0.011912 0.000000 0.000000 0.000000 0.011912 0.000000 0.000000 0.000000 0.005752 0.00000 0.00000 0.00000 Wojciechowski, M. Czapinska, H. Bochtler, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 83.950 83.950 173.840 C10 H16 N3 O7 P 321.224 n 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H13 F N3 O7 P 325.188 n 5-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C14 H20 N6 O5 S 384.411 n S-ADENOSYL-L-HOMOCYSTEINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N C N 3 N N N 4 N C N 5 N C N 6 N C N 7 N C N 8 N O N 9 N N N 10 R C N 11 N C N 12 S C N 13 R C N 14 N O N 15 N O N 16 N C N 17 N O N 18 N P N 19 N O N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 N C N 122 R C N 123 N N N 124 N C N 125 N O N 126 N N N 127 N C N 128 N N N 129 N C N 130 N C N 131 N F N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N N N 146 R C N 147 N C N 148 N O N 149 N C N 150 N S N 151 N O N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N P N 161 N O N 162 N O N 163 N O N 164 N C N 165 R C N 166 N O N 167 S C N 168 N O N 169 N C N 170 R C Y 171 N N Y 172 N C Y 173 N N Y 174 N C Y 175 N C N 176 N N Y 177 N N Y 178 N C Y 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N N N 213 N C N 214 N C N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N O N 230 N P N 231 N O N 232 N O N 233 N O N 234 N C N 235 R C N 236 N O N 237 S C N 238 N O N 239 N C N 240 R C Y 241 N N Y 242 N C Y 243 N N Y 244 N C N 245 N C N 246 N O N 247 N N N 248 N C N 249 N N N 250 N N Y 251 N C N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N O N 267 N P N 268 N O N 269 N O N 270 N O N 271 N C N 272 R C N 273 N O N 274 S C N 275 N O N 276 N C N 277 R C N 278 N N N 279 N C N 280 N O N 281 N N N 282 N C N 283 N O N 284 N C N 285 N C N 286 N C N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 N C N 307 N C N 308 N C N 309 N O N 310 N N N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C N 327 N C N 328 N C N 329 N O N 330 N O N 331 N O N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 N C N 343 N C N 344 N O N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N C N 352 N O N 353 N C N 354 N O N 355 N C N 356 N O N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N N N 366 S C N 367 N C N 368 N O N 369 N C Y 370 N C Y 371 N N Y 372 N C Y 373 N C Y 374 N N N 375 N O N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N O N 387 N H N 388 N H N 389 N N N 390 S C N 391 N C N 392 N O N 393 S C N 394 N C N 395 N C N 396 N C N 397 N O N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N N N 412 S C N 413 N C N 414 N O N 415 N C N 416 N C N 417 N C N 418 N C N 419 N O N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N C N 439 N C N 440 N C N 441 N N N 442 N O N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N N N 459 S C N 460 N C N 461 N O N 462 N C N 463 N C N 464 N S N 465 N C N 466 N O N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N N N 479 S C N 480 N C N 481 N O N 482 N C Y 483 N C Y 484 N C Y 485 N C Y 486 N C Y 487 N C Y 488 N C N 489 N O N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N N N 502 S C N 503 N C N 504 N O N 505 N C N 506 N C N 507 N C N 508 N O N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N N N 519 S C N 520 N C N 521 N C N 522 N S N 523 N C N 524 N O N 525 N O N 526 N C N 527 S C N 528 N O N 529 S C N 530 N O N 531 R C N 532 N O N 533 R C Y 534 N N Y 535 N C Y 536 N N Y 537 N C Y 538 N C N 539 N N Y 540 N N Y 541 N C Y 542 N N Y 543 N C N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 557 N H N 558 N H N 559 N H N 560 N H N 561 N H N 562 N H N 563 N H N 564 N N N 565 S C N 566 N C N 567 N O N 568 N C N 569 N O N 570 N O N 571 N H N 572 N H N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N N N 579 S C N 580 N C N 581 N O N 582 R C N 583 N O N 584 N C N 585 N O N 586 N H N 587 N H N 588 N H N 589 N H N 590 N H N 591 N H N 592 N H N 593 N H N 594 N H N 595 N N N 596 S C N 597 N C N 598 N O N 599 N C Y 600 N C Y 601 N C Y 602 N C Y 603 N N Y 604 N C Y 605 N C Y 606 N C Y 607 N C Y 608 N C N 609 N O N 610 N H N 611 N H N 612 N H N 613 N H N 614 N H N 615 N H N 616 N H N 617 N H N 618 N H N 619 N H N 620 N H N 621 N H N 622 N N N 623 S C N 624 N C N 625 N O N 626 N C Y 627 N C Y 628 N C Y 629 N C Y 630 N C Y 631 N C Y 632 N C N 633 N O N 634 N O N 635 N H N 636 N H N 637 N H N 638 N H N 639 N H N 640 N H N 641 N H N 642 N H N 643 N H N 644 N H N 645 N H N 646 N N N 647 S C N 648 N C N 649 N O N 650 N C N 651 N C N 652 N C N 653 N O N 654 N H N 655 N H N 656 N H N 657 N H N 658 N H N 659 N H N 660 N H N 661 N H N 662 N H N 663 N H N 664 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N doub N 7 N sing N 8 N sing N 9 N sing N 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing Y 184 N sing Y 185 N doub N 186 N sing Y 187 N doub N 188 N sing N 189 N sing Y 190 N sing Y 191 N doub N 192 N sing Y 