0.019132 0.000000 0.000000 0.000000 0.018499 0.000000 0.000000 0.000000 0.010382 0.00000 0.00000 0.00000 Malashkevich, V.N. Toro, R. Hobbs, M.E. Raushel, F.M. Almo, S.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 52.269 54.058 96.316 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US Biochemistry BICHAW 0033 0006-2960 51 3497 3507 10.1021/bi300307b 22475079 Structure and Catalytic Mechanism of LigI: Insight into the Amidohydrolase Enzymes of cog3618 and Lignin Degradation. 2012 0000-0002-2487-9713 10.2210/pdb4dia/pdb pdb_00004dia 100 1 CCD 2010-11-29 ADSC QUANTUM 315 SINGLE WAVELENGTH x-ray 1 1.075 1.0 X29A NSLS 1.075 SYNCHROTRON NSLS BEAMLINE X29A 34029.785 2-pyrone-4,6-dicarbaxylate hydrolase D246N 1 man polymer 18.015 water 122 nat water 2-pyrone-4,6-dicarboxylic acid hydrolase no no MSLTNDERILSWNETPSKPRYTPPPGAIDAHCHVFGPMAQFPFSPKAKYLPRDAGPDMLFALRDHLGFARNVIVQASCHG TDNAATLDAIARAQGKARGIAVVDPAIDEAELAALHEGGMRGIRFNFLKRLVDDAPKDKFLEVAGRLPAGWHVVIYFEAD ILEELRPFMDAIPVPIVIDHMGRPDVRQGPDGADMKAFRRLLDSREDIWFKATCPDRLDPAGPPWDDFARSVAPLVADYA DRVIWGTNWPHPNMQDAIPDDGLVVDMIPRIAPTPELQHKMLVTNPMRLYWSEEMEGHHHHHH MSLTNDERILSWNETPSKPRYTPPPGAIDAHCHVFGPMAQFPFSPKAKYLPRDAGPDMLFALRDHLGFARNVIVQASCHG TDNAATLDAIARAQGKARGIAVVDPAIDEAELAALHEGGMRGIRFNFLKRLVDDAPKDKFLEVAGRLPAGWHVVIYFEAD ILEELRPFMDAIPVPIVIDHMGRPDVRQGPDGADMKAFRRLLDSREDIWFKATCPDRLDPAGPPWDDFARSVAPLVADYA DRVIWGTNWPHPNMQDAIPDDGLVVDMIPRIAPTPELQHKMLVTNPMRLYWSEEMEGHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n SYK-6 sample ligI 13689 Sphingomonas paucimobilis 469008 Escherichia coli BL21(DE3)CODON+RIL plasmid BC-PSGX3(BC) 1 2.00 38.48 VAPOR DIFFUSION, HANGING DROP 4.6 30% peg4000, 0.1 M Na-acetate pH 4.6, 0.2 M ammonium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 citation_author struct_ref_seq_dif chem_comp_atom chem_comp_bond database_2 repository Initial release Database references Database references Database references Database references Data collection Database references 1 0 2012-10-03 1 1 2013-01-09 1 2 2013-01-23 1 3 2013-02-20 1 4 2021-02-10 1 5 2024-02-28 _citation_author.identifier_ORCID _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession 2012-10-03 SPRSDE N RCSB Y RCSB 2012-01-11 REL REL HOH water HOH 1 2 HOH HOH 401 