0.023058
-0.008548
0.001602
0.000000
0.023544
-0.009038
0.000000
0.000000
0.020840
0.00000
0.00000
0.00000
Russo Krauss, I.
Merlino, A.
Mazzarella, L.
Sica, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
68.97
86.11
69.66
43.369
45.299
51.519
C21 H34 Cl N6 O3 1
453.986
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
PPACK
peptide-like
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
R
C
N
3
N
C
N
4
N
O
N
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
N
12
N
N
N
13
S
C
N
14
N
C
N
15
N
O
N
16
N
C
N
17
N
C
N
18
N
C
N
19
N
N
N
20
S
C
N
21
S
C
N
22
N
O
N
23
N
C
N
24
N
C
N
25
N
C
N
26
N
N
N
27
N
C
N
28
N
N
N
29
N
N
N
30
N
C
N
31
N
CL
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
N
N
67
S
C
N
68
N
C
N
69
N
O
N
70
N
C
N
71
N
O
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
N
N
80
S
C
N
81
N
C
N
82
N
O
N
83
N
C
N
84
N
C
N
85
N
C
N
86
N
N
N
87
N
C
N
88
N
N
N
89
N
N
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
N
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
CL
N
140
N
N
N
141
R
C
N
142
N
C
N
143
N
O
N
144
N
C
N
145
N
S
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
O
N
155
N
P
N
156
N
O
N
157
N
O
N
158
N
O
N
159
N
C
N
160
R
C
N
161
N
O
N
162
S
C
N
163
N
O
N
164
N
C
N
165
R
C
Y
166
N
N
Y
167
N
C
Y
168
N
N
Y
169
N
C
N
170
N
C
N
171
N
O
N
172
N
N
N
173
N
C
N
174
N
N
N
175
N
N
Y
176
N
C
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
O
N
192
N
P
N
193
N
O
N
194
N
O
N
195
N
O
N
196
N
C
N
197
R
C
N
198
N
O
N
199
S
C
N
200
N
O
N
201
N
C
N
202
R
C
N
203
N
N
N
204
N
C
N
205
N
O
N
206
N
N
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
O
N
235
N
N
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
O
N
255
N
O
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
N
C
N
268
N
C
N
269
N
O
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
Y
281
N
C
Y
282
N
N
Y
283
N
C
Y
284
N
C
Y
285
N
N
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
S
C
N
305
N
C
N
306
N
C
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
K
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
N
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
S
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
NA
N
391
R
C
N
392
R
C
N
393
R
C
N
394
S
C
N
395
R
C
N
396
N
C
N
397
N
C
N
398
N
C
N
399
N
N
N
400
N
O
N
401
N
O
N
402
N
O
N
403
N
O
N
404
N
O
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
N
N
445
S
C
N
446
N
C
N
447
N
O
N
448
N
C
N
449
N
C
N
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
N
N
462
S
C
N
463
N
C
N
464
N
O
N
465
N
C
N
466
N
O
N
467
N
O
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
N
N
476
S
C
N
477
N
C
N
478
N
O
N
479
R
C
N
480
N
O
N
481
N
C
N
482
N
O
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
N
N
493
S
C
N
494
N
C
N
495
N
O
N
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
N
Y
501
N
C
Y
502
N
C
Y
503
N
C
Y
504
N
C
Y
505
N
C
N
506
N
O
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
N
N
520
S
C
N
521
N
C
N
522
N
O
N
523
N
C
Y
524
N
C
Y
525
N
C
Y
526
N
C
Y
527
N
C
Y
528
N
C
Y
529
N
C
N
530
N
O
N
531
N
O
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
N
N
544
S
C
N
545
N
C
N
546
N
O
N
547
N
C
N
548
N
C
N
549
N
C
N
550
N
O
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
Y
12
N
doub
Y
13
N
sing
Y
14
N
sing
N
15
N
sing
Y
16
N
doub
N
17
N
sing
Y
18
N
doub
N
19
N
sing
Y
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
Y
172
N
sing
Y
173
N
sing
Y
174
N
doub
N
175
N
sing
Y
176
N
sing
N
177
N
sing
Y
178
N
doub
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
Y
282
N
sing
Y
283
N
doub
Y
284
N
doub
N
285
N
sing
Y
286
N
sing
N
287
N
sing
Y
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
doub
N
427
N
sing
Y
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
doub
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
doub
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
doub
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
Y
489
N
doub
Y
490
N
sing
Y
491
N
sing
N
492
N
sing
Y
493
N
doub
Y
494
N
sing
Y
495
N
sing
N
496
N
sing
Y
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
doub
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
Y
517
N
doub
Y
518
N
sing
Y
519
N
sing
N
520
N
sing
Y
521
N
doub
N
522
N
sing
Y
523
N
doub
N
524
N
sing
Y
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
doub
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
40
8119
8128
10.1093/nar/gks512
22669903
High-resolution structures of two complexes between thrombin and thrombin-binding aptamer shed light on the role of cations in the aptamer inhibitory activity.
2012
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
39
7858
7867
10.1093/nar/gkr522
21715374
Thrombin-aptamer recognition: a revealed ambiguity.
2011
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
268
17651
17654
8102368
The structure of alpha-thrombin inhibited by a 15-mer single-stranded DNA aptamer.
1993
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
52
272
282
10.1107/S0907444995013977
15299700
An ambiguous structure of a DNA 15-mer thrombin complex.