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N doub N 220 N sing N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N doub N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing Y 252 N sing Y 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing Y 258 N doub N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing Y 375 N sing Y 376 N doub Y 377 N doub N 378 N sing Y 379 N sing N 380 N sing Y 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N doub N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N doub N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N doub N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N doub N 479 N sing N 480 N sing N 481 N sing N 482 N sing Y 483 N doub Y 484 N sing Y 485 N sing N 486 N sing Y 487 N doub N 488 N sing Y 489 N doub N 490 N sing Y 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N doub N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N doub N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing Y 545 N sing Y 546 N sing Y 547 N doub N 548 N sing Y 549 N sing Y 550 N sing Y 551 N doub N 552 N sing Y 553 N doub N 554 N sing N 555 N sing Y 556 N sing Y 557 N doub N 558 N sing Y 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N sing N 565 N sing N 566 N doub N 567 N sing N 568 N sing N 569 N sing N 570 N sing N 571 N sing N 572 N sing N 573 N sing N 574 N sing N 575 N sing N 576 N sing N 577 N sing N 578 N sing N 579 N doub N 580 N sing N 581 N sing N 582 N sing N 583 N sing N 584 N sing N 585 N sing N 586 N sing N 587 N sing N 588 N sing N 589 N sing N 590 N sing N 591 N sing N 592 N sing N 593 N sing N 594 N sing N 595 N doub N 596 N sing N 597 N sing N 598 N sing N 599 N sing Y 600 N doub Y 601 N sing Y 602 N sing N 603 N sing Y 604 N doub Y 605 N sing Y 606 N sing N 607 N sing Y 608 N sing Y 609 N doub N 610 N sing Y 611 N doub N 612 N sing Y 613 N sing N 614 N sing N 615 N sing N 616 N sing N 617 N sing N 618 N sing N 619 N sing N 620 N sing N 621 N sing N 622 N sing N 623 N doub N 624 N sing N 625 N sing N 626 N sing N 627 N sing Y 628 N doub Y 629 N sing Y 630 N sing N 631 N sing Y 632 N doub N 633 N sing Y 634 N doub N 635 N sing Y 636 N sing N 637 N sing N 638 N sing N 639 N sing N 640 N sing N 641 N sing N 642 N sing N 643 N sing N 644 N sing N 645 N sing N 646 N sing N 647 N doub N 648 N sing N 649 N sing N 650 N sing N 651 N sing N 652 N sing N 653 N sing N 654 N sing N 655 N sing N 656 N sing N 657 N sing N 658 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 110 105 110 10.1073/pnas.1207986110 23248272 CpG underrepresentation and the bacterial CpG-specific DNA methyltransferase M.MpeI. 2013 10.2210/pdb4dkj/pdb pdb_00004dkj 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 BENT MIRRORS CCD 2010-12-05 ADSC QUANTUM 315 DOUBLE CRYSTAL MONOCHROMATOR SINGLE WAVELENGTH M x-ray 1 0.97949 1.0 I02 Diamond 0.97949 SYNCHROTRON DIAMOND BEAMLINE I02 47310.082 Cytosine-specific methyltransferase 2.1.1.37 S295P 1 man polymer 4267.773 DNA (5'-D(*CP*CP*AP*CP*AP*TP*GP*(C37)P*GP*CP*TP*GP*AP*A)-3') 1 syn polymer 4325.829 DNA (5'-D(*GP*TP*TP*CP*AP*GP*(5CM)P*GP*CP*AP*TP*GP*TP*G)-3') 1 syn polymer 384.411 S-ADENOSYL-L-HOMOCYSTEINE 1 syn non-polymer 92.094 GLYCEROL 1 syn non-polymer 18.015 water 267 nat water no no MNSNKDKIKVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDS KMPISEYGIKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFPKNIDIFTYSFPCQDLSVQGLQKGIDKELNTRSGLLWE IERILEEIKNSFSKEEMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDY LEKTGFKFKELEKVKNPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRPLKNYTTFNSENYVYNINGIGPTLTA SGANSRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNEELEHHH HHH MNSNKDKIKVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDS KMPISEYGIKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFPKNIDIFTYSFPCQDLSVQGLQKGIDKELNTRSGLLWE IERILEEIKNSFSKEEMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDY LEKTGFKFKELEKVKNPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRPLKNYTTFNSENYVYNINGIGPTLTA SGANSRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNEELEHHH HHH A polypeptide(L) no yes (DC)(DC)(DA)(DC)(DA)(DT)(DG)(C37)(DG)(DC)(DT)(DG)(DA)(DA) CCACATGCGCTGAA B polydeoxyribonucleotide no yes (DG)(DT)(DT)(DC)(DA)(DG)(5CM)(DG)(DC)(DA)(DT)(DG)(DT)(DG) GTTCAGCGCATGTG C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HF-2 sample MYPE4940 272633 Mycoplasma penetrans 562 Escherichia coli ER2566 PLASMID PET28A 1 2.74 55.09 VAPOR DIFFUSION, SITTING DROP 5.6 10% PEG 3350, 150 mM NaCl, 50 mM sodium. For cryoprotection glycerol was added to 25% v/v, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 294K 294 -3.130 1 19 B 2 C 14 2.401 B_DC2:DG14_C 1 -10.378 0.234 0.248 -0.119 2.160 1 20 B 3 C 13 0.878 B_DA3:DT13_C 2 -5.522 0.022 -0.048 -0.110 6.236 1 19 B 4 C 12 -1.023 B_DC4:DG12_C 3 -16.399 0.701 0.054 -0.334 -5.994 1 20 B 5 C 11 3.778 B_DA5:DT11_C 4 -5.041 -0.046 -0.057 -0.062 3.733 1 20 B 6 C 10 4.475 B_DT6:DA10_C 5 -5.629 -0.124 -0.084 -0.072 9.839 1 19 B 7 C 9 -0.095 B_DG7:DC9_C 6 2.581 -0.277 0.085 -0.112 -8.112 1 19 B 9 C 7 -0.500 B_DG9:5CM7_C 7 2.721 -0.535 -0.361 -0.125 -10.198 1 19 B 10 C 6 2.876 B_DC10:DG6_C 8 -6.638 0.090 0.435 -0.029 -4.330 1 20 B 11 C 5 1.639 B_DT11:DA5_C 9 -13.472 0.031 0.237 -0.075 -6.147 1 19 B 12 C 4 -2.061 B_DG12:DC4_C 10 -6.685 -0.101 -0.122 -0.179 5.415 1 20 B 13 C 3 3.587 B_DA13:DT3_C 11 -10.974 0.077 0.325 -0.020 10.302 1 20 B 14 C 2 4.126 B_DA14:DT2_C 12 -10.320 0.185 0.207 -0.021 2.720 32.520 B B 2 3 17.953 C C 14 13 3.108 9.887 -0.475 -0.636 BB_DC2DA3:DT13DG14_CC 1 3.146 -5.712 30.863 -2.718 1.351 3.064 38.637 B B 3 4 6.455 C C 13 12 3.189 4.261 0.455 -0.783 BB_DA3DC4:DG12DT13_CC 2 -1.848 2.799 38.367 -1.687 -0.906 2.775 25.700 B B 4 5 24.168 C C 12 11 3.510 10.442 -0.553 -1.001 BB_DC4DA5:DT11DG12_CC 3 1.572 -3.638 23.464 -5.206 1.689 2.780 25.212 B B 5 6 19.983 C C 11 10 3.065 8.554 0.127 -0.332 BB_DA5DT6:DA10DT11_CC 4 0.592 -1.382 23.731 -3.066 -0.132 3.412 40.636 B B 6 7 4.717 C C 10 9 3.367 3.273 -0.071 0.716 BB_DT6DG7:DC9DA10_CC 5 -0.332 0.478 40.509 0.653 0.064 3.548 35.906 B B 9 10 -1.849 C C 7 6 3.476 -1.137 -0.670 -0.677 BB_DG9DC10:DG65CM7_CC 6 -4.165 6.771 35.654 -0.923 0.446 3.105 30.679 B B 10 11 9.122 C C 6 5 3.134 4.802 -0.381 0.327 BB_DC10DT11:DA5DG6_CC 7 2.599 -4.938 30.200 -0.291 1.212 2.974 46.783 B B 11 12 -7.594 C C 5 4 3.339 -6.015 -0.221 2.806 BB_DT11DG12:DC4DA5_CC 8 -0.254 0.320 46.415 4.019 0.258 3.181 36.610 B B 12 13 4.219 C C 4 3 3.064 2.631 -0.338 1.684 BB_DG12DA13:DT3DC4_CC 9 -7.320 11.736 35.802 2.332 -0.433 3.193 32.520 B B 13 14 12.815 C C 3 2 3.204 7.121 0.082 0.300 BB_DA13DA14:DT2DT3_CC 10 -0.260 0.468 31.750 -0.698 -0.192 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Database references Database references Data collection Database references Derived calculations Refinement description 1 0 2012-12-05 1 1 2012-12-19 1 2 2013-01-02 1 3 2013-01-16 1 4 2023-09-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal structure of mouse DNMT1(650-1602) in complex with DNA Crystal structure of mouse DNMT1(731-1602) in the free state Crystal structure of human DNMT1(646-1600) in complex with DNA COVALENT TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE, DNA AND S-ADENOSYL-L-HOMOCYSTEINE HHAI DNA METHYLTRANSFERASE COMPLEX WITH OLIGONUCLEOTIDE CONTAINING 2-AMINOPURINE OPPOSITE TO THE TARGET BASE (GCGC:GMPC) AND SAH Structure of mouse DNMT1 (731-1602) bound to hemimethylated CpG DNA RCSB Y RCSB 2012-02-03 REL REL SAH S-ADENOSYL-L-HOMOCYSTEINE GOL GLYCEROL HOH water AUTHORS STATE THAT THESE ARE NATURAL STRAIN VARIATIONS. 2C7P PDB entry 2C7P PDB experimental model SAH 1 4 SAH SAH 501 A GOL 2 5 GOL GOL 502 A HOH 2 6 HOH HOH 601 A HOH 3 6 HOH HOH 602 A HOH 4 6 HOH HOH 603 A HOH 5 6 HOH HOH 604 A HOH 7 6 HOH HOH 605 A HOH 8 6 HOH HOH 606 A HOH 9 6 HOH HOH 607 A HOH 10 6 HOH HOH 608 A HOH 11 6 HOH HOH 609 A HOH 12 6 HOH HOH 610 A HOH 13 6 HOH HOH 611 A HOH 15 6 HOH HOH 612 A HOH 16 6 HOH HOH 613 A HOH 17 6 HOH HOH 614 A HOH 18 6 HOH HOH 615 A HOH 19 6 HOH HOH 616 A HOH 20 6 HOH HOH 617 A HOH 21 6 HOH HOH 618 A HOH 22 6 HOH HOH 619 A HOH 23 6 HOH HOH 620 A HOH 24 6 HOH HOH 621 A HOH 25 6 HOH HOH 622 A HOH 26 6 HOH HOH 623 A HOH 27 6 HOH HOH 624 A HOH 28 6 HOH HOH 625 A HOH 29 6 HOH HOH 626 A HOH 30 6 HOH HOH 627 A HOH 31 6 HOH HOH 628 A HOH 32 6 HOH HOH 629 A HOH 33 6 HOH HOH 630 A HOH 34 6 HOH HOH 631 A HOH 37 6 HOH HOH 632 A HOH 38 6 HOH HOH 633 A HOH 39 6 HOH HOH 634 A HOH 40 6 HOH HOH 635 A HOH 41 6 HOH HOH 636 A HOH 42 6 HOH HOH 637 A HOH 43 6 HOH HOH 638 A HOH 44 6 HOH HOH 639 A HOH 45 6 HOH HOH 640 A HOH 46 6 HOH HOH 641 A HOH 47 6 HOH HOH 642 A HOH 48 6 HOH HOH 643 A HOH 49 6 HOH HOH 644 A HOH 50 6 HOH HOH 645 A HOH 51 6 HOH HOH 646 A HOH 52 6 HOH HOH 647 A HOH 53 6 HOH HOH 648 A HOH 55 6 HOH HOH 649 A HOH 56 6 HOH HOH 650 A HOH 57 6 HOH HOH 651 A HOH 58 6 HOH HOH 652 A HOH 59 6 HOH HOH 653 A HOH 60 6 HOH HOH 654 A HOH 61 6 HOH HOH 655 A HOH 62 6 HOH HOH 656 A HOH 63 6 HOH HOH 657 A HOH 64 6 HOH HOH 658 A HOH 65 6 HOH HOH 659 A HOH 66 6 HOH HOH 660 A HOH 67 6 HOH HOH 661 A HOH 68 6 HOH HOH 662 A HOH 71 6 HOH HOH 663 A HOH 72 6 HOH HOH 664 A HOH 74 6 HOH HOH 665 A HOH 75 6 HOH HOH 666 A HOH 76 6 HOH HOH 667 A HOH 77 6 HOH HOH 668 A HOH 78 6 HOH HOH 669 A HOH 79 6 HOH HOH 670 A HOH 80 6 HOH HOH 671 A HOH 81 6 HOH HOH 672 A HOH 82 6 HOH HOH 673 A HOH 83 6 HOH HOH 674 A HOH 84 6 HOH HOH 675 A HOH 86 6 HOH HOH 676 A HOH 87 6 HOH HOH 677 A HOH 88 6 HOH HOH 678 A HOH 90 6 HOH HOH 679 A HOH 91 6 HOH HOH 680 A HOH 92 6 HOH HOH 681 A HOH 93 6 HOH HOH 682 A HOH 94 6 HOH HOH 683 A HOH 97 6 HOH HOH 684 A HOH 98 6 HOH HOH 685 A HOH 99 6 HOH HOH 686 A HOH 100 6 HOH HOH 687 A HOH 101 6 HOH HOH 688 A HOH 102 6 HOH HOH 689 A HOH 103 6 HOH HOH 690 A HOH 104 6 HOH HOH 691 A HOH 106 6 HOH HOH 