0.011725
0.006770
0.000000
0.000000
0.013539
0.000000
0.000000
0.000000
0.012965
0.000000
0.000000
0.000000
Yuthavong, Y.
Tarnchompoo, B.
Vilaivan, T.
Chitnumsub, P.
Kamchonwongpaisan, S.
Charman, S.A.
McLennan, D.N.
White, K.L.
Vivas, L.
Bongard, E.
Thongphanchang, C.
Taweechai, S.
Vanichtanankul, J.
Rattanajak, R.
Arwon, U.
Fantauzzi, P.
Yuvaniyama, J.
Charman, W.N.
Matthews, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
9
90.000
90.000
120.000
85.285
85.285
77.131
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C18 H24 N4 O4
360.408
3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid
non-polymer
C21 H30 N7 O17 P3
745.421
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
Y
250
N
C
Y
251
N
N
Y
252
N
C
Y
253
N
N
Y
254
N
C
Y
255
N
C
N
256
N
N
N
257
N
N
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
O
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
O
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
S
P
N
301
N
O
N
302
N
O
N
303
N
O
N
304
N
C
N
305
R
C
N
306
N
O
N
307
R
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
R
C
Y
312
N
N
Y
313
N
C
Y
314
N
N
Y
315
N
C
Y
316
N
C
N
317
N
N
Y
318
N
N
Y
319
N
C
Y
320
N
N
Y
321
N
C
N
322
N
O
N
323
S
P
N
324
N
O
N
325
N
O
N
326
N
O
N
327
N
C
N
328
R
C
N
329
N
O
N
330
S
C
N
331
N
O
N
332
R
C
N
333
N
O
N
334
R
C
N
335
N
N
N
336
N
C
N
337
N
C
N
338
N
C
N
339
N
O
N
340
N
N
N
341
N
C
N
342
N
C
N
343
N
C
N
344
N
P
N
345
N
O
N
346
N
O
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
N
406
N
C
N
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
N
423
N
O
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
R
C
N
437
N
O
N
438
N
C
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
N
N
450
S
C
N
451
N
C
N
452
N
O
N
453
N
C
Y
454
N
C
Y
455
N
C
Y
456
N
C
Y
457
N
N
Y
458
N
C
Y
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
N
N
477
S
C
N
478
N
C
N
479
N
O
N
480
N
C
Y
481
N
C
Y
482
N
C
Y
483
N
C
Y
484
N
C
Y
485
N
C
Y
486
N
C
N
487
N
O
N
488
N
O
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
N
N
501
S
C
N
502
N
C
N
503
N
O
N
504
N
C
N
505
N
C
N
506
N
C
N
507
N
O
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
Y
238
N
doub
Y
239
N
sing
Y
240
N
sing
Y
241
N
doub
N
242
N
sing
N
243
N
sing
Y
244
N
doub
N
245
N
doub
N
246
N
sing
Y
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
Y
255
N
doub
Y
256
N
sing
Y
