0.017831 0.000000 0.000000 0.000000 0.017063 0.000000 0.000000 0.000000 0.009260 0.000000 0.000000 0.000000 Lovell, S. Battaile, K.P. Kim, Y. Tiew, K.-C. Mandadapu, S.R. Alliston, K.R. Groutas, W.C. Chang, K.O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 56.083 58.607 107.991 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C4 H10 O2 S2 154.251 2,3-DIHYDROXY-1,4-DITHIOBUTANE 1,4-DITHIOTHREITOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C21 H31 N3 O8 S 485.551 (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid GC376 peptide-like C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N S N 89 N C N 90 R C N 91 N O N 92 R C N 93 N O N 94 N C N 95 N S N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N N N 107 S C N 108 N C N 109 N O N 110 N C N 111 N C N 112 N C N 113 N O N 114 N N N 115 N O N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N N N 127 S C N 128 N C N 129 N O N 130 N C N 131 N C N 132 N C N 133 N O N 134 N O N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N N N 146 N C N 147 N C N 148 N O N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N N N 156 S C N 157 N C N 158 N O N 159 N C Y 160 N C Y 161 N N Y 162 N C Y 163 N C Y 164 N N N 165 N O N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N O N 177 N H N 178 N H N 179 N N N 180 S C N 181 N C N 182 N O N 183 S C N 184 N C N 185 N C N 186 N C N 187 N O N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N C N 202 N O N 203 N C N 204 N O Y 205 N C Y 206 N C Y 207 N C Y 208 N C Y 209 N C Y 210 N C N 211 N N N 212 S C N 213 N C N 214 N O N 215 N C N 216 N C N 217 N C N 218 N C N 219 N N N 220 S C N 221 S C N 222 N O N 223 N C N 224 S C N 225 N C N 226 N C N 227 N N N 228 N C N 229 N O N 230 N S N 231 N O N 232 N O N 233 N O N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N N N 266 S C N 267 N C N 268 N O N 269 N C N 270 N C N 271 N C N 272 N C N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N C N 293 N C N 294 N C N 295 N N N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N C N 318 N S N 319 N C N 320 N O N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N N N 333 S C N 334 N C N 335 N O N 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N C Y 341 N C Y 342 N C N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 N C N 360 N C N 361 N C N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N O N 378 N O N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N S N 387 N O N 388 N O N 389 N O N 390 N O N 391 N N N 392 S C N 393 N C N 394 N O N 395 R C N 396 N O N 397 N C N 398 N O N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N