1996
10.2210/pdb4dii/pdb
pdb_00004dii
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
mirrors
CCD
2009-12-10
RIGAKU SATURN 944
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
4096.534
Prothrombin
3.4.21.5
Light chain (UNP Residues 328-363)
1
nat
polymer
29780.219
Prothrombin
3.4.21.5
Heavy chain (UNP Residues 364-622)
1
nat
polymer
4743.051
Thrombin binding aptamer
1
syn
polymer
65.409
ZINC ION
2
syn
non-polymer
453.986
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
1
syn
non-polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
35.453
CHLORIDE ION
2
syn
non-polymer
39.098
POTASSIUM ION
1
syn
non-polymer
18.015
water
183
nat
water
Coagulation factor II, Thrombin light chain
Coagulation factor II, Thrombin heavy chain
no
no
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
L
polypeptide(L)
no
no
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
H
polypeptide(L)
no
no
(DG)(DG)(DT)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DT)(DG)(DG)
GGTTGGTGTGGTTGG
D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
9606
Homo sapiens
human
sample
9606
Homo sapiens
1
2.29
46.26
VAPOR DIFFUSION, SITTING DROP
7.4
10-15% w/v polyethylene glycol 8000, 0.05 M zinc acetate, 0.1 M sodium cacodylate , pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
pdbx_struct_conn_angle
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Other
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2012-07-18
1
1
2012-09-26
1
2
2013-02-27
1
3
2020-07-29
1
4
2023-09-13
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
The same complex in the presence of Na+ ion
RCSB
Y
RCSB
2012-01-31
REL
REL
ZN
ZINC ION
0G6
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
NA
SODIUM ION
CL
CHLORIDE ION
K
POTASSIUM ION
HOH
water
32630
Synthetic DNA
sample
THE INHIBITOR IS COVALENTLY CONNECTED TO ACTIVE_SITE RESIDUES:
1) VIA A HEMIKETAL GROUP TO OG SER 195 IN CHAIN H
2) VIA A METHYLENE GROUP TO NE2 HIS 57 IN CHAIN H
3QLP
PDB ENTRY 3QLP AND 1HAO
PDB
experimental model
1HAO
PDB ENTRY 3QLP AND 1HAO
PDB
experimental model
Inhibitor
D-Phe-Pro-Arg-CH2Cl
Peptide-like
ZN
1031
4
ZN
ZN
101
L
0G6
1
5
0G6
0G6
301
H
NAG
2
6
NAG
NAG
302
H
NA
417
7
NA
NA
303
H
ZN
1032
4
ZN
ZN
304
H
CL
418
8
CL
CL
305
H
CL
419
8
CL
CL
306
H
K
416
9
K
K
101
D
HOH
1047
10
HOH
HOH
201
L
HOH
1057
10
HOH
HOH
202
L
HOH
1072
10
HOH
HOH
203
L
HOH
1118
10
HOH
HOH
204
L
HOH
1141
10
HOH
HOH
205
L
HOH
1151
10
HOH
HOH
206
L
HOH
1154
10
HOH
HOH
207
L
HOH
1191
10
HOH
HOH
208
L
HOH
1206
10
HOH
HOH
209
L
HOH
1185
10
HOH
HOH
210
L
HOH
1033
10
HOH
HOH
401
H
HOH
1034
10
HOH
HOH
402
H
HOH
1035
10
HOH
HOH
403
H
HOH
1036
10
HOH
HOH
404
H
HOH
1037
10
HOH
HOH
405
H
HOH
1038
10
HOH
HOH
406
H
HOH
1039
10
HOH
HOH
407
H
HOH
1041
10
HOH
HOH
408
H
HOH
1042
10
HOH
HOH
409
H
HOH
1043
10
HOH
HOH
410
H
HOH
1045
10
HOH
HOH
411
H
HOH
1046
10
HOH
HOH
412
H
HOH
1048
10
HOH
HOH
413
H
HOH
1049
10
HOH
HOH
414
H
HOH
1050
10
HOH
HOH
415
H
HOH
1051
10
HOH
HOH
416
H
HOH
1052
10
HOH
HOH
417
H
HOH
1053
10
HOH
HOH
418
H
HOH
1054
10
HOH
HOH
419
H
HOH
1055
10
HOH
HOH
420
H
HOH
1056
10
HOH
HOH
421
H
HOH
1059
10
HOH
HOH
422
H
HOH
1060
10
HOH
HOH
423
H
HOH
1061
10
HOH
HOH
424
H
HOH
1062
10
HOH
HOH
425
H
HOH
1063
10
HOH
HOH
426
H
HOH
1064
10
HOH
HOH
427
H
HOH
1065
10
HOH
HOH
428
H
HOH
1066
10
HOH
HOH
429
H
HOH
1067
