0.017831
0.000000
0.000000
0.000000
0.017063
0.000000
0.000000
0.000000
0.009260
0.000000
0.000000
0.000000
Lovell, S.
Battaile, K.P.
Kim, Y.
Tiew, K.-C.
Mandadapu, S.R.
Alliston, K.R.
Groutas, W.C.
Chang, K.O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
56.083
58.607
107.991
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C4 H10 O2 S2
154.251
2,3-DIHYDROXY-1,4-DITHIOBUTANE
1,4-DITHIOTHREITOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C21 H31 N3 O8 S
485.551
(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid
GC376
peptide-like
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
S
N
89
N
C
N
90
R
C
N
91
N
O
N
92
R
C
N
93
N
O
N
94
N
C
N
95
N
S
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
C
N
112
N
C
N
113
N
O
N
114
N
N
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
N
N
127
S
C
N
128
N
C
N
129
N
O
N
130
N
C
N
131
N
C
N
132
N
C
N
133
N
O
N
134
N
O
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
N
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
N
N
156
S
C
N
157
N
C
N
158
N
O
N
159
N
C
Y
160
N
C
Y
161
N
N
Y
162
N
C
Y
163
N
C
Y
164
N
N
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
S
C
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
C
N
202
N
O
N
203
N
C
N
204
N
O
Y
205
N
C
Y
206
N
C
Y
207
N
C
Y
208
N
C
Y
209
N
C
Y
210
N
C
N
211
N
N
N
212
S
C
N
213
N
C
N
214
N
O
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
C
N
219
N
N
N
220
S
C
N
221
S
C
N
222
N
O
N
223
N
C
N
224
S
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
C
N
229
N
O
N
230
N
S
N
231
N
O
N
232
N
O
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
N
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
C
N
318
N
S
N
319
N
C
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
N
360
N
C
N
361
N
C
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
O
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
S
N
387
N
O
N
388
N
O
N
389
N
O
N
390
N
O
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
R
C
N
396
N
O
N
397
N
C
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
N
419
N
O
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
N
437
N
C
N
438
N
C
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
Y
157
N
sing
Y
158
N
doub
Y
159
N
doub
N
160
N
sing
Y
161
N
sing
N
162
N
sing
Y
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
Y
239
N
sing
Y
240
N
doub
Y
241
N
sing
Y
242
N
doub
Y
243
N
sing
Y
244
N
doub
N
245
N
sing
N
246
N
doub
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
US
J.Virol.
JOVIAM
0825
0022-538X
86
11754
11762
10.1128/JVI.01348-12
22915796
Broad-Spectrum Antivirals against 3C or 3C-Like Proteases of Picornaviruses, Noroviruses, and Coronaviruses.
2012
10.2210/pdb4dcd/pdb
pdb_00004dcd
100
1
PIXEL
2011-10-16
DECTRIS PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
17-ID
APS
1.0000
SYNCHROTRON
APS BEAMLINE 17-ID
20607.389
Genome polyprotein
3.4.22.28
unp residues 1566-1748
1
man
polymer
154.251
2,3-DIHYDROXY-1,4-DITHIOBUTANE
1
syn
non-polymer
485.551
(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid
1
syn
non-polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
130
nat
water
Protease 3C
no
no
MHHHHHHGPGFDYAVAMAKRNIVTATTSKGEFTMLGVHDNVAILPTHASPGESIVIDGKEVEILDAKALEDQAGTNLEIT
IITLKRNEKFRDIRPHIPTQITETNDGVLIVNTSKYPNMYVPVGAVTEQGYLNLGGRQTARTLMYNFPTRAGQCGGVITC
TGKVIGMHVGGNGSHGFAAALKRSYFTQSQ
MHHHHHHGPGFDYAVAMAKRNIVTATTSKGEFTMLGVHDNVAILPTHASPGESIVIDGKEVEILDAKALEDQAGTNLEIT
IITLKRNEKFRDIRPHIPTQITETNDGVLIVNTSKYPNMYVPVGAVTEQGYLNLGGRQTARTLMYNFPTRAGQCGGVITC
TGKVIGMHVGGNGSHGFAAALKRSYFTQSQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Mahoney
sample
12081
Human poliovirus 1
511693
Escherichia coli
BL21
plasmid
pET28
1
2.15
42.87
VAPOR DIFFUSION, SITTING DROP
6.5
30% (w/v) PEG 5000 MME, 100 mM MES, 200 mM ammonium sulfate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
pdbx_unobs_or_zero_occ_atoms
software
chem_comp
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Database references
Advisory
Refinement description
Database references
Derived calculations
Structure summary
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-09-05
1
1
2012-11-14
1
2
2017-11-15
1
3
2020-05-20
1
4
2023-09-13
_software.name
_chem_comp.pdbx_synonyms
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-01-17
REL
REL
DTT
2,3-DIHYDROXY-1,4-DITHIOBUTANE
K36
(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid
SO4
SULFATE ION
HOH
water
WHEN THE K36 LIGAND IS MIXED WITH THE POLIOVIRUS PROTEASE, IT FORMS A COVALENT COMPLEX WITH A LINKAGE BETWEEN C21 OF THE LIGAND AND THE SULFUR ATOM (SG) OF CYS147. THE BISULFITE FUNCTIONAL GROUP IS REMOVED DURING THIS REACTION.