N N 409 S C N 410 N C N 411 N O N 412 N C Y 413 N C Y 414 N C Y 415 N C Y 416 N C Y 417 N C Y 418 N C N 419 N O N 420 N O N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N N N 433 S C N 434 N C N 435 N O N 436 N C N 437 N C N 438 N C N 439 N O N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing Y 157 N sing Y 158 N doub Y 159 N doub N 160 N sing Y 161 N sing N 162 N sing Y 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing Y 239 N sing Y 240 N doub Y 241 N sing Y 242 N doub Y 243 N sing Y 244 N doub N 245 N sing N 246 N doub N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing Y 330 N doub Y 331 N sing Y 332 N sing N 333 N sing Y 334 N doub N 335 N sing Y 336 N doub N 337 N sing Y 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N doub N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N doub N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing Y 403 N doub Y 404 N sing Y 405 N sing N 406 N sing Y 407 N doub N 408 N sing Y 409 N doub N 410 N sing Y 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N doub N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing US J.Virol. JOVIAM 0825 0022-538X 86 11754 11762 10.1128/JVI.01348-12 22915796 Broad-Spectrum Antivirals against 3C or 3C-Like Proteases of Picornaviruses, Noroviruses, and Coronaviruses. 2012 10.2210/pdb4dcd/pdb pdb_00004dcd 100 1 PIXEL 2011-10-16 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 17-ID APS 1.0000 SYNCHROTRON APS BEAMLINE 17-ID 20607.389 Genome polyprotein 3.4.22.28 unp residues 1566-1748 1 man polymer 154.251 2,3-DIHYDROXY-1,4-DITHIOBUTANE 1 syn non-polymer 485.551 (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid 1 syn non-polymer 96.063 SULFATE ION 2 syn non-polymer 18.015 water 130 nat water Protease 3C no no MHHHHHHGPGFDYAVAMAKRNIVTATTSKGEFTMLGVHDNVAILPTHASPGESIVIDGKEVEILDAKALEDQAGTNLEIT IITLKRNEKFRDIRPHIPTQITETNDGVLIVNTSKYPNMYVPVGAVTEQGYLNLGGRQTARTLMYNFPTRAGQCGGVITC TGKVIGMHVGGNGSHGFAAALKRSYFTQSQ MHHHHHHGPGFDYAVAMAKRNIVTATTSKGEFTMLGVHDNVAILPTHASPGESIVIDGKEVEILDAKALEDQAGTNLEIT IITLKRNEKFRDIRPHIPTQITETNDGVLIVNTSKYPNMYVPVGAVTEQGYLNLGGRQTARTLMYNFPTRAGQCGGVITC TGKVIGMHVGGNGSHGFAAALKRSYFTQSQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Mahoney sample 12081 Human poliovirus 1 511693 Escherichia coli BL21 plasmid pET28 1 2.15 42.87 VAPOR DIFFUSION, SITTING DROP 6.5 30% (w/v) PEG 5000 MME, 100 mM MES, 200 mM ammonium sulfate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 pdbx_unobs_or_zero_occ_atoms software chem_comp struct_conn struct_ref_seq_dif chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Database references Advisory