A HOH 2 2 HOH HOH 402 A HOH 3 2 HOH HOH 403 A HOH 4 2 HOH HOH 404 A HOH 5 2 HOH HOH 405 A HOH 6 2 HOH HOH 406 A HOH 8 2 HOH HOH 407 A HOH 9 2 HOH HOH 408 A HOH 10 2 HOH HOH 409 A HOH 11 2 HOH HOH 410 A HOH 12 2 HOH HOH 411 A HOH 13 2 HOH HOH 412 A HOH 14 2 HOH HOH 413 A HOH 15 2 HOH HOH 414 A HOH 16 2 HOH HOH 415 A HOH 17 2 HOH HOH 416 A HOH 18 2 HOH HOH 417 A HOH 19 2 HOH HOH 418 A HOH 20 2 HOH HOH 419 A HOH 21 2 HOH HOH 420 A HOH 22 2 HOH HOH 421 A HOH 23 2 HOH HOH 422 A HOH 24 2 HOH HOH 423 A HOH 25 2 HOH HOH 424 A HOH 26 2 HOH HOH 425 A HOH 29 2 HOH HOH 426 A HOH 30 2 HOH HOH 427 A HOH 31 2 HOH HOH 428 A HOH 32 2 HOH HOH 429 A HOH 33 2 HOH HOH 430 A HOH 34 2 HOH HOH 431 A HOH 35 2 HOH HOH 432 A HOH 36 2 HOH HOH 433 A HOH 37 2 HOH HOH 434 A HOH 39 2 HOH HOH 435 A HOH 40 2 HOH HOH 436 A HOH 42 2 HOH HOH 437 A HOH 43 2 HOH HOH 438 A HOH 44 2 HOH HOH 439 A HOH 45 2 HOH HOH 440 A HOH 46 2 HOH HOH 441 A HOH 47 2 HOH HOH 442 A HOH 49 2 HOH HOH 443 A HOH 50 2 HOH HOH 444 A HOH 51 2 HOH HOH 445 A HOH 52 2 HOH HOH 446 A HOH 54 2 HOH HOH 447 A HOH 55 2 HOH HOH 448 A HOH 57 2 HOH HOH 449 A HOH 62 2 HOH HOH 450 A HOH 63 2 HOH HOH 451 A HOH 64 2 HOH HOH 452 A HOH 66 2 HOH HOH 453 A HOH 68 2 HOH HOH 454 A HOH 69 2 HOH HOH 455 A HOH 71 2 HOH HOH 456 A HOH 72 2 HOH HOH 457 A HOH 73 2 HOH HOH 458 A HOH 74 2 HOH HOH 459 A HOH 75 2 HOH HOH 460 A HOH 76 2 HOH HOH 461 A HOH 77 2 HOH HOH 462 A HOH 79 2 HOH HOH 463 A HOH 82 2 HOH HOH 464 A HOH 83 2 HOH HOH 465 A HOH 84 2 HOH HOH 466 A HOH 85 2 HOH HOH 467 A HOH 86 2 HOH HOH 468 A HOH 88 2 HOH HOH 469 A HOH 91 2 HOH HOH 470 A HOH 93 2 HOH HOH 471 A HOH 97 2 HOH HOH 472 A HOH 98 2 HOH HOH 473 A HOH 99 2 HOH HOH 474 A HOH 100 2 HOH HOH 475 A HOH 101 2 HOH HOH 476 A HOH 102 2 HOH HOH 477 A HOH 103 2 HOH HOH 478 A HOH 104 2 HOH HOH 479 A HOH 106 2 HOH HOH 480 A HOH 107 2 HOH HOH 481 A HOH 108 2 HOH HOH 482 A HOH 109 2 HOH HOH 483 A HOH 110 2 HOH HOH 484 A HOH 111 2 HOH HOH 485 A HOH 113 2 HOH HOH 486 A HOH 115 2 HOH HOH 487 A HOH 116 2 HOH HOH 488 A HOH 117 2 HOH HOH 489 A HOH 118 2 HOH HOH 490 A HOH 119 2 HOH HOH 491 A HOH 120 2 HOH HOH 492 A HOH 124 2 HOH HOH 493 A HOH 126 2 HOH HOH 494 A HOH 127 2 HOH HOH 495 A HOH 128 2 HOH HOH 496 A HOH 135 2 HOH HOH 497 A