1L1N
pdb entry 1L1N
PDB
experimental model
DTT
1
2
DTT
DTT
201
A
K36
1
3
K36
K36
202
A
SO4
1
4
SO4
SO4
203
A
SO4
2
4
SO4
SO4
204
A
HOH
1
5
HOH
HOH
301
A
HOH
2
5
HOH
HOH
302
A
HOH
3
5
HOH
HOH
303
A
HOH
4
5
HOH
HOH
304
A
HOH
5
5
HOH
HOH
305
A
HOH
6
5
HOH
HOH
306
A
HOH
7
5
HOH
HOH
307
A
HOH
8
5
HOH
HOH
308
A
HOH
9
5
HOH
HOH
309
A
HOH
10
5
HOH
HOH
310
A
HOH
11
5
HOH
HOH
311
A
HOH
12
5
HOH
HOH
312
A
HOH
13
5
HOH
HOH
313
A
HOH
14
5
HOH
HOH
314
A
HOH
15
5
HOH
HOH
315
A
HOH
16
5
HOH
HOH
316
A
HOH
17
5
HOH
HOH
317
A
HOH
18
5
HOH
HOH
318
A
HOH
19
5
HOH
HOH
319
A
HOH
20
5
HOH
HOH
320
A
HOH
21
5
HOH
HOH
321
A
HOH
22
5
HOH
HOH
322
A
HOH
23
5
HOH
HOH
323
A
HOH
24
5
HOH
HOH
324
A
HOH
25
5
HOH
HOH
325
A
HOH
26
5
HOH
HOH
326
A
HOH
27
5
HOH
HOH
327
A
HOH
28
5
HOH
HOH
328
A
HOH
29
5
HOH
HOH
329
A
HOH
30
5
HOH
HOH
330
A
HOH
31
5
HOH
HOH
331
A
HOH
32
5
HOH
HOH
332
A
HOH
33
5
HOH
HOH
333
A
HOH
34
5
HOH
HOH
334
A
HOH
35
5
HOH
HOH
335
A
HOH
36
5
HOH
HOH
336
A
HOH
37
5
HOH
HOH
337
A
HOH
38
5
HOH
HOH
338
A
HOH
39
5
HOH
HOH
339
A
HOH
40
5
HOH
HOH
340
A
HOH
41
5
HOH
HOH
341
A
HOH
42
5
HOH
HOH
342
A
HOH
43
5
HOH
HOH
343
A
HOH
44
5
HOH
HOH
344
A
HOH
45
5
HOH
HOH
345
A
HOH
46
5
HOH
HOH
346
A
HOH
47
5
HOH
HOH
347
A
HOH
48
5
HOH
HOH
348
A
HOH
49
5
HOH
HOH
349
A
HOH
50
5
HOH
HOH
350
A
HOH
51
5
HOH
HOH
351
A
HOH
52
5
HOH
HOH
352
A
HOH
53
5
HOH
HOH
353
A
HOH
54
5
HOH
HOH
354
A
HOH
55
5
HOH
HOH
355
A
HOH
56
5
HOH
HOH
356
A
HOH
57
5
HOH
HOH
357
A
HOH
58
5
HOH
HOH
358
A
HOH
59
5
HOH
HOH
359
A
HOH
60
5
HOH
HOH
360
A
HOH
61
5
HOH
HOH
361
A
HOH
62
5
HOH
HOH
362
A
HOH
63
5
HOH
HOH
363
A
HOH
64
5
HOH
HOH
364
A
HOH
65
5
HOH
HOH
365
A
HOH
66
5
HOH
HOH
366
A
HOH
67
5
HOH
HOH
367
A
HOH
68
5
HOH
HOH
368
A
HOH
69
5
HOH
HOH
369
A
HOH
70
5
HOH
HOH
370
A
HOH
71
5
HOH
HOH
371
A
HOH
72
5
HOH
HOH
372
A
HOH
73
5
HOH
HOH
373
A
HOH
74
5
HOH
HOH
374
A
HOH
75
5
HOH
HOH
375
A
HOH
76
5
HOH
HOH
376
A
HOH
77
5
HOH
HOH
377
A
HOH
78
5
HOH
HOH
378
A
HOH
79
5
HOH
HOH
379
A
HOH
80
5
HOH
HOH
380
A
HOH
81
5
HOH
HOH
381
A
HOH
82
5
HOH
HOH
382
A
HOH
83
5
HOH
HOH
383
A
HOH
84
5
HOH
HOH
384
A
HOH
85
5
HOH
HOH
385
A
HOH
86
5
HOH
HOH
386
A
HOH
87
5
HOH
HOH
387
A
HOH