Refinement description Database references Derived calculations Structure summary Data collection Database references Derived calculations Refinement description 1 0 2012-09-05 1 1 2012-11-14 1 2 2017-11-15 1 3 2020-05-20 1 4 2023-09-13 _software.name _chem_comp.pdbx_synonyms _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-01-17 REL REL DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE K36 (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid SO4 SULFATE ION HOH water WHEN THE K36 LIGAND IS MIXED WITH THE POLIOVIRUS PROTEASE, IT FORMS A COVALENT COMPLEX WITH A LINKAGE BETWEEN C21 OF THE LIGAND AND THE SULFUR ATOM (SG) OF CYS147. THE BISULFITE FUNCTIONAL GROUP IS REMOVED DURING THIS REACTION. 1L1N pdb entry 1L1N PDB experimental model DTT 1 2 DTT DTT 201 A K36 1 3 K36 K36 202 A SO4 1 4 SO4 SO4 203 A SO4 2 4 SO4 SO4 204 A HOH 1 5 HOH HOH 301 A HOH 2 5 HOH HOH 302 A HOH 3 5 HOH HOH 303 A HOH 4 5 HOH HOH 304 A HOH 5 5 HOH HOH 305 A HOH 6 5 HOH HOH 306 A HOH 7 5 HOH HOH 307 A HOH 8 5 HOH HOH 308 A HOH 9 5 HOH HOH 309 A HOH 10 5 HOH HOH 310 A HOH 11 5 HOH HOH 311 A HOH 12 5 HOH HOH 312 A HOH 13 5 HOH HOH 313 A HOH 14 5 HOH HOH 314 A HOH 15 5 HOH HOH 315 A HOH 16 5 HOH HOH 316 A HOH 17 5 HOH HOH 317 A HOH 18 5 HOH HOH 318 A HOH 19 5 HOH HOH 319 A HOH 20 5 HOH HOH 320 A HOH 21 5 HOH HOH 321 A HOH 22 5 HOH HOH 322 A HOH 23 5 HOH HOH 323 A HOH 24 5 HOH HOH 324 A HOH 25 5 HOH HOH 325 A HOH 26 5 HOH HOH 326 A HOH 27 5 HOH HOH 327 A HOH 28 5 HOH HOH 328 A HOH 29 5 HOH HOH 329 A HOH 30 5 HOH HOH 330 A HOH 31 5 HOH HOH 331 A HOH 32 5 HOH HOH 332 A HOH 33 5 HOH HOH 333 A HOH 34 5 HOH HOH 334 A HOH 35 5 HOH HOH 335 A HOH 36 5 HOH HOH 336 A HOH 37 5 HOH HOH 337 A HOH 38 5 HOH HOH 338 A HOH 39 5 HOH HOH 339 A HOH 40 5 HOH HOH 340 A HOH 41 5 HOH HOH 341 A HOH 42 5 HOH HOH 342 A HOH 43 5 HOH HOH 343 A HOH 44 5 HOH HOH 344 A HOH 45 5 HOH HOH 345 A HOH 46 5 HOH HOH 346 A HOH 47 5 HOH HOH 347 A HOH 48 5 HOH HOH 348 A HOH 49 5 HOH HOH 349 A HOH 50 5 HOH HOH 350 A HOH 51 5 HOH HOH 351 A HOH 52 5 HOH HOH 352 A HOH 53 5 HOH HOH 353 A HOH 54 5 HOH HOH 354 A HOH 55 5 HOH HOH 355 A HOH 56 5 HOH HOH 356 A HOH 57 5 HOH HOH 357 A HOH 58 5 HOH HOH 358 A HOH 59 5 HOH HOH 359 A HOH 60 5 HOH HOH 360 A HOH 61 5 HOH HOH 361 A HOH 62 5 HOH HOH 362 A HOH 63 5 HOH HOH 363 A HOH 64 5 HOH HOH 364 A HOH 65 5 HOH HOH 365 A HOH 66 5 HOH HOH 366 A HOH 67 5 HOH HOH 367 A HOH 68 5 HOH HOH 368 A HOH 69 5 HOH HOH 369 A HOH 70 5 HOH HOH 370 A HOH 71 5 HOH HOH 371 A HOH 72 5 HOH HOH 372 A HOH 73 5 HOH HOH 373 A HOH 74 5 HOH HOH 374 A HOH 75 5 HOH HOH 375 A HOH 76 5 HOH HOH 376 A HOH 77 5 HOH HOH 377 