0.011725 0.006770 0.000000 0.000000 0.013539 0.000000 0.000000 0.000000 0.012965 0.000000 0.000000 0.000000 Yuthavong, Y. Tarnchompoo, B. Vilaivan, T. Chitnumsub, P. Kamchonwongpaisan, S. Charman, S.A. McLennan, D.N. White, K.L. Vivas, L. Bongard, E. Thongphanchang, C. Taweechai, S. Vanichtanankul, J. Rattanajak, R. Arwon, U. Fantauzzi, P. Yuvaniyama, J. Charman, W.N. Matthews, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 9 90.000 90.000 120.000 85.285 85.285 77.131 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C18 H24 N4 O4 360.408 3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid non-polymer C21 H30 N7 O17 P3 745.421 NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H Y 250 N C Y 251 N N Y 252 N C Y 253 N N Y 254 N C Y 255 N C N 256 N N N 257 N N N 258 N C N 259 N C N 260 N O N 261 N C N 262 N C N 263 N C N 264 N O Y 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C N 271 N C N 272 N C N 273 N C N 274 N O N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 S P N 301 N O N 302 N O N 303 N O N 304 N C N 305 R C N 306 N O N 307 R C N 308 N O N 309 R C N 310 N O N 311 R C Y 312 N N Y 313 N C Y 314 N N Y 315 N C Y 316 N C N 317 N N Y 318 N N Y 319 N C Y 320 N N Y 321 N C N 322 N O N 323 S P N 324 N O N 325 N O N 326 N O N 327 N C N 328 R C N 329 N O N 330 S C N 331 N O N 332 R C N 333 N O N 334 R C N 335 N N N 336 N C N 337 N C N 338 N C N 339 N O N 340 N N N 341 N C N 342 N C N 343 N C N 344 N P N 345 N O N 346 N O N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N N N 379 S C N 380 N C N 381 N O N 382 N C Y 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N N N 402 S C N 403 N C N 404 N O N 405 N C N 406 N C N 407 N C N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N N N 419 S C N 420 N C N 421 N O N 422 N C N 423 N O N 424 N O N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N N N 433 S C N 434 N C N 435 N O N 436 R C N 437 N O N 438 N C N 439 N O N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N N N 450 S C N 451 N C N 452 N O N 453 N C Y 454 N C Y 455 N C Y 456 N C Y 457 N N Y 458 N C Y 459 N C Y 460 N C Y 461 N C Y 462 N C N 463 N O N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N N N 477 S C N 478 N C N 479 N O N 480 N C Y 481 N C Y 482 N C Y 483 N C Y 484 N C Y 485 N C Y 486 N C N 487 N O N 488 N O N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N N N 501 S C N 502 N C N 503 N O N 504 N C N 505 N C N 506 N C N 507 N O N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing Y 238 N doub Y 239 N sing Y 240 N sing Y 241 N doub N 242 N sing N 243 N sing Y 244 N doub N 245 N doub N 246 N sing Y 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing Y 255 N doub Y 256 N sing Y 257 N sing N 258 N sing N 259 N sing N 260 N sing Y 261 N doub Y 262 N doub Y 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing