1
A
VAL
-13
A
VAL
11
1
Y
1
A
ASP
-12
A
ASP
12
1
Y
1
A
LEU
-11
A
LEU
13
1
Y
1
A
GLY
-10
A
GLY
14
1
Y
1
A
THR
-9
A
THR
15
1
Y
1
A
GLU
-8
A
GLU
16
1
Y
1
A
ASP
34
32.40
51.55
1
A
ASP
245
34.06
57.93
36.376
1.53
0.77
-0.00
1.53
-0.00
-2.30
0.971
0.962
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.19848
0.16848
0.17011
0.17011
1.95
29.45
1498
27919
27919
5.1
99.94
7.262
0.094
RANDOM
1
Thermal Factors Individually Refined
THROUGHOUT
MOLECULAR REPLACEMENT
0.129
0.120
0.80
0.80
1.20
PDB entry 2AP1
MAXIMUM LIKELIHOOD
MASK
1.95
29.45
193
2565
14
0
2358
0.011
0.022
2456
0.001
0.020
1664
1.453
1.981
3323
0.895
3.000
4072
2.972
5.000
320
32.618
24.811
106
10.158
15.000
408
11.856
15.000
10
0.096
0.200
355
0.005
0.021
2808
0.001
0.020
492
1.029
1.500
1559
0.317
1.500
657
1.750
2.000
2475
2.922
3.000
897
4.623
4.500
848
0.262
0.256
2.001
110
2024
2024
20
99.77
32.7
1.95
30.0
4DB3
29453
29453
-3.0
0.052
1
23.1
4.8
99.9
0.557
1.95
1.98
2.0
1434
1
4.8
100.0
data collection
Blu-Ice
Max
phasing
PHASER
refinement
REFMAC
5.5.0102
data reduction
HKL-2000
data scaling
HKL-2000
1.95 Angstrom Resolution Crystal Structure of N-acetyl-D-glucosamine kinase from Vibrio vulnificus.
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
ASP
35
A
ASP
59
HELX_P
A
ALA
55
A
ALA
79
1
1
21
A
VAL
80
A
VAL
104
HELX_P
A
LYS
84
A
LYS
108
5
2
5
A
PRO
87
A
PRO
111
HELX_P
A
GLY
97
A
GLY
121
1
3
11
A
ASP
105
A
ASP
129
HELX_P
A
TRP
115
A
TRP
139
1
4
11
A
GLU
154
A
GLU
178
HELX_P
A
MET
158
A
MET
182
5
5
5
A
PRO
161
A
PRO
185
HELX_P
A
LEU
168
A
LEU
192
1
6
8
A
CYS
184
A
CYS
208
HELX_P
A
TYR
188
A
TYR
212
5
7
5
A
SER
190
A
SER
214
HELX_P
A
GLY
203
A
GLY
227
1
8
14
A
LYS
207
A
LYS
231
HELX_P
A
GLY
218
A
GLY
242
1
9
12
A
ASP
219
A
ASP
243
HELX_P
A
ASP
245
A
ASP
269
1
10
27
A
GLY
253
A
GLY
277
HELX_P
A
PHE
258
A
PHE
282
5
11
6
A
GLU
259
A
GLU
283
HELX_P
A
VAL
269
A
VAL
293
1
12
11
A
PRO
270
A
PRO
294
HELX_P
A
LEU
273
A
LEU
297
5
13
4
A
HIS
287
A
HIS
311
HELX_P
A
ASP
289
A
ASP
313
5
14
3
A
SER
290
A
SER
314
HELX_P
A
LEU
299
A
LEU
323
1
15
10
metalc
2.218
A
HIS
157
A
ND1
HIS
181
1_555
A
ZN
401
B
ZN
ZN
1_555
metalc
2.423
A
CYS
177
A
SG
CYS
201
1_555
A
ZN
401
B
ZN
ZN
1_555
metalc
2.300
A
CYS
179
A
SG
CYS
203
1_555
A
ZN
401
B
ZN
ZN
1_555
metalc
2.272
A
CYS
184
A
SG
CYS
208
1_555
A
ZN
401
B
ZN
ZN
1_555
TRANSFERASE
Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, TRANSFERASE
NAGK_VIBVU
UNP
1
1
Q8D9M7
MYYGFDVGGTKIEFGAFNEKLERVATERVPTPTDDYPLLLETIAGLVAKYDQEFACEGKIGLGLPGMEDADDATVLTVNV
PAAKGKPLRADLEAKIGRSVKIENDANCFALSEAWDEELQDAPSVMGLILGTGFGGGLIYEGKVFSGRNNVAGELGHMRL