A HOH 78 5 HOH HOH 378 A HOH 79 5 HOH HOH 379 A HOH 80 5 HOH HOH 380 A HOH 81 5 HOH HOH 381 A HOH 82 5 HOH HOH 382 A HOH 83 5 HOH HOH 383 A HOH 84 5 HOH HOH 384 A HOH 85 5 HOH HOH 385 A HOH 86 5 HOH HOH 386 A HOH 87 5 HOH HOH 387 A HOH 88 5 HOH HOH 388 A HOH 89 5 HOH HOH 389 A HOH 90 5 HOH HOH 390 A HOH 91 5 HOH HOH 391 A HOH 92 5 HOH HOH 392 A HOH 93 5 HOH HOH 393 A HOH 94 5 HOH HOH 394 A HOH 95 5 HOH HOH 395 A HOH 96 5 HOH HOH 396 A HOH 97 5 HOH HOH 397 A HOH 98 5 HOH HOH 398 A HOH 99 5 HOH HOH 399 A HOH 100 5 HOH HOH 400 A HOH 101 5 HOH HOH 401 A HOH 102 5 HOH HOH 402 A HOH 103 5 HOH HOH 403 A HOH 104 5 HOH HOH 404 A HOH 105 5 HOH HOH 405 A HOH 106 5 HOH HOH 406 A HOH 107 5 HOH HOH 407 A HOH 108 5 HOH HOH 408 A HOH 109 5 HOH HOH 409 A HOH 110 5 HOH HOH 410 A HOH 111 5 HOH HOH 411 A HOH 112 5 HOH HOH 412 A HOH 113 5 HOH HOH 413 A HOH 114 5 HOH HOH 414 A HOH 115 5 HOH HOH 415 A HOH 116 5 HOH HOH 416 A HOH 117 5 HOH HOH 417 A HOH 118 5 HOH HOH 418 A HOH 119 5 HOH HOH 419 A HOH 120 5 HOH HOH 420 A HOH 121 5 HOH HOH 421 A HOH 122 5 HOH HOH 422 A HOH 123 5 HOH HOH 423 A HOH 124 5 HOH HOH 424 A HOH 125 5 HOH HOH 425 A HOH 126 5 HOH HOH 426 A HOH 127 5 HOH HOH 427 A HOH 128 5 HOH HOH 428 A HOH 129 5 HOH HOH 429 A HOH 130 5 HOH HOH 430 A 2.500 2.500 51.510 51.510 n 1 -6 A n 2 -5 A n 3 -4 A HIS -3 n 4 HIS -3 A HIS -2 n 5 HIS -2 A HIS -1 n 6 HIS -1 A HIS 0 n 7 HIS 0 A GLY 1 n 8 GLY 1 A PRO 2 n 9 PRO 2 A GLY 3 n 10 GLY 3 A PHE 4 n 11 PHE 4 A ASP 5 n 12 ASP 5 A TYR 6 n 13 TYR 6 A ALA 7 n 14 ALA 7 A VAL 8 n 15 VAL 8 A ALA 9 n 16 ALA 9 A MET 10 n 17 MET 10 A ALA 11 n 18 ALA 11 A LYS 12 n 19 LYS 12 A ARG 13 n 20 ARG 13 A ASN 14 n 21 ASN 14 A ILE 15 n 22 ILE 15 A VAL 16 n 23 VAL 16 A THR 17 n 24 THR 17 A ALA 18 n 25 ALA 18 A THR 19 n 26 THR 19 A THR 20 n 27 THR 20 A SER 21 n 28 SER 21 A LYS 22 n 29 LYS 22 A GLY 23 n 30 GLY 23 A GLU 24 n 31 GLU 24 A PHE 25 n 32 PHE 25 A THR 26 n 33 THR 26 A MET 27 n 34 MET 27 A LEU 28 n 35 LEU 28 A GLY 29 n 36 GLY 29 A VAL 30 n 37 VAL 30 A HIS 31 n 38 HIS 31 A ASP 32 n 39 ASP 32 A ASN 33 n 40 ASN 33 A VAL 34 n 41 VAL 34 A ALA 35 n 42 ALA 35 A ILE 36 n 43 ILE 36 A LEU 37 n 44 LEU 37 A PRO 38 n 45 PRO 38 A THR 39 n 46 THR 39 A HIS 40 n 47 HIS 40 A ALA 41 n 48 ALA 41 A SER 42 n 49 SER 42 A PRO 43 n 50 PRO 43 A GLY 44 n 51 GLY 44 A GLU 45 n 52 GLU 45 A SER 46 n 53 SER 46 A ILE 47 n 54 ILE 47 A VAL 48 n 55 VAL 48 A ILE 49 n 56 ILE 49 A ASP 50 n 57 ASP 50 A GLY 51 n 58 GLY 51 A LYS 52 n 59 LYS 52 A GLU 53 n 60 GLU 53 A VAL 54 n 61 VAL 54 A GLU 55 n 62 GLU 55 A ILE 56 n 63 ILE 56 A LEU 57 n 64 LEU 57 A ASP 58 n 65 ASP 58 A ALA 59 n 66 ALA 59 A LYS 60 