10
HOH
HOH
430
H
HOH
1068
10
HOH
HOH
431
H
HOH
1069
10
HOH
HOH
432
H
HOH
1070
10
HOH
HOH
433
H
HOH
1073
10
HOH
HOH
434
H
HOH
1074
10
HOH
HOH
435
H
HOH
1075
10
HOH
HOH
436
H
HOH
1076
10
HOH
HOH
437
H
HOH
1077
10
HOH
HOH
438
H
HOH
1078
10
HOH
HOH
439
H
HOH
1079
10
HOH
HOH
440
H
HOH
1080
10
HOH
HOH
441
H
HOH
1081
10
HOH
HOH
442
H
HOH
1082
10
HOH
HOH
443
H
HOH
1083
10
HOH
HOH
444
H
HOH
1084
10
HOH
HOH
445
H
HOH
1085
10
HOH
HOH
446
H
HOH
1086
10
HOH
HOH
447
H
HOH
1087
10
HOH
HOH
448
H
HOH
1088
10
HOH
HOH
449
H
HOH
1089
10
HOH
HOH
450
H
HOH
1091
10
HOH
HOH
451
H
HOH
1092
10
HOH
HOH
452
H
HOH
1093
10
HOH
HOH
453
H
HOH
1094
10
HOH
HOH
454
H
HOH
1095
10
HOH
HOH
455
H
HOH
1096
10
HOH
HOH
456
H
HOH
1097
10
HOH
HOH
457
H
HOH
1098
10
HOH
HOH
458
H
HOH
1099
10
HOH
HOH
459
H
HOH
1100
10
HOH
HOH
460
H
HOH
1102
10
HOH
HOH
461
H
HOH
1103
10
HOH
HOH
462
H
HOH
1104
10
HOH
HOH
463
H
HOH
1105
10
HOH
HOH
464
H
HOH
1106
10
HOH
HOH
465
H
HOH
1108
10
HOH
HOH
466
H
HOH
1110
10
HOH
HOH
467
H
HOH
1111
10
HOH
HOH
468
H
HOH
1112
10
HOH
HOH
469
H
HOH
1114
10
HOH
HOH
470
H
HOH
1115
10
HOH
HOH
471
H
HOH
1116
10
HOH
HOH
472
H
HOH
1117
10
HOH
HOH
473
H
HOH
1119
10
HOH
HOH
474
H
HOH
1120
10
HOH
HOH
475
H
HOH
1121
10
HOH
HOH
476
H
HOH
1122
10
HOH
HOH
477
H
HOH
1123
10
HOH
HOH
478
H
HOH
1124
10
HOH
HOH
479
H
HOH
1126
10
HOH
HOH
480
H
HOH
1127
10
HOH
HOH
481
H
HOH
1128
10
HOH
HOH
482
H
HOH
1129
10
HOH
HOH
483
H
HOH
1130
10
HOH
HOH
484
H
HOH
1132
10
HOH
HOH
485
H
HOH
1133
10
HOH
HOH
486
H
HOH
1134
10
HOH
HOH
487
H
HOH
1135
10
HOH
HOH
488
H
HOH
1136
10
HOH
HOH
489
H
HOH
1140
10
HOH
HOH
490
H
HOH
1142
10
HOH
HOH
491
H
HOH
1143
10
HOH
HOH
492
H
HOH
1144
10
HOH
HOH
493
H
HOH
1145
10
HOH
HOH
494
H
HOH
1147
10
HOH
HOH
495
H
HOH
1148
10
HOH
HOH
496
H
HOH
1152
10
HOH
HOH
497
H
HOH
1153
10
HOH
HOH
498
H
HOH
1155
10
HOH
HOH
499
H
HOH
1157
10
HOH
HOH
500
H
HOH
1158
10
HOH
HOH
501
H
HOH
1159
10
HOH
HOH
502
H
HOH
1160
10
HOH
HOH
503
H
HOH
1161
10
HOH
HOH
504
H
HOH
1162
10
HOH
HOH
505
H
HOH
1163
10
HOH
HOH
506
H
HOH
1166
10
HOH
HOH
507
H
HOH
1167
10
HOH
HOH
508
H
HOH
1168
10
HOH
HOH
509
H
HOH
1169
10
HOH
HOH
510
H
HOH
1170
10
HOH
HOH
511
H
HOH
1171
10
HOH
HOH
512
H
HOH
1172
10
HOH
HOH
513
H
HOH
1174
10
HOH
HOH
514
H
HOH
1175
10
HOH
HOH
515
H
HOH
1176
10
HOH
HOH
516
H
HOH
1178
10
HOH
HOH
517
H
HOH
1179
10
HOH
HOH
518
H
HOH
1180
10
HOH
HOH
519
H
HOH
1181
10
HOH
HOH
520
H
HOH
1182
10
HOH
HOH
521
H
HOH
1183
10
HOH
HOH
522
H
HOH
1184
10
HOH
HOH
523
H
HOH
1186
10
HOH
HOH
524
H
HOH
1187
10
HOH
HOH
525
H
HOH
1188
10
HOH
HOH
526
H
HOH
1190
10
HOH
HOH
527
H
HOH
1194
10
HOH
HOH
528
H
HOH
1195
10
HOH
HOH
529
H
HOH
1196
10
HOH
HOH
530
H
HOH
1197
10
HOH
HOH
531
H
HOH
1198
10
HOH
HOH
532
H
HOH
1199
10
HOH
HOH
533
H
HOH
1200
10
HOH
HOH
534
H
HOH
1201
10
HOH
HOH
535
H
HOH
1202
10
HOH
HOH
536
H
HOH
1203
10
HOH
HOH
537
H
HOH
1204
10
HOH
HOH
538
H
HOH
1205
10
HOH
HOH
539
H
HOH
1208
10
HOH
HOH
540
H
HOH
1209
10
HOH
HOH
541
H
HOH
1210
10
HOH
HOH
542
H
HOH
1211
10
HOH
HOH
543
H
HOH
1212
10
HOH
HOH
544
H
HOH
1214
10
HOH
HOH
545
H
HOH
1215
10
HOH
HOH
546
H
HOH
1231
10
HOH
HOH
547
H
HOH
1058
10
HOH
HOH
201
D
HOH
1101
10
HOH
HOH
202
D
HOH
1107
10
HOH
HOH
203
D
HOH
1137
10
HOH
HOH
204
D
HOH
1138
10
HOH
HOH
205
D
HOH
1139
10
HOH
HOH
206
D
HOH
1173
10
HOH
HOH
207
D
HOH
1177
10
HOH
HOH
208
D
HOH
1189
10