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
doub
Y
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
Y
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
sing
Y
316
N
sing
Y
317
N
doub
N
318
N
sing
Y
319
N
doub
N
320
N
sing
N
321
N
sing
Y
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
Y
381
N
doub
Y
382
N
sing
Y
383
N
sing
N
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
doub
N
388
N
sing
Y
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
doub
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
Y
450
N
doub
Y
451
N
sing
Y
452
N
sing
N
453
N
sing
Y
454
N
doub
Y
455
N
sing
Y
456
N
sing
N
457
N
sing
Y
458
N
sing
Y
459
N
doub
N
460
N
sing
Y
461
N
doub
N
462
N
sing
Y
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
doub
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
Y
478
N
doub
Y
479
N
sing
Y
480
N
sing
N
481
N
sing
Y
482
N
doub
N
483
N
sing
Y
484
N
doub
N
485
N
sing
Y
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
doub
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
109
16823
16828
10.1073/pnas.1204556109
23035243
Malarial dihydrofolate reductase as a paradigm for drug development against a resistance-compromised target
2012
10.2210/pdb4ddr/pdb
pdb_00004ddr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
IMAGE PLATE
2008-10-01
RIGAKU RAXIS IV++
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH3R
21349.525
Dihydrofolate reductase
1.5.1.3
1
man
polymer
745.421
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
1
syn
non-polymer
360.408
3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid
1
syn
non-polymer
18.015
water
172
nat
water
no
no
VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELK
EPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLP
EYPGVLSDVQEEKGIKYKFEVYEKND
VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELK
EPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLP
EYPGVLSDVQEEKGIKYKFEVYEKND
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
DHFR
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)
plasmid
pET17b
1
2.53
51.36
0.670
VAPOR DIFFUSION, HANGING DROP
2.78M Ammonium sulphate, 100mM K2HPO4, 3%(v/v) Ethanol, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-11-14
1
1
2023-11-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2012-01-19
REL
REL
NDP
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
MMV
3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid
HOH
water
1HFR
PDB
experimental model
NDP
187
2
NDP
NDP
201
A
MMV
188
3
MMV
MMV
202
A
HOH
1001
4
HOH
HOH
1001
A
HOH
1002
4
HOH
HOH
1002
A
HOH
1003
4
HOH
HOH
1003
A
HOH
1004
4
HOH
HOH
1004
A
HOH
1005
4
HOH
HOH
1005
A
HOH
1006
4
HOH
HOH
1006
A
HOH
1007
4
HOH
HOH
1007
A
HOH
1008
4
HOH
HOH
1008
A
HOH
1009
4
HOH
HOH
1009
A
HOH
1010
4
HOH
HOH
1010
A
HOH
1011
4
HOH
HOH
1011
A
HOH
1012
4
HOH
HOH
1012
A
HOH
1013
4
HOH
HOH
1013
A
HOH
1014
4
HOH
HOH
1014
A
HOH
1015
4
HOH
HOH
1015
A
HOH
1016
4
HOH
HOH
1016
A
HOH
1017
4
HOH
HOH
1017
A
HOH
1018
4
HOH
HOH
1018
A
HOH
1019
4
HOH
HOH
1019
A
HOH
1020
4
HOH
HOH
1020
A
HOH
1021
4
HOH
HOH
1021
A
HOH
1022
4
HOH
HOH
1022
A
HOH
1023
4
HOH
HOH
1023
A
HOH
1024
4
HOH
HOH
1024
A
HOH
1025
4
HOH
HOH
1025
A
HOH
1026
4
HOH
HOH
1026
A
HOH
1027
4
HOH
HOH
1027
A
HOH
1028
4
HOH
HOH
1028
A
HOH
1029
4
HOH
HOH
1029
A
HOH
1030
4
HOH
HOH
1030
A
HOH
1031
4
HOH
HOH
1031
A
HOH
1032
4
HOH
HOH
1032
A
HOH
1033
4
HOH
HOH
1033
A
HOH
1034
4
HOH
HOH
1034
A
HOH
1035
4
HOH
HOH
1035
A
HOH
1036
4
HOH
HOH
1036
A
HOH
1037
4
HOH
HOH
1037
A
HOH
1038
4
HOH
HOH
1038
A
HOH
1039
4
HOH
HOH
1039
A
HOH
1040
4
HOH
HOH
1040
A
HOH
1041
4
HOH
HOH
1041
A
HOH
1042
4
HOH
HOH
1042
A
HOH
1043
4
HOH
HOH
1043
A
HOH
1044
4
HOH
HOH
1044
A
HOH
1045
4
HOH
HOH
1045
A
HOH
1046
4
HOH
HOH
1046
A
HOH
1047
4
HOH
HOH
1047
A
HOH
1048
4
HOH
HOH
1048
A
HOH
1049
4
HOH
HOH
1049
A
HOH
1050
4
HOH
HOH
1050
A
HOH
1051
4
HOH
HOH
1051
A
HOH
1052
4
HOH
HOH
1052
A
HOH
1053
4
HOH
HOH
1053
A
HOH
1054
4
HOH
HOH
1054
A
HOH
1055
4
HOH
HOH
1055
A
HOH
1056
4
HOH
HOH
1056
A
HOH
1057
4
HOH
HOH
1057
A
HOH
1058
4
HOH
HOH
1058
A
HOH
1059
4
HOH
HOH
1059
A
HOH
1060
4
HOH
HOH
1060
A
HOH
1061
4
HOH
HOH
1061
A
HOH
1062
4
HOH
HOH
1062
A
HOH
1063
4
HOH
HOH
1063
A
HOH
1064
4
HOH
HOH
1064
A
HOH
1065
4
HOH
HOH
1065
A
HOH
1066
4
HOH
HOH
1066
A
HOH
1067
4
HOH
HOH
1067
A
HOH
1068
4
HOH
HOH
1068
A
HOH
1069
4
HOH
HOH
1069
A
HOH
1070
4
HOH
HOH
1070
A
HOH
1071
4
HOH
HOH
1071
A
HOH
1072
4
HOH
HOH
1072
A
HOH
1073
4
HOH
HOH
1073
A
HOH
1074
4
HOH
HOH
1074
A
HOH
1075
4
HOH
HOH
1075
A
HOH
1076
4
HOH
HOH
1076
A
HOH
1077
4
HOH
HOH
1077
A
HOH
1078
4
HOH
HOH
1078
A
HOH
1079
4
HOH
HOH
1079
A
HOH
1080
4
HOH
HOH
1080
A
HOH
1081
4
HOH
HOH
1081
A
HOH
1082
4
HOH
HOH
1082
A
HOH
1083
4
HOH
HOH
1083
A
HOH
1084
4
HOH
HOH
1084
A
HOH
1085
4
HOH
HOH
1085
A
HOH
1086
4
HOH
HOH
1086
A
HOH
1087
4
HOH
HOH