n 67 LYS 60 A ALA 61 n 68 ALA 61 A LEU 62 n 69 LEU 62 A GLU 63 n 70 GLU 63 A ASP 64 n 71 ASP 64 A GLN 65 n 72 GLN 65 A ALA 66 n 73 ALA 66 A GLY 67 n 74 GLY 67 A THR 68 n 75 THR 68 A ASN 69 n 76 ASN 69 A LEU 70 n 77 LEU 70 A GLU 71 n 78 GLU 71 A ILE 72 n 79 ILE 72 A THR 73 n 80 THR 73 A ILE 74 n 81 ILE 74 A ILE 75 n 82 ILE 75 A THR 76 n 83 THR 76 A LEU 77 n 84 LEU 77 A LYS 78 n 85 LYS 78 A ARG 79 n 86 ARG 79 A ASN 80 n 87 ASN 80 A GLU 81 n 88 GLU 81 A LYS 82 n 89 LYS 82 A PHE 83 n 90 PHE 83 A ARG 84 n 91 ARG 84 A ASP 85 n 92 ASP 85 A ILE 86 n 93 ILE 86 A ARG 87 n 94 ARG 87 A PRO 88 n 95 PRO 88 A HIS 89 n 96 HIS 89 A ILE 90 n 97 ILE 90 A PRO 91 n 98 PRO 91 A THR 92 n 99 THR 92 A GLN 93 n 100 GLN 93 A ILE 94 n 101 ILE 94 A THR 95 n 102 THR 95 A GLU 96 n 103 GLU 96 A THR 97 n 104 THR 97 A ASN 98 n 105 ASN 98 A ASP 99 n 106 ASP 99 A GLY 100 n 107 GLY 100 A VAL 101 n 108 VAL 101 A LEU 102 n 109 LEU 102 A ILE 103 n 110 ILE 103 A VAL 104 n 111 VAL 104 A ASN 105 n 112 ASN 105 A THR 106 n 113 THR 106 A SER 107 n 114 SER 107 A LYS 108 n 115 LYS 108 A TYR 109 n 116 TYR 109 A PRO 110 n 117 PRO 110 A ASN 111 n 118 ASN 111 A MET 112 n 119 MET 112 A TYR 113 n 120 TYR 113 A VAL 114 n 121 VAL 114 A PRO 115 n 122 PRO 115 A VAL 116 n 123 VAL 116 A GLY 117 n 124 GLY 117 A ALA 118 n 125 ALA 118 A VAL 119 n 126 VAL 119 A THR 120 n 127 THR 120 A GLU 121 n 128 GLU 121 A GLN 122 n 129 GLN 122 A GLY 123 n 130 GLY 123 A TYR 124 n 131 TYR 124 A LEU 125 n 132 LEU 125 A ASN 126 n 133 ASN 126 A LEU 127 n 134 LEU 127 A GLY 128 n 135 GLY 128 A GLY 129 n 136 GLY 129 A ARG 130 n 137 ARG 130 A GLN 131 n 138 GLN 131 A THR 132 n 139 THR 132 A ALA 133 n 140 ALA 133 A ARG 134 n 141 ARG 134 A THR 135 n 142 THR 135 A LEU 136 n 143 LEU 136 A MET 137 n 144 MET 137 A TYR 138 n 145 TYR 138 A ASN 139 n 146 ASN 139 A PHE 140 n 147 PHE 140 A PRO 141 n 148 PRO 141 A THR 142 n 149 THR 142 A ARG 143 n 150 ARG 143 A ALA 144 n 151 ALA 144 A GLY 145 n 152 GLY 145 A GLN 146 n 153 GLN 146 A CYS 147 n 154 CYS 147 A GLY 148 n 155 GLY 148 A GLY 149 n 156 GLY 149 A VAL 150 n 157 VAL 150 A ILE 151 n 158 ILE 151 A THR 152 n 159 THR 152 A CYS 153 n 160 CYS 153 A THR 154 n 161 THR 154 A GLY 155 n 162 GLY 155 A LYS 156 n 163 LYS 156 A VAL 157 n 164 VAL 157 A ILE 158 n 165 ILE 158 A GLY 159 n 166 GLY 159 A MET 160 n 167 MET 160 A HIS 161 n 168 HIS 161 A VAL 162 n 169 VAL 162 A GLY 163 n 170 GLY 163 A GLY 164 n 171 GLY 164 A ASN 165 n 172 ASN 165 A GLY 166 n 173 GLY 166 A SER 167 n 174 SER 167 A HIS 168 n 175 HIS 168 A GLY 169 n 176 GLY 169 A PHE 170 n 177 PHE 170 A ALA 171 n 178 ALA 171 A ALA 172 n 179 ALA 172 A ALA 173 n 180 ALA 