0.005827 0.000000 0.000000 0.000000 0.005827 0.000000 0.000000 0.000000 0.005827 0.00000 0.00000 0.00000 Fedorov, A.A. Fedorov, E.V. Desai, B. Gerlt, J.A. Almo, S.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 96 90.00 90.00 90.00 171.610 171.610 171.610 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Ni 2 58.693 NICKEL (II) ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2010-08-09 ADSC QUANTUM 315r MIRRORS SINGLE WAVELENGTH M x-ray 1 1.075 1.0 X29A NSLS 1.075 SYNCHROTRON NSLS BEAMLINE X29A 21952.539 Orotidine 5'-phosphate decarboxylase 2 man polymer 58.693 NICKEL (II) ION 2 syn non-polymer 96.063 SULFATE ION 2 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 18.015 water 295 nat water no no MAANLPLVVALDTEVLKAIDVAKRLKGAVAGFKVGWDLIFEGGISIVGEIARYGNVIVDLKIADVPHVASRVVEKLVNRG ACCVIVHGFLHPSLPRGQHVYVLVKMTAPTIYDEMWEKLLNSVQDVRGFVLPGNQPEVVAQARKRIGCSYRIISPGIGPQ GGRPGAAIEAGADFEIVGRYVLEDPARISQWAQYRPTCFETP MAANLPLVVALDTEVLKAIDVAKRLKGAVAGFKVGWDLIFEGGISIVGEIARYGNVIVDLKIADVPHVASRVVEKLVNRG ACCVIVHGFLHPSLPRGQHVYVLVKMTAPTIYDEMWEKLLNSVQDVRGFVLPGNQPEVVAQARKRIGCSYRIISPGIGPQ GGRPGAAIEAGADFEIVGRYVLEDPARISQWAQYRPTCFETP A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n DSM 2338 / JCM 9278 / V24Sta sample Tneu_0023 444157 Thermoproteus neutrophilus 562 Escherichia coli 1 2.40 48.71 VAPOR DIFFUSION, HANGING DROP 6.5 25% PEG 3350, 0.1M Bis-Tris, 0.2M Lithium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K 293.0 repository Initial release 1 0 2013-01-23 RCSB Y RCSB 2012-01-22 REL REL NI NICKEL (II) ION SO4 SULFATE ION CL CHLORIDE ION HOH water NI 2 2 NI NI 301 A SO4 2 3 SO4 SO4 302 A CL 1 4 CL CL 303 A NI 1 2 NI NI 301 B SO4 1 3 SO4 SO4 302 B HOH 3 5 HOH HOH 401 A HOH 5 5 HOH HOH 402 A HOH 7 5 HOH HOH 403 A HOH 8 5 HOH HOH 404 A HOH 9 5 HOH HOH 405 A HOH 10 5 HOH HOH 406 A HOH 11 5 HOH HOH 407 A HOH 13 5 HOH HOH 408 A HOH 14 5 HOH HOH 409 A HOH 15 5 HOH HOH 410 A HOH 16 5 HOH HOH 411 A HOH 17 5 HOH HOH 412 A HOH 19 5 HOH HOH 413 A HOH 21 5 HOH HOH 414 A HOH 22 5 HOH HOH 415 A HOH 23 5 HOH HOH 416 A HOH 24 5 HOH HOH 417 A HOH 26 5 HOH HOH 418 A HOH 27 5 HOH HOH 419 A HOH 30 5 HOH HOH 420 A HOH 32 5 HOH HOH 421 A HOH 33 5 HOH HOH 422 A HOH 34 5 HOH HOH 423 A HOH 35 5 HOH HOH 424 A HOH 36 5 HOH HOH 425 A HOH 42 5 HOH HOH 426 A HOH 43 5 HOH HOH 427 A HOH 44 5 HOH HOH 428 A HOH 46 5 HOH HOH 429 A HOH 47 5 HOH HOH 430 A HOH 48 5 HOH HOH 431 A HOH 49 5 HOH HOH 432 A HOH 51 5 HOH HOH 433 A HOH 53 5 HOH HOH 434 A HOH 54 5 HOH HOH 435 A HOH 55 5 HOH HOH 436 A HOH 56 5 HOH HOH 437 A HOH 57 5 HOH HOH 438 A HOH 65 5 HOH HOH 439 A HOH 69 5 HOH HOH 440 A HOH 71 5 HOH HOH 441 A HOH 74 5 HOH HOH 442 A HOH 75 5 HOH HOH 443 A HOH 76 5 HOH HOH 444 A HOH 79 5 HOH HOH 445 A HOH 82 5 HOH HOH 446 A HOH 83 5 HOH HOH 447 A HOH 87 5 HOH HOH 448 A HOH 88 5 HOH HOH 449 A HOH 89 5 HOH HOH 450 A HOH 91 5 HOH HOH 451 A HOH 92 5 HOH HOH 452 A HOH 93 5 HOH HOH 453 A HOH 95 5 HOH HOH 454 A HOH 96 5 HOH HOH 455 A HOH 98 5 HOH HOH 456 A HOH 100 5 HOH HOH 457 A HOH 102 5 HOH HOH 458 A HOH 