HOH 137 2 HOH HOH 498 A HOH 138 2 HOH HOH 499 A HOH 142 2 HOH HOH 500 A HOH 143 2 HOH HOH 501 A HOH 146 2 HOH HOH 502 A HOH 149 2 HOH HOH 503 A HOH 151 2 HOH HOH 504 A HOH 152 2 HOH HOH 505 A HOH 156 2 HOH HOH 506 A HOH 157 2 HOH HOH 507 A HOH 158 2 HOH HOH 508 A HOH 159 2 HOH HOH 509 A HOH 160 2 HOH HOH 510 A HOH 161 2 HOH HOH 511 A HOH 162 2 HOH HOH 512 A HOH 163 2 HOH HOH 513 A HOH 164 2 HOH HOH 514 A HOH 165 2 HOH HOH 515 A HOH 166 2 HOH HOH 516 A HOH 167 2 HOH HOH 517 A HOH 168 2 HOH HOH 518 A HOH 169 2 HOH HOH 519 A HOH 170 2 HOH HOH 520 A HOH 171 2 HOH HOH 521 A HOH 172 2 HOH HOH 522 A 42.820 2.500 2.500 48.160 48.160 Phaser MODE: MR_AUTO n 1 1 A n 2 2 A LEU 3 n 3 LEU 3 A THR 4 n 4 THR 4 A ASN 5 n 5 ASN 5 A ASP 6 n 6 ASP 6 A GLU 7 n 7 GLU 7 A ARG 8 n 8 ARG 8 A ILE 9 n 9 ILE 9 A LEU 10 n 10 LEU 10 A SER 11 n 11 SER 11 A TRP 12 n 12 TRP 12 A ASN 13 n 13 ASN 13 A GLU 14 n 14 GLU 14 A THR 15 n 15 THR 15 A PRO 16 n 16 PRO 16 A SER 17 n 17 SER 17 A LYS 18 n 18 LYS 18 A PRO 19 n 19 PRO 19 A ARG 20 n 20 ARG 20 A TYR 21 n 21 TYR 21 A THR 22 n 22 THR 22 A PRO 23 n 23 PRO 23 A PRO 24 n 24 PRO 24 A PRO 25 n 25 PRO 25 A GLY 26 n 26 GLY 26 A ALA 27 n 27 ALA 27 A ILE 28 n 28 ILE 28 A ASP 29 n 29 ASP 29 A ALA 30 n 30 ALA 30 A HIS 31 n 31 HIS 31 A CYS 32 n 32 CYS 32 A HIS 33 n 33 HIS 33 A VAL 34 n 34 VAL 34 A PHE 35 n 35 PHE 35 A GLY 36 n 36 GLY 36 A PRO 37 n 37 PRO 37 A MET 38 n 38 MET 38 A ALA 39 n 39 ALA 39 A GLN 40 n 40 GLN 40 A PHE 41 n 41 PHE 41 A PRO 42 n 42 PRO 42 A PHE 43 n 43 PHE 43 A SER 44 n 44 SER 44 A PRO 45 n 45 PRO 45 A LYS 46 n 46 LYS 46 A ALA 47 n 47 ALA 47 A LYS 48 n 48 LYS 48 A TYR 49 n 49 TYR 49 A LEU 50 n 50 LEU 50 A PRO 51 n 51 PRO 51 A ARG 52 n 52 ARG 52 A ASP 53 n 53 ASP 53 A ALA 54 n 54 ALA 54 A GLY 55 n 55 GLY 55 A PRO 56 n 56 PRO 56 A ASP 57 n 57 ASP 57 A MET 58 n 58 MET 58 A LEU 59 n 59 LEU 59 A PHE 60 n 60 PHE 60 A ALA 61 n 61 ALA 61 A LEU 62 n 62 LEU 62 A ARG 63 n 63 ARG 63 A ASP 64 n 64 ASP 64 A HIS 65 n 65 HIS 65 A LEU 66 n 66 LEU 66 A GLY 67 n 67 GLY 67 A PHE 68 n 68 PHE 68 A ALA 69 n 69 ALA 69 A ARG 70 n 70 ARG 70 A ASN 71 n 71 ASN 71 A VAL 72 n 72 VAL 72 A ILE 73 n 73 ILE 73 A VAL 74 n 74 VAL 74 A GLN 75 n 75 GLN 75 A ALA 76 n 76 ALA 76 A SER 77 n 77 SER 77 A