Y 311 N sing Y 312 N sing Y 313 N doub N 314 N sing Y 315 N sing Y 316 N sing Y 317 N doub N 318 N sing Y 319 N doub N 320 N sing N 321 N sing Y 322 N sing Y 323 N doub N 324 N sing Y 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N doub N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N doub N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing Y 381 N doub Y 382 N sing Y 383 N sing N 384 N sing Y 385 N doub N 386 N sing Y 387 N doub N 388 N sing Y 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N doub N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N doub N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing Y 450 N doub Y 451 N sing Y 452 N sing N 453 N sing Y 454 N doub Y 455 N sing Y 456 N sing N 457 N sing Y 458 N sing Y 459 N doub N 460 N sing Y 461 N doub N 462 N sing Y 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N doub N 474 N sing N 475 N sing N 476 N sing N 477 N sing Y 478 N doub Y 479 N sing Y 480 N sing N 481 N sing Y 482 N doub N 483 N sing Y 484 N doub N 485 N sing Y 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N doub N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 109 16823 16828 10.1073/pnas.1204556109 23035243 Malarial dihydrofolate reductase as a paradigm for drug development against a resistance-compromised target 2012 10.2210/pdb4ddr/pdb pdb_00004ddr 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100 1 IMAGE PLATE 2008-10-01 RIGAKU RAXIS IV++ SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH3R 21349.525 Dihydrofolate reductase 1.5.1.3 1 man polymer 745.421 NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE 1 syn non-polymer 360.408 3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid 1 syn non-polymer 18.015 water 172 nat water no no VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELK EPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLP EYPGVLSDVQEEKGIKYKFEVYEKND VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELK EPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLP EYPGVLSDVQEEKGIKYKFEVYEKND A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample DHFR 9606 Homo sapiens 562 Escherichia coli BL21(DE3) plasmid pET17b 1 2.53 51.36 0.670 VAPOR DIFFUSION, HANGING DROP 2.78M Ammonium sulphate, 100mM K2HPO4, 3%(v/v) Ethanol, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_site repository Initial release Data collection Database references Derived calculations Refinement description 1 0 2012-11-14 1 1 2023-11-08 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2012-01-19 REL REL NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE MMV 3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid HOH water 1HFR PDB experimental model NDP 187 2 NDP NDP 201 A MMV 188 3 MMV MMV 202 A HOH 1001 4 HOH HOH 1001 A HOH 1002 4 HOH HOH 1002 A HOH 1003 4 HOH HOH 