104 5 HOH HOH 459 A HOH 106 5 HOH HOH 460 A HOH 107 5 HOH HOH 461 A HOH 109 5 HOH HOH 462 A HOH 110 5 HOH HOH 463 A HOH 113 5 HOH HOH 464 A HOH 115 5 HOH HOH 465 A HOH 116 5 HOH HOH 466 A HOH 120 5 HOH HOH 467 A HOH 122 5 HOH HOH 468 A HOH 123 5 HOH HOH 469 A HOH 124 5 HOH HOH 470 A HOH 126 5 HOH HOH 471 A HOH 127 5 HOH HOH 472 A HOH 129 5 HOH HOH 473 A HOH 130 5 HOH HOH 474 A HOH 131 5 HOH HOH 475 A HOH 134 5 HOH HOH 476 A HOH 135 5 HOH HOH 477 A HOH 138 5 HOH HOH 478 A HOH 139 5 HOH HOH 479 A HOH 140 5 HOH HOH 480 A HOH 141 5 HOH HOH 481 A HOH 143 5 HOH HOH 482 A HOH 145 5 HOH HOH 483 A HOH 147 5 HOH HOH 484 A HOH 150 5 HOH HOH 485 A HOH 152 5 HOH HOH 486 A HOH 155 5 HOH HOH 487 A HOH 156 5 HOH HOH 488 A HOH 161 5 HOH HOH 489 A HOH 165 5 HOH HOH 490 A HOH 167 5 HOH HOH 491 A HOH 168 5 HOH HOH 492 A HOH 173 5 HOH HOH 493 A HOH 174 5 HOH HOH 494 A HOH 175 5 HOH HOH 495 A HOH 179 5 HOH HOH 496 A HOH 180 5 HOH HOH 497 A HOH 181 5 HOH HOH 498 A HOH 182 5 HOH HOH 499 A HOH 186 5 HOH HOH 500 A HOH 188 5 HOH HOH 501 A HOH 189 5 HOH HOH 502 A HOH 192 5 HOH HOH 503 A HOH 193 5 HOH HOH 504 A HOH 195 5 HOH HOH 505 A HOH 196 5 HOH HOH 506 A HOH 198 5 HOH HOH 507 A HOH 200 5 HOH HOH 508 A HOH 201 5 HOH HOH 509 A HOH 202 5 HOH HOH 510 A HOH 203 5 HOH HOH 511 A HOH 204 5 HOH HOH 512 A HOH 205 5 HOH HOH 513 A HOH 206 5 HOH HOH 514 A HOH 207 5 HOH HOH 515 A HOH 210 5 HOH HOH 516 A HOH 212 5 HOH HOH 517 A HOH 214 5 HOH HOH 518 A HOH 216 5 HOH HOH 519 A HOH 217 5 HOH HOH 520 A HOH 218 5 HOH HOH 521 A HOH 222 5 HOH HOH 522 A HOH 223 5 HOH HOH 523 A HOH 226 5 HOH HOH 524 A HOH 230 5 HOH HOH 525 A HOH 231 5 HOH HOH 526 A HOH 232 5 HOH HOH 527 A HOH 233 5 HOH HOH 528 A HOH 234 5 HOH HOH 529 A HOH 235 5 HOH HOH 530 A HOH 237 5 HOH HOH 531 A HOH 238 5 HOH HOH 532 A HOH 240 5 HOH HOH 533 A HOH 242 5 HOH HOH 534 A HOH 243 5 HOH HOH 535 A HOH 244 5 HOH HOH 536 A HOH 245 5 HOH HOH 537 A HOH 247 5 HOH HOH 538 A HOH 249 5 HOH HOH 539 A HOH 250 5 HOH HOH 540 A HOH 251 5 HOH HOH 541 A HOH 253 5 HOH HOH 542 A HOH 254 5 HOH HOH 543 A HOH 255 5 HOH HOH 544 A HOH 258 5 HOH HOH 545 A HOH 259 5 HOH HOH 546 A HOH 260 5 HOH HOH 547 A HOH 261 5 HOH HOH 548 A HOH 262 5 HOH HOH 549 A HOH 263 5 HOH HOH 550 A HOH 264 5 HOH HOH 551 A HOH 271 5 HOH HOH 552 A HOH 273 5 HOH HOH 553 A HOH 276 5 HOH HOH 554 A HOH 278 5 HOH HOH 555 A HOH 283 5 HOH HOH 556 A HOH 289 5 HOH HOH 557 A HOH 301 5 HOH HOH 558 A HOH 303 5 HOH HOH 559 A HOH 304 5 HOH HOH 560 A HOH 306 5 HOH HOH 561 A HOH 311 5 HOH HOH 562 A HOH 313 5 HOH HOH 563 A HOH 314 5 HOH HOH 564 A HOH 324 5 HOH HOH 565 A HOH 325 5 HOH HOH 566 A HOH 327 5 HOH HOH 567 A HOH 328 5 HOH HOH 568 A HOH 332 5 HOH HOH 569 A HOH 335 5 HOH HOH 570 A HOH 2 5 HOH HOH 401 B HOH 4 5 HOH HOH 402 B HOH 6 5 HOH HOH 403 B HOH 12 5 HOH HOH 404 B HOH 18 5 HOH HOH 405 B HOH 25 5 HOH HOH 406 B HOH 28 5 HOH HOH 407 B HOH 29 5 HOH HOH 408 B HOH 31 5 HOH HOH 409 B HOH 37 5 HOH HOH 410 B HOH 38 5 HOH HOH 411 B HOH 39 5 HOH HOH 412 B HOH 40 5 HOH HOH 413 B HOH 41 5 HOH HOH 414 B HOH 45 