HOH
HOH
209
D
HOH
1192
10
HOH
HOH
210
D
HOH
1193
10
HOH
HOH
211
D
HOH
1207
10
HOH
HOH
212
D
HOH
1213
10
HOH
HOH
213
D
HOH
1216
10
HOH
HOH
214
D
HOH
1217
10
HOH
HOH
215
D
HOH
1218
10
HOH
HOH
216
D
HOH
1219
10
HOH
HOH
217
D
HOH
1220
10
HOH
HOH
218
D
HOH
1221
10
HOH
HOH
219
D
HOH
1222
10
HOH
HOH
220
D
HOH
1223
10
HOH
HOH
221
D
HOH
1224
10
HOH
HOH
222
D
HOH
1225
10
HOH
HOH
223
D
HOH
1226
10
HOH
HOH
224
D
HOH
1228
10
HOH
HOH
225
D
HOH
1230
10
HOH
HOH
226
D
n
1
-5
L
n
2
-4
L
n
3
-3
L
n
4
-2
L
n
5
-1
L
n
6
0
L
ALA
1
n
7
B
ALA
1
L
ASP
1
n
8
A
ASP
1
L
CYS
1
n
9
CYS
1
L
GLY
2
n
10
GLY
2
L
LEU
3
n
11
LEU
3
L
ARG
4
n
12
ARG
4
L
PRO
5
n
13
PRO
5
L
LEU
6
n
14
LEU
6
L
PHE
7
n
15
PHE
7
L
GLU
8
n
16
GLU
8
L
LYS
9
n
17
LYS
9
L
LYS
10
n
18
LYS
10
L
SER
11
n
19
SER
11
L
LEU
12
n
20
LEU
12
L
GLU
13
n
21
GLU
13
L
ASP
14
n
22
ASP
14
L
LYS
14
n
23
A
LYS
14
L
THR
14
n
24
B
THR
14
L
GLU
14
n
25
C
GLU
14
L
ARG
14
n
26
D
ARG
14
L
GLU
14
n
27
E
GLU
14
L
LEU
14
n
28
F
LEU
14
L
LEU
14
n
29
G
LEU
14
L
GLU
14
n
30
H
GLU
14
L
SER
14
n
31
I
SER
14
L
TYR
14
n
32
J
TYR
14
L
ILE
14
n
33
K
ILE
14
L
n
34
15
L
n
35
16
L
n
36
17
L
ILE
16
n
1
ILE
16
H
VAL
17
n
2
VAL
17
H
GLU
18
n
3
GLU
18
H
GLY
19
n
4
GLY
19
H
SER
20
n
5
SER
20
H
ASP
21
n
6
ASP
21
H
ALA
22
n
7
ALA
22
H
GLU
23
n
8
GLU
23
H
ILE
24
n
9
ILE
24
H
GLY
25
n
10
GLY
25
H
MET
26
n
11
MET
26
H
SER
27
n
12
SER
27
H
PRO
28
n
13
PRO
28
H
TRP
29
n
14
TRP
29
H
GLN
30
n
15
GLN
30
H
VAL
31
n
16
VAL
31
H
MET
32
n
17
MET
32
H
LEU
33
n
18
LEU
33
H
PHE
34
n
19
PHE
34
H
ARG
35
n
20
ARG
35
H
LYS
36
n
21
LYS
36
H
SER
36
n
22
A
SER
36
H
PRO
37
n
23
PRO
37
H
GLN
38
n
24
GLN
38
H
GLU
39
n
25
GLU
39
H
LEU
40
n
26
LEU
40
H
LEU
41
n
27
LEU
41
H
CYS
42
n
28
CYS
42
H
GLY
43
n
29
GLY
43
H
ALA
44
n
30
ALA
44
H
SER
45
n
31
SER
45
H
LEU
46
n
32
LEU
46
H
ILE
47
n
33
ILE
47
H
SER
48
n
34
SER
48
H
ASP
49
n
35
ASP
49
H
ARG
50
n
36
ARG
50
H
TRP
51
n
37
TRP
51
H
VAL
52
n
38
VAL
52
H
LEU
53
n
39
LEU
53
H
THR
54
n
40
THR
54
H
ALA
55
n
41
ALA
55
H
ALA
56
n
42
ALA
56
H
HIS
57
n
43
HIS
57
H
CYS
58
n
44
CYS
58
H
LEU
59
n
45
LEU
59
H
LEU
60
n
46
LEU
60
H
TYR
60
n
47
A
TYR
60
H
PRO
60
n
48
B
PRO
60
H
PRO
60
n
49
C
PRO
60
H
TRP
60
n
50
D
TRP
60
H
ASP
60
n
51
E
ASP
60
H
LYS
60
n
52
F
LYS
60
H
ASN
60
n
53
G
ASN
60
H
PHE
60
n
54
H
PHE
60
H
THR
60
n
55
I
THR
60
H
GLU
61
n
56
GLU
61
H
ASN
62
n
57
ASN
62
H
ASP
63
n
58
ASP
63
H
LEU
64
n
59
LEU
64
H
LEU
65
n
60
LEU
65
H
VAL
66
n
61
VAL
66
H
ARG
67
n
62
ARG
67
H
ILE
68
n
63
ILE
68
H
GLY
69
n
64
GLY
69
H
LYS
70
n
65
LYS
70
H
HIS
71
n
66
HIS
71
H
SER
72
n
67
SER
72
H
ARG
73
n
68
ARG
73
H
THR
74
n
69
THR
74
H
ARG
75
n
70
ARG
75
H
TYR
76
n
71
TYR
76
H
GLU
77
n
72
GLU
77
H
ARG
77
n
73
A
ARG
77
H
ASN
78
n
74
ASN
78
H
ILE
79
n
75
ILE
79
H
GLU
80
n
76
GLU
80
H
LYS
81
n
77
LYS
81
H
ILE
82
n
78
ILE
82
H
SER
83
n
79
SER
83
H
MET
84
n
80
MET
84
H
LEU
85
n
81
LEU
85
H
GLU
86
n
82
GLU
86
H
LYS
87
n
83
LYS
87
H
ILE
88
n
84
ILE
88
H
TYR
89
n
85
TYR
89
H
ILE
90
n
86
ILE
90
H
HIS
91
n
87
HIS
91
H
PRO
92
n
88
PRO
92
H
ARG
93
n
89
ARG
93
H
TYR
94
n
90
TYR
94
H
ASN
95
n
91
ASN
95
H
TRP
96
n
92
TRP
96
H
ARG
97
n
93
ARG
97
H
GLU
97
n
94
A
GLU
97
H
ASN
98
n
95
ASN
98
H
LEU
99
n
96
LEU
99
H
ASP
100
n
97
ASP
100
H
ARG
101
n
98
ARG
101
H
ASP
102
n
99
ASP
102
H
ILE
103
n
100
ILE
103
H
ALA
104
n
101
ALA
104
H
LEU
105
n
102
LEU
105
H