CYS 78 n 78 CYS 78 A HIS 79 n 79 HIS 79 A GLY 80 n 80 GLY 80 A THR 81 n 81 THR 81 A ASP 82 n 82 ASP 82 A ASN 83 n 83 ASN 83 A ALA 84 n 84 ALA 84 A ALA 85 n 85 ALA 85 A THR 86 n 86 THR 86 A LEU 87 n 87 LEU 87 A ASP 88 n 88 ASP 88 A ALA 89 n 89 ALA 89 A ILE 90 n 90 ILE 90 A ALA 91 n 91 ALA 91 A ARG 92 n 92 ARG 92 A ALA 93 n 93 ALA 93 A GLN 94 n 94 GLN 94 A GLY 95 n 95 GLY 95 A LYS 96 n 96 LYS 96 A ALA 97 n 97 ALA 97 A ARG 98 n 98 ARG 98 A GLY 99 n 99 GLY 99 A ILE 100 n 100 ILE 100 A ALA 101 n 101 ALA 101 A VAL 102 n 102 VAL 102 A VAL 103 n 103 VAL 103 A ASP 104 n 104 ASP 104 A PRO 105 n 105 PRO 105 A ALA 106 n 106 ALA 106 A ILE 107 n 107 ILE 107 A ASP 108 n 108 ASP 108 A GLU 109 n 109 GLU 109 A ALA 110 n 110 ALA 110 A GLU 111 n 111 GLU 111 A LEU 112 n 112 LEU 112 A ALA 113 n 113 ALA 113 A ALA 114 n 114 ALA 114 A LEU 115 n 115 LEU 115 A HIS 116 n 116 HIS 116 A GLU 117 n 117 GLU 117 A GLY 118 n 118 GLY 118 A GLY 119 n 119 GLY 119 A MET 120 n 120 MET 120 A ARG 121 n 121 ARG 121 A GLY 122 n 122 GLY 122 A ILE 123 n 123 ILE 123 A ARG 124 n 124 ARG 124 A PHE 125 n 125 PHE 125 A ASN 126 n 126 ASN 126 A PHE 127 n 127 PHE 127 A LEU 128 n 128 LEU 128 A n 129 129 A n 130 130 A n 131 131 A n 132 132 A n 133 133 A n 134 134 A n 135 135 A PRO 136 n 136 PRO 136 A LYS 137 n 137 LYS 137 A ASP 138 n 138 ASP 138 A LYS 139 n 139 LYS 139 A PHE 140 n 140 PHE 140 A LEU 141 n 141 LEU 141 A GLU 142 n 142 GLU 142 A VAL 143 n 143 VAL 143 A ALA 144 n 144 ALA 144 A GLY 145 n 145 GLY 145 A ARG 146 n 146 ARG 146 A LEU 147 n 147 LEU 147 A PRO 148 n 148 PRO 148 A ALA 149 n 149 ALA 149 A GLY 150 n 150 GLY 150 A TRP 151 n 151 TRP 151 A HIS 152 n 152 HIS 152 A VAL 153 n 153 VAL 153 A VAL 154 n 154 VAL 154 A ILE 155 n 155 ILE 155 A TYR 156 n 156 TYR 156 A PHE 157 n 157 PHE 157 A GLU 158 n 158 GLU 158 A ALA 159 n 159 ALA 159 A ASP 160 n 160 ASP 160 A ILE 161 n 161 ILE 161 A LEU 162 n 162 LEU 162 A GLU 163 n 163 GLU 163 A GLU 164 n 164 GLU 164 A LEU 165 n 165 LEU 165 A ARG 166 n 166 ARG 166 A PRO 167 n 167 PRO 167 A PHE 168 n 168 PHE 168 A MET 169 n 169 MET 169 A ASP 170 n 170 ASP 170 A ALA 171 n 171 ALA 171 A ILE 172 n 172 ILE 172 A PRO 173 n 173 PRO 173 A VAL 174 n 174 VAL 174 A PRO 175 n 175 PRO 175 A ILE 176 n 176 ILE 176 A