88
5
HOH
HOH
388
A
HOH
89
5
HOH
HOH
389
A
HOH
90
5
HOH
HOH
390
A
HOH
91
5
HOH
HOH
391
A
HOH
92
5
HOH
HOH
392
A
HOH
93
5
HOH
HOH
393
A
HOH
94
5
HOH
HOH
394
A
HOH
95
5
HOH
HOH
395
A
HOH
96
5
HOH
HOH
396
A
HOH
97
5
HOH
HOH
397
A
HOH
98
5
HOH
HOH
398
A
HOH
99
5
HOH
HOH
399
A
HOH
100
5
HOH
HOH
400
A
HOH
101
5
HOH
HOH
401
A
HOH
102
5
HOH
HOH
402
A
HOH
103
5
HOH
HOH
403
A
HOH
104
5
HOH
HOH
404
A
HOH
105
5
HOH
HOH
405
A
HOH
106
5
HOH
HOH
406
A
HOH
107
5
HOH
HOH
407
A
HOH
108
5
HOH
HOH
408
A
HOH
109
5
HOH
HOH
409
A
HOH
110
5
HOH
HOH
410
A
HOH
111
5
HOH
HOH
411
A
HOH
112
5
HOH
HOH
412
A
HOH
113
5
HOH
HOH
413
A
HOH
114
5
HOH
HOH
414
A
HOH
115
5
HOH
HOH
415
A
HOH
116
5
HOH
HOH
416
A
HOH
117
5
HOH
HOH
417
A
HOH
118
5
HOH
HOH
418
A
HOH
119
5
HOH
HOH
419
A
HOH
120
5
HOH
HOH
420
A
HOH
121
5
HOH
HOH
421
A
HOH
122
5
HOH
HOH
422
A
HOH
123
5
HOH
HOH
423
A
HOH
124
5
HOH
HOH
424
A
HOH
125
5
HOH
HOH
425
A
HOH
126
5
HOH
HOH
426
A
HOH
127
5
HOH
HOH
427
A
HOH
128
5
HOH
HOH
428
A
HOH
129
5
HOH
HOH
429
A
HOH
130
5
HOH
HOH
430
A
2.500
2.500
51.510
51.510
n
1
-6
A
n
2
-5
A
n
3
-4
A
HIS
-3
n
4
HIS
-3
A
HIS
-2
n
5
HIS
-2
A
HIS
-1
n
6
HIS
-1
A
HIS
0
n
7
HIS
0
A
GLY
1
n
8
GLY
1
A
PRO
2
n
9
PRO
2
A
GLY
3
n
10
GLY
3
A
PHE
4
n
11
PHE
4
A
ASP
5
n
12
ASP
5
A
TYR
6
n
13
TYR
6
A
ALA
7
n
14
ALA
7
A
VAL
8
n
15
VAL
8
A
ALA
9
n
16
ALA
9
A
MET
10
n
17
MET
10
A
ALA
11
n
18
ALA
11
A
LYS
12
n
19
LYS
12
A
ARG
13
n
20
ARG
13
A
ASN
14
n
21
ASN
14
A
ILE
15
n
22
ILE
15
A
VAL
16
n
23
VAL
16
A
THR
17
n
24
THR
17
A
ALA
18
n
25
ALA
18
A
THR
19
n
26
THR
19
A
THR
20
n
27
THR
20
A
SER
21
n
28
SER
21
A
LYS
22
n
29
LYS
22
A
GLY
23
n
30
GLY
23
A
GLU
24
n
31
GLU
24
A
PHE
25
n
32
PHE
25
A
THR
26
n
33
THR
26
A
MET
27
n
34
MET
27
A
LEU
28
n
35
LEU
28
A
GLY
29
n
36
GLY
29
A
VAL
30
n
37
VAL
30
A
HIS
31
n
38
HIS
31
A
ASP
32
n
39
ASP
32
A
ASN
33
n
40
ASN
33
A
VAL
34
n
41
VAL
34
A
ALA
35
n
42
ALA
35
A
ILE
36
n
43
ILE
36
A
LEU
37
n
44
LEU
37
A
PRO
38
n
45
PRO
38
A
THR
39
n
46
THR
39
A
HIS
40
n
47
HIS
40
A
ALA
41
n
48
ALA
41
A
SER
42
n
49
SER
42
A
PRO
43
n
50
PRO
43
A
GLY
44
n
51
GLY
44
A
GLU
45
n
52
GLU
45
A
SER
46
n
53
SER
46
A
ILE
47
n
54
ILE
47
A
VAL
48
n
55