MET
106
n
103
MET
106
H
LYS
107
n
104
LYS
107
H
LEU
108
n
105
LEU
108
H
LYS
109
n
106
LYS
109
H
LYS
110
n
107
LYS
110
H
PRO
111
n
108
PRO
111
H
VAL
112
n
109
VAL
112
H
ALA
113
n
110
ALA
113
H
PHE
114
n
111
PHE
114
H
SER
115
n
112
SER
115
H
ASP
116
n
113
ASP
116
H
TYR
117
n
114
TYR
117
H
ILE
118
n
115
ILE
118
H
HIS
119
n
116
HIS
119
H
PRO
120
n
117
PRO
120
H
VAL
121
n
118
VAL
121
H
CYS
122
n
119
CYS
122
H
LEU
123
n
120
LEU
123
H
PRO
124
n
121
PRO
124
H
ASP
125
n
122
ASP
125
H
ARG
126
n
123
ARG
126
H
GLU
127
n
124
GLU
127
H
THR
128
n
125
THR
128
H
ALA
129
n
126
ALA
129
H
ALA
129
n
127
A
ALA
129
H
SER
129
n
128
B
SER
129
H
LEU
129
n
129
C
LEU
129
H
LEU
130
n
130
LEU
130
H
GLN
131
n
131
GLN
131
H
ALA
132
n
132
ALA
132
H
GLY
133
n
133
GLY
133
H
TYR
134
n
134
TYR
134
H
LYS
135
n
135
LYS
135
H
GLY
136
n
136
GLY
136
H
ARG
137
n
137
ARG
137
H
VAL
138
n
138
VAL
138
H
THR
139
n
139
THR
139
H
GLY
140
n
140
GLY
140
H
TRP
141
n
141
TRP
141
H
GLY
142
n
142
GLY
142
H
ASN
143
n
143
ASN
143
H
LEU
144
n
144
LEU
144
H
LYS
145
n
145
LYS
145
H
GLU
146
n
146
GLU
146
H
THR
147
n
147
THR
147
H
n
148
A
147
H
n
149
B
147
H
n
150
C
147
H
n
151
D
147
H
n
152
E
147
H
n
153
F
147
H
n
154
G
147
H
n
155
H
147
H
GLN
151
n
156
GLN
151
H
PRO
152
n
157
PRO
152
H
SER
153
n
158
SER
153
H
VAL
154
n
159
VAL
154
H
LEU
155
n
160
LEU
155
H
GLN
156
n
161
GLN
156
H
VAL
157
n
162
VAL
157
H
VAL
158
n
163
VAL
158
H
ASN
159
n
164
ASN
159
H
LEU
160
n
165
LEU
160
H
PRO
161
n
166
PRO
161
H
ILE
162
n
167
ILE
162
H
VAL
163
n
168
VAL
163
H
GLU
164
n
169
GLU
164
H
ARG
165
n
170
ARG
165
H
PRO
166
n
171
PRO
166
H
VAL
167
n
172
VAL
167
H
CYS
168
n
173
CYS
168
H
LYS
169
n
174
LYS
169
H
ASP
170
n
175
ASP
170
H
SER
171
n
176
SER
171
H
THR
172
n
177
THR
172
H
ARG
173
n
178
ARG
173
H
ILE
174
n
179
ILE
174
H
ARG
175
n
180
ARG
175
H
ILE
176
n
181
ILE
176
H
THR
177
n
182
THR
177
H
ASP
178
n
183
ASP
178
H
ASN
179
n
184
ASN
179
H
MET
180
n
185
MET
180
H
PHE
181
n
186
PHE
181
H
CYS
182
n
187
CYS
182
H
ALA
183
n
188
ALA
183
H
GLY
184
n
189
GLY
184
H
TYR
184
n
190
A
TYR
184
H
LYS
185
n
191
LYS
185
H
PRO
186
n
192
PRO
186
H
ASP
186
n
193
A
ASP
186
H
GLU
186
n
194
B
GLU
186
H
GLY
186
n
195
C
GLY
186
H
LYS
186
n
196
D
LYS
186
H
ARG
187
n
197
ARG
187
H
GLY
188
n
198
GLY
188
H
ASP
189
n
199
ASP
189
H
ALA
190
n
200
ALA
190
H
CYS
191
n
201
CYS
191
H
GLU
192
n
202
GLU
192
H
GLY
193
n
203
GLY
193
H
ASP
194
n
204
ASP
194
H
SER
195
n
205
SER
195
H
GLY
196
n
206
GLY
196
H
GLY
197
n
207
GLY
197
H
PRO
198
n
208
PRO
198
H
PHE
199
n
209
PHE
199
H
VAL
200
n
210
VAL
200
H
MET
201
n
211
MET
201
H
LYS
202
n
212
LYS
202
H
SER
203
n
213
SER
203
H
PRO
204
n
214
PRO
204
H
PHE
204
n
215
A
PHE
204
H
ASN
204
n
216
B
ASN
204
H
ASN
205
n
217
ASN
205
H
ARG
206
n
218
ARG
206
H
TRP
207
n
219
TRP
207
H
TYR
208
n
220
TYR
208
H
GLN
209
n
221
GLN
209
H
MET
210
n
222
MET
210
H
GLY
211
n
223
GLY
211
H
ILE
212
n
224
ILE
212
H
VAL
213
n
225
VAL
213
H
SER
214
n
226
SER
214
H
TRP
215
n
227
TRP
215
H
GLY
216
n
228
GLY
216
H
GLU
217
n
229
GLU
217
H
GLY
219
n
230
GLY
219
H
CYS
220
n
231
CYS
220
H
ASP
221
n
232
A
ASP
221
H
ARG
221
n
233
ARG
221
H
ASP
222
n
234
ASP
222
H
GLY
223
n
235
GLY
223
H
LYS
224
n
236
LYS
224
H
TYR
225
n
237
TYR
225
H
GLY
226
n
238
GLY
226
H
PHE
227
n
239
PHE
227
H
TYR
228
n
240
TYR
228
H
THR
229
n
241
THR
229
H
HIS