1003 A HOH 1004 4 HOH HOH 1004 A HOH 1005 4 HOH HOH 1005 A HOH 1006 4 HOH HOH 1006 A HOH 1007 4 HOH HOH 1007 A HOH 1008 4 HOH HOH 1008 A HOH 1009 4 HOH HOH 1009 A HOH 1010 4 HOH HOH 1010 A HOH 1011 4 HOH HOH 1011 A HOH 1012 4 HOH HOH 1012 A HOH 1013 4 HOH HOH 1013 A HOH 1014 4 HOH HOH 1014 A HOH 1015 4 HOH HOH 1015 A HOH 1016 4 HOH HOH 1016 A HOH 1017 4 HOH HOH 1017 A HOH 1018 4 HOH HOH 1018 A HOH 1019 4 HOH HOH 1019 A HOH 1020 4 HOH HOH 1020 A HOH 1021 4 HOH HOH 1021 A HOH 1022 4 HOH HOH 1022 A HOH 1023 4 HOH HOH 1023 A HOH 1024 4 HOH HOH 1024 A HOH 1025 4 HOH HOH 1025 A HOH 1026 4 HOH HOH 1026 A HOH 1027 4 HOH HOH 1027 A HOH 1028 4 HOH HOH 1028 A HOH 1029 4 HOH HOH 1029 A HOH 1030 4 HOH HOH 1030 A HOH 1031 4 HOH HOH 1031 A HOH 1032 4 HOH HOH 1032 A HOH 1033 4 HOH HOH 1033 A HOH 1034 4 HOH HOH 1034 A HOH 1035 4 HOH HOH 1035 A HOH 1036 4 HOH HOH 1036 A HOH 1037 4 HOH HOH 1037 A HOH 1038 4 HOH HOH 1038 A HOH 1039 4 HOH HOH 1039 A HOH 1040 4 HOH HOH 1040 A HOH 1041 4 HOH HOH 1041 A HOH 1042 4 HOH HOH 1042 A HOH 1043 4 HOH HOH 1043 A HOH 1044 4 HOH HOH 1044 A HOH 1045 4 HOH HOH 1045 A HOH 1046 4 HOH HOH 1046 A HOH 1047 4 HOH HOH 1047 A HOH 1048 4 HOH HOH 1048 A HOH 1049 4 HOH HOH 1049 A HOH 1050 4 HOH HOH 1050 A HOH 1051 4 HOH HOH 1051 A HOH 1052 4 HOH HOH 1052 A HOH 1053 4 HOH HOH 1053 A HOH 1054 4 HOH HOH 1054 A HOH 1055 4 HOH HOH 1055 A HOH 1056 4 HOH HOH 1056 A HOH 1057 4 HOH HOH 1057 A HOH 1058 4 HOH HOH 1058 A HOH 1059 4 HOH HOH 1059 A HOH 1060 4 HOH HOH 1060 A HOH 1061 4 HOH HOH 1061 A HOH 1062 4 HOH HOH 1062 A HOH 1063 4 HOH HOH 1063 A HOH 1064 4 HOH HOH 1064 A HOH 1065 4 HOH HOH 1065 A HOH 1066 4 HOH HOH 1066 A HOH 1067 4 HOH HOH 1067 A HOH 1068 4 HOH HOH 1068 A HOH 1069 4 HOH HOH 1069 A HOH 1070 4 HOH HOH 1070 A HOH 1071 4 HOH HOH 1071 A HOH 1072 4 HOH HOH 1072 A HOH 1073 4 HOH HOH 1073 A HOH 1074 4 HOH HOH 1074 A HOH 1075 4 HOH HOH 1075 A HOH 1076 4 HOH HOH 1076 A HOH 1077 4 HOH HOH 1077 A HOH 1078 4 HOH HOH 1078 A HOH 1079 4 HOH HOH 1079 A HOH 1080 4 HOH HOH 1080 A HOH 1081 4 HOH HOH 1081 A HOH 1082 4 HOH HOH 1082 A HOH 1083 4 HOH HOH 1083 A HOH 1084 4 HOH HOH 1084 A HOH 1085 4 HOH HOH 1085 A HOH 1086 4 HOH HOH 1086 A HOH 1087 4 HOH HOH 1087 A HOH 1088 4 HOH HOH 1088 A HOH 1089 4 HOH HOH 1089 A HOH 1090 4 HOH HOH 1090 A HOH 1091 4 HOH HOH 1091 A HOH 1092 4 HOH HOH 1092 A HOH 1093 4 HOH HOH 1093 A HOH 1094 4 HOH HOH 1094 A HOH 1095 4 HOH HOH 1095 A HOH 1096 4 HOH HOH 1096 A HOH 1097 4 HOH HOH 1097 A HOH 1098 4 HOH HOH 1098 A HOH 1099 4 HOH HOH 1099 A HOH 1100 4 HOH HOH 1100 A HOH 1101 4 HOH HOH 1101 A HOH 1102 4 HOH HOH 1102 A HOH 1103 4 HOH HOH 1103 A HOH 1104 4 HOH HOH 1104 A HOH 1105 4 HOH HOH 1105 A HOH 1106 4 HOH HOH 1106 A HOH 1107 4 HOH HOH 1107 A HOH 1108 4 HOH HOH 1108 A HOH 1109 4 HOH HOH 1109 A HOH 1110 4 HOH HOH 1110 A HOH 1111 4 HOH HOH 1111 A HOH 1112 4 HOH