VAL
48
A
ILE
49
n
56
ILE
49
A
ASP
50
n
57
ASP
50
A
GLY
51
n
58
GLY
51
A
LYS
52
n
59
LYS
52
A
GLU
53
n
60
GLU
53
A
VAL
54
n
61
VAL
54
A
GLU
55
n
62
GLU
55
A
ILE
56
n
63
ILE
56
A
LEU
57
n
64
LEU
57
A
ASP
58
n
65
ASP
58
A
ALA
59
n
66
ALA
59
A
LYS
60
n
67
LYS
60
A
ALA
61
n
68
ALA
61
A
LEU
62
n
69
LEU
62
A
GLU
63
n
70
GLU
63
A
ASP
64
n
71
ASP
64
A
GLN
65
n
72
GLN
65
A
ALA
66
n
73
ALA
66
A
GLY
67
n
74
GLY
67
A
THR
68
n
75
THR
68
A
ASN
69
n
76
ASN
69
A
LEU
70
n
77
LEU
70
A
GLU
71
n
78
GLU
71
A
ILE
72
n
79
ILE
72
A
THR
73
n
80
THR
73
A
ILE
74
n
81
ILE
74
A
ILE
75
n
82
ILE
75
A
THR
76
n
83
THR
76
A
LEU
77
n
84
LEU
77
A
LYS
78
n
85
LYS
78
A
ARG
79
n
86
ARG
79
A
ASN
80
n
87
ASN
80
A
GLU
81
n
88
GLU
81
A
LYS
82
n
89
LYS
82
A
PHE
83
n
90
PHE
83
A
ARG
84
n
91
ARG
84
A
ASP
85
n
92
ASP
85
A
ILE
86
n
93
ILE
86
A
ARG
87
n
94
ARG
87
A
PRO
88
n
95
PRO
88
A
HIS
89
n
96
HIS
89
A
ILE
90
n
97
ILE
90
A
PRO
91
n
98
PRO
91
A
THR
92
n
99
THR
92
A
GLN
93
n
100
GLN
93
A
ILE
94
n
101
ILE
94
A
THR
95
n
102
THR
95
A
GLU
96
n
103
GLU
96
A
THR
97
n
104
THR
97
A
ASN
98
n
105
ASN
98
A
ASP
99
n
106
ASP
99
A
GLY
100
n
107
GLY
100
A
VAL
101
n
108
VAL
101
A
LEU
102
n
109
LEU
102
A
ILE
103
n
110
ILE
103
A
VAL
104
n
111
VAL
104
A
ASN
105
n
112
ASN
105
A
THR
106
n
113
THR
106
A
SER
107
n
114
SER
107
A
LYS
108
n
115
LYS
108
A
TYR
109
n
116
TYR
109
A
PRO
110
n
117
PRO
110
A
ASN
111
n
118
ASN
111
A
MET
112
n
119
MET
112
A
TYR
113
n
120
TYR
113
A
VAL
114
n
121
VAL
114
A
PRO
115
n
122
PRO
115
A
VAL
116
n
123
VAL
116
A
GLY
117
n
124
GLY
117
A
ALA
118
n
125
ALA
118
A
VAL
119
n
126
VAL
119
A
THR
120
n
127
THR
120
A
GLU
121
n
128
GLU
121
A
GLN
122
n
129
GLN
122
A
GLY
123
n
130
GLY
123
A
TYR
124
n
131
TYR
124
A
LEU
125
n
132
LEU
125
A
ASN
126
n
133
ASN
126
A
LEU
127
n
134
LEU
127
A
GLY
128
n
135
GLY
128
A
GLY
129
n
136
GLY
129
A
ARG
130
n
137
ARG
130
A
GLN
131
n
138
GLN
131
A
THR
132
n
139
THR
132
A
ALA
133
n
140
ALA
133
A
ARG
134
n
141
ARG
134
A
THR
135
n
142
THR
135
A
LEU
136
n
143
LEU
136
A
MET
137
n
144
MET
137
A
TYR
138
n
145
TYR
138
A
ASN
139
n
146
ASN
139
A
PHE
140
n
147
PHE
140
A
PRO
141
n
148
PRO
141
A
THR
142
n
149
THR
142
A
ARG