5 HOH HOH 415 B HOH 50 5 HOH HOH 416 B HOH 52 5 HOH HOH 417 B HOH 58 5 HOH HOH 418 B HOH 59 5 HOH HOH 419 B HOH 60 5 HOH HOH 420 B HOH 61 5 HOH HOH 421 B HOH 62 5 HOH HOH 422 B HOH 63 5 HOH HOH 423 B HOH 64 5 HOH HOH 424 B HOH 66 5 HOH HOH 425 B HOH 67 5 HOH HOH 426 B HOH 68 5 HOH HOH 427 B HOH 70 5 HOH HOH 428 B HOH 72 5 HOH HOH 429 B HOH 73 5 HOH HOH 430 B HOH 77 5 HOH HOH 431 B HOH 78 5 HOH HOH 432 B HOH 80 5 HOH HOH 433 B HOH 81 5 HOH HOH 434 B HOH 84 5 HOH HOH 435 B HOH 85 5 HOH HOH 436 B HOH 94 5 HOH HOH 437 B HOH 97 5 HOH HOH 438 B HOH 99 5 HOH HOH 439 B HOH 101 5 HOH HOH 440 B HOH 103 5 HOH HOH 441 B HOH 105 5 HOH HOH 442 B HOH 111 5 HOH HOH 443 B HOH 112 5 HOH HOH 444 B HOH 114 5 HOH HOH 445 B HOH 117 5 HOH HOH 446 B HOH 118 5 HOH HOH 447 B HOH 119 5 HOH HOH 448 B HOH 121 5 HOH HOH 449 B HOH 125 5 HOH HOH 450 B HOH 128 5 HOH HOH 451 B HOH 132 5 HOH HOH 452 B HOH 133 5 HOH HOH 453 B HOH 136 5 HOH HOH 454 B HOH 137 5 HOH HOH 455 B HOH 142 5 HOH HOH 456 B HOH 144 5 HOH HOH 457 B HOH 146 5 HOH HOH 458 B HOH 148 5 HOH HOH 459 B HOH 149 5 HOH HOH 460 B HOH 151 5 HOH HOH 461 B HOH 153 5 HOH HOH 462 B HOH 154 5 HOH HOH 463 B HOH 157 5 HOH HOH 464 B HOH 158 5 HOH HOH 465 B HOH 159 5 HOH HOH 466 B HOH 160 5 HOH HOH 467 B HOH 162 5 HOH HOH 468 B HOH 164 5 HOH HOH 469 B HOH 166 5 HOH HOH 470 B HOH 169 5 HOH HOH 471 B HOH 170 5 HOH HOH 472 B HOH 171 5 HOH HOH 473 B HOH 172 5 HOH HOH 474 B HOH 176 5 HOH HOH 475 B HOH 177 5 HOH HOH 476 B HOH 178 5 HOH HOH 477 B HOH 183 5 HOH HOH 478 B HOH 184 5 HOH HOH 479 B HOH 185 5 HOH HOH 480 B HOH 187 5 HOH HOH 481 B HOH 190 5 HOH HOH 482 B HOH 191 5 HOH HOH 483 B HOH 194 5 HOH HOH 484 B HOH 197 5 HOH HOH 485 B HOH 199 5 HOH HOH 486 B HOH 208 5 HOH HOH 487 B HOH 209 5 HOH HOH 488 B HOH 211 5 HOH HOH 489 B HOH 213 5 HOH HOH 490 B HOH 215 5 HOH HOH 491 B HOH 219 5 HOH HOH 492 B HOH 220 5 HOH HOH 493 B HOH 221 5 HOH HOH 494 B HOH 224 5 HOH HOH 495 B HOH 225 5 HOH HOH 496 B HOH 227 5 HOH HOH 497 B HOH 228 5 HOH HOH 498 B HOH 229 5 HOH HOH 499 B HOH 236 5 HOH HOH 500 B HOH 239 5 HOH HOH 501 B HOH 241 5 HOH HOH 502 B HOH 246 5 HOH HOH 503 B HOH 248 5 HOH HOH 504 B HOH 252 5 HOH HOH 505 B HOH 256 5 HOH HOH 506 B HOH 257 5 HOH HOH 507 B HOH 272 5 HOH HOH 508 B HOH 274 5 HOH HOH 509 B HOH 275 5 HOH HOH 510 B HOH 277 5 HOH HOH 511 B HOH 286 5 HOH HOH 512 B HOH 287 5 HOH HOH 513 B HOH 288 5 HOH HOH 514 B HOH 290 5 HOH HOH 515 B HOH 291 5 HOH HOH 516 B HOH 305 5 HOH HOH 517 B HOH 307 5 HOH HOH 518 B HOH 308 5 HOH HOH 519 B HOH 309 5 HOH HOH 520 B HOH 310 5 HOH HOH 521 B HOH 326 5 HOH HOH 522 B HOH 329 5 HOH HOH 523 B HOH 330 5 HOH HOH 524 B HOH 333 5 HOH HOH 525 B n 1 1 A n 2 2 A n 3 3 A ASN 4 n 4 ASN 4 A LEU 5 n 5 LEU 5 A PRO 6 n 6 PRO 6 A LEU 7 n 7 LEU 7 A VAL 8 n 8 VAL 8 A VAL 9 n 9 VAL 9 A ALA 10 n 10 ALA 10 A LEU 11 n 11 LEU 11 A ASP 12 n 12 ASP 12 A THR 13 n 13 THR 13 A GLU 14 n 14 GLU 14 A VAL 15 n 15 VAL 15 A LEU 16 n 16 LEU 16 A LYS 17 n 17 LYS 17 A ALA 18 n 18 ALA 18 A ILE 19 n 19 ILE 19 A ASP 20 n 20 ASP 20 A VAL 21 n 21 VAL 