VAL 177 n 177 VAL 177 A ILE 178 n 178 ILE 178 A ASP 179 n 179 ASP 179 A HIS 180 n 180 HIS 180 A MET 181 n 181 MET 181 A GLY 182 n 182 GLY 182 A ARG 183 n 183 ARG 183 A PRO 184 n 184 PRO 184 A ASP 185 n 185 ASP 185 A VAL 186 n 186 VAL 186 A ARG 187 n 187 ARG 187 A GLN 188 n 188 GLN 188 A GLY 189 n 189 GLY 189 A PRO 190 n 190 PRO 190 A ASP 191 n 191 ASP 191 A GLY 192 n 192 GLY 192 A ALA 193 n 193 ALA 193 A ASP 194 n 194 ASP 194 A MET 195 n 195 MET 195 A LYS 196 n 196 LYS 196 A ALA 197 n 197 ALA 197 A PHE 198 n 198 PHE 198 A ARG 199 n 199 ARG 199 A ARG 200 n 200 ARG 200 A LEU 201 n 201 LEU 201 A LEU 202 n 202 LEU 202 A ASP 203 n 203 ASP 203 A SER 204 n 204 SER 204 A ARG 205 n 205 ARG 205 A GLU 206 n 206 GLU 206 A ASP 207 n 207 ASP 207 A ILE 208 n 208 ILE 208 A TRP 209 n 209 TRP 209 A PHE 210 n 210 PHE 210 A LYS 211 n 211 LYS 211 A ALA 212 n 212 ALA 212 A THR 213 n 213 THR 213 A CYS 214 n 214 CYS 214 A PRO 215 n 215 PRO 215 A ASP 216 n 216 ASP 216 A ARG 217 n 217 ARG 217 A LEU 218 n 218 LEU 218 A ASP 219 n 219 ASP 219 A PRO 220 n 220 PRO 220 A ALA 221 n 221 ALA 221 A GLY 222 n 222 GLY 222 A PRO 223 n 223 PRO 223 A PRO 224 n 224 PRO 224 A TRP 225 n 225 TRP 225 A ASP 226 n 226 ASP 226 A ASP 227 n 227 ASP 227 A PHE 228 n 228 PHE 228 A ALA 229 n 229 ALA 229 A ARG 230 n 230 ARG 230 A SER 231 n 231 SER 231 A VAL 232 n 232 VAL 232 A ALA 233 n 233 ALA 233 A PRO 234 n 234 PRO 234 A LEU 235 n 235 LEU 235 A VAL 236 n 236 VAL 236 A ALA 237 n 237 ALA 237 A ASP 238 n 238 ASP 238 A TYR 239 n 239 TYR 239 A ALA 240 n 240 ALA 240 A ASP 241 n 241 ASP 241 A ARG 242 n 242 ARG 242 A VAL 243 n 243 VAL 243 A ILE 244 n 244 ILE 244 A TRP 245 n 245 TRP 245 A GLY 246 n 246 GLY 246 A THR 247 n 247 THR 247 A ASN 248 n 248 ASN 248 A TRP 249 n 249 TRP 249 A PRO 250 n 250 PRO 250 A HIS 251 n 251 HIS 251 A PRO 252 n 252 PRO 252 A ASN 253 n 253 ASN 253 A MET 254 n 254 MET 254 A GLN 255 n 255 GLN 255 A ASP 256 n 256 ASP 256 A ALA 257 n 257 ALA 257 A ILE 258 n 258 ILE 258 A PRO 259 n 259 PRO 259 A ASP 260 n 260 ASP 260 A ASP 261 n 261 ASP 261 A GLY 262 n 262 GLY 262 A LEU 263 n 263 LEU 263 A VAL 264 n 264 VAL 264 A VAL 265 n 265 VAL 265 A ASP 266 n 266 ASP 266 A MET 267 n 267 MET 267 A ILE 268 n 268 ILE 268 A PRO 269 n 269 PRO 