230
n
242
HIS
230
H
VAL
231
n
243
VAL
231
H
PHE
232
n
244
PHE
232
H
ARG
233
n
245
ARG
233
H
LEU
234
n
246
LEU
234
H
LYS
235
n
247
LYS
235
H
LYS
236
n
248
LYS
236
H
TRP
237
n
249
TRP
237
H
ILE
238
n
250
ILE
238
H
GLN
239
n
251
GLN
239
H
LYS
240
n
252
LYS
240
H
VAL
241
n
253
VAL
241
H
ILE
242
n
254
ILE
242
H
ASP
243
n
255
ASP
243
H
GLN
244
n
256
GLN
244
H
PHE
245
n
257
PHE
245
H
GLY
246
n
258
GLY
246
H
n
259
247
H
DG
1
n
1
DG
1
D
DG
2
n
2
DG
2
D
DT
3
n
3
DT
3
D
DT
4
n
4
DT
4
D
DG
5
n
5
DG
5
D
DG
6
n
6
DG
6
D
DT
7
n
7
DT
7
D
DG
8
n
8
DG
8
D
DT
9
n
9
DT
9
D
DG
10
n
10
DG
10
D
DG
11
n
11
DG
11
D
DT
12
n
12
DT
12
D
DT
13
n
13
DT
13
D
DG
14
n
14
DG
14
D
DG
15
n
15
DG
15
D
author_and_software_defined_assembly
PISA
3
trimeric
3280
-14
14870
A
L
ASP
1
A
OD1
ASP
8
1_555
L
ZN
101
D
ZN
ZN
1_555
H
HIS
119
B
NE2
HIS
116
1_555
112.0
E
H
ASP
60
B
OD1
ASP
51
1_555
H
ZN
304
H
ZN
ZN
1_555
E
H
ASP
60
B
OD2
ASP
51
1_555
55.0
H
ARG
221
B
O
ARG
233
1_555
H
NA
303
G
NA
NA
1_555
H
LYS
224
B
O
LYS
236
1_555
84.6
H
ARG
221
B
O
ARG
233
1_555
H
NA
303
G
NA
NA
1_555
H
HOH
418
M
O
HOH
1_555
107.2
H
LYS
224
B
O
LYS
236
1_555
H
NA
303
G
NA
NA
1_555
H
HOH
418
M
O
HOH
1_555
145.8
H
ARG
221
B
O
ARG
233
1_555
H
NA
303
G
NA
NA
1_555
H
HOH
464
M
O
HOH
1_555
135.0
H
LYS
224
B
O
LYS
236
1_555
H
NA
303
G
NA
NA
1_555
H
HOH
464
M
O
HOH
1_555
65.0
H
HOH
418
M
O
HOH
1_555
H
NA
303
G
NA
NA
1_555
H
HOH
464
M
O
HOH
1_555
85.6
D
DG
1
C
O6
DG
1
1_555
D
K
101
K
K
K
1_555
D
DG
2
C
O6
DG
2
1_555
68.2
D
DG
1
C
O6
DG
1
1_555
D
K
101
K
K
K
1_555
D
DG
5
C
O6
DG
5
1_555
116.6
D
DG
2
C
O6
DG
2
1_555
D
K
101
K
K
K
1_555
D
DG
5
C
O6
DG
5
1_555
65.3
D
DG
1
C
O6
DG
1
1_555
D
K
101
K
K
K
1_555
D
DG
6
C
O6
DG
6
1_555
76.1
D
DG
2
C
O6
DG
2
1_555
D
K
101
K
K
K
1_555
D
DG
6
C
O6
DG
6
1_555
100.3
D
DG
5
C
O6
DG
5
1_555
D
K
101
K
K
K
1_555
D
DG
6
C
O6
DG
6
1_555
72.6
D
DG
1
C
O6
DG
1
1_555
D
K
101
K
K
K
1_555
D
DG
10
C
O6
DG
10
1_555
118.7
D
DG
2
C
O6
DG
2
1_555
D
K
101
K
K
K
1_555
D
DG
10
C
O6
DG
10
1_555
164.5
D
DG
5
C
O6
DG
5
1_555
D
K
101
K
K
K
1_555
D
DG
10
C
O6
DG
10
1_555
99.8
D
DG
6
C
O6
DG
6
1_555
D
K
101
K
K
K
1_555
D
DG
10
C
O6
DG
10
1_555
69.8
D
DG
1
C
O6
DG
1
1_555
D
K
101
K
K
K
1_555
D
DG
11
C
O6
DG
11
1_555
165.9
D
DG
2
C
O6
DG
2
1_555
D
K
101
K
K
K
1_555
D
DG
11
C
O6
DG
11
1_555
108.9
D
DG
5
C
O6
DG
5
1_555
D
K
101
K
K
K
1_555
D
DG
11
C
O6
DG
11
1_555
72.2
D
DG
6
C
O6
DG
6
1_555
D
K
101
K
K
K
1_555
D
DG
11
C
O6
DG
11
1_555
117.8
D
DG
10
C
O6
DG
10
1_555
D
K
101
K
K
K
1_555
D
DG
11
C
O6
DG
11
1_555
67.9
D
DG
1
C
O6
DG
1
1_555
D
K
101
K
K
K
1_555
D
DG
14
C
O6
DG
14
1_555
100.6
D
DG
2
C
O6
DG
2
1_555
D
K
101
K
K
K
1_555
D
DG
14
C
O6
DG
14
1_555
66.7
D
DG
5
C
O6
DG
5
1_555
D
K
101
K
K
K
1_555
D
DG
14
C
O6
DG
14
1_555
98.1
D
DG
6
C
O6
DG
6
1_555
D
K
101
K
K
K
1_555
D
DG
14
C
O6
DG
14
1_555
166.7
D
DG
10
C
O6
DG
10
1_555
D
K
101
K
K
K
1_555
D
DG
14
C
O6
DG
14
1_555
122.1
D
DG
11
C
O6
DG
11
1_555
D
K
101
K
K
K
1_555
D
DG
14
C
O6
DG
14
1_555
66.3
D
DG
1
C
O6
DG
1
1_555
D
K
101
K
K
K
1_555
D
DG
15
C
O6
DG
15
1_555
75.3
D
DG
2
C
O6
DG
2
1_555
D
K
101
K
K
K
1_555
D
DG
15
C
O6
DG
15
1_555
123.1
D
DG
5
C
O6
DG
5
1_555
D
K
101
K
K
K
1_555
D
DG
15
C
O6
DG
15
1_555
168.1
D
DG
6
C
O6
DG
6
1_555
D
K
101
K
K
K
1_555
D
DG
15
C
O6
DG
15
1_555
111.5
D
DG
10
C
O6
DG
10
1_555
D
K
101
K
K
K
1_555
D