21 A ALA 22 n 22 ALA 22 A LYS 23 n 23 LYS 23 A ARG 24 n 24 ARG 24 A LEU 25 n 25 LEU 25 A LYS 26 n 26 LYS 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A VAL 29 n 29 VAL 29 A ALA 30 n 30 ALA 30 A GLY 31 n 31 GLY 31 A PHE 32 n 32 PHE 32 A LYS 33 n 33 LYS 33 A VAL 34 n 34 VAL 34 A GLY 35 n 35 GLY 35 A TRP 36 n 36 TRP 36 A ASP 37 n 37 ASP 37 A LEU 38 n 38 LEU 38 A ILE 39 n 39 ILE 39 A PHE 40 n 40 PHE 40 A GLU 41 n 41 GLU 41 A GLY 42 n 42 GLY 42 A GLY 43 n 43 GLY 43 A ILE 44 n 44 ILE 44 A SER 45 n 45 SER 45 A ILE 46 n 46 ILE 46 A VAL 47 n 47 VAL 47 A GLY 48 n 48 GLY 48 A GLU 49 n 49 GLU 49 A ILE 50 n 50 ILE 50 A ALA 51 n 51 ALA 51 A ARG 52 n 52 ARG 52 A TYR 53 n 53 TYR 53 A GLY 54 n 54 GLY 54 A ASN 55 n 55 ASN 55 A VAL 56 n 56 VAL 56 A ILE 57 n 57 ILE 57 A VAL 58 n 58 VAL 58 A ASP 59 n 59 ASP 59 A LEU 60 n 60 LEU 60 A LYS 61 n 61 LYS 61 A ILE 62 n 62 ILE 62 A ALA 63 n 63 ALA 63 A ASP 64 n 64 ASP 64 A VAL 65 n 65 VAL 65 A PRO 66 n 66 PRO 66 A HIS 67 n 67 HIS 67 A VAL 68 n 68 VAL 68 A ALA 69 n 69 ALA 69 A SER 70 n 70 SER 70 A ARG 71 n 71 ARG 71 A VAL 72 n 72 VAL 72 A VAL 73 n 73 VAL 73 A GLU 74 n 74 GLU 74 A LYS 75 n 75 LYS 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A ASN 78 n 78 ASN 78 A ARG 79 n 79 ARG 79 A GLY 80 n 80 GLY 80 A ALA 81 n 81 ALA 81 A CYS 82 n 82 CYS 82 A CYS 83 n 83 CYS 83 A VAL 84 n 84 VAL 84 A ILE 85 n 85 ILE 85 A VAL 86 n 86 VAL 86 A HIS 87 n 87 HIS 87 A GLY 88 n 88 GLY 88 A PHE 89 n 89 PHE 89 A LEU 90 n 90 LEU 90 A HIS 91 n 91 HIS 91 A PRO 92 n 92 PRO 92 A SER 93 n 93 SER 93 A LEU 94 n 94 LEU 94 A PRO 95 n 95 PRO 95 A ARG 96 n 96 ARG 96 A GLY 97 n 97 GLY 97 A GLN 98 n 98 GLN 98 A HIS 99 n 99 HIS 99 A VAL 100 n 100 VAL 100 A TYR 101 n 101 TYR 101 A VAL 102 n 102 VAL 102 A LEU 103 n 103 LEU 103 A VAL 104 n 104 VAL 104 A LYS 105 n 105 LYS 105 A MET 106 n 106 MET 106 A THR 107 n 107 THR 107 A ALA 108 n 108 ALA 108 A PRO 109 n 109 PRO 109 A THR 110 n 110 THR 110 A ILE 111 n 111 ILE 111 A TYR 112 n 112 TYR 112 A ASP 113 n 113 ASP 113 A GLU 114 n 114 GLU 114 A MET 115 n 115 MET 115 A TRP 116 n 116 TRP 116 A GLU 117 n 117 GLU 117 A LYS 118 n 118 LYS 118 A LEU 119 n 119 LEU 119 A LEU 120 n 120 LEU 120 A ASN 121 n 121 ASN 121 A SER 122 n 122 SER 122 A VAL 123 n 123 VAL 123 A GLN 124 n 124 GLN 124 A ASP 125 n 125 ASP 125 A VAL 126 n 126 VAL 126 A ARG 127 n 127 ARG 127 A GLY 128 n 128 GLY 128 A PHE 129 n 129 PHE 129 A VAL 130 n 130 VAL 130 A LEU 131 n 131 LEU 131 A PRO 132 n 132 PRO 132 A GLY 133 n 133 GLY 133 A ASN 134 n 134 ASN 134 A GLN 135 n 135 GLN 135 A PRO 136 n 136 PRO 136 A GLU 137 n 137 GLU 137 A VAL 138 n 138 VAL 138 A VAL 139 n 139 VAL 139 A ALA 140 n 140 ALA 140 A GLN 141 n 141 GLN 141 A ALA 142 n 142 ALA 142 A ARG 143 n 143 ARG 143 A LYS 144 n 144 LYS 144 A ARG 145 n 145 ARG 145 A ILE 146 n 146 ILE 146 A GLY 147 n 147 GLY 147 A CYS 148 n 148 CYS 148 A SER 149 n 149 SER 149 A TYR 150 n 150 TYR 150 A ARG 151 n 151 ARG 151 A ILE 152 n 152 ILE 152 A ILE 153 n 153 ILE 153 A SER 154 n 154 SER 154 A PRO 155 n 155 PRO 155 A GLY 