143
n
150
ARG
143
A
ALA
144
n
151
ALA
144
A
GLY
145
n
152
GLY
145
A
GLN
146
n
153
GLN
146
A
CYS
147
n
154
CYS
147
A
GLY
148
n
155
GLY
148
A
GLY
149
n
156
GLY
149
A
VAL
150
n
157
VAL
150
A
ILE
151
n
158
ILE
151
A
THR
152
n
159
THR
152
A
CYS
153
n
160
CYS
153
A
THR
154
n
161
THR
154
A
GLY
155
n
162
GLY
155
A
LYS
156
n
163
LYS
156
A
VAL
157
n
164
VAL
157
A
ILE
158
n
165
ILE
158
A
GLY
159
n
166
GLY
159
A
MET
160
n
167
MET
160
A
HIS
161
n
168
HIS
161
A
VAL
162
n
169
VAL
162
A
GLY
163
n
170
GLY
163
A
GLY
164
n
171
GLY
164
A
ASN
165
n
172
ASN
165
A
GLY
166
n
173
GLY
166
A
SER
167
n
174
SER
167
A
HIS
168
n
175
HIS
168
A
GLY
169
n
176
GLY
169
A
PHE
170
n
177
PHE
170
A
ALA
171
n
178
ALA
171
A
ALA
172
n
179
ALA
172
A
ALA
173
n
180
ALA
173
A
LEU
174
n
181
LEU
174
A
LYS
175
n
182
LYS
175
A
ARG
176
n
183
ARG
176
A
SER
177
n
184
SER
177
A
TYR
178
n
185
TYR
178
A
PHE
179
n
186
PHE
179
A
THR
180
n
187
THR
180
A
n
188
181
A
n
189
182
A
n
190
183
A
1.3495
0.1984
0.2282
1.4959
0.4007
0.9644
0.0143
-0.0109
0.1057
-0.0008
0.0222
-0.2397
-0.0598
0.1501
-0.0434
0.1239
-0.0228
0.0020
0.1291
0.0065
0.1378
refined
13.8207
11.9621
13.5170
X-RAY DIFFRACTION
2.5102
-1.3648
0.8051
3.5113
0.4745
1.6887
-0.0783
0.5713
0.5097
-0.3404
0.0449
-0.4039
-0.1122
0.2957
-0.0082
0.2079
-0.0635
0.0469
0.2138
0.0503
0.1682
refined
13.9623
16.0406
3.2898
X-RAY DIFFRACTION
2.8572
-1.1560
-0.6854
5.3115
0.4943
1.1862
0.0109
-0.0139
0.1401
0.1208
-0.0564
0.0116
-0.1328
0.0120
0.0479
0.0983
-0.0064
-0.0300
0.0933
-0.0022
0.0318
refined
2.6901
10.3152
15.6921
X-RAY DIFFRACTION
2.4659
0.3879
-0.2565
4.4650
1.3104
5.3431
-0.0716
-0.1517
0.3389
0.2334
-0.0578
0.2596
-0.0404
-0.0455
0.0915
0.0920
-0.0084
-0.0226
0.1025
-0.0218
0.0959
refined
-1.4422
10.8230
20.3482
X-RAY DIFFRACTION
2.8033
-0.8606
0.3438
3.4094
-0.3006
2.6595
0.0354
-0.2389
0.2052
0.1805
-0.0311
-0.0932
-0.1097
0.0530
0.0013
0.1304
-0.0210
-0.0151
0.1417
-0.0160
0.1029
refined
5.4250
12.7732
27.1680
X-RAY DIFFRACTION
2.1173
-0.1263
0.9734
4.5967
-1.8216
3.9219
-0.0383
0.0075
0.1400
0.0501
-0.0333
-0.0755
-0.3116
-0.0474
0.0375
0.1275
0.0036
0.0005
0.1021
-0.0259
0.1148
refined