1087
A
HOH
1088
4
HOH
HOH
1088
A
HOH
1089
4
HOH
HOH
1089
A
HOH
1090
4
HOH
HOH
1090
A
HOH
1091
4
HOH
HOH
1091
A
HOH
1092
4
HOH
HOH
1092
A
HOH
1093
4
HOH
HOH
1093
A
HOH
1094
4
HOH
HOH
1094
A
HOH
1095
4
HOH
HOH
1095
A
HOH
1096
4
HOH
HOH
1096
A
HOH
1097
4
HOH
HOH
1097
A
HOH
1098
4
HOH
HOH
1098
A
HOH
1099
4
HOH
HOH
1099
A
HOH
1100
4
HOH
HOH
1100
A
HOH
1101
4
HOH
HOH
1101
A
HOH
1102
4
HOH
HOH
1102
A
HOH
1103
4
HOH
HOH
1103
A
HOH
1104
4
HOH
HOH
1104
A
HOH
1105
4
HOH
HOH
1105
A
HOH
1106
4
HOH
HOH
1106
A
HOH
1107
4
HOH
HOH
1107
A
HOH
1108
4
HOH
HOH
1108
A
HOH
1109
4
HOH
HOH
1109
A
HOH
1110
4
HOH
HOH
1110
A
HOH
1111
4
HOH
HOH
1111
A
HOH
1112
4
HOH
HOH
1112
A
HOH
1113
4
HOH
HOH
1113
A
HOH
1114
4
HOH
HOH
1114
A
HOH
1115
4
HOH
HOH
1115
A
HOH
1116
4
HOH
HOH
1116
A
HOH
1117
4
HOH
HOH
1117
A
HOH
1118
4
HOH
HOH
1118
A
HOH
1119
4
HOH
HOH
1119
A
HOH
1120
4
HOH
HOH
1120
A
HOH
1121
4
HOH
HOH
1121
A
HOH
1122
4
HOH
HOH
1122
A
HOH
1123
4
HOH
HOH
1123
A
HOH
1124
4
HOH
HOH
1124
A
HOH
1125
4
HOH
HOH
1125
A
HOH
1126
4
HOH
HOH
1126
A
HOH
1127
4
HOH
HOH
1127
A
HOH
1128
4
HOH
HOH
1128
A
HOH
1129
4
HOH
HOH
1129
A
HOH
1130
4
HOH
HOH
1130
A
HOH
1131
4
HOH
HOH
1131
A
HOH
1132
4
HOH
HOH
1132
A
HOH
1133
4
HOH
HOH
1133
A
HOH
1134
4
HOH
HOH
1134
A
HOH
1135
4
HOH
HOH
1135
A
HOH
1136
4
HOH
HOH
1136
A
HOH
1137
4
HOH
HOH
1137
A
HOH
1138
4
HOH
HOH
1138
A
HOH
1139
4
HOH
HOH
1139
A
HOH
1140
4
HOH
HOH
1140
A
HOH
1141
4
HOH
HOH
1141
A
HOH
1142
4
HOH
HOH
1142
A
HOH
1143
4
HOH
HOH
1143
A
HOH
1144
4
HOH
HOH
1144
A
HOH
1145
4
HOH
HOH
1145
A
HOH
1146
4
HOH
HOH
1146
A
HOH
1147
4
HOH
HOH
1147
A
HOH
1148
4
HOH
HOH
1148
A
HOH
1149
4
HOH
HOH
1149
A
HOH
1150
4
HOH
HOH
1150
A
HOH
1151
4
HOH
HOH
1151
A
HOH
1152
4
HOH
HOH
1152
A
HOH
1153
4
HOH
HOH
1153
A
HOH
1154
4
HOH
HOH
1154
A
HOH
1155
4
HOH
HOH
1155
A
HOH
1156
4
HOH
HOH
1156
A
HOH
1157
4
HOH
HOH
1157
A
HOH
1158
4
HOH
HOH
1158
A
HOH
1159
4
HOH
HOH
1159
A
HOH
1160
4
HOH
HOH
1160
A
HOH
1161
4
HOH
HOH
1161
A
HOH
1162
4
HOH
HOH
1162
A
HOH
1163
4
HOH
HOH
1163
A
HOH
1164
4
HOH
HOH
1164
A
HOH
1165
4
HOH
HOH
1165
A
HOH
1166
4
HOH
HOH
1166
A
HOH
1167
4
HOH
HOH
1167
A
HOH
1168
4
HOH
HOH
1168
A
HOH
1169
4
HOH
HOH
1169
A
HOH
1170
4
HOH
HOH
1170
A
HOH
1171
4
HOH
HOH
1171
A
HOH
1172
4
HOH
HOH
1172
A
VAL
1
n
1
VAL
1
A
GLY
2
n
2
GLY
2
A
SER
3
n
3
SER
3
A
LEU
4
n
4
LEU
4
A
ASN
5
n
5
ASN
5
A
CYS
6
n
6
CYS
6
A
ILE
7
n
7
ILE
7
A
VAL
8
n
8
VAL
8
A
ALA