156 n 156 GLY 156 A ILE 157 n 157 ILE 157 A GLY 158 n 158 GLY 158 A PRO 159 n 159 PRO 159 A GLN 160 n 160 GLN 160 A GLY 161 n 161 GLY 161 A GLY 162 n 162 GLY 162 A ARG 163 n 163 ARG 163 A PRO 164 n 164 PRO 164 A GLY 165 n 165 GLY 165 A ALA 166 n 166 ALA 166 A ALA 167 n 167 ALA 167 A ILE 168 n 168 ILE 168 A GLU 169 n 169 GLU 169 A ALA 170 n 170 ALA 170 A GLY 171 n 171 GLY 171 A ALA 172 n 172 ALA 172 A ASP 173 n 173 ASP 173 A PHE 174 n 174 PHE 174 A GLU 175 n 175 GLU 175 A ILE 176 n 176 ILE 176 A VAL 177 n 177 VAL 177 A GLY 178 n 178 GLY 178 A ARG 179 n 179 ARG 179 A TYR 180 n 180 TYR 180 A VAL 181 n 181 VAL 181 A LEU 182 n 182 LEU 182 A GLU 183 n 183 GLU 183 A ASP 184 n 184 ASP 184 A PRO 185 n 185 PRO 185 A ALA 186 n 186 ALA 186 A ARG 187 n 187 ARG 187 A ILE 188 n 188 ILE 188 A SER 189 n 189 SER 189 A GLN 190 n 190 GLN 190 A TRP 191 n 191 TRP 191 A ALA 192 n 192 ALA 192 A GLN 193 n 193 GLN 193 A TYR 194 n 194 TYR 194 A ARG 195 n 195 ARG 195 A PRO 196 n 196 PRO 196 A THR 197 n 197 THR 197 A CYS 198 n 198 CYS 198 A PHE 199 n 199 PHE 199 A GLU 200 n 200 GLU 200 A THR 201 n 201 THR 201 A PRO 202 n 202 PRO 202 A n 1 1 B n 2 2 B n 3 3 B ASN 4 n 4 ASN 4 B LEU 5 n 5 LEU 5 B PRO 6 n 6 PRO 6 B LEU 7 n 7 LEU 7 B VAL 8 n 8 VAL 8 B VAL 9 n 9 VAL 9 B ALA 10 n 10 ALA 10 B LEU 11 n 11 LEU 11 B ASP 12 n 12 ASP 12 B THR 13 n 13 THR 13 B GLU 14 n 14 GLU 14 B VAL 15 n 15 VAL 15 B LEU 16 n 16 LEU 16 B LYS 17 n 17 LYS 17 B ALA 18 n 18 ALA 18 B ILE 19 n 19 ILE 19 B ASP 20 n 20 ASP 20 B VAL 21 n 21 VAL 21 B ALA 22 n 22 ALA 22 B LYS 23 n 23 LYS 23 B ARG 24 n 24 ARG 24 B LEU 25 n 25 LEU 25 B LYS 26 n 26 LYS 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B VAL 29 n 29 VAL 29 B ALA 30 n 30 ALA 30 B GLY 31 n 31 GLY 31 B PHE 32 n 32 PHE 32 B LYS 33 n 33 LYS 33 B VAL 34 n 34 VAL 34 B GLY 35 n 35 GLY 35 B TRP 36 n 36 TRP 36 B ASP 37 n 37 ASP 37 B LEU 38 n 38 LEU 38 B ILE 39 n 39 ILE 39 B PHE 40 n 40 PHE 40 B GLU 41 n 41 GLU 41 B GLY 42 n 42 GLY 42 B GLY 43 n 43 GLY 43 B ILE 44 n 44 ILE 44 B SER 45 n 45 SER 45 B ILE 46 n 46 ILE 46 B VAL 47 n 47 VAL 47 B GLY 48 n 48 GLY 48 B GLU 49 n 49 GLU 49 B ILE 50 n 50 ILE 50 B ALA 51 n 51 ALA 51 B ARG 52 n 52 ARG 52 B TYR 53 n 53 TYR 53 B GLY 54 n 54 GLY 54 B ASN 55 n 55 ASN 55 B VAL 56 n 56 VAL 56 B ILE 57 n 57 ILE 57 B VAL 58 n 58 VAL 58 B ASP 59 n 59 ASP 59 B LEU 60 n 60 LEU 60 B LYS 61 n 61 LYS 61 B ILE 62 n 62 ILE 62 B ALA 63 n 63 ALA 63 B ASP 64 n 64 ASP 64 B VAL 65 n 65 VAL 65 B PRO 66 n 66 PRO 66 B HIS 67 n 67 HIS 67 B VAL 68 n 68 VAL 68 B ALA 69 n 69 ALA 69 B SER 70 n 70 SER 70 B ARG 71 n 71 ARG 71 B VAL 72 n 72 VAL 72 B VAL 73 n 73 VAL 73 B GLU 74 n 74 GLU 74 B LYS 75 n 75 LYS 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B ASN 78 n 78 ASN 78 B ARG 79 n 79 ARG 79 B GLY 80 n 80 GLY 80 B ALA 81 n 81 ALA 81 B CYS 82 n 82 CYS 82 B CYS 83 n 83 CYS 83 B VAL 84 n 84 VAL 84 B ILE 85 n 85 ILE 85 B VAL 86 n 86 VAL 86 B HIS 87 n 87 HIS 87 B GLY 88 n 88 GLY 88 B PHE 89 n 89 PHE 89 B LEU 90 n 90 LEU 90 B HIS 91 n 91 HIS 91 B PRO 92 n 92 PRO 