HOH 1112 A HOH 1113 4 HOH HOH 1113 A HOH 1114 4 HOH HOH 1114 A HOH 1115 4 HOH HOH 1115 A HOH 1116 4 HOH HOH 1116 A HOH 1117 4 HOH HOH 1117 A HOH 1118 4 HOH HOH 1118 A HOH 1119 4 HOH HOH 1119 A HOH 1120 4 HOH HOH 1120 A HOH 1121 4 HOH HOH 1121 A HOH 1122 4 HOH HOH 1122 A HOH 1123 4 HOH HOH 1123 A HOH 1124 4 HOH HOH 1124 A HOH 1125 4 HOH HOH 1125 A HOH 1126 4 HOH HOH 1126 A HOH 1127 4 HOH HOH 1127 A HOH 1128 4 HOH HOH 1128 A HOH 1129 4 HOH HOH 1129 A HOH 1130 4 HOH HOH 1130 A HOH 1131 4 HOH HOH 1131 A HOH 1132 4 HOH HOH 1132 A HOH 1133 4 HOH HOH 1133 A HOH 1134 4 HOH HOH 1134 A HOH 1135 4 HOH HOH 1135 A HOH 1136 4 HOH HOH 1136 A HOH 1137 4 HOH HOH 1137 A HOH 1138 4 HOH HOH 1138 A HOH 1139 4 HOH HOH 1139 A HOH 1140 4 HOH HOH 1140 A HOH 1141 4 HOH HOH 1141 A HOH 1142 4 HOH HOH 1142 A HOH 1143 4 HOH HOH 1143 A HOH 1144 4 HOH HOH 1144 A HOH 1145 4 HOH HOH 1145 A HOH 1146 4 HOH HOH 1146 A HOH 1147 4 HOH HOH 1147 A HOH 1148 4 HOH HOH 1148 A HOH 1149 4 HOH HOH 1149 A HOH 1150 4 HOH HOH 1150 A HOH 1151 4 HOH HOH 1151 A HOH 1152 4 HOH HOH 1152 A HOH 1153 4 HOH HOH 1153 A HOH 1154 4 HOH HOH 1154 A HOH 1155 4 HOH HOH 1155 A HOH 1156 4 HOH HOH 1156 A HOH 1157 4 HOH HOH 1157 A HOH 1158 4 HOH HOH 1158 A HOH 1159 4 HOH HOH 1159 A HOH 1160 4 HOH HOH 1160 A HOH 1161 4 HOH HOH 1161 A HOH 1162 4 HOH HOH 1162 A HOH 1163 4 HOH HOH 1163 A HOH 1164 4 HOH HOH 1164 A HOH 1165 4 HOH HOH 1165 A HOH 1166 4 HOH HOH 1166 A HOH 1167 4 HOH HOH 1167 A HOH 1168 4 HOH HOH 1168 A HOH 1169 4 HOH HOH 1169 A HOH 1170 4 HOH HOH 1170 A HOH 1171 4 HOH HOH 1171 A HOH 1172 4 HOH HOH 1172 A VAL 1 n 1 VAL 1 A GLY 2 n 2 GLY 2 A SER 3 n 3 SER 3 A LEU 4 n 4 LEU 4 A ASN 5 n 5 ASN 5 A CYS 6 n 6 CYS 6 A ILE 7 n 7 ILE 7 A VAL 8 n 8 VAL 8 A ALA 9 n 9 ALA 9 A VAL 10 n 10 VAL 10 A SER 11 n 11 SER 11 A GLN 12 n 12 GLN 12 A ASN 13 n 13 ASN 13 A MET 14 n 14 MET 14 A GLY 15 n 15 GLY 15 A ILE 16 n 16 ILE 16 A GLY 17 n 17 GLY 17 A LYS 18 n 18 LYS 18 A ASN 19 n 19 ASN 19 A GLY 20 n 20 GLY 20 A ASP 21 n 21 ASP 21 A LEU 22 n 22 LEU 22 A PRO 23 n 23 PRO 23 A TRP 24 n 24 TRP 24 A PRO 25 n 25 PRO 25 A PRO 26 n 26 PRO 26 A LEU 27 n 27 LEU 27 A ARG 28 n 28 ARG 28 A ASN 29 n 29 ASN 29 A GLU 30 n 30 GLU 30 A PHE 31 n 31 PHE 31 A ARG 32 n 32 ARG 32 A TYR 33 n 33 TYR 33 A PHE 34 n 34 PHE 34 A GLN 35 n 35 GLN 35 A ARG 36 n 36 ARG 36 A MET 37 n 37 MET 37 A THR 38 n 38 THR 38 A THR 39 n 39 THR 39 A THR 40 n 40 THR 40 A SER 41 n 41 SER 41 A SER 42 n 42 SER 42 A VAL 43 n 43 VAL 43 A GLU 44 n 44 GLU 44 A GLY 45 n 45 GLY 45 A LYS 46 n 46 LYS 46 A GLN 47 n 47 GLN 47 A ASN 48 n 48 ASN 48 A LEU 49 n 49 LEU 49 A VAL 50 n 50 VAL 50 A ILE 51 n 51 ILE 51 A MET 52 n 52 MET 52 A GLY 53 n 53 GLY 53 A LYS 54 n 54 LYS 54 A LYS 55 n 55 LYS 55 A THR 56 n 56 THR 56 A TRP 57 n 57 TRP 57 A PHE 58 n 58 PHE 58 A SER 59 n 59 SER 59 A ILE 60 n 60 ILE 60 A PRO 61 n 61 PRO 61 A GLU 