269 A ARG 270 n 270 ARG 270 A ILE 271 n 271 ILE 271 A ALA 272 n 272 ALA 272 A PRO 273 n 273 PRO 273 A THR 274 n 274 THR 274 A PRO 275 n 275 PRO 275 A GLU 276 n 276 GLU 276 A LEU 277 n 277 LEU 277 A GLN 278 n 278 GLN 278 A HIS 279 n 279 HIS 279 A LYS 280 n 280 LYS 280 A MET 281 n 281 MET 281 A LEU 282 n 282 LEU 282 A VAL 283 n 283 VAL 283 A THR 284 n 284 THR 284 A ASN 285 n 285 ASN 285 A PRO 286 n 286 PRO 286 A MET 287 n 287 MET 287 A ARG 288 n 288 ARG 288 A LEU 289 n 289 LEU 289 A TYR 290 n 290 TYR 290 A TRP 291 n 291 TRP 291 A SER 292 n 292 SER 292 A GLU 293 n 293 GLU 293 A GLU 294 n 294 GLU 294 A MET 295 n 295 MET 295 A n 296 296 A n 297 297 A n 298 298 A n 299 299 A n 300 300 A n 301 301 A n 302 302 A n 303 303 A 0.5317 0.1066 -0.5118 0.9602 -0.4556 1.8542 -0.0080 0.0476 0.0036 0.0634 0.0871 0.0149 -0.2375 -0.2618 -0.0792 0.0483 0.0387 0.0006 0.0533 0.0168 0.0471 refined 12.5703 -1.0990 -13.3149 X-RAY DIFFRACTION A 2 A 295 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N CYS 32 A N CYS 32 A O VAL 74 A O VAL 74 A N ILE 73 A N ILE 73 A O ARG 98 A O ARG 98 A N GLY 99 A N GLY 99 A O ARG 121 A O ARG 121 A N ILE 123 A N ILE 123 A O VAL 154 A O VAL 154 A N ILE 155 A N ILE 155 A O VAL 177 A O VAL 177 A N ILE 176 A N ILE 176 A O TRP 209 A O TRP 209 A N PHE 210 A N PHE 210 A O ILE 244 A O ILE 244 1 A CD1 TYR 49 A CD1 TYR 49 1 Y 1 A CD2 TYR 49 A CD2 TYR 49 1 Y 1 A CE1 TYR 49 A CE1 TYR 49 1 Y 1 A CE2 TYR 49 A CE2 TYR 49 1 Y 1 A CZ TYR 49 A CZ TYR 49 1 Y 1 A OH TYR 49 A OH TYR 49 1 Y 1 A CD ARG 217 A CD ARG 217 1 Y 1 A NE ARG 217 A NE ARG 217 1 Y 1 A CZ ARG 217 A CZ ARG 217 1 Y 1 A NH1 ARG 217 A NH1 ARG 217 1 Y 1 A NH2 ARG 217 A NH2 ARG 217 1 Y 1 A MET 1 A MET 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A LYS 129 A LYS 129 1 Y 1 A ARG 130 A ARG 130 1 Y 1 A LEU 131 A LEU 131 1 Y 1 A VAL 132 A VAL 132 1 Y 1 A ASP 133 A ASP 133 1 Y 1 A ASP 134 A ASP 134 1 Y 1 A ALA 135 A ALA 135 1 Y 1 A GLU 296 A GLU 296 1 Y 1 A GLY 297 A GLY 297 1 Y 1 A HIS 298 A HIS 298 1 Y 1 A HIS 299 A HIS 299 1 Y 1 A HIS 300 A HIS 300 1 Y 1 A HIS 301 A HIS 301 1 Y 1 A HIS 302 A HIS 302 1 Y 1 A HIS 303 A HIS 303 1 Y 1 A HIS 31 -152.05 89.03 1 A PHE 127 -85.35 30.96 1 A CYS 214 71.92 57.65 1 A PRO 250 -95.01 32.03 1 A ALA 257 -151.88 67.95 1 A VAL 283 -124.90 -68.57 87.440 35.4497 19.190 0.0000 0.0000 0.0000 -0.0100 0.0000 0.0200 0.9610 0.9420 U VALUES : WITH TLS ADDED. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 0.2269 0.1804 0.1828 2.0000 19.2300 950 18573 5.1000 97.4800 0.2074 0.1670 1.000 0.500 0.8459 8.4310 0.1170 0.2006 0.1711 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.2010 0.1710 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD MASK 2.0000 19.2300 122 2362 0 0 2240 0.010 0.019 2328 1.381 1.959 3180 5.922 5.000 290 31.900 23.182 110 15.021 15.000 357 20.137 15.000 21 0.090 0.200 337 0.006 0.022 1840 0.3300 0.2290 2.0510 58 1159 1217 20 99.3500 1.940 50.000 4DIA 20448 0.093 1.594 1 8.700 6.800 98.100 0.648 1.940 1.970 985 1.064 1 6.000 98.000 0.588 1.970 2.010 1006 0.984 1 6.600 97.800 0.517 2.010 2.050 1007 1.072 1 6.800 99.900 0.486 2.050 2.090 1034 1.118 1 6.900 100.000 0.439 2.090 2.140 1022 1.152 1 7.000 100.000 0.365 2.140 2.180 1023 1.115 1 7.000 100.000 0.311 2.180 2.240 1018 1.198 1 7.100 100.000 0.277 2.240 2.300 1048 1.270 1 7.100 100.000 0.241 2.300 2.370 1024 1.291 1 7.000 100.000 0.229 2.370 2.440 1034 1.301 1 7.100 100.000 0.177 2.440 2.530 1013 1.516 1 7.000 100.000 0.154 2.530 2.630 1042 1.534 1 7.000 100.000 0.137 2.630 2.750 1046 1.689 1 7.000 100.000 0.113 2.750 2.900 1041 1.756 1 7.000 100.000 0.095 2.900 3.080 1044 1.917 1 6.900 100.000 0.080 3.080 3.320 1049 2.173 1 6.900 100.000 0.071 3.320 3.650 1046 2.669 1 6.800 100.000 0.061 3.650 4.180 858 3.052 1 5.600 79.400 0.047 4.180 5.260 951 2.425 1 6.400 87.600 0.039 5.260 50.000 1157 2.080 1 6.300 99.700 data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Wed Jun 24 14:00:05 2009 http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.1.4 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data collection CBASS data reduction HKL-3000 CRYSTAL STRUCTURE OF THE D248N mutant of 2-PYRONE-4,6-DICARBOXYLIC ACID HYDROLASE FROM SPHINGOMONAS PAUCIMOBILIS complexed with substrate at pH 4.6 1 N N 2 N N monomer A THR 4 A THR 4 HELX_P A ARG 8 A ARG 8 5 1 5 A GLY 55 A GLY 55 HELX_P A GLY 67 A GLY 67 1 2 13 A ALA 76 A ALA 76 HELX_P A GLY 80 A GLY 80 5 3 5 A ASN 83 A ASN 83 HELX_P A ALA 93 A ALA 93 1 4 