692 A HOH 108 6 HOH HOH 693 A HOH 109 6 HOH HOH 694 A HOH 110 6 HOH HOH 695 A HOH 111 6 HOH HOH 696 A HOH 112 6 HOH HOH 697 A HOH 113 6 HOH HOH 698 A HOH 115 6 HOH HOH 699 A HOH 116 6 HOH HOH 700 A HOH 118 6 HOH HOH 701 A HOH 119 6 HOH HOH 702 A HOH 120 6 HOH HOH 703 A HOH 123 6 HOH HOH 704 A HOH 124 6 HOH HOH 705 A HOH 125 6 HOH HOH 706 A HOH 126 6 HOH HOH 707 A HOH 128 6 HOH HOH 708 A HOH 129 6 HOH HOH 709 A HOH 130 6 HOH HOH 710 A HOH 133 6 HOH HOH 711 A HOH 134 6 HOH HOH 712 A HOH 135 6 HOH HOH 713 A HOH 136 6 HOH HOH 714 A HOH 138 6 HOH HOH 715 A HOH 139 6 HOH HOH 716 A HOH 140 6 HOH HOH 717 A HOH 142 6 HOH HOH 718 A HOH 143 6 HOH HOH 719 A HOH 144 6 HOH HOH 720 A HOH 146 6 HOH HOH 721 A HOH 147 6 HOH HOH 722 A HOH 150 6 HOH HOH 723 A HOH 151 6 HOH HOH 724 A HOH 152 6 HOH HOH 725 A HOH 153 6 HOH HOH 726 A HOH 154 6 HOH HOH 727 A HOH 156 6 HOH HOH 728 A HOH 157 6 HOH HOH 729 A HOH 158 6 HOH HOH 730 A HOH 159 6 HOH HOH 731 A HOH 160 6 HOH HOH 732 A HOH 161 6 HOH HOH 733 A HOH 162 6 HOH HOH 734 A HOH 163 6 HOH HOH 735 A HOH 164 6 HOH HOH 736 A HOH 165 6 HOH HOH 737 A HOH 166 6 HOH HOH 738 A HOH 168 6 HOH HOH 739 A HOH 169 6 HOH HOH 740 A HOH 171 6 HOH HOH 741 A HOH 172 6 HOH HOH 742 A HOH 173 6 HOH HOH 743 A HOH 174 6 HOH HOH 744 A HOH 175 6 HOH HOH 745 A HOH 177 6 HOH HOH 746 A HOH 178 6 HOH HOH 747 A HOH 179 6 HOH HOH 748 A HOH 180 6 HOH HOH 749 A HOH 181 6 HOH HOH 750 A HOH 184 6 HOH HOH 751 A HOH 185 6 HOH HOH 752 A HOH 186 6 HOH HOH 753 A HOH 187 6 HOH HOH 754 A HOH 188 6 HOH HOH 755 A HOH 190 6 HOH HOH 756 A HOH 191 6 HOH HOH 757 A HOH 192 6 HOH HOH 758 A HOH 193 6 HOH HOH 759 A HOH 194 6 HOH HOH 760 A HOH 195 6 HOH HOH 761 A HOH 196 6 HOH HOH 762 A HOH 197 6 HOH HOH 763 A HOH 198 6 HOH HOH 764 A HOH 200 6 HOH HOH 765 A HOH 202 6 HOH HOH 766 A HOH 204 6 HOH HOH 767 A HOH 205 6 HOH HOH 768 A HOH 206 6 HOH HOH 769 A HOH 207 6 HOH HOH 770 A HOH 208 6 HOH HOH 771 A HOH 209 6 HOH HOH 772 A HOH 210 6 HOH HOH 773 A HOH 211 6 HOH HOH 774 A HOH 212 6 HOH HOH 775 A HOH 214 6 HOH HOH 776 A HOH 215 6 HOH HOH 777 A HOH 218 6 HOH HOH 778 A HOH 219 6 HOH HOH 779 A HOH 220 6 HOH HOH 780 A HOH 221 6 HOH HOH 781 A HOH 222 6 HOH HOH 782 A HOH 223 6 HOH HOH 783 A HOH 224 6 HOH HOH 784 A HOH 225 6 HOH HOH 785 A HOH 226 6 HOH HOH 786 A HOH 227 6 HOH HOH 787 A HOH 228 6 HOH HOH 788 A HOH 230 6 HOH HOH 789 A HOH 231 6 HOH HOH 790 A HOH 232 6 HOH HOH 791 A HOH 233 6 HOH HOH 792 A HOH 234 6 HOH HOH 793 A HOH 235 6 HOH HOH 794 A HOH 236 6 HOH HOH 795 A HOH 237 6 HOH HOH 796 A HOH 239 6 HOH HOH 797 A HOH 240 6 HOH HOH 798 A HOH 241 6 HOH HOH 799 A HOH 243 6 HOH HOH 800 A HOH 244 6 HOH HOH 801 A HOH 250 6 HOH HOH 802 A HOH 252 6 HOH HOH 803 A HOH 254 6 HOH HOH 804 A HOH 255 6 HOH HOH 805 A HOH 256 6 HOH HOH 806 A HOH 257 6 HOH HOH 807 A HOH 259 6 HOH HOH 808 A HOH 261 6 HOH HOH 809 A HOH 265 6 HOH HOH 810 A HOH 267 6 HOH HOH 811 A HOH 268 6 HOH HOH 812 A HOH 269 6 HOH HOH 813 A HOH 270 6 HOH HOH 814 A HOH 271 6 HOH HOH 815 A HOH 272 6 HOH HOH 816 A HOH 273 6 HOH HOH 817 A HOH 274 6 HOH HOH 818 A HOH 277 6 HOH HOH 819 A HOH 278 6 HOH HOH 820 A HOH 279 6 HOH HOH 821 A HOH 280 6 HOH HOH 822 A HOH 1 6 HOH HOH 101 B HOH 14 6 HOH HOH 102 B HOH 36 6 HOH HOH 103 B HOH 54 6 HOH HOH 104 B HOH 70 6 HOH HOH 105 B HOH 85 6 HOH HOH 106 B HOH 89 6 HOH HOH 107 B HOH 96 6 HOH HOH 108 B HOH 114 6 HOH HOH 109 B HOH 122 6 HOH HOH 110 B HOH 127 6 HOH HOH 111 B HOH 137 6 HOH HOH 112 B HOH 141 6 HOH HOH 113 B HOH 155 6 HOH HOH 114 B HOH 167 6 HOH HOH 115 B HOH 176 6 HOH HOH 116 B HOH 189 6 HOH HOH 117 B HOH 199 6 HOH HOH 118 B HOH 217 6 HOH HOH 119 B HOH 229 6 HOH HOH 120 B HOH 253 6 HOH HOH 121 B HOH 6 6 HOH HOH 101 C HOH 35 6 HOH HOH 102 C HOH 69 6 HOH HOH 103 C HOH 73 6 HOH HOH 104 C HOH 105 6 HOH HOH 105 C HOH 107 6 HOH HOH 106 C HOH 117 6 HOH HOH 107 C HOH 121 6 HOH HOH 108 C HOH 131 6 HOH HOH 109 C HOH 132 6 HOH HOH 110 C HOH 145 6 HOH HOH 111 C HOH 148 6 HOH HOH 112 C HOH 149 6 HOH HOH 113 C HOH 170 6 HOH HOH 114 C HOH 182 6 HOH HOH 115 C HOH 183 6 HOH HOH 116 C HOH 201 6 HOH HOH 117 C HOH 213 6 HOH HOH 118 C HOH 216 6 HOH HOH 119 C HOH 258 6 HOH HOH 120 C HOH 260 6 HOH HOH 121 C HOH 263 6 HOH HOH 122 C HOH 264 6 HOH HOH 123 C HOH 281 6 HOH HOH 124 C n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A ASP 6 n 6 ASP 6 A LYS 7 n 7 LYS 7 A ILE 8 n 8 ILE 8 A LYS 9 n 9 LYS 9 A VAL 10 n 10 VAL 10 A ILE 11 n 11 ILE 11 A LYS 12 n 12 LYS 12 A VAL 13 n 13 VAL 13 A PHE 14 n 14 PHE 14 A GLU 15 n 15 GLU 15 A ALA 16 n 16 ALA 16 A PHE 17 n 17 PHE 17 A ALA 18 n 18 ALA 18 A GLY 19 n 19 GLY 19 A ILE 20 n 20 ILE 20 A GLY 21 n 21 GLY 21 A SER 22 n 22 SER 22 A GLN 23 n 23 GLN 23 A PHE 24 n 24 PHE 24 A LYS 25 n 25 LYS 25 A ALA 26 n 26 ALA 26 A LEU 27 n 27 LEU 27 A LYS 28 n 28 LYS 28 A ASN 29 n 29 ASN 29 A ILE 30 n 30 ILE 30 A ALA 31 n 31 ALA 31 A ARG 32 n 32 ARG 32 A SER 33 n 33 SER 33 A LYS 34 n 34 LYS 34 A ASN 35 n 35 ASN 35 A TRP 36 n 