9
n
9
ALA
9
A
VAL
10
n
10
VAL
10
A
SER
11
n
11
SER
11
A
GLN
12
n
12
GLN
12
A
ASN
13
n
13
ASN
13
A
MET
14
n
14
MET
14
A
GLY
15
n
15
GLY
15
A
ILE
16
n
16
ILE
16
A
GLY
17
n
17
GLY
17
A
LYS
18
n
18
LYS
18
A
ASN
19
n
19
ASN
19
A
GLY
20
n
20
GLY
20
A
ASP
21
n
21
ASP
21
A
LEU
22
n
22
LEU
22
A
PRO
23
n
23
PRO
23
A
TRP
24
n
24
TRP
24
A
PRO
25
n
25
PRO
25
A
PRO
26
n
26
PRO
26
A
LEU
27
n
27
LEU
27
A
ARG
28
n
28
ARG
28
A
ASN
29
n
29
ASN
29
A
GLU
30
n
30
GLU
30
A
PHE
31
n
31
PHE
31
A
ARG
32
n
32
ARG
32
A
TYR
33
n
33
TYR
33
A
PHE
34
n
34
PHE
34
A
GLN
35
n
35
GLN
35
A
ARG
36
n
36
ARG
36
A
MET
37
n
37
MET
37
A
THR
38
n
38
THR
38
A
THR
39
n
39
THR
39
A
THR
40
n
40
THR
40
A
SER
41
n
41
SER
41
A
SER
42
n
42
SER
42
A
VAL
43
n
43
VAL
43
A
GLU
44
n
44
GLU
44
A
GLY
45
n
45
GLY
45
A
LYS
46
n
46
LYS
46
A
GLN
47
n
47
GLN
47
A
ASN
48
n
48
ASN
48
A
LEU
49
n
49
LEU
49
A
VAL
50
n
50
VAL
50
A
ILE
51
n
51
ILE
51
A
MET
52
n
52
MET
52
A
GLY
53
n
53
GLY
53
A
LYS
54
n
54
LYS
54
A
LYS
55
n
55
LYS
55
A
THR
56
n
56
THR
56
A
TRP
57
n
57
TRP
57
A
PHE
58
n
58
PHE
58
A
SER
59
n
59
SER
59
A
ILE
60
n
60
ILE
60
A
PRO
61
n
61
PRO
61
A
GLU
62
n
62
GLU
62
A
LYS
63
n
63
LYS
63
A
ASN
64
n
64
ASN
64
A
ARG
65
n
65
ARG
65
A
PRO
66
n
66
PRO
66
A
LEU
67
n
67
LEU
67
A
LYS
68
n
68
LYS
68
A
GLY
69
n
69
GLY
69
A
ARG
70
n
70
ARG
70
A
ILE
71
n
71
ILE
71
A
ASN
72
n
72
ASN
72
A
LEU
73
n
73
LEU
73
A
VAL
74
n
74
VAL
74
A
LEU
75
n
75
LEU
75
A
SER
76
n
76
SER
76
A
ARG
77
n
77
ARG
77
A
GLU
78
n
78
GLU
78
A
LEU
79
n
79
LEU
79
A
LYS
80
n
80
LYS
80
A
GLU
81
n
81
GLU
81
A
PRO
82
n
82
PRO
82
A
PRO
83
n
83
PRO
83
A
GLN
84
n
84
GLN
84
A
GLY
85
n
85
GLY
85
A
ALA
86
n
86
ALA
86
A
HIS
87
n
87
HIS
87
A
PHE
88
n
88
PHE
88
A
LEU
89
n
89
LEU
89
A
SER
90
n
90
SER
90
A
ARG
91
n
91
ARG
91
A
SER
92
n
92
SER
92
A
LEU
93
n
93
LEU
93
A
ASP
94
n
94
ASP
94
A
ASP
95
n
95
ASP
95
A
ALA
96
n
96
ALA
96
A
LEU
97
n
97
LEU
97
A
LYS
98
n
98
LYS
98
A
LEU
99
n
99
LEU
99
A
THR
100
n
100
THR
100
A
GLU
101
n
101
GLU
101
A
GLN
102
n
102
GLN
102
A
PRO
103
n
103
PRO
103
A
GLU
104
n
104
GLU
104
A
LEU
105
n
105
LEU
105
A
ALA
106
n
106
ALA
106
A
ASN
107
n
107
ASN
107
A
LYS
108
n
108
LYS
108
A
VAL
109
n
109
VAL
109
A
ASP
110
n
110
ASP
110
A
MET
111
n
111
MET
111
A
VAL
112
n
112
VAL
112
A
TRP
113
n
113
TRP
113
A
ILE
114
n
114
ILE
114
A
VAL
115
n
115
VAL
115
A
GLY
116
n
116
GLY
116
A
GLY
117
n
117
GLY
117
A
SER
118
n
118
SER
118
A
SER
119