62 n 62 GLU 62 A LYS 63 n 63 LYS 63 A ASN 64 n 64 ASN 64 A ARG 65 n 65 ARG 65 A PRO 66 n 66 PRO 66 A LEU 67 n 67 LEU 67 A LYS 68 n 68 LYS 68 A GLY 69 n 69 GLY 69 A ARG 70 n 70 ARG 70 A ILE 71 n 71 ILE 71 A ASN 72 n 72 ASN 72 A LEU 73 n 73 LEU 73 A VAL 74 n 74 VAL 74 A LEU 75 n 75 LEU 75 A SER 76 n 76 SER 76 A ARG 77 n 77 ARG 77 A GLU 78 n 78 GLU 78 A LEU 79 n 79 LEU 79 A LYS 80 n 80 LYS 80 A GLU 81 n 81 GLU 81 A PRO 82 n 82 PRO 82 A PRO 83 n 83 PRO 83 A GLN 84 n 84 GLN 84 A GLY 85 n 85 GLY 85 A ALA 86 n 86 ALA 86 A HIS 87 n 87 HIS 87 A PHE 88 n 88 PHE 88 A LEU 89 n 89 LEU 89 A SER 90 n 90 SER 90 A ARG 91 n 91 ARG 91 A SER 92 n 92 SER 92 A LEU 93 n 93 LEU 93 A ASP 94 n 94 ASP 94 A ASP 95 n 95 ASP 95 A ALA 96 n 96 ALA 96 A LEU 97 n 97 LEU 97 A LYS 98 n 98 LYS 98 A LEU 99 n 99 LEU 99 A THR 100 n 100 THR 100 A GLU 101 n 101 GLU 101 A GLN 102 n 102 GLN 102 A PRO 103 n 103 PRO 103 A GLU 104 n 104 GLU 104 A LEU 105 n 105 LEU 105 A ALA 106 n 106 ALA 106 A ASN 107 n 107 ASN 107 A LYS 108 n 108 LYS 108 A VAL 109 n 109 VAL 109 A ASP 110 n 110 ASP 110 A MET 111 n 111 MET 111 A VAL 112 n 112 VAL 112 A TRP 113 n 113 TRP 113 A ILE 114 n 114 ILE 114 A VAL 115 n 115 VAL 115 A GLY 116 n 116 GLY 116 A GLY 117 n 117 GLY 117 A SER 118 n 118 SER 118 A SER 119 n 119 SER 119 A VAL 120 n 120 VAL 120 A TYR 121 n 121 TYR 121 A LYS 122 n 122 LYS 122 A GLU 123 n 123 GLU 123 A ALA 124 n 124 ALA 124 A MET 125 n 125 MET 125 A ASN 126 n 126 ASN 126 A HIS 127 n 127 HIS 127 A PRO 128 n 128 PRO 128 A GLY 129 n 129 GLY 129 A HIS 130 n 130 HIS 130 A LEU 131 n 131 LEU 131 A LYS 132 n 132 LYS 132 A LEU 133 n 133 LEU 133 A PHE 134 n 134 PHE 134 A VAL 135 n 135 VAL 135 A THR 136 n 136 THR 136 A ARG 137 n 137 ARG 137 A ILE 138 n 138 ILE 138 A MET 139 n 139 MET 139 A GLN 140 n 140 GLN 140 A ASP 141 n 141 ASP 141 A PHE 142 n 142 PHE 142 A GLU 143 n 143 GLU 143 A SER 144 n 144 SER 144 A ASP 145 n 145 ASP 145 A THR 146 n 146 THR 146 A PHE 147 n 147 PHE 147 A PHE 148 n 148 PHE 148 A PRO 149 n 149 PRO 149 A GLU 150 n 150 GLU 150 A ILE 151 n 151 ILE 151 A ASP 152 n 152 ASP 152 A LEU 153 n 153 LEU 153 A GLU 154 n 154 GLU 154 A LYS 155 n 155 LYS 155 A TYR 156 n 156 TYR 156 A LYS 157 n 157 LYS 157 A LEU 158 n 158 LEU 158 A LEU 159 n 159 LEU 159 A PRO 160 n 160 PRO 160 A GLU 161 n 161 GLU 161 A TYR 162 n 162 TYR 162 A PRO 163 n 163 PRO 163 A GLY 164 n 164 GLY 164 A VAL 165 n 165 VAL 165 A LEU 166 n 166 LEU 166 A SER 167 n 167 SER 167 A ASP 168 n 168 ASP 168 A VAL 169 n 169 VAL 169 A GLN 170 n 170 GLN 170 A GLU 171 n 171 GLU 171 A GLU 172 n 172 GLU 172 A LYS 173 n 173 LYS 173 A GLY 174 n 174 GLY 174 A ILE 175 n 175 ILE 175 A LYS 176 n 176 LYS 176 A TYR 177 n 177 TYR 177 A LYS 178 n 178 LYS 178 A PHE 179 n 179 PHE 179 A GLU 180 n 180 GLU 180 A VAL 181 n 181 VAL 181 A TYR 182 n 182 TYR 182 A GLU 183 n 183 GLU 183 A LYS 184 n 184 LYS 