36 TRP 36 A GLU 37 n 37 GLU 37 A ILE 38 n 38 ILE 38 A GLN 39 n 39 GLN 39 A HIS 40 n 40 HIS 40 A SER 41 n 41 SER 41 A GLY 42 n 42 GLY 42 A MET 43 n 43 MET 43 A VAL 44 n 44 VAL 44 A GLU 45 n 45 GLU 45 A TRP 46 n 46 TRP 46 A PHE 47 n 47 PHE 47 A VAL 48 n 48 VAL 48 A ASP 49 n 49 ASP 49 A ALA 50 n 50 ALA 50 A ILE 51 n 51 ILE 51 A VAL 52 n 52 VAL 52 A SER 53 n 53 SER 53 A TYR 54 n 54 TYR 54 A VAL 55 n 55 VAL 55 A ALA 56 n 56 ALA 56 A ILE 57 n 57 ILE 57 A HIS 58 n 58 HIS 58 A SER 59 n 59 SER 59 A LYS 60 n 60 LYS 60 A ASN 61 n 61 ASN 61 A PHE 62 n 62 PHE 62 A ASN 63 n 63 ASN 63 A PRO 64 n 64 PRO 64 A LYS 65 n 65 LYS 65 A ILE 66 n 66 ILE 66 A GLU 67 n 67 GLU 67 A ARG 68 n 68 ARG 68 A LEU 69 n 69 LEU 69 A ASP 70 n 70 ASP 70 A ARG 71 n 71 ARG 71 A ASP 72 n 72 ASP 72 A ILE 73 n 73 ILE 73 A LEU 74 n 74 LEU 74 A SER 75 n 75 SER 75 A ILE 76 n 76 ILE 76 A SER 77 n 77 SER 77 A ASN 78 n 78 ASN 78 A ASP 79 n 79 ASP 79 A SER 80 n 80 SER 80 A LYS 81 n 81 LYS 81 A MET 82 n 82 MET 82 A PRO 83 n 83 PRO 83 A ILE 84 n 84 ILE 84 A SER 85 n 85 SER 85 A GLU 86 n 86 GLU 86 A TYR 87 n 87 TYR 87 A GLY 88 n 88 GLY 88 A ILE 89 n 89 ILE 89 A LYS 90 n 90 LYS 90 A LYS 91 n 91 LYS 91 A ILE 92 n 92 ILE 92 A ASN 93 n 93 ASN 93 A ASN 94 n 94 ASN 94 A THR 95 n 95 THR 95 A ILE 96 n 96 ILE 96 A LYS 97 n 97 LYS 97 A ALA 98 n 98 ALA 98 A SER 99 n 99 SER 99 A TYR 100 n 100 TYR 100 A LEU 101 n 101 LEU 101 A ASN 102 n 102 ASN 102 A TYR 103 n 103 TYR 103 A ALA 104 n 104 ALA 104 A LYS 105 n 105 LYS 105 A LYS 106 n 106 LYS 106 A HIS 107 n 107 HIS 107 A PHE 108 n 108 PHE 108 A ASN 109 n 109 ASN 109 A ASN 110 n 110 ASN 110 A LEU 111 n 111 LEU 111 A PHE 112 n 112 PHE 112 A ASP 113 n 113 ASP 113 A ILE 114 n 114 ILE 114 A LYS 115 n 115 LYS 115 A LYS 116 n 116 LYS 116 A VAL 117 n 117 VAL 117 A ASN 118 n 118 ASN 118 A LYS 119 n 119 LYS 119 A ASP 120 n 120 ASP 120 A ASN 121 n 121 ASN 121 A PHE 122 n 122 PHE 122 A PRO 123 n 123 PRO 123 A LYS 124 n 124 LYS 124 A ASN 125 n 125 ASN 125 A ILE 126 n 126 ILE 126 A ASP 127 n 127 ASP 127 A ILE 128 n 128 ILE 128 A PHE 129 n 129 PHE 129 A THR 130 n 130 THR 130 A TYR 131 n 131 TYR 131 A SER 132 n 132 SER 132 A PHE 133 n 133 PHE 133 A PRO 134 n 134 PRO 134 A CYS 135 n 135 CYS 135 A GLN 136 n 136 GLN 136 A ASP 137 n 137 ASP 137 A LEU 138 n 138 LEU 138 A SER 139 n 139 SER 139 A VAL 140 n 140 VAL 140 A GLN 141 n 141 GLN 141 A GLY 142 n 142 GLY 142 A LEU 143 n 143 LEU 143 A GLN 144 n 144 GLN 144 A LYS 145 n 145 LYS 145 A GLY 146 n 146 GLY 146 A ILE 147 n 147 ILE 147 A ASP 148 n 148 ASP 148 A LYS 149 n 149 LYS 149 A GLU 150 n 150 GLU 150 A LEU 151 n 151 LEU 151 A ASN 152 n 152 ASN 152 A THR 153 n 153 THR 153 A ARG 154 n 154 ARG 154 A SER 155 n 155 SER 155 A GLY 156 n 156 GLY 156 A LEU 157 n 157 LEU 157 A LEU 158 n 158 LEU 158 A TRP 159 n 159 TRP 159 A GLU 160 n 160 GLU 160 A ILE 161 n 161 ILE 161 A GLU 162 n 162 GLU 162 A ARG 163 n 163 ARG 163 A ILE 164 n 164 ILE 164 A LEU 165 n 165 LEU 165 A GLU 166 n 166 GLU 166 A GLU 167 n 167 GLU 167 A ILE 168 n 168 ILE 168 A LYS 169 n 169 LYS 169 A ASN 170 n 170 ASN 170 A SER 171 n 171 SER 171 A PHE 172 n 172 PHE 172 A SER 173 n 173 SER 173 A LYS 174 n 174 LYS 174 A GLU 175 n 175 GLU 175 A GLU 176 n 176 GLU 176 A MET 177 n 177 MET 177 A PRO 178 n 178 PRO 178 A LYS 179 n 179 LYS 179 A TYR 180 n 180 TYR 180 A LEU 181 n 181 LEU 181 A LEU 182 n 182 LEU 182 A MET 183 n 183 MET 183 A GLU 184 n 184 GLU 184 A ASN 185 n 185 ASN 185 A VAL 186 n 186 VAL 186 A LYS 187 n 187 LYS 187 A ASN 188 n 188 ASN 188 A LEU 189 n 189 LEU 189 A LEU 190 n 190 LEU 190 A SER 191 n 191 SER 191 A HIS 192 n 192 HIS 192 A LYS 193 n 193 LYS 193 A ASN 194 n 194 ASN 194 A LYS 195 n 195 LYS 195 A LYS 196 n 196 LYS 196 A ASN 197 n 197 ASN 197 A TYR 198 n 198 TYR 198 A ASN 199 n 199 ASN 199 A THR 200 n 200 THR 200 A TRP 201 n 201 TRP 201 A LEU 202 n 202 LEU 202 A LYS 203 n 203 LYS 203 A GLN 204 n 204 GLN 204 A LEU 205 n 205 LEU 205 A GLU 206 n 206 GLU 206 A LYS 207 n 207 LYS 207 A PHE 208 n 208 PHE 208 A GLY 209 n 209 GLY 209 A TYR 210 n 210 TYR 210 A LYS 211 n 211 LYS 211 A SER 212 n 212 SER 212 A LYS 213 n 213 LYS 213 A THR 214 n 214 THR 214 A TYR 215 n 215 TYR 215 A LEU 216 n 216 LEU 216 A LEU 217 n 217 LEU 217 A ASN 218 n 218 ASN 218 A SER 219 n 219 SER 219 A LYS 220 n 220 LYS 220 A ASN 221 n 221 ASN 221 A PHE 222 n 222 PHE 222 A ASP 223 n 223 ASP 223 A ASN 224 n 224 ASN 224 A CYS 225 n 225 CYS 225 A GLN 226 n 226 GLN 226 A ASN 227 n 227 ASN 227 A ARG 228 n 228 ARG 228 A GLU 229 n 229 GLU 229 A ARG 230 n 230 ARG 230 A VAL 231 n 231 VAL 231 A PHE 232 n 232 PHE 232 A CYS 233 n 233 CYS 233 A LEU 234 n 234 LEU 234 A SER 235 n 235 SER 235 A ILE 236 n 236 ILE 236 A ARG 237 n 237 ARG 237 A ASP 238 n 238 ASP 238 A ASP 239 n 239 ASP 239 A TYR 240 n 240 TYR 240 A LEU 241 n 241 LEU 241 A GLU 242 n 242 GLU 242 A LYS 243 n 243 LYS 243 A THR 244 n 244 THR 244 A GLY 245 n 245 GLY 245 A PHE 246 n 246 PHE 246 A LYS 247 n 247 