4.4632
15.9953
18.1982
X-RAY DIFFRACTION
A
-3
A
77
X-RAY DIFFRACTION
1
chain 'A' and (resseq -3:77)
A
78
A
89
X-RAY DIFFRACTION
2
chain 'A' and (resseq 78:89)
A
90
A
111
X-RAY DIFFRACTION
3
chain 'A' and (resseq 90:111)
A
112
A
123
X-RAY DIFFRACTION
4
chain 'A' and (resseq 112:123)
A
124
A
149
X-RAY DIFFRACTION
5
chain 'A' and (resseq 124:149)
A
150
A
180
X-RAY DIFFRACTION
6
chain 'A' and (resseq 150:180)
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
18
A
N
ALA
25
A
O
PHE
25
A
O
PHE
32
A
N
HIS
31
A
N
HIS
38
A
O
VAL
34
A
O
VAL
41
A
N
LEU
37
A
N
LEU
44
A
O
THR
73
A
O
THR
80
A
O
THR
76
A
O
THR
83
A
N
LEU
57
A
N
LEU
64
A
O
VAL
54
A
O
VAL
61
A
N
ILE
47
A
N
ILE
54
A
O
VAL
48
A
O
VAL
55
A
N
THR
19
A
N
THR
26
A
N
LEU
102
A
N
LEU
109
A
O
VAL
114
A
O
VAL
121
A
N
GLN
122
A
N
GLN
129
A
O
THR
135
A
O
THR
142
A
N
LEU
136
A
N
LEU
143
A
O
ALA
171
A
O
ALA
178
A
O
ALA
172
A
O
ALA
179
A
N
MET
160
A
N
MET
167
A
O
GLY
159
A
O
GLY
166
A
N
ILE
151
A
N
ILE
158
A
O
VAL
150
A
O
VAL
157
A
N
ILE
103
A
N
ILE
110
1
A
CG
ASP
50
A
CG
ASP
57
1
Y
1
A
OD1
ASP
50
A
OD1
ASP
57
1
Y
1
A
OD2
ASP
50
A
OD2
ASP
57
1
Y
1
A
CG
LYS
52
A
CG
LYS
59
1
Y
1
A
CD
LYS
52
A
CD
LYS
59
1
Y
1
A
CE
LYS
52
A
CE
LYS
59
1
Y
1
A
NZ
LYS
52
A
NZ
LYS
59
1
Y
1
A
CG
GLU
55
A
CG
GLU
62
1
Y
1
A
CD
GLU
55
A
CD
GLU
62
1
Y
1
A
OE1
GLU
55
A
OE1
GLU
62
1
Y
1
A
OE2
GLU
55
A
OE2
GLU
62
1
Y
1
A
CG
LYS
60
A
CG
LYS
67
1
Y
1
A
CD
LYS
60
A
CD
LYS
67
1
Y
1
A
CE
LYS
60
A
CE
LYS
67
1
Y
1
A
NZ
LYS
60
A
NZ
LYS
67
1
Y
1
A
CG
GLN
65
A
CG
GLN
72
1
Y
1
A
CD
GLN
65
A
CD
GLN
72
1
Y
1
A
OE1
GLN
65
A
OE1
GLN
72
1
Y
1
A
NE2
GLN
65
A
NE2
GLN
72
1
Y
1
A
CG
LYS
78
A
CG
LYS
85
1
Y
1
A
CD
LYS
78
A
CD
LYS
85
1
Y
1
A
CE
LYS
78
A
CE
LYS
85
1
Y
1
A
NZ
LYS
78
A
NZ
LYS
85
1
Y
1
A
MET
-6
A
MET
1
1
Y
1
A
HIS
-5
A
HIS
2
1
Y
1
A
HIS
-4
A
HIS
3
1
Y
1
A
GLN
181
A
GLN
188
1
Y
1
A
SER
182
A
SER
189
1
Y
1
A
GLN
183
A
GLN
190
1
Y
1
A
C21
K36
202
WRONG HAND
1
A
ASP
32
45.53
-122.34
58.710
22.6886
9.060
-3.8440
-0.0000
0.0000
-3.0155
0.0000
6.8595
0.1886
0.1658
0.1670
1.69
40.5200
2228
23726
5.1100
95.9700
1.000
0.500
0.2200
RANDOM
1
THROUGHOUT
1.200
MOLECULAR REPLACEMENT
18.9500
0.8600
1.1000