184 A ASN 185 n 185 ASN 185 A ASP 186 n 186 ASP 186 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O PHE 88 A O PHE 88 A N ASN 72 A N ASN 72 A O LEU 75 A O LEU 75 A N MET 52 A N MET 52 A N LEU 49 A N LEU 49 A O TRP 113 A O TRP 113 A O ILE 114 A O ILE 114 A N ASN 5 A N ASN 5 A N CYS 6 A N CYS 6 A O PHE 134 A O PHE 134 A N ARG 137 A N ARG 137 A O LYS 178 A O LYS 178 A O GLU 183 A O GLU 183 A N LYS 157 A N LYS 157 A O PHE 88 A O PHE 88 A N ASN 72 A N ASN 72 A O LEU 75 A O LEU 75 A N MET 52 A N MET 52 A N LEU 49 A N LEU 49 A O TRP 113 A O TRP 113 A O ILE 114 A O ILE 114 A N ASN 5 A N ASN 5 A N CYS 6 A N CYS 6 A O PHE 134 A O PHE 134 A N ARG 137 A N ARG 137 A O LYS 178 A O LYS 178 A O TYR 177 A O TYR 177 A N GLN 170 A N GLN 170 A N ILE 16 A N ILE 16 A O THR 146 A O THR 146 1 A SER 76 -173.52 144.04 1 A ALA 106 -26.64 -48.98 1 A ASP 110 -92.92 -96.99 1 A MET 139 -79.37 48.79 protein_rep.param protein.top water.param ligands.top ligands.param water.top 73.700 32.2186 15.600 2.3500 0.0000 0.0000 2.3500 0.0000 -4.7000 BULK SOLVENT MODEL USED 0.2490 0.0100 0.2050 2.0500 33.3100 655 13122 5.0000 99.8000 1.000 1.000 RANDOM 274879.0000 0.0000 1 RESTRAINED THROUGHOUT 0.000 MOLECULAR REPLACEMENT 1HFR FLAT MODEL 69.3711 0.4000 0.320 0.250 5.000 0.300 0.220 2.0500 33.3100 172 1748 74 0 1502 0.007 1.400 23.600 0.880 1.380 1.500 2.170 2.000 1.960 2.000 2.800 2.500 0.4240 0.0550 0.3070 2.1200 59 1257 1316 10 4.5000 100.0000 2.050 33.310 4DDR 13123 0.070 1.000 1 5.200 1.640 312 95.100 0.244 2.050 2.120 1.800 4018 2454 0.730 1 1.640 93.200 0.205 2.120 2.210 2.200 4056 2463 0.710 1 1.650 93.600 0.173 2.210 2.310 2.700 4055 2464 0.810 1 1.650 93.800 0.139 2.310 2.430 3.200 4063 2445 0.750 1 1.660 93.700 0.121 2.430 2.580 3.900 4081 2463 0.860 1 1.660 94.400 0.109 2.580 2.780 4.500 4158 2496 0.960 1 1.660 3 94.900 0.088 2.780 3.060 5.800 4181 2522 1.140 1 1.660 2 95.200 0.065 3.060 3.500 7.700 4153 2514 1.350 1 1.650 16 96.500 0.051 3.500 4.410 9.500 4258 2587 1.500 1 1.620 67 97.900 0.049 4.410 33.310 10.100 4261 2561 1.240 1 1.580 224 97.500 data scaling Jim W. Pflugrath Jim.Pflugrath@Rigaku.com May 1 2001 http://www.rigaku.com/software/dtrek.html d*TREK package 7.1SSI data reduction Jim W. Pflugrath Jim.Pflugrath@Rigaku.com May 1 2001 http://www.rigaku.com/software/dtrek.html d*TREK package 7.1SSI phasing Alexei Vaguine alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns-online.org/ CNS package 1.2 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data collection CrystalClear data reduction CrystalClear data scaling CrystalClear Human dihydrofolate reductase complexed with NADPH and P218 1 N N 2 N N 3 N N 4 N N A LEU 27 A LEU 27 HELX_P A THR 40 A THR 40 1 1 14 A LYS 54 A LYS 54 HELX_P A ILE 60 A ILE 60 1 2 7 A PRO 61 A PRO 61 HELX_P A ARG 65 A ARG 65 5 3 5 A SER 92 A SER 92 HELX_P A