173 A LEU 174 n 181 LEU 174 A LYS 175 n 182 LYS 175 A ARG 176 n 183 ARG 176 A SER 177 n 184 SER 177 A TYR 178 n 185 TYR 178 A PHE 179 n 186 PHE 179 A THR 180 n 187 THR 180 A n 188 181 A n 189 182 A n 190 183 A 1.3495 0.1984 0.2282 1.4959 0.4007 0.9644 0.0143 -0.0109 0.1057 -0.0008 0.0222 -0.2397 -0.0598 0.1501 -0.0434 0.1239 -0.0228 0.0020 0.1291 0.0065 0.1378 refined 13.8207 11.9621 13.5170 X-RAY DIFFRACTION 2.5102 -1.3648 0.8051 3.5113 0.4745 1.6887 -0.0783 0.5713 0.5097 -0.3404 0.0449 -0.4039 -0.1122 0.2957 -0.0082 0.2079 -0.0635 0.0469 0.2138 0.0503 0.1682 refined 13.9623 16.0406 3.2898 X-RAY DIFFRACTION 2.8572 -1.1560 -0.6854 5.3115 0.4943 1.1862 0.0109 -0.0139 0.1401 0.1208 -0.0564 0.0116 -0.1328 0.0120 0.0479 0.0983 -0.0064 -0.0300 0.0933 -0.0022 0.0318 refined 2.6901 10.3152 15.6921 X-RAY DIFFRACTION 2.4659 0.3879 -0.2565 4.4650 1.3104 5.3431 -0.0716 -0.1517 0.3389 0.2334 -0.0578 0.2596 -0.0404 -0.0455 0.0915 0.0920 -0.0084 -0.0226 0.1025 -0.0218 0.0959 refined -1.4422 10.8230 20.3482 X-RAY DIFFRACTION 2.8033 -0.8606 0.3438 3.4094 -0.3006 2.6595 0.0354 -0.2389 0.2052 0.1805 -0.0311 -0.0932 -0.1097 0.0530 0.0013 0.1304 -0.0210 -0.0151 0.1417 -0.0160 0.1029 refined 5.4250 12.7732 27.1680 X-RAY DIFFRACTION 2.1173 -0.1263 0.9734 4.5967 -1.8216 3.9219 -0.0383 0.0075 0.1400 0.0501 -0.0333 -0.0755 -0.3116 -0.0474 0.0375 0.1275 0.0036 0.0005 0.1021 -0.0259 0.1148 refined 4.4632 15.9953 18.1982 X-RAY DIFFRACTION A -3 A 77 X-RAY DIFFRACTION 1 chain 'A' and (resseq -3:77) A 78 A 89 X-RAY DIFFRACTION 2 chain 'A' and (resseq 78:89) A 90 A 111 X-RAY DIFFRACTION 3 chain 'A' and (resseq 90:111) A 112 A 123 X-RAY DIFFRACTION 4 chain 'A' and (resseq 112:123) A 124 A 149 X-RAY DIFFRACTION 5 chain 'A' and (resseq 124:149) A 150 A 180 X-RAY DIFFRACTION 6 chain 'A' and (resseq 150:180) author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ALA 18 A N ALA 25 A O PHE 25 A O PHE 32 A N HIS 31 A N HIS 38 A O VAL 34 A O VAL 41 A N LEU 37 A N LEU 44 A O THR 73 A O THR 80 A O THR 76 A O THR 83 A N LEU 57 A N LEU 64 A O VAL 54 A O VAL 61 A N ILE 47 A N ILE 54 A O VAL 48 A O VAL 55 A N THR 19 A N THR 26 A N LEU 102 A N LEU 109 A O VAL 114 A O VAL 121 A N GLN 122 A N GLN 129 A O THR 135 A O THR 142 A N LEU 136 A N LEU 143 A O ALA 171 A O ALA 178 A O ALA 172 A O ALA 179 A N MET 160 A N MET 167 A O GLY 159 A O GLY 166 A N ILE 151 A N ILE 158 A O VAL 150 A O VAL 157 A N ILE 103 A N ILE 110 1 A CG ASP 50 A CG ASP 57 1 Y 1 A OD1 ASP 50 A OD1 ASP 57 1 Y 1 A OD2 ASP 50 A OD2 ASP 57 1 Y 1 A CG LYS 52 A CG LYS 59 1 Y 1 A CD LYS 52 A CD LYS 59 1 Y 1 A CE LYS 52 A CE LYS 59 1 Y 1 A NZ LYS 52 