pdb entry 1L1N
ML
FLAT BULK SOLVENT MODEL
40.2990
0.4000
1.69
40.5200
130
1543
43
0
1370
0.009
1455
1.308
1977
0.109
228
0.006
255
17.402
519
0.3131
0.2820
1.6348
142
2592
2734
16
98.0000
0.2896
0.2709
1.6728
140
2636
2776
16
98.0000
0.2977
0.2705
1.7147
145
2544
2689
16
95.0000
0.2495
0.2350
1.7610
124
2656
2780
16
97.0000
0.2337
0.2041
1.8129
127
2572
2699
16
95.0000
0.2458
0.1918
1.8714
125
2672
2797
16
98.0000
0.2216
0.1807
1.9383
145
2626
2771
16
98.0000
0.2262
0.1582
2.0159
148
2638
2786
16
98.0000
0.1988
0.1509
2.1076
140
2558
2698
16
96.0000
0.1755
0.1509
2.2187
154
2520
2674
16
94.0000
0.1546
0.1429
2.3577
163
2514
2677
16
95.0000
0.1389
0.1426
2.5397
137
2648
2785
16
98.0000
0.1864
0.1557
2.7953
139
2590
2729
16
96.0000
0.1776
0.1617
3.1996
140
2432
2572
16
91.0000
0.1752
0.1508
4.0306
128
2564
2692
16
95.0000
0.1671
0.1573
40.5326
131
2582
2713
16
95.0000
1.69
53.995
4DCD
23731
23731
0
-3
0.049
1
3.600
99.500
1.60
1.69
2.3
3442
0.536
1
3.6
99.8
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2011/05/18
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.3.20
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Fri Sep 23 00:09:40 2011 (svn )
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.3.0
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
dev_892
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
JDirector
data reduction
XDS
1.6A resolution structure of PolioVirus 3C Protease Containing a covalently bound dipeptidyl inhibitor
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
A
GLY
1
A
GLY
8
HELX_P
A
ASN
14
A
ASN
21
1
1
14
A
HIS
40
A
HIS
47
HELX_P
A
SER
42
A
SER
49
5
2
3
A
ILE
86
A
ILE
93
HELX_P
A
ILE
90
A
ILE
97
5
3
5
A
LYS
175
A
LYS
182
HELX_P
A
THR
180
A
THR
187
5
4
6
covale
1.888
one
A
CYS
147
A
SG
CYS
154
1_555
A
K36
202
C
C21
K36
1_555
covale
1.524
none
A
DTT
201
B
C2
DTT
1_555
A
DTT
201
B
C2
DTT
4_555
HYDROLASE/HYDROLASE INHIBITOR
PROTEASE, POLIOVIRUS, ANTIVIRAL INHIBITORS, DIPEPTIDYL INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR complex
POLG_POL1M
UNP
1
1566
P03300
GPGFDYAVAMAKRNIVTATTSKGEFTMLGVHDNVAILPTHASPGESIVIDGKEVEILDAKALEDQAGTNLEITIITLKRN