LYS 247 A PHE 248 n 248 PHE 248 A LYS 249 n 249 LYS 249 A GLU 250 n 250 GLU 250 A LEU 251 n 251 LEU 251 A GLU 252 n 252 GLU 252 A LYS 253 n 253 LYS 253 A VAL 254 n 254 VAL 254 A LYS 255 n 255 LYS 255 A ASN 256 n 256 ASN 256 A PRO 257 n 257 PRO 257 A PRO 258 n 258 PRO 258 A LYS 259 n 259 LYS 259 A LYS 260 n 260 LYS 260 A ILE 261 n 261 ILE 261 A LYS 262 n 262 LYS 262 A ASP 263 n 263 ASP 263 A ILE 264 n 264 ILE 264 A LEU 265 n 265 LEU 265 A VAL 266 n 266 VAL 266 A ASP 267 n 267 ASP 267 A SER 268 n 268 SER 268 A SER 269 n 269 SER 269 A ASN 270 n 270 ASN 270 A TYR 271 n 271 TYR 271 A LYS 272 n 272 LYS 272 A TYR 273 n 273 TYR 273 A LEU 274 n 274 LEU 274 A ASN 275 n 275 ASN 275 A LEU 276 n 276 LEU 276 A ASN 277 n 277 ASN 277 A LYS 278 n 278 LYS 278 A TYR 279 n 279 TYR 279 A GLU 280 n 280 GLU 280 A THR 281 n 281 THR 281 A THR 282 n 282 THR 282 A THR 283 n 283 THR 283 A PHE 284 n 284 PHE 284 A ARG 285 n 285 ARG 285 A GLU 286 n 286 GLU 286 A THR 287 n 287 THR 287 A LYS 288 n 288 LYS 288 A SER 289 n 289 SER 289 A ASN 290 n 290 ASN 290 A ILE 291 n 291 ILE 291 A ILE 292 n 292 ILE 292 A SER 293 n 293 SER 293 A ARG 294 n 294 ARG 294 A PRO 295 n 295 PRO 295 A LEU 296 n 296 LEU 296 A LYS 297 n 297 LYS 297 A ASN 298 n 298 ASN 298 A TYR 299 n 299 TYR 299 A THR 300 n 300 THR 300 A THR 301 n 301 THR 301 A PHE 302 n 302 PHE 302 A ASN 303 n 303 ASN 303 A SER 304 n 304 SER 304 A GLU 305 n 305 GLU 305 A ASN 306 n 306 ASN 306 A TYR 307 n 307 TYR 307 A VAL 308 n 308 VAL 308 A TYR 309 n 309 TYR 309 A ASN 310 n 310 ASN 310 A ILE 311 n 311 ILE 311 A ASN 312 n 312 ASN 312 A GLY 313 n 313 GLY 313 A ILE 314 n 314 ILE 314 A GLY 315 n 315 GLY 315 A PRO 316 n 316 PRO 316 A THR 317 n 317 THR 317 A LEU 318 n 318 LEU 318 A THR 319 n 319 THR 319 A ALA 320 n 320 ALA 320 A SER 321 n 321 SER 321 A GLY 322 n 322 GLY 322 A ALA 323 n 323 ALA 323 A ASN 324 n 324 ASN 324 A SER 325 n 325 SER 325 A ARG 326 n 326 ARG 326 A ILE 327 n 327 ILE 327 A LYS 328 n 328 LYS 328 A ILE 329 n 329 ILE 329 A GLU 330 n 330 GLU 330 A THR 331 n 331 THR 331 A GLN 332 n 332 GLN 332 A GLN 333 n 333 GLN 333 A GLY 334 n 334 GLY 334 A VAL 335 n 335 VAL 335 A ARG 336 n 336 ARG 336 A TYR 337 n 337 TYR 337 A LEU 338 n 338 LEU 338 A THR 339 n 339 THR 339 A PRO 340 n 340 PRO 340 A LEU 341 n 341 LEU 341 A GLU 342 n 342 GLU 342 A CYS 343 n 343 CYS 343 A PHE 344 n 344 PHE 344 A LYS 345 n 345 LYS 345 A TYR 346 n 346 TYR 346 A MET 347 n 347 MET 347 A GLN 348 n 348 GLN 348 A PHE 349 n 349 PHE 349 A ASP 350 n 350 ASP 350 A VAL 351 n 351 VAL 351 A ASN 352 n 352 ASN 352 A ASP 353 n 353 ASP 353 A PHE 354 n 354 PHE 354 A LYS 355 n 355 LYS 355 A LYS 356 n 356 LYS 356 A VAL 357 n 357 VAL 357 A GLN 358 n 358 GLN 358 A SER 359 n 359 SER 359 A THR 360 n 360 THR 360 A ASN 361 n 361 ASN 361 A LEU 362 n 362 LEU 362 A ILE 363 n 363 ILE 363 A SER 364 n 364 SER 364 A GLU 365 n 365 GLU 365 A ASN 366 n 366 ASN 366 A LYS 367 n 367 LYS 367 A MET 368 n 368 MET 368 A ILE 369 n 369 ILE 369 A TYR 370 n 370 TYR 370 A ILE 371 n 371 ILE 371 A ALA 372 n 372 ALA 372 A GLY 373 n 373 GLY 373 A ASN 374 n 374 ASN 374 A SER 375 n 375 SER 375 A ILE 376 n 376 ILE 376 A PRO 377 n 377 PRO 377 A VAL 378 n 378 VAL 378 A LYS 379 n 379 LYS 379 A ILE 380 n 380 ILE 380 A LEU 381 n 381 LEU 381 A GLU 382 n 382 GLU 382 A ALA 383 n 383 ALA 383 A ILE 384 n 384 ILE 384 A PHE 385 n 385 PHE 385 A ASN 386 n 386 ASN 386 A THR 387 n 387 THR 387 A LEU 388 n 388 LEU 388 A GLU 389 n 389 GLU 389 A PHE 390 n 390 PHE 390 A VAL 391 n 391 VAL 391 A ASN 392 n 392 ASN 392 A ASN 393 n 393 ASN 393 A n 394 394 A n 395 395 A n 396 396 A n 397 397 A n 398 398 A n 399 399 A n 400 400 A n 401 401 A n 402 402 A n 403 403 A C 1 n 1 DC 1 B C 2 n 2 DC 2 B A 3 n 3 DA 3 B C 4 n 4 DC 4 B A 5 n 5 DA 5 B T 6 n 6 DT 6 B G 7 n 7 DG 7 B C37 8 n 8 C37 8 B G 9 n 9 DG 9 B C 10 n 10 DC 10 B T 11 n 11 DT 11 B G 12 n 12 DG 12 B A 13 n 13 DA 13 B A 14 n 14 DA 14 B G 1 n 1 DG 1 C T 2 n 2 DT 2 C T 3 n 3 DT 3 C C 4 n 4 DC 4 C A 5 n 5 DA 5 C G 6 n 6 DG 6 C 5CM 7 n 7 5CM 7 C G 8 n 8 DG 8 C C 9 n 9 DC 9 C A 10 n 10 DA 10 C T 11 n 11 DT 11 C G 12 n 12 DG 12 C T 13 n 13 DT 13 C G 14 n 14 DG 14 C 1.3285 0.7139 0.0899 1.8304 0.2160 1.4460 0.1138 -0.2095 0.1597 0.0245 -0.0982 0.0650 -0.1703 0.1231 -0.0156 -0.0916 -0.0668 0.0118 -0.0382 -0.0230 -0.0857 refined 25.8750 30.8230 49.2440 X-RAY DIFFRACTION 0.9724 0.6691 -0.1999 2.2069 0.0468 0.7196 -0.0188 -0.0366 -0.0063 -0.1209 -0.0562 0.1295 0.0652 -0.0767 0.0749 -0.0695 -0.0421 -0.0339 -0.0185 0.0294 -0.0260 refined 12.6010 9.2560 40.5430 X-RAY DIFFRACTION 1.3002 -0.0789 0.4393 1.9057 -0.0269 2.1045 0.1105 -0.0305 -0.0781 -0.0129 0.0146 -0.2426 0.1346 0.3025 -0.1251 -0.0503 0.0155 0.0014 0.0055 0.0614 -0.0227 refined 29.0600 5.7600 43.5620 X-RAY DIFFRACTION A 6 A 259 X-RAY DIFFRACTION 1 A 376 A 393 X-RAY DIFFRACTION 1 A 260 A 375 X-RAY DIFFRACTION 2 B 1 B 14 X-RAY DIFFRACTION 3 C 1 C 14 X-RAY DIFFRACTION 3 