n
119
SER
119
A
VAL
120
n
120
VAL
120
A
TYR
121
n
121
TYR
121
A
LYS
122
n
122
LYS
122
A
GLU
123
n
123
GLU
123
A
ALA
124
n
124
ALA
124
A
MET
125
n
125
MET
125
A
ASN
126
n
126
ASN
126
A
HIS
127
n
127
HIS
127
A
PRO
128
n
128
PRO
128
A
GLY
129
n
129
GLY
129
A
HIS
130
n
130
HIS
130
A
LEU
131
n
131
LEU
131
A
LYS
132
n
132
LYS
132
A
LEU
133
n
133
LEU
133
A
PHE
134
n
134
PHE
134
A
VAL
135
n
135
VAL
135
A
THR
136
n
136
THR
136
A
ARG
137
n
137
ARG
137
A
ILE
138
n
138
ILE
138
A
MET
139
n
139
MET
139
A
GLN
140
n
140
GLN
140
A
ASP
141
n
141
ASP
141
A
PHE
142
n
142
PHE
142
A
GLU
143
n
143
GLU
143
A
SER
144
n
144
SER
144
A
ASP
145
n
145
ASP
145
A
THR
146
n
146
THR
146
A
PHE
147
n
147
PHE
147
A
PHE
148
n
148
PHE
148
A
PRO
149
n
149
PRO
149
A
GLU
150
n
150
GLU
150
A
ILE
151
n
151
ILE
151
A
ASP
152
n
152
ASP
152
A
LEU
153
n
153
LEU
153
A
GLU
154
n
154
GLU
154
A
LYS
155
n
155
LYS
155
A
TYR
156
n
156
TYR
156
A
LYS
157
n
157
LYS
157
A
LEU
158
n
158
LEU
158
A
LEU
159
n
159
LEU
159
A
PRO
160
n
160
PRO
160
A
GLU
161
n
161
GLU
161
A
TYR
162
n
162
TYR
162
A
PRO
163
n
163
PRO
163
A
GLY
164
n
164
GLY
164
A
VAL
165
n
165
VAL
165
A
LEU
166
n
166
LEU
166
A
SER
167
n
167
SER
167
A
ASP
168
n
168
ASP
168
A
VAL
169
n
169
VAL
169
A
GLN
170
n
170
GLN
170
A
GLU
171
n
171
GLU
171
A
GLU
172
n
172
GLU
172
A
LYS
173
n
173
LYS
173
A
GLY
174
n
174
GLY
174
A
ILE
175
n
175
ILE
175
A
LYS
176
n
176
LYS
176
A
TYR
177
n
177
TYR
177
A
LYS
178
n
178
LYS
178
A
PHE
179
n
179
PHE
179
A
GLU
180
n
180
GLU
180
A
VAL
181
n
181
VAL
181
A
TYR
182
n
182
TYR
182
A
GLU
183
n
183
GLU
183
A
LYS
184
n
184
LYS
184
A
ASN
185
n
185
ASN
185
A
ASP
186
n
186
ASP
186
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
88
A
O
PHE
88
A
N
ASN
72
A
N
ASN
72
A
O
LEU
75
A
O
LEU
75
A
N
MET
52
A
N
MET
52
A
N
LEU
49
A
N
LEU
49
A
O
TRP
113
A
O
TRP
113
A
O
ILE
114
A
O
ILE
114
A
N
ASN
5
A
N
ASN
5
A
N
CYS
6
A
N
CYS
6
A
O
PHE
134
A
O
PHE
134
A
N
ARG
137
A
N
ARG
137
A
O
LYS
178
A
O
LYS
178
A
O
GLU
183
A
O
GLU
183
A
N
LYS
157
A
N
LYS
157
A
O
PHE
88
A
O
PHE
88
A
N
ASN
72
A
N
ASN
72
A
O
LEU
75
A
O
LEU
75
A
N
MET
52
A
N
MET
52
A
N
LEU
49
A
N
LEU
49
A
O
TRP
113
A
O
TRP
113
A
O
ILE
114
A
O
ILE
114
A
N
ASN
5
A
N
ASN
5
A
N
CYS
6
A
N
CYS
6
A
O
PHE
134
A
O
PHE
134
A
N
ARG
137
A
N
ARG
137
A
O
LYS
178
A
O
LYS
178
A
O
TYR
177
A
O
TYR
177
A
N
GLN
170
A
N
GLN
170
A
N
ILE
16
A
N
ILE
16
A
O
THR
146
A
O
THR
146
1
A
SER
76
-173.52