GLU 101 A GLU 101 1 4 10 A GLN 102 A GLN 102 HELX_P A ASN 107 A ASN 107 1 5 6 A GLY 117 A GLY 117 HELX_P A ASN 126 A ASN 126 1 6 10 OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR antifolate, NADPH, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR complex A ARG 65 A ARG 65 1 A PRO 66 A PRO 66 -0.96 A GLY 116 A GLY 116 1 A GLY 117 A GLY 117 0.58 DYR_HUMAN UNP 1 2 P00374 VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELK EPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLP EYPGVLSDVQEEKGIKYKFEVYEKND 2 187 4DDR 1 186 P00374 A 1 1 186 8 8 2 parallel parallel parallel parallel parallel anti-parallel anti-parallel parallel parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel A PHE 88 A PHE 88 A SER 90 A SER 90 A ILE 71 A ILE 71 A LEU 75 A LEU 75 A GLN 47 A GLN 47 A GLY 53 A GLY 53 A VAL 109 A VAL 109 A ILE 114 A ILE 114 A LEU 4 A LEU 4 A VAL 10 A VAL 10 A HIS 130 A HIS 130 A ILE 138 A ILE 138 A ILE 175 A ILE 175 A ASN 185 A ASN 185 A LYS 157 A LYS 157 A LEU 158 A LEU 158 A PHE 88 A PHE 88 A SER 90 A SER 90 A ILE 71 A ILE 71 A LEU 75 A LEU 75 A GLN 47 A GLN 47 A GLY 53 A GLY 53 A VAL 109 A VAL 109 A ILE 114 A ILE 114 A LEU 4 A LEU 4 A VAL 10 A VAL 10 A HIS 130 A HIS 130 A ILE 138 A ILE 138 A ILE 175 A ILE 175 A ASN 185 A ASN 185 A GLN 170 A GLN 170 A GLU 172 A GLU 172 A GLY 15 A GLY 15 A GLY 17 A GLY 17 A THR 146 A THR 146 A PHE 147 A PHE 147 BINDING SITE FOR RESIDUE NDP A 201 A NDP 201 Software 33 BINDING SITE FOR RESIDUE MMV A 202 A MMV 202 Software 16 A VAL 8 A VAL 8 33 1_555 A ALA 9 A ALA 9 33 1_555 A ILE 16 A ILE 16 33 1_555 A GLY 17 A GLY 17 33 1_555 A LYS 18 A LYS 18 33 1_555 A GLY 20 A GLY 20 33 1_555 A ASP 21 A ASP 21 33 1_555 A GLY 53 A GLY 53 33 1_555 A LYS 54 A LYS 54 33 1_555 A LYS 55 A LYS 55 33 1_555 A THR 56 A THR 56 33 1_555 A SER 59 A SER 59 33 1_555 A LEU 75 A LEU 75 33 1_555 A SER 76 A SER 76 33 1_555 A ARG 77 A ARG 77 33 1_555 A GLU 78 A GLU 78 33 1_555 A ARG 91 A ARG 91 33 1_555 A SER 92 A SER 92 33 1_555 A VAL 115 A VAL 115 33 1_555 A GLY 116 A GLY 116 33 1_555 A GLY 117 A GLY 117 33 1_555 A SER 118 A SER 118 33 1_555 A VAL 120 A VAL 120 33 1_555 A TYR 121 A TYR 121 33 1_555 A THR 146 A THR 146 33 1_555 A MMV 202 C MMV 33 1_555 A HOH 1001 D HOH 33 1_555 A HOH 1004 D HOH 33 1_555 A HOH 1013 D HOH 33 1_555 A HOH 1057 D HOH 33 1_555 A HOH 1063 D HOH 33 1_555 A HOH 1077 D HOH 33 1_555 A HOH 1137 D HOH 33 1_555 A ILE 7 A ILE 7 16 1_555 A VAL 8 A VAL 8 16 1_555 A ALA 9 A ALA 9 16 1_555 A ASP 21 A ASP 21 16 1_555 A LEU 22 A LEU 22 16 1_555 A GLU 30 A GLU 30 16 1_555 A PHE 31 A PHE 31 16 1_555 A PHE 34 A PHE 34 16 1_555 A SER 59 A SER 59 16 1_555 A VAL 115 A VAL 115 16 1_555 A TYR 121 A TYR 121 16 1_555 A THR 136 A THR 136 16 1_555 A NDP 201 B NDP 16 1_555 A HOH 1054 D HOH 16 1_555 A HOH 1122 D HOH 16 1_555 A HOH 1139 D HOH 16 1_555 146 H 3