92 B SER 93 n 93 SER 93 B LEU 94 n 94 LEU 94 B PRO 95 n 95 PRO 95 B ARG 96 n 96 ARG 96 B GLY 97 n 97 GLY 97 B GLN 98 n 98 GLN 98 B HIS 99 n 99 HIS 99 B VAL 100 n 100 VAL 100 B TYR 101 n 101 TYR 101 B VAL 102 n 102 VAL 102 B LEU 103 n 103 LEU 103 B VAL 104 n 104 VAL 104 B LYS 105 n 105 LYS 105 B MET 106 n 106 MET 106 B THR 107 n 107 THR 107 B ALA 108 n 108 ALA 108 B PRO 109 n 109 PRO 109 B THR 110 n 110 THR 110 B ILE 111 n 111 ILE 111 B TYR 112 n 112 TYR 112 B ASP 113 n 113 ASP 113 B GLU 114 n 114 GLU 114 B MET 115 n 115 MET 115 B TRP 116 n 116 TRP 116 B GLU 117 n 117 GLU 117 B LYS 118 n 118 LYS 118 B LEU 119 n 119 LEU 119 B LEU 120 n 120 LEU 120 B ASN 121 n 121 ASN 121 B SER 122 n 122 SER 122 B VAL 123 n 123 VAL 123 B GLN 124 n 124 GLN 124 B ASP 125 n 125 ASP 125 B VAL 126 n 126 VAL 126 B ARG 127 n 127 ARG 127 B GLY 128 n 128 GLY 128 B PHE 129 n 129 PHE 129 B VAL 130 n 130 VAL 130 B LEU 131 n 131 LEU 131 B PRO 132 n 132 PRO 132 B GLY 133 n 133 GLY 133 B ASN 134 n 134 ASN 134 B GLN 135 n 135 GLN 135 B PRO 136 n 136 PRO 136 B GLU 137 n 137 GLU 137 B VAL 138 n 138 VAL 138 B VAL 139 n 139 VAL 139 B ALA 140 n 140 ALA 140 B GLN 141 n 141 GLN 141 B ALA 142 n 142 ALA 142 B ARG 143 n 143 ARG 143 B LYS 144 n 144 LYS 144 B ARG 145 n 145 ARG 145 B ILE 146 n 146 ILE 146 B GLY 147 n 147 GLY 147 B CYS 148 n 148 CYS 148 B SER 149 n 149 SER 149 B TYR 150 n 150 TYR 150 B ARG 151 n 151 ARG 151 B ILE 152 n 152 ILE 152 B ILE 153 n 153 ILE 153 B SER 154 n 154 SER 154 B PRO 155 n 155 PRO 155 B GLY 156 n 156 GLY 156 B ILE 157 n 157 ILE 157 B GLY 158 n 158 GLY 158 B PRO 159 n 159 PRO 159 B GLN 160 n 160 GLN 160 B GLY 161 n 161 GLY 161 B GLY 162 n 162 GLY 162 B ARG 163 n 163 ARG 163 B PRO 164 n 164 PRO 164 B GLY 165 n 165 GLY 165 B ALA 166 n 166 ALA 166 B ALA 167 n 167 ALA 167 B ILE 168 n 168 ILE 168 B GLU 169 n 169 GLU 169 B ALA 170 n 170 ALA 170 B GLY 171 n 171 GLY 171 B ALA 172 n 172 ALA 172 B ASP 173 n 173 ASP 173 B PHE 174 n 174 PHE 174 B GLU 175 n 175 GLU 175 B ILE 176 n 176 ILE 176 B VAL 177 n 177 VAL 177 B GLY 178 n 178 GLY 178 B ARG 179 n 179 ARG 179 B TYR 180 n 180 TYR 180 B VAL 181 n 181 VAL 181 B LEU 182 n 182 LEU 182 B GLU 183 n 183 GLU 183 B ASP 184 n 184 ASP 184 B PRO 185 n 185 PRO 185 B ALA 186 n 186 ALA 186 B ARG 187 n 187 ARG 187 B ILE 188 n 188 ILE 188 B SER 189 n 189 SER 189 B GLN 190 n 190 GLN 190 B TRP 191 n 191 TRP 191 B ALA 192 n 192 ALA 192 B GLN 193 n 193 GLN 193 B TYR 194 n 194 TYR 194 B ARG 195 n 195 ARG 195 B PRO 196 n 196 PRO 196 B THR 197 n 197 THR 197 B CYS 198 n 198 CYS 198 B PHE 199 n 199 PHE 199 B GLU 200 n 200 GLU 200 B THR 201 n 201 THR 201 B PRO 202 n 202 PRO 202 B author_and_software_defined_assembly PISA 2 dimeric 3530 -72 15640 A CYS 83 A SG CYS 83 1_555 A NI 301 C NI NI 1_555 A CYS 82 B A SG CYS 82 1_555 95.5 B CYS 83 B SG CYS 83 1_555 B NI 301 F NI NI 1_555 B CYS 82 B B SG CYS 82 1_555 93.