144.04
1
A
ALA
106
-26.64
-48.98
1
A
ASP
110
-92.92
-96.99
1
A
MET
139
-79.37
48.79
protein_rep.param
protein.top
water.param
ligands.top
ligands.param
water.top
73.700
32.2186
15.600
2.3500
0.0000
0.0000
2.3500
0.0000
-4.7000
BULK SOLVENT MODEL USED
0.2490
0.0100
0.2050
2.0500
33.3100
655
13122
5.0000
99.8000
1.000
1.000
RANDOM
274879.0000
0.0000
1
RESTRAINED
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
1HFR
FLAT MODEL
69.3711
0.4000
0.320
0.250
5.000
0.300
0.220
2.0500
33.3100
172
1748
74
0
1502
0.007
1.400
23.600
0.880
1.380
1.500
2.170
2.000
1.960
2.000
2.800
2.500
0.4240
0.0550
0.3070
2.1200
59
1257
1316
10
4.5000
100.0000
2.050
33.310
4DDR
13123
0.070
1.000
1
5.200
1.640
312
95.100
0.244
2.050
2.120
1.800
4018
2454
0.730
1
1.640
93.200
0.205
2.120
2.210
2.200
4056
2463
0.710
1
1.650
93.600
0.173
2.210
2.310
2.700
4055
2464
0.810
1
1.650
93.800
0.139
2.310
2.430
3.200
4063
2445
0.750
1
1.660
93.700
0.121
2.430
2.580
3.900
4081
2463
0.860
1
1.660
94.400
0.109
2.580
2.780
4.500
4158
2496
0.960
1
1.660
3
94.900
0.088
2.780
3.060
5.800
4181
2522
1.140
1
1.660
2
95.200
0.065
3.060
3.500
7.700
4153
2514
1.350
1
1.650
16
96.500
0.051
3.500
4.410
9.500
4258
2587
1.500
1
1.620
67
97.900
0.049
4.410
33.310
10.100
4261
2561
1.240
1
1.580
224
97.500
data scaling
Jim W. Pflugrath
Jim.Pflugrath@Rigaku.com
May 1 2001
http://www.rigaku.com/software/dtrek.html
d*TREK
package
7.1SSI
data reduction
Jim W. Pflugrath
Jim.Pflugrath@Rigaku.com
May 1 2001
http://www.rigaku.com/software/dtrek.html
d*TREK
package
7.1SSI
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns-online.org/
CNS
package
1.2
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
CrystalClear
data reduction
CrystalClear
data scaling
CrystalClear
Human dihydrofolate reductase complexed with NADPH and P218
1
N
N
2
N
N
3
N
N
4
N
N
A
LEU
27
A
LEU
27
HELX_P
A
THR
40
A
THR
40
1
1
14
A
LYS
54
A
LYS
54
HELX_P
A
ILE
60
A
ILE
60
1
2
7
A
PRO
61
A
PRO
61
HELX_P
A
ARG
65
A
ARG
65
5
3
5
A
SER
92
A
SER
92
HELX_P
A
GLU
101
A
GLU
101
1
4
10
A
GLN
102
A
GLN
102
HELX_P
A
ASN
107
A
ASN
107
1
5
6
A
GLY
117
A
GLY
117
HELX_P
A
ASN
126
A
ASN
126
1
6
10
OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
antifolate, NADPH, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR complex
A
ARG
65
A
ARG
65
1
A
PRO
66
A
PRO
66
-0.96
A
GLY
116
A
GLY
116
1
A
GLY
117
A
GLY
117
0.58
DYR_HUMAN