DG
15
C
O6
DG
15
1_555
72.3
D
DG
11
C
O6
DG
11
1_555
D
K
101
K
K
K
1_555
D
DG
15
C
O6
DG
15
1_555
96.4
D
DG
14
C
O6
DG
14
1_555
D
K
101
K
K
K
1_555
D
DG
15
C
O6
DG
15
1_555
79.5
G
H
ASN
60
GLYCOSYLATION SITE
B
ASN
53
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
SER
20
B
N
SER
5
H
O
VAL
157
B
O
VAL
162
H
O
LEU
160
B
O
LEU
165
H
N
GLY
136
B
N
GLY
136
H
N
ARG
137
B
N
ARG
137
H
O
VAL
200
B
O
VAL
210
H
N
MET
201
B
N
MET
211
H
O
TYR
208
B
O
TYR
220
H
N
TRP
215
B
N
TRP
227
H
O
PHE
227
B
O
PHE
239
H
O
TYR
228
B
O
TYR
240
H
N
PHE
181
B
N
PHE
186
H
N
ARG
35
B
N
ARG
20
H
O
GLU
39
B
O
GLU
25
H
N
SER
45
B
N
SER
31
H
O
LEU
53
B
O
LEU
39
H
N
VAL
52
B
N
VAL
38
H
O
MET
106
B
O
MET
103
H
O
LEU
105
B
O
LEU
102
H
N
TYR
89
B
N
TYR
85
H
O
SER
83
B
O
SER
79
H
N
VAL
66
B
N
VAL
61
H
O
LEU
65
B
O
LEU
60
H
N
PHE
34
B
N
PHE
19
A
H
N
TYR
60
B
N
TYR
47
F
H
O
LYS
60
B
O
LYS
52
1
L
THR
-5
A
THR
1
1
Y
1
L
PHE
-4
A
PHE
2
1
Y
1
L
GLY
-3
A
GLY
3
1
Y
1
L
SER
-2
A
SER
4
1
Y
1
L
GLY
-1
A
GLY
5
1
Y
1
L
GLU
0
A
GLU
6
1
Y
1
L
ASP
15
A
ASP
34
1
Y
1
L
GLY
16
A
GLY
35
1
Y
1
L
ARG
17
A
ARG
36
1
Y
A
1
H
TRP
147
B
TRP
148
1
Y
B
1
H
THR
147
B
THR
149
1
Y
C
1
H
ALA
147
B
ALA
150
1
Y
D
1
H
ASN
147
B
ASN
151
1
Y
E
1
H
VAL
147
B
VAL
152
1
Y
F
1
H
GLY
147
B
GLY
153
1
Y
G
1
H
LYS
147
B
LYS
154
1
Y
H
1
H
GLY
147
B
GLY
155
1
Y
1
H
GLU
247
B
GLU
259
1
Y
1
D
D
O
O
HOH
HOH
207
217
2.17
1
H
H
OG
O2
SER
0G6
195
301
2.19
1
3.40
0.50
120.30
123.70
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
75
75
75
N
1
-3.28
0.50
120.30
117.02
H
H
H
NE
CZ
NH2
ARG
ARG
ARG
126
126
126
N
1
L
PHE
7
-126.09
-82.04
A
1
H
TYR
60
-159.37
85.01
G
1
H
ASN
60
-162.50
83.36
1
H
ASN
98
-143.12
17.85
1
H
PRO
186
-26.44
-22.44
A
1
H
ASP
186
-163.68
34.42
B
1
H
GLU
186
-66.04
17.62
0.226
0.174
0.195
0.195
2.05
50.00
18499
21478
19447
RANDOM
1
0.00
0.00
MOLECULAR REPLACEMENT
PDB ENTRY 3QLP AND 1HAO
Engh & Huber
2.05
50.00
183
2795
50
315
2247
2.05
50.00
4DII
20850
20850
0.000
0.000
1
94.5
2.05
2.12
1
84.5
data collection
CrystalClear
phasing
PHASES
refinement
CNS
data reduction
HKL-2000
data scaling
HKL-2000
X-ray structure of the complex between human alpha thrombin and thrombin binding aptamer in the presence of potassium ions
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
4
N
N
8
N
N
8
N
N
9
N
N
10
N
N
10
N
N
10
N
N
1:1 protein-DNA aptamer complex
L
PHE
7
A
PHE
15
HELX_P
L
SER
11
A
SER
19
5
1
5
L
THR
14
A
THR
24
HELX_P
L
TYR
14
A
TYR
32
1
2
9
B
J
H
ALA
55
B
ALA
41
HELX_P
H
LEU
59
B
LEU
45
1
3
5
H
PRO
60
B
PRO
48
HELX_P
H
ASP
60
B
ASP
51
5
4
4
B
E
H
THR
60
B
THR
55
HELX_P
H
ASN
62
B
ASN
57
5
5
3
I
H
ASP
125
B
ASP
122
HELX_P
H
LEU
130
B
LEU
130
1
6
9
H
GLU
164
B
GLU
169
HELX_P
H
SER
171
B
SER
176
1
7
8
H
LEU
234
B
LEU
246
HELX_P
H
GLY
246
B
GLY
258
1
8
13
disulf
2.073
L
CYS
1
A
SG
CYS
9
1_555
H
CYS
122
B
SG
CYS
119
1_555
disulf
2.044
H
CYS
42
B
SG
CYS
28
1_555
H
CYS
58
B
SG
CYS
44
1_555
disulf
2.031
H
CYS
168
B
SG
CYS
173
1_555
H
CYS
182
B
SG
CYS
187
1_555
disulf
2.038
H
CYS
191
B
SG
CYS
201
1_555
H
CYS
220
B
SG
CYS
231
1_555
covale
1.395
one
H
HIS
57
B
NE2
HIS
43
1_555
H
0G6
301
E
C3
0G6
1_555
covale
1.447
one
G
N-Glycosylation
H
ASN
60
B
ND2
ASN
53
1_555
H
NAG
302
F
C1
NAG
1_555
covale
1.360
none
H
SER
195
B
OG
SER
205
1_555
H
0G6
301
E
C2
0G6
1_555
metalc
1.920
A
L
ASP
1
A
OD1
ASP
8
1_555