author_and_software_defined_assembly PISA 3 trimeric 5500 -21 20580 B C37 8 B C37 8 DC C 5CM 7 C 5CM 7 DC 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLU 37 A O GLU 37 A N ILE 11 A N ILE 11 A N PHE 14 A N PHE 14 A O ILE 128 A O ILE 128 A N PHE 129 A N PHE 129 A O TYR 180 A O TYR 180 A N LEU 181 A N LEU 181 A O SER 235 A O SER 235 A O ILE 236 A O ILE 236 A N LYS 211 A N LYS 211 A N ARG 285 A N ARG 285 A O SER 293 A O SER 293 A N ILE 292 A N ILE 292 A O ASN 310 A O ASN 310 A N TYR 309 A N TYR 309 A O LYS 328 A O LYS 328 A N ILE 329 A N ILE 329 A O ARG 336 A O ARG 336 1 A HOH 785 F HOH 1 A MET 1 A MET 1 1 Y 1 A ASN 2 A ASN 2 1 Y 1 A SER 3 A SER 3 1 Y 1 A ASN 4 A ASN 4 1 Y 1 A LYS 5 A LYS 5 1 Y 1 A GLU 394 A GLU 394 1 Y 1 A GLU 395 A GLU 395 1 Y 1 A LEU 396 A LEU 396 1 Y 1 A GLU 397 A GLU 397 1 Y 1 A HIS 398 A HIS 398 1 Y 1 A HIS 399 A HIS 399 1 Y 1 A HIS 400 A HIS 400 1 Y 1 A HIS 401 A HIS 401 1 Y 1 A HIS 402 A HIS 402 1 Y 1 A HIS 403 A HIS 403 1 Y 1 -6.15 1.00 110.10 103.95 B B B C1' O4' C4' DT DT DT 6 6 6 N 1 A LYS 60 B -90.96 -74.93 1 A ASN 61 B -116.42 61.93 1 A SER 80 85.45 -9.66 1 A SER 80 85.45 -7.65 1 A PHE 112 69.26 -66.17 1 A ASN 290 81.89 13.18 0.954 0.935 (1) THE CRYSTAL WAS GROWN IN THE PRESENCE OF A SAMPLE THAT WAS LABELLED AS S-ADENOSYL-METHIONINE (SAM), BUT APPEARS TO HAVE BEEN DEGRADED TO S-ADENOSYL-HOMOCYSTEINE (SAH) EITHER PRIOR TO OR DURING CRYSTALLIZATION. PROGRAM CNS HAS BEEN USED FOR DNA REFINEMENT. NO SUGAR PUCKER CONSTRAINTS HAVE BEEN APPLIED. (2) THE MODELLED S-ADENOSYLHOMOCYSTEINE (SAH) IS UNCERTAIN. ITS BINDING SITE MIGHT BE OCCUPIED IN PART BY S-ADENOSYLMETHIONINE (SAM) OR THE SAM DEGRADATION PRODUCT 5 -METHYLTHIOADENOSINE (MTA) (FROM SCISSION OF SAM TO MTA AND HOMOSERINE LACTONE). THE DISTANCE BETWEEN CYS135 S AND C6 OF THE SUBSTRATE CYTOSINE BASE IS INTERMEDIATE BETWEEN A NON-COVALENT AND A COVALENT BOND. A DISTANCE BELOW THE VAN DER WAALS LIMIT SUGGESTS THAT SLIGHT DEVIATIONS FROM THE PLANARITY OF THE DNA BASE SHOULD OCCUR. AS THE RESOLUTION OF THE X-RAY DATA IS INSUFFICIENT TO DETECT SUCH DEVIATIONS, THEY WERE NOT MODELLED. (3) HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. TLS REFINEMENT HAS BEEN USED. 0.21631 0.17632 0.17832 0.17832 2.15 38.60 1729 34274 34274 5.0 98.96 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.214 0.176 0.80 0.80 1.40 PDB entry 2C7P MAXIMUM LIKELIHOOD MASK 2.15 38.60 267 4068 32 570 3199 0.010 0.022 4388 0.000 0.020 2941 1.253 2.131 6064 3.966 3.000 7256 6.160 5.000 471 38.254 25.301 183 15.063 15.000 767 15.209 15.000 17 0.007 0.020 4548 0.007 0.020 810 0.192 0.200 771 0.232 0.200 2985 0.181 0.200 2059 0.108 0.200 1868 0.137 0.200 258 0.079 0.200 14 0.380 0.200 15 0.084 0.200 3 0.288 0.203 2.206 138 2348 2486 20 99.92 33.4 2.15 40.000 4DKJ 34324 34324 0.078 0.078 1 5.5 3.9 99.3 0.31 2.15 2.27 2.5 4957 0.31 1 4.0 99.9 data collection ADSC Quantum phasing MOLREP model building CHAINSAW refinement REFMAC model building ARP/wARP data reduction MOSFLM data scaling SCALA phasing CHAINSAW phasing REFMAC CpG specific methyltransferase in complex with target DNA 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 6 N N 6 N N AUTHORS STATE THAT THE BIOLOGICAL UNIT CONTAINS PROTEIN CHAIN A, AND DNA STRANDS B AND C. THE TRIMER (ACCORDING TO PDB CONVENTIONS) IS A COMPLEX OF THE MONOMERIC METHYLTRANSFERASE WITH ITS SUBSTRATE, DOUBLE STRANDED DNA. A GLY 21 A GLY 21 HELX_P A ALA 31 A ALA 31 1 1 11 A ARG 32 A ARG 32 HELX_P A LYS 34 A LYS 34 5 2 3 A PHE 47 A PHE 47 HELX_P A SER 59 A SER 59 1 3 13 A SER 85 A SER 85 HELX_P A ASN 93 A ASN 93 1 4 9 A THR 95 A THR 95 HELX_P A PHE 108 A PHE 108 1 5 14 A ASP 113 A ASP 113 HELX_P A VAL 117 A VAL 117 5 6 5 A ASP 148 A ASP 148 HELX_P A ASN 152 A ASN 152 5 7 5 A ARG 154 A ARG 154 HELX_P A GLY 156 A GLY 156 5 8 3 A LEU 157 A LEU 157 HELX_P A PHE 172 A PHE 172 1 9 16 A SER 173 A SER 173 HELX_P A MET 177 A MET 177 5 10 5 A ASN 188 A ASN 188 HELX_P A LEU 190 A LEU 190 5 11 3 A SER 191 A SER 191 HELX_P A PHE 208 A PHE 208 1 12 18 A LYS 220 A LYS 220 HELX_P A PHE 222 A PHE 222 5 13 3 A ASP 238 A ASP 238 HELX_P A GLY 245 A GLY 245 1 14 8 A GLU 250 A GLU 250 HELX_P A VAL 254 A VAL 254 5 15 5 A LYS 260 A LYS 260 HELX_P A LEU 265 A LEU 265 5 16 6 A PHE 302 A PHE 302 HELX_P A GLU 305 A GLU 305 5 17 4 A GLY 322 A GLY 322 HELX_P A ARG 326 A ARG 326 5 18 5 A THR 339 A THR 339 HELX_P A MET 347 A MET 347 1 19 9 A ASP 350 A ASP 350 HELX_P A THR 360 A THR 360 1 20 11 A SER 364 A SER 364 HELX_P A ASN 374 A ASN 374 1 21 11 A PRO 377 A PRO 377 HELX_P A THR 387 A THR 387 1 22 11 covale 1.605 both B DG 7 B O3' DG 7 1_555 B C37 8 B P C37 8 1_555 covale 1.610 one B C37 8 B O3' C37 8 1_555 B DG 9 B P DG 9 1_555 covale 1.606 both C DG 6 C O3' DG 6 1_555 C 5CM 7 C P 5CM 7 1_555 covale 1.615 both C 5CM 7 C O3' 5CM 7 1_555 C DG 8 C P DG 8 1_555 hydrog WATSON-CRICK B DC 2 B N3 DC 2 1_555 C DG 14 C N1 DG 14 1_555 hydrog WATSON-CRICK