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 9 A N VAL 9 A O GLY 31 A O GLY 31 A N VAL 34 A N VAL 34 A O ASP 59 A O ASP 59 A N ILE 62 A N ILE 62 A O HIS 87 A O HIS 87 A N VAL 86 A N VAL 86 A O LEU 103 A O LEU 103 A N VAL 102 A N VAL 102 A O GLY 128 A O GLY 128 A N PHE 129 A N PHE 129 A O ARG 151 A O ARG 151 A N SER 154 A N SER 154 A O ILE 176 A O ILE 176 A O GLU 175 A O GLU 175 A N VAL 8 A N VAL 8 B N VAL 9 B N VAL 9 B O GLY 31 B O GLY 31 B N VAL 34 B N VAL 34 B O ASP 59 B O ASP 59 B N ILE 62 B N ILE 62 B O HIS 87 B O HIS 87 B N VAL 86 B N VAL 86 B O LEU 103 B O LEU 103 B N VAL 102 B N VAL 102 B O GLY 128 B O GLY 128 B N PHE 129 B N PHE 129 B O ARG 151 B O ARG 151 B N SER 154 B N SER 154 B O ILE 176 B O ILE 176 B O GLU 175 B O GLU 175 B N VAL 8 B N VAL 8 1 A HOH 415 H HOH 1 B HOH 438 I HOH 1 B HOH 490 I HOH 1 B HOH 511 I HOH 1 A MET 1 A MET 1 1 Y 1 A ALA 2 A ALA 2 1 Y 1 A ALA 3 A ALA 3 1 Y 1 B MET 1 B MET 1 1 Y 1 B ALA 2 B ALA 2 1 Y 1 B ALA 3 B ALA 3 1 Y 1 A ALA 63 -150.43 68.61 1 A PRO 155 -83.50 -157.08 1 A GLN 160 B 85.06 4.67 1 A ASP 184 -160.62 91.06 1 B ALA 63 -149.85 53.57 1 B MET 115 -149.17 10.02 0.0000 0.0000 0.0000 0.0000 0.0000 -0.0000 0.2382 0.2050 0.2067 0.2067 1.500 38.373 3448 67964 67964 5.07 99.27 0.22 RANDOM 1 0.0 MOLECULAR REPLACEMENT 24.13 1.06 1.30 ML FLAT BULK SOLVENT MODEL 36.331 0.368 1.500 38.373 295 3362 13 0 3054 0.007 3240 1.105 4425 11.731 1194 0.070 497 0.006 580 0.2996 0.2907 1.5206 137 2582 100.00 0.3002 0.2915 1.5423 130 2554 100.00 0.3290 0.2917 1.5653 150 2563 100.00 0.3306 0.2700 1.5898 131 2570 100.00 0.3014 0.2517 1.6159 123 2579 100.00 0.3031 0.2649 1.6437 136 2544 100.00 0.3241 0.2584 1.6736 149 2552 100.00 0.2601 0.2484 1.7058 127 2590 100.00 0.3133 0.2592 1.7406 152 2540 100.00 0.3215 0.2468 1.7785 150 2560 100.00 0.3246 0.2416 1.8199 134 2583 100.00 0.3101 0.2428 1.8654 138 2564 100.00 0.2652 0.2384 1.9158 131 2566 99.00 0.2181 0.2135 1.9722 146 2562 99.00 0.2393 0.2051 2.0358 127 2585 99.00 0.2479 0.2078 2.1086 127 2548 99.00 0.2521 0.2127 2.1930 153 2538 99.00 0.2304 0.2037 2.2928 144 2559 98.00 0.2324 0.1988 2.4137 156 2514 98.00 0.2489 0.2028 2.5648 136 2575 98.00 0.2413 0.2091 2.7628 119 2578 98.00 0.2470 0.2134 3.0408 141 2593 98.00 0.2157 0.1984 3.4805 123 2632 99.00 0.1845 0.1709 4.3841 141 2677 99.00 0.2249 0.1813 38.3857 147 2808 99.00 1.5 38.373 4DF0 67964 67964 0.0 0.0 1 99.27 data collection CBASS model building PHENIX refinement PHENIX (phenix.refine: 1.6.4_486) data reduction HKL-2000 data scaling HKL-3000 phasing PHENIX Orotidine 5'-phosphate decarboxylase Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus 1 N N 1 N N 2 N N 3 N N 4 N N 2 N N 3 N N 5 N N 5 N N A GLU 14 A GLU 14 HELX_P A LYS 26 A LYS 26 1 1 13 A GLY 35 A GLY 35 HELX_P A GLY 43 A GLY 43 1 2 9 A ILE 44 A ILE 44 HELX_P A ARG 52 A ARG 52 1 3 9 A VAL 65 A VAL 65 HELX_P A ARG 79 A ARG 79 1 4 15 A PHE 89 A PHE 89 HELX_P A HIS 91 A HIS 91 5 5 3 A THR 110 A THR 110 HELX_P A GLU 114 A GLU 114 5 6 5 A MET 115 A MET 115 HELX_P A VAL 123 A VAL 123 1 7 9 A GLN 135 A GLN 135 HELX_P A GLY 147 A GLY 147 1 8 13 A CYS 148 A CYS 148 HELX_P A TYR 150 A TYR 150 5 9 3 A GLY 165 A GLY 165 HELX_P