L
ZN
101
D
ZN
ZN
1_555
metalc
2.179
L
ZN
101
D
ZN
ZN
1_555
H
HIS
119
B
NE2
HIS
116
1_555
metalc
2.208
E
H
ASP
60
B
OD1
ASP
51
1_555
H
ZN
304
H
ZN
ZN
1_555
metalc
2.587
E
H
ASP
60
B
OD2
ASP
51
1_555
H
ZN
304
H
ZN
ZN
1_555
metalc
2.541
H
ARG
221
B
O
ARG
233
1_555
H
NA
303
G
NA
NA
1_555
metalc
2.676
H
LYS
224
B
O
LYS
236
1_555
H
NA
303
G
NA
NA
1_555
metalc
2.542
H
NA
303
G
NA
NA
1_555
H
HOH
418
M
O
HOH
1_555
metalc
2.599
H
NA
303
G
NA
NA
1_555
H
HOH
464
M
O
HOH
1_555
metalc
2.689
D
DG
1
C
O6
DG
1
1_555
D
K
101
K
K
K
1_555
metalc
2.951
D
DG
2
C
O6
DG
2
1_555
D
K
101
K
K
K
1_555
metalc
2.726
D
DG
5
C
O6
DG
5
1_555
D
K
101
K
K
K
1_555
metalc
2.924
D
DG
6
C
O6
DG
6
1_555
D
K
101
K
K
K
1_555
metalc
2.901
D
DG
10
C
O6
DG
10
1_555
D
K
101
K
K
K
1_555
metalc
2.820
D
DG
11
C
O6
DG
11
1_555
D
K
101
K
K
K
1_555
metalc
2.714
D
DG
14
C
O6
DG
14
1_555
D
K
101
K
K
K
1_555
metalc
2.807
D
DG
15
C
O6
DG
15
1_555
D
K
101
K
K
K
1_555
hydrog
TYPE_6_PAIR
D
DG
1
C
N1
DG
1
1_555
D
DG
6
C
O6
DG
6
1_555
hydrog
TYPE_6_PAIR
D
DG
1
C
N2
DG
1
1_555
D
DG
6
C
N7
DG
6
1_555
hydrog
TYPE_6_PAIR
D
DG
1
C
N7
DG
1
1_555
D
DG
15
C
N2
DG
15
1_555
hydrog
TYPE_6_PAIR
D
DG
1
C
O6
DG
1
1_555
D
DG
15
C
N1
DG
15
1_555
hydrog
TYPE_6_PAIR
D
DG
2
C
N7
DG
2
1_555
D
DG
5
C
N2
DG
5
1_555
hydrog
TYPE_6_PAIR
D
DG
2
C
O6
DG
2
1_555
D
DG
5
C
N1
DG
5
1_555
hydrog
TYPE_6_PAIR
D
DG
2
C
N1
DG
2
1_555
D
DG
14
C
O6
DG
14
1_555
hydrog
TYPE_6_PAIR
D
DG
2
C
N2
DG
2
1_555
D
DG
14
C
N7
DG
14
1_555
hydrog
TYPE_6_PAIR
D
DG
5
C
N7
DG
5
1_555
D
DG
11
C
N2
DG
11
1_555
hydrog
TYPE_6_PAIR
D
DG
5
C
O6
DG
5
1_555
D
DG
11
C
N1
DG
11
1_555
hydrog
TYPE_6_PAIR
D
DG
6
C
N1
DG
6
1_555
D
DG
10
C
O6
DG
10
1_555
hydrog
TYPE_6_PAIR
D
DG
6
C
N2
DG
6
1_555
D
DG
10
C
N7
DG
10
1_555
hydrog
TYPE_6_PAIR
D
DG
10
C
N1
DG
10
1_555
D
DG
15
C
O6
DG
15
1_555
hydrog
TYPE_6_PAIR
D
DG
10
C
N2
DG
10
1_555
D
DG
15
C
N7
DG
15
1_555
hydrog
TYPE_6_PAIR
D
DG
11
C
N7
DG
11
1_555
D
DG
14
C
N2
DG
14
1_555
hydrog
TYPE_6_PAIR
D
DG
11
C
O6
DG
11
1_555
D
DG
14
C
N1
DG
14
1_555
hydrog
DT-DG MISPAIR
D
DT
13
C
O2
DT
13
1_555
D
DG
14
C
N1
DG
14
1_555
HYDROLASE/HYDROLASE INHIBITOR/DNA
protein-DNA complex, serine protease, blood coagulation, aptamer, hydrolase-hydrolase inhibitor-DNA complex, serine protease fold, DNA aptamer, blood, G-quadruplex
H
SER
36
B
SER
22
A
1
H
PRO
37
B
PRO
23
0.10
THRB_HUMAN
UNP
1
328
P00734
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
THRB_HUMAN
UNP
2
364
P00734
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
4DII
PDB
3
1
4DII
GGTTGGTGTGGTTGG
328
363
4DII
-5
17
P00734
L
1
1
36
364
622
4DII
16
247
P00734
H
2
1
259
1
15
4DII
1
15
4DII
D
3
1
15
7
7
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
SER
20
B
SER
5
H
ASP
21
B
ASP
6
H
GLN
156
B
GLN
161
H
PRO
161
B
PRO
166
H
LYS
135
B
LYS
135
H
GLY
140
B
GLY
140
H
PRO
198
B
PRO
208
H
LYS
202
B
LYS
212
H
TRP
207
B
TRP
219
H
TRP
215
B
TRP
227
H
GLY
226
B
GLY
238
H
HIS
230
B
HIS
242
H
MET
180
B
MET
185
H
ALA
183
B
ALA
188
H
GLN
30
B
GLN
15
H
ARG
35
B
ARG
20
H
GLU
39
B
GLU
25
H
LEU
46
B
LEU
32
H
TRP
51
B
TRP
37
H
THR
54
B
THR
40
H
ALA
104
B
ALA
101
H
LEU
108
B
LEU
105
H
LYS
81
B
LYS
77
H
ILE
90
B
ILE
86
H
LEU
64
B
LEU
59
H
ILE
68
B
ILE
63
H
GLN
30
B
GLN
15
H
ARG
35
B
ARG
20
H
LEU
60
B
LEU
46
H
TYR
60
B
TYR
47
A
H
LYS
60
B
LYS
52
H
ASN
60
B
ASN
53
F
G
1
P 1