A NZ LYS 59 1 Y 1 A CG GLU 55 A CG GLU 62 1 Y 1 A CD GLU 55 A CD GLU 62 1 Y 1 A OE1 GLU 55 A OE1 GLU 62 1 Y 1 A OE2 GLU 55 A OE2 GLU 62 1 Y 1 A CG LYS 60 A CG LYS 67 1 Y 1 A CD LYS 60 A CD LYS 67 1 Y 1 A CE LYS 60 A CE LYS 67 1 Y 1 A NZ LYS 60 A NZ LYS 67 1 Y 1 A CG GLN 65 A CG GLN 72 1 Y 1 A CD GLN 65 A CD GLN 72 1 Y 1 A OE1 GLN 65 A OE1 GLN 72 1 Y 1 A NE2 GLN 65 A NE2 GLN 72 1 Y 1 A CG LYS 78 A CG LYS 85 1 Y 1 A CD LYS 78 A CD LYS 85 1 Y 1 A CE LYS 78 A CE LYS 85 1 Y 1 A NZ LYS 78 A NZ LYS 85 1 Y 1 A MET -6 A MET 1 1 Y 1 A HIS -5 A HIS 2 1 Y 1 A HIS -4 A HIS 3 1 Y 1 A GLN 181 A GLN 188 1 Y 1 A SER 182 A SER 189 1 Y 1 A GLN 183 A GLN 190 1 Y 1 A C21 K36 202 WRONG HAND 1 A ASP 32 45.53 -122.34 58.710 22.6886 9.060 -3.8440 -0.0000 0.0000 -3.0155 0.0000 6.8595 0.1886 0.1658 0.1670 1.69 40.5200 2228 23726 5.1100 95.9700 1.000 0.500 0.2200 RANDOM 1 THROUGHOUT 1.200 MOLECULAR REPLACEMENT 18.9500 0.8600 1.1000 pdb entry 1L1N ML FLAT BULK SOLVENT MODEL 40.2990 0.4000 1.69 40.5200 130 1543 43 0 1370 0.009 1455 1.308 1977 0.109 228 0.006 255 17.402 519 0.3131 0.2820 1.6348 142 2592 2734 16 98.0000 0.2896 0.2709 1.6728 140 2636 2776 16 98.0000 0.2977 0.2705 1.7147 145 2544 2689 16 95.0000 0.2495 0.2350 1.7610 124 2656 2780 16 97.0000 0.2337 0.2041 1.8129 127 2572 2699 16 95.0000 0.2458 0.1918 1.8714 125 2672 2797 16 98.0000 0.2216 0.1807 1.9383 145 2626 2771 16 98.0000 0.2262 0.1582 2.0159 148 2638 2786 16 98.0000 0.1988 0.1509 2.1076 140 2558 2698 16 96.0000 0.1755 0.1509 2.2187 154 2520 2674 16 94.0000 0.1546 0.1429 2.3577 163 2514 2677 16 95.0000 0.1389 0.1426 2.5397 137 2648 2785 16 98.0000 0.1864 0.1557 2.7953 139 2590 2729 16 96.0000 0.1776 0.1617 3.1996 140 2432 2572 16 91.0000 0.1752 0.1508 4.0306 128 2564 2692 16 95.0000 0.1671 0.1573 40.5326 131 2582 2713 16 95.0000 1.69 53.995 4DCD 23731 23731 0 -3 0.049 1 3.600 99.500 1.60 1.69 2.3 3442 0.536 1 3.6 99.8 data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk 2011/05/18 Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other 3.3.20 phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Fri Sep 23 00:09:40 2011 (svn ) http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.3.0 refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package dev_892 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data collection JDirector data reduction XDS 1.6A resolution structure of PolioVirus 3C Protease Containing a covalently bound dipeptidyl inhibitor 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N A GLY 1 A GLY 8 HELX_P A ASN 14 A ASN 21 1 1 14 A HIS 40 A HIS 47 HELX_P A SER 42 A SER 49 5 2 3 A ILE 86 A