PLDAWFHLGDNAPLLGCGCGKKGCLDSYLSGRGFELLYAHYYGEEKKAIDIIKANAAGDEKAAEHVERFMELLAICFGNI
FTANDPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLNIKG
1
303
4DB3
1
303
Q8D9M7
A
1
25
327
1
expression tag
MET
-23
4DB3
A
Q8D9M7
UNP
1
1
expression tag
HIS
-22
4DB3
A
Q8D9M7
UNP
2
1
expression tag
HIS
-21
4DB3
A
Q8D9M7
UNP
3
1
expression tag
HIS
-20
4DB3
A
Q8D9M7
UNP
4
1
expression tag
HIS
-19
4DB3
A
Q8D9M7
UNP
5
1
expression tag
HIS
-18
4DB3
A
Q8D9M7
UNP
6
1
expression tag
HIS
-17
4DB3
A
Q8D9M7
UNP
7
1
expression tag
SER
-16
4DB3
A
Q8D9M7
UNP
8
1
expression tag
SER
-15
4DB3
A
Q8D9M7
UNP
9
1
expression tag
GLY
-14
4DB3
A
Q8D9M7
UNP
10
1
expression tag
VAL
-13
4DB3
A
Q8D9M7
UNP
11
1
expression tag
ASP
-12
4DB3
A
Q8D9M7
UNP
12
1
expression tag
LEU
-11
4DB3
A
Q8D9M7
UNP
13
1
expression tag
GLY
-10
4DB3
A
Q8D9M7
UNP
14
1
expression tag
THR
-9
4DB3
A
Q8D9M7
UNP
15
1
expression tag
GLU
-8
4DB3
A
Q8D9M7
UNP
16
1
expression tag
ASN
-7
4DB3
A
Q8D9M7
UNP
17
1
expression tag
LEU
-6
4DB3
A
Q8D9M7
UNP
18
1
expression tag
TYR
-5
4DB3
A
Q8D9M7
UNP
19
1
expression tag
PHE
-4
4DB3
A
Q8D9M7
UNP
20
1
expression tag
GLN
-3
4DB3
A
Q8D9M7
UNP
21
1
expression tag
SER
-2
4DB3
A
Q8D9M7
UNP
22
1
expression tag
ASN
-1
4DB3
A
Q8D9M7
UNP
23
1
expression tag
ALA
0
4DB3
A
Q8D9M7
UNP
24
5
2
5
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
A
ARG
23
A
ARG
47
A
PRO
30
A
PRO
54
A
LYS
11
A
LYS
35
A
PHE
17
A
PHE
41
A
TYR
2
A
TYR
26
A
VAL
7
A
VAL
31
A
LYS
59
A
LYS
83
A
LEU
64
A
LEU
88
A
LYS
101
A
LYS
125
A
ASN
104
A
ASN
128
A
GLY
66
A
GLY
90
A
GLU
68
A
GLU
92
A
VAL
75
A
VAL
99
A
THR
77
A
THR
101
A
LYS
143
A
LYS
167
A
VAL
144
A
VAL
168
A
PHE
134
A
PHE
158
A
TYR
140
A
TYR
164
A
SER
124
A
SER
148
A
LEU
130
A
LEU
154
A
VAL
248
A
VAL
272
A
GLY
252
A
GLY
276
A
LYS
281
A
LYS
305
A
LYS
284
A
LYS
308
BINDING SITE FOR RESIDUE ZN A 401
A
ZN
401
Software
4
BINDING SITE FOR RESIDUE CL A 402
A
CL
402
Software
1
BINDING SITE FOR RESIDUE CL A 403
A
CL
403
Software
1
BINDING SITE FOR RESIDUE SO4 A 404
A
SO4
404
Software
3
BINDING SITE FOR RESIDUE GOL A 405
A
GOL
405
Software
9
A
HIS
157
A
HIS
181
4
1_555
A
CYS
177
A
CYS
201
4
1_555
A
CYS
179
A
CYS
203
4
1_555
A
CYS
184
A
CYS
208
4
1_555
A
ARG
294
A
ARG
318
1
1_555
A
GLY
254
A
GLY
278
1
1_555
A
ARG
98
A
ARG
122
3
1_555
A
SER
99
A
SER
123
3
1_555
A
HOH
561
G
HOH
3
1_555
A
PRO
123
A
PRO
147
9
4_665
A
VAL
144
A
VAL
168
9
1_555
A
PHE
145
A
PHE
169
9
1_555
A
SER
146
A
SER
170
9
1_555
A
GLY
147
A
GLY
171
9
1_555
A
HIS
247
A
HIS
271
9
4_665
A
HOH
563
G
HOH
9
1_555
A
HOH
582
G
HOH
9
4_665
A
HOH
634
G
HOH
9
1_555
172
P 64