11 A ASP 108 A ASP 108 HELX_P A GLY 118 A GLY 118 1 5 11 A ASP 138 A ASP 138 HELX_P A GLY 145 A GLY 145 1 6 8 A GLU 158 A GLU 158 HELX_P A ASP 160 A ASP 160 5 7 3 A ILE 161 A ILE 161 HELX_P A ILE 172 A ILE 172 1 8 12 A HIS 180 A HIS 180 HELX_P A ARG 183 A ARG 183 5 9 4 A ASP 185 A ASP 185 HELX_P A GLY 189 A GLY 189 5 10 5 A GLY 192 A GLY 192 HELX_P A SER 204 A SER 204 1 11 13 A CYS 214 A CYS 214 HELX_P A ASP 219 A ASP 219 1 12 6 A TRP 225 A TRP 225 HELX_P A TYR 239 A TYR 239 1 13 15 A ASP 260 A ASP 260 HELX_P A MET 267 A MET 267 1 14 8 A MET 267 A MET 267 HELX_P A ALA 272 A ALA 272 1 15 6 A THR 274 A THR 274 HELX_P A VAL 283 A VAL 283 1 16 10 A VAL 283 A VAL 283 HELX_P A TRP 291 A TRP 291 1 17 9 A SER 292 A SER 292 HELX_P A MET 295 A MET 295 5 18 4 HYDROLASE HYDROLASE A GLY 36 A GLY 36 1 A PRO 37 A PRO 37 4.47 A PRO 223 A PRO 223 1 A PRO 224 A PRO 224 3.96 A TRP 249 A TRP 249 1 A PRO 250 A PRO 250 3.69 O87170_PSEPA UNP 1 2 O87170 TNDERILSWNETPSKPRYTPPPGAIDAHCHVFGPMAQFPFSPKAKYLPRDAGPDMLFALRDHLGFARNVIVQASCHGTDN AATLDAIARAQGKARGIAVVDPAIDEAELAALHEGGMRGIRFNFLKRLVDDAPKDKFLEVAGRLPAGWHVVIYFEADILE ELRPFMDAIPVPIVIDHMGRPDVRQGPDGADMKAFRRLLDSREDIWFKATCPDRLDPAGPPWDDFARSVAPLVADYADRV IWGTDWPHPNMQDAIPDDGLVVDMIPRIAPTPELQHKMLVTNPMRLYWSEEM 2 293 4DIA 4 295 O87170 A 1 4 295 1 expression tag MET 1 4DIA A O87170 UNP 1 1 expression tag SER 2 4DIA A O87170 UNP 2 1 expression tag LEU 3 4DIA A O87170 UNP 3 1 ASP engineered mutation ASN 248 4DIA A O87170 UNP 246 248 1 expression tag GLU 296 4DIA A O87170 UNP 296 1 expression tag GLY 297 4DIA A O87170 UNP 297 1 expression tag HIS 298 4DIA A O87170 UNP 298 1 expression tag HIS 299 4DIA A O87170 UNP 299 1 expression tag HIS 300 4DIA A O87170 UNP 300 1 expression tag HIS 301 4DIA A O87170 UNP 301 1 expression tag HIS 302 4DIA A O87170 UNP 302 1 expression tag HIS 303 4DIA A O87170 UNP 303 8 parallel parallel parallel parallel parallel parallel parallel A ILE 28 A ILE 28 A CYS 32 A CYS 32 A ARG 70 A ARG 70 A VAL 74 A VAL 74 A ALA 97 A ALA 97 A ALA 101 A ALA 101 A MET 120 A MET 120 A ASN 126 A ASN 126 A HIS 152 A HIS 152 A TYR 156 A TYR 156 A ILE 176 A ILE 176 A ILE 178 A ILE 178 A ILE 208 A ILE 208 A LYS 211 A LYS 211 A VAL 243 A VAL 243 A ILE 244 A ILE 244 19 P 21 21 21