A GLY 171 A GLY 171 1 10 7 A GLY 178 A GLY 178 HELX_P A GLU 183 A GLU 183 1 11 6 A ASP 184 A ASP 184 HELX_P A ALA 192 A ALA 192 5 12 9 B GLU 14 B GLU 14 HELX_P B LYS 26 B LYS 26 1 13 13 B TRP 36 B TRP 36 HELX_P B GLY 43 B GLY 43 1 14 8 B ILE 44 B ILE 44 HELX_P B ARG 52 B ARG 52 1 15 9 B VAL 65 B VAL 65 HELX_P B ARG 79 B ARG 79 1 16 15 B PHE 89 B PHE 89 HELX_P B HIS 91 B HIS 91 5 17 3 B THR 110 B THR 110 HELX_P B GLU 114 B GLU 114 5 18 5 B MET 115 B MET 115 HELX_P B VAL 123 B VAL 123 1 19 9 B GLN 135 B GLN 135 HELX_P B GLY 147 B GLY 147 1 20 13 B GLY 165 B GLY 165 HELX_P B GLY 171 B GLY 171 1 21 7 B GLY 178 B GLY 178 HELX_P B ASP 184 B ASP 184 1 22 7 B PRO 185 B PRO 185 HELX_P B ALA 192 B ALA 192 5 23 8 disulf 2.040 A CYS 148 A SG CYS 148 1_555 A CYS 198 A SG CYS 198 1_555 disulf 2.033 B CYS 148 B SG CYS 148 1_555 B CYS 198 B SG CYS 198 1_555 metalc 2.176 A CYS 83 A SG CYS 83 1_555 A NI 301 C NI NI 1_555 metalc 2.203 B CYS 83 B SG CYS 83 1_555 B NI 301 F NI NI 1_555 metalc 2.472 B A CYS 82 A SG CYS 82 1_555 A NI 301 C NI NI 1_555 metalc 2.526 B B CYS 82 B SG CYS 82 1_555 B NI 301 F NI NI 1_555 LYASE TIM barrel, orotidine 5'-monophosphate decarboxylase, LYASE A HIS 91 A HIS 91 1 A PRO 92 A PRO 92 6.21 B HIS 91 B HIS 91 1 B PRO 92 B PRO 92 9.88 B1Y9Q9_THENV UNP 1 1 B1Y9Q9 MAANLPLVVALDTEVLKAIDVAKRLKGAVAGFKVGWDLIFEGGISIVGEIARYGNVIVDLKIADVPHVASRVVEKLVNRG ACCVIVHGFLHPSLPRGQHVYVLVKMTAPTIYDEMWEKLLNSVQDVRGFVLPGNQPEVVAQARKRIGCSYRIISPGIGPQ GGRPGAAIEAGADFEIVGRYVLEDPARISQWAQYRPTCFETP 1 202 4DF0 1 202 B1Y9Q9 A 1 1 202 1 202 4DF0 1 202 B1Y9Q9 B 1 1 202 9 9 parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel A LEU 5 A LEU 5 A ALA 10 A ALA 10 A VAL 29 A VAL 29 A VAL 34 A VAL 34 A VAL 56 A VAL 56 A ILE 62 A ILE 62 A CYS 83 A CYS 83 A HIS 87 A HIS 87 A GLY 97 A GLY 97 A LEU 103 A LEU 103 A VAL 126 A VAL 126 A VAL 130 A VAL 130 A ARG 151 A ARG 151 A SER 154 A SER 154 A PHE 174 A PHE 174 A VAL 177 A VAL 177 A LEU 5 A LEU 5 A ALA 10 A ALA 10 B LEU 7 B LEU 7 B ALA 10 B ALA 10 B GLY 31 B GLY 31 B GLY 35 B GLY 35 B VAL 56 B VAL 56 B ILE 62 B ILE 62 B CYS 83 B CYS 83 B HIS 87 B HIS 87 B GLY 97 B GLY 97 B LEU 103 B LEU 103 B VAL 126 B VAL 126 B VAL 130 B VAL 130 B ARG 151 B ARG 151 B SER 154 B SER 154 B PHE 174 B PHE 174 B VAL 177 B VAL 177 B LEU 7 B LEU 7 B ALA 10 B ALA 10 BINDING SITE FOR RESIDUE NI A 301 Software 4 BINDING SITE FOR RESIDUE SO4 A 302 Software 5 BINDING SITE FOR RESIDUE CL A 303 Software 2 BINDING SITE FOR RESIDUE NI B 301 Software 4 BINDING SITE FOR RESIDUE SO4 B 302 Software 3 A CYS 82 A CYS 82 4 1_555 A CYS 83 A CYS 83 4 1_555 A ARG 127 A ARG 127 4 1_555 A PRO 202 A PRO 202 4 1_555 A ARG 179 A ARG 179 5 1_555 A HOH 421 H HOH 5 1_555 A HOH 431 H HOH 5 1_555 A HOH 503 H HOH 5 1_555 A HOH 555 H HOH 5 1_555 A MET 106 A MET 106 2 1_555 A THR 107 A THR 107 2 1_555 B CYS 82 B CYS 82 4 1_555 B CYS 83 B CYS 83 4 1_555 B ARG 127 B ARG 127 4 1_555 B PRO 202 B PRO 202 4 1_555 B ARG 96 B ARG 96 3 1_555 B GLY 97 B GLY 97 3 1_555 B GLN 98 B GLN 98 3 1_555 214 I 41 3 2