ILE 93 HELX_P A ILE 90 A ILE 97 5 3 5 A LYS 175 A LYS 182 HELX_P A THR 180 A THR 187 5 4 6 covale 1.888 one A CYS 147 A SG CYS 154 1_555 A K36 202 C C21 K36 1_555 covale 1.524 none A DTT 201 B C2 DTT 1_555 A DTT 201 B C2 DTT 4_555 HYDROLASE/HYDROLASE INHIBITOR PROTEASE, POLIOVIRUS, ANTIVIRAL INHIBITORS, DIPEPTIDYL INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR complex POLG_POL1M UNP 1 1566 P03300 GPGFDYAVAMAKRNIVTATTSKGEFTMLGVHDNVAILPTHASPGESIVIDGKEVEILDAKALEDQAGTNLEITIITLKRN EKFRDIRPHIPTQITETNDGVLIVNTSKYPNMYVPVGAVTEQGYLNLGGRQTARTLMYNFPTRAGQCGGVITCTGKVIGM HVGGNGSHGFAAALKRSYFTQSQ 1566 1748 4DCD 1 183 P03300 A 1 8 190 1 initiating methionine MET -6 4DCD A P03300 UNP 1 1 expression tag HIS -5 4DCD A P03300 UNP 2 1 expression tag HIS -4 4DCD A P03300 UNP 3 1 expression tag HIS -3 4DCD A P03300 UNP 4 1 expression tag HIS -2 4DCD A P03300 UNP 5 1 expression tag HIS -1 4DCD A P03300 UNP 6 1 expression tag HIS 0 4DCD A P03300 UNP 7 7 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 15 A ILE 22 A THR 20 A THR 27 A GLY 23 A GLY 30 A HIS 31 A HIS 38 A VAL 34 A VAL 41 A PRO 38 A PRO 45 A ASN 69 A ASN 76 A LEU 77 A LEU 84 A LYS 52 A LYS 59 A GLU 63 A GLU 70 A SER 46 A SER 53 A ILE 49 A ILE 56 A ILE 15 A ILE 22 A THR 20 A THR 27 A THR 97 A THR 104 A VAL 104 A VAL 111 A MET 112 A MET 119 A LEU 127 A LEU 134 A ARG 130 A ARG 137 A TYR 138 A TYR 145 A GLY 169 A GLY 176 A ALA 173 A ALA 180 A LYS 156 A LYS 163 A GLY 164 A GLY 171 A VAL 150 A VAL 157 A CYS 153 A CYS 160 A THR 97 A THR 104 A VAL 104 A VAL 111 BINDING SITE FOR RESIDUE DTT A 201 A DTT 201 Software 6 BINDING SITE FOR RESIDUE K36 A 202 A K36 202 Software 15 BINDING SITE FOR RESIDUE SO4 A 203 A SO4 203 Software 6 BINDING SITE FOR RESIDUE SO4 A 204 A SO4 204 Software 5 A HIS -1 A HIS 6 6 1_555 A HIS -2 A HIS 5 6 1_555 A HIS -2 A HIS 5 6 4_555 A HIS 0 A HIS 7 6 1_555 A LYS 12 A LYS 19 6 2_555 A LYS 12 A LYS 19 6 3_555 A HIS 40 A HIS 47 15 1_555 A ASN 126 A ASN 133 15 1_555 A LEU 127 A LEU 134 15 1_555 A GLY 128 A GLY 135 15 1_555 A THR 142 A THR 149 15 1_555 A ARG 143 A ARG 150 15 1_555 A ALA 144 A ALA 151 15 1_555 A CYS 147 A CYS 154 15 1_555 A HIS 161 A HIS 168 15 1_555 A VAL 162 A VAL 169 15 1_555 A GLY 163 A GLY 170 15 1_555 A GLY 164 A GLY 171 15 1_555 A HOH 324 F HOH 15 1_555 A HOH 340 F HOH 15 1_555 A HOH 365 F HOH 15 1_555 A HIS -3 A HIS 4 6 1_555 A HIS -2 A HIS 5 6 1_555 A GLY 1 A GLY 8 6 1_555 A PRO 2 A PRO 9 6 1_555 A ARG 13 A ARG 20 6 3_555 A HOH 377 F HOH 6 1_555 A ARG 79 A ARG 86 5 1_555 A ASN 80 A ASN 87 5 1_555 A GLU 81 A GLU 88 5 1_555 A HOH 376 F HOH 5 1_555 A HOH 417 F HOH 5 1_555 23 I 2 2 2