EKFRDIRPHIPTQITETNDGVLIVNTSKYPNMYVPVGAVTEQGYLNLGGRQTARTLMYNFPTRAGQCGGVITCTGKVIGM
HVGGNGSHGFAAALKRSYFTQSQ
1566
1748
4DCD
1
183
P03300
A
1
8
190
1
initiating methionine
MET
-6
4DCD
A
P03300
UNP
1
1
expression tag
HIS
-5
4DCD
A
P03300
UNP
2
1
expression tag
HIS
-4
4DCD
A
P03300
UNP
3
1
expression tag
HIS
-3
4DCD
A
P03300
UNP
4
1
expression tag
HIS
-2
4DCD
A
P03300
UNP
5
1
expression tag
HIS
-1
4DCD
A
P03300
UNP
6
1
expression tag
HIS
0
4DCD
A
P03300
UNP
7
7
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
15
A
ILE
22
A
THR
20
A
THR
27
A
GLY
23
A
GLY
30
A
HIS
31
A
HIS
38
A
VAL
34
A
VAL
41
A
PRO
38
A
PRO
45
A
ASN
69
A
ASN
76
A
LEU
77
A
LEU
84
A
LYS
52
A
LYS
59
A
GLU
63
A
GLU
70
A
SER
46
A
SER
53
A
ILE
49
A
ILE
56
A
ILE
15
A
ILE
22
A
THR
20
A
THR
27
A
THR
97
A
THR
104
A
VAL
104
A
VAL
111
A
MET
112
A
MET
119
A
LEU
127
A
LEU
134
A
ARG
130
A
ARG
137
A
TYR
138
A
TYR
145
A
GLY
169
A
GLY
176
A
ALA
173
A
ALA
180
A
LYS
156
A
LYS
163
A
GLY
164
A
GLY
171
A
VAL
150
A
VAL
157
A
CYS
153
A
CYS
160
A
THR
97
A
THR
104
A
VAL
104
A
VAL
111
BINDING SITE FOR RESIDUE DTT A 201
A
DTT
201
Software
6
BINDING SITE FOR RESIDUE K36 A 202
A
K36
202
Software
15
BINDING SITE FOR RESIDUE SO4 A 203
A
SO4
203
Software
6
BINDING SITE FOR RESIDUE SO4 A 204
A
SO4
204
Software
5
A
HIS
-1
A
HIS
6
6
1_555
A
HIS
-2
A
HIS
5
6
1_555
A
HIS
-2
A
HIS
5
6
4_555
A
HIS
0
A
HIS
7
6
1_555
A
LYS
12
A
LYS
19
6
2_555
A
LYS
12
A
LYS
19
6
3_555
A
HIS
40
A
HIS
47
15
1_555
A
ASN
126
A
ASN
133
15
1_555
A
LEU
127
A
LEU
134
15
1_555
A
GLY
128
A
GLY
135
15
1_555
A
THR
142
A
THR
149
15
1_555
A
ARG
143
A
ARG
150
15
1_555
A
ALA
144
A
ALA
151
15
1_555
A
CYS
147
A
CYS
154
15
1_555
A
HIS
161
A
HIS
168
15
1_555
A
VAL
162
A
VAL
169
15
1_555
A
GLY
163
A
GLY
170
15
1_555
A
GLY
164
A
GLY
171
15
1_555
A
HOH
324
F
HOH
15
1_555
A
HOH
340
F
HOH
15
1_555
A
HOH
365
F
HOH
15
1_555
A
HIS
-3
A
HIS
4
6
1_555
A
HIS
-2
A
HIS
5
6
1_555
A
GLY
1
A
GLY
8
6
1_555
A
PRO
2
A
PRO
9
6
1_555
A
ARG
13
A
ARG
20
6
3_555
A
HOH
377
F
HOH
6
1_555
A
ARG
79
A
ARG
86
5
1_555
A
ASN
80
A
ASN
87
5
1_555
A
GLU
81
A
GLU
88
5
1_555
A
HOH
376
F
HOH
5
1_555
A
HOH
417
F
HOH
5
1_555
23
I 2 2 2