UNP
1
2
P00374
VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELK
EPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLP
EYPGVLSDVQEEKGIKYKFEVYEKND
2
187
4DDR
1
186
P00374
A
1
1
186
8
8
2
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
88
A
PHE
88
A
SER
90
A
SER
90
A
ILE
71
A
ILE
71
A
LEU
75
A
LEU
75
A
GLN
47
A
GLN
47
A
GLY
53
A
GLY
53
A
VAL
109
A
VAL
109
A
ILE
114
A
ILE
114
A
LEU
4
A
LEU
4
A
VAL
10
A
VAL
10
A
HIS
130
A
HIS
130
A
ILE
138
A
ILE
138
A
ILE
175
A
ILE
175
A
ASN
185
A
ASN
185
A
LYS
157
A
LYS
157
A
LEU
158
A
LEU
158
A
PHE
88
A
PHE
88
A
SER
90
A
SER
90
A
ILE
71
A
ILE
71
A
LEU
75
A
LEU
75
A
GLN
47
A
GLN
47
A
GLY
53
A
GLY
53
A
VAL
109
A
VAL
109
A
ILE
114
A
ILE
114
A
LEU
4
A
LEU
4
A
VAL
10
A
VAL
10
A
HIS
130
A
HIS
130
A
ILE
138
A
ILE
138
A
ILE
175
A
ILE
175
A
ASN
185
A
ASN
185
A
GLN
170
A
GLN
170
A
GLU
172
A
GLU
172
A
GLY
15
A
GLY
15
A
GLY
17
A
GLY
17
A
THR
146
A
THR
146
A
PHE
147
A
PHE
147
BINDING SITE FOR RESIDUE NDP A 201
A
NDP
201
Software
33
BINDING SITE FOR RESIDUE MMV A 202
A
MMV
202
Software
16
A
VAL
8
A
VAL
8
33
1_555
A
ALA
9
A
ALA
9
33
1_555
A
ILE
16
A
ILE
16
33
1_555
A
GLY
17
A
GLY
17
33
1_555
A
LYS
18
A
LYS
18
33
1_555
A
GLY
20
A
GLY
20
33
1_555
A
ASP
21
A
ASP
21
33
1_555
A
GLY
53
A
GLY
53
33
1_555
A
LYS
54
A
LYS
54
33
1_555
A
LYS
55
A
LYS
55
33
1_555
A
THR
56
A
THR
56
33
1_555
A
SER
59
A
SER
59
33
1_555
A
LEU
75
A
LEU
75
33
1_555
A
SER
76
A
SER
76
33
1_555
A
ARG
77
A
ARG
77
33
1_555
A
GLU
78
A
GLU
78
33
1_555
A
ARG
91
A
ARG
91
33
1_555
A
SER
92
A
SER
92
33
1_555
A
VAL
115
A
VAL
115
33
1_555
A
GLY
116
A
GLY
116
33
1_555
A
GLY
117
A
GLY
117
33
1_555
A
SER
118
A
SER
118
33
1_555
A
VAL
120
A
VAL
120
33
1_555
A
TYR
121
A
TYR
121
33
1_555
A
THR
146
A
THR
146
33
1_555
A
MMV
202
C
MMV
33
1_555
A
HOH
1001
D
HOH
33
1_555
A
HOH
1004
D
HOH
33
1_555
A
HOH
1013
D
HOH
33
1_555
A
HOH
1057
D
HOH
33
1_555
A
HOH
1063
D
HOH
33
1_555
A
HOH
1077
D
HOH
33
1_555
A
HOH
1137
D
HOH
33
1_555
A
ILE
7
A
ILE
7
16
1_555
A
VAL
8
A
VAL
8
16
1_555
A
ALA
9
A
ALA
9
16
1_555
A
ASP
21
A
ASP
21
16
1_555
A
LEU
22
A
LEU
22
16
1_555
A
GLU
30
A
GLU
30
16
1_555
A
PHE
31
A
PHE
31
16
1_555
A
PHE
34
A
PHE
34
16
1_555
A
SER
59
A
SER
59
16
1_555
A
VAL
115
A
VAL
115
16
1_555
A
TYR
121
A
TYR
121
16
1_555
A
THR
136
A
THR
136
16
1_555
A
NDP
201
B
NDP
16
1_555
A
HOH
1054
D
HOH
16
1_555
A
HOH
1122
D
HOH
16
1_555
A
HOH
1139
D
HOH
16
1_555
146
H 3