B DC 2 B N4 DC 2 1_555 C DG 14 C O6 DG 14 1_555 hydrog WATSON-CRICK B DC 2 B O2 DC 2 1_555 C DG 14 C N2 DG 14 1_555 hydrog WATSON-CRICK B DA 3 B N1 DA 3 1_555 C DT 13 C N3 DT 13 1_555 hydrog WATSON-CRICK B DA 3 B N6 DA 3 1_555 C DT 13 C O4 DT 13 1_555 hydrog WATSON-CRICK B DC 4 B N3 DC 4 1_555 C DG 12 C N1 DG 12 1_555 hydrog WATSON-CRICK B DC 4 B N4 DC 4 1_555 C DG 12 C O6 DG 12 1_555 hydrog WATSON-CRICK B DC 4 B O2 DC 4 1_555 C DG 12 C N2 DG 12 1_555 hydrog WATSON-CRICK B DA 5 B N1 DA 5 1_555 C DT 11 C N3 DT 11 1_555 hydrog WATSON-CRICK B DA 5 B N6 DA 5 1_555 C DT 11 C O4 DT 11 1_555 hydrog WATSON-CRICK B DT 6 B N3 DT 6 1_555 C DA 10 C N1 DA 10 1_555 hydrog WATSON-CRICK B DT 6 B O4 DT 6 1_555 C DA 10 C N6 DA 10 1_555 hydrog WATSON-CRICK B DG 7 B N1 DG 7 1_555 C DC 9 C N3 DC 9 1_555 hydrog WATSON-CRICK B DG 7 B N2 DG 7 1_555 C DC 9 C O2 DC 9 1_555 hydrog WATSON-CRICK B DG 7 B O6 DG 7 1_555 C DC 9 C N4 DC 9 1_555 hydrog WATSON-CRICK B DG 9 B N1 DG 9 1_555 C 5CM 7 C N3 5CM 7 1_555 hydrog WATSON-CRICK B DG 9 B N2 DG 9 1_555 C 5CM 7 C O2 5CM 7 1_555 hydrog WATSON-CRICK B DG 9 B O6 DG 9 1_555 C 5CM 7 C N4 5CM 7 1_555 hydrog WATSON-CRICK B DC 10 B N3 DC 10 1_555 C DG 6 C N1 DG 6 1_555 hydrog WATSON-CRICK B DC 10 B N4 DC 10 1_555 C DG 6 C O6 DG 6 1_555 hydrog WATSON-CRICK B DC 10 B O2 DC 10 1_555 C DG 6 C N2 DG 6 1_555 hydrog WATSON-CRICK B DT 11 B N3 DT 11 1_555 C DA 5 C N1 DA 5 1_555 hydrog WATSON-CRICK B DT 11 B O4 DT 11 1_555 C DA 5 C N6 DA 5 1_555 hydrog WATSON-CRICK B DG 12 B N1 DG 12 1_555 C DC 4 C N3 DC 4 1_555 hydrog WATSON-CRICK B DG 12 B N2 DG 12 1_555 C DC 4 C O2 DC 4 1_555 hydrog WATSON-CRICK B DG 12 B O6 DG 12 1_555 C DC 4 C N4 DC 4 1_555 hydrog WATSON-CRICK B DA 13 B N1 DA 13 1_555 C DT 3 C N3 DT 3 1_555 hydrog WATSON-CRICK B DA 13 B N6 DA 13 1_555 C DT 3 C O4 DT 3 1_555 hydrog WATSON-CRICK B DA 14 B N1 DA 14 1_555 C DT 2 C N3 DT 2 1_555 hydrog WATSON-CRICK B DA 14 B N6 DA 14 1_555 C DT 2 C O4 DT 2 1_555 TRANSFERASE/DNA CG-SPECIFICITY, DNA INTERCALATION, CPG SEQUENCE, CYTOSINE C5-METHYLATION, C5-METHYLCYTOSINE, NUCLEOTIDE FLIPPING, S-adenosyl-L-methionine-dependent methyltransferases, C-5 cytosine-specific DNA methylases, DNA (cytosine-5-)-methyltransferase activity, DNA binding, DNA (cytosine-5-)-methylation, intracellular, TRANSFERASE-DNA complex Q8EVR5_MYCPE UNP 1 1 Q8EVR5 MNSNKDKIKVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIEQLDKDILSISNDS KMPISEYGIKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFPKNIDIFTYSFPCQDLSVQGLQKGIDKELNTRSGLLWE IERILEEIKNSFSKEEMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDY LEKTGFKFKELEKVKNPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRSLKNYTTFNSENYVYNINGIGPTLTA SGANSRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNEE 4DKJ PDB 2 4DKJ 4DKJ PDB 3 4DKJ 1 395 4DKJ 1 395 Q8EVR5 A 1 1 395 1 14 4DKJ 1 14 4DKJ B 2 1 14 1 14 4DKJ 1 14 4DKJ C 3 1 14 1 GLN SEE REMARK 999 ARG 68 4DKJ A Q8EVR5 UNP 68 68 1 LYS SEE REMARK 999 ARG 71 4DKJ A Q8EVR5 UNP 71 71 1 SER engineered mutation PRO 295 4DKJ A Q8EVR5 UNP 295 295 1 expression tag LEU 396 4DKJ A Q8EVR5 UNP 396 1 expression tag GLU 397 4DKJ A Q8EVR5 UNP 397 1 expression tag HIS 398 4DKJ A Q8EVR5 UNP 398 1 expression tag HIS 399 4DKJ A Q8EVR5 UNP 399 1 expression tag HIS 400 4DKJ A Q8EVR5 UNP 400 1 expression tag HIS 401 4DKJ A Q8EVR5 UNP 401 1 expression tag HIS 402 4DKJ A Q8EVR5 UNP 402 1 expression tag HIS 403 4DKJ A Q8EVR5 UNP 403 6 5 parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A TRP 36 A TRP 36 A VAL 44 A VAL 44 A LYS 9 A LYS 9 A ALA 16 A ALA 16 A ILE 128 A ILE 128 A TYR 131 A TYR 131 A TYR 180 A TYR 180 A VAL 186 A VAL 186 A GLU 229 A GLU 229 A ARG 237 A ARG 237 A TYR 210 A TYR 210 A ASN 218 A ASN 218 A ARG 285 A ARG 285 A GLU 286 A GLU 286 A ILE 292 A ILE 292 A PRO 295 A PRO 295 A TYR 307 A TYR 307 A ASN 310 A ASN 310 A LYS 328 A LYS 328 A THR 331 A THR 331 A GLY 334 A GLY 334 A TYR 337 A TYR 337 BINDING SITE FOR RESIDUE SAH A 501 A SAH 501 Software 23 BINDING SITE FOR RESIDUE GOL A 502 A GOL 502 Software 9 A PHE 17 A PHE 17 23 1_555 A ALA 18 A ALA 18 23 1_555 A GLY 19 A GLY 19 23 1_555 A ILE 20 A ILE 20 23 1_555 A GLY 21 A GLY 21 23 1_555 A SER 22 A SER 22 23 1_555 A GLN 23 A GLN 23 23 1_555 A GLU 45 A GLU 45 23 1_555 A TRP 46 A TRP 46 23 1_555 A PHE 47 A PHE 47 23 1_555 A SER 80 A SER 80 23 1_555 A PHE 112 A PHE 112 23 1_555 A ASP 113 A ASP 113 23 1_555 A ILE 114 A ILE 114 23 1_555 A SER 132 A SER 132 23 1_555 A ARG 154 A ARG 154 23 1_555 A LEU 157 A LEU 157 23 1_555 A ASN 374 A ASN 374 23 1_555 A SER 375 A SER 375 23 1_555 A HOH 612 F HOH 23 1_555 A HOH 625 F HOH 23 1_555 A HOH 655 F HOH 23 1_555 B C37 8 B C37 8 23 1_555 A TYR 337 A TYR 337 9 1_555 A ASN 366 A ASN 366 9 1_555 A ILE 369 A ILE 369 9 1_555 A HOH 613 F HOH 9 1_555 A HOH 616 F HOH 9 1_555 A HOH 633 F HOH 9 1_555 A HOH 650 F HOH 9 1_555 A HOH 651 F HOH 9 1_555 C DA 5 C DA 5 9 1_555 92 P 41 21 2