0.011912
0.000000
0.000000
0.000000
0.011912
0.000000
0.000000
0.000000
0.005752
0.00000
0.00000
0.00000
Wojciechowski, M.
Czapinska, H.
Bochtler, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
83.950
83.950
173.840
C10 H16 N3 O7 P
321.224
n
5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H13 F N3 O7 P
325.188
n
5-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C14 H20 N6 O5 S
384.411
n
S-ADENOSYL-L-HOMOCYSTEINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
N
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
N
C
N
122
R
C
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
N
N
127
N
C
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
F
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
N
N
146
R
C
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
S
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
P
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
C
N
165
R
C
N
166
N
O
N
167
S
C
N
168
N
O
N
169
N
C
N
170
R
C
Y
171
N
N
Y
172
N
C
Y
173
N
N
Y
174
N
C
Y
175
N
C
N
176
N
N
Y
177
N
N
Y
178
N
C
Y
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
N
N
213
N
C
N
214
N
C
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
O
N
230
N
P
N
231
N
O
N
232
N
O
N
233
N
O
N
234
N
C
N
235
R
C
N
236
N
O
N
237
S
C
N
238
N
O
N
239
N
C
N
240
R
C
Y
241
N
N
Y
242
N
C
Y
243
N
N
Y
244
N
C
N
245
N
C
N
246
N
O
N
247
N
N
N
248
N
C
N
249
N
N
N
250
N
N
Y
251
N
C
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
O
N
267
N
P
N
268
N
O
N
269
N
O
N
270
N
O
N
271
N
C
N
272
R
C
N
273
N
O
N
274
S
C
N
275
N
O
N
276
N
C
N
277
R
C
N
278
N
N
N
279
N
C
N
280
N
O
N
281
N
N
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
N
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
O
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
N
C
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
C
N
352
N
O
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
Y
370
N
C
Y
371
N
N
Y
372
N
C
Y
373
N
C
Y
374
N
N
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
S
C
N
394
N
C
N
395
N
C
N
396
N
C
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
N
416
N
C
N
417
N
C
N
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
C
N
439
N
C
N
440
N
C
N
441
N
N
N
442
N
O
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
N
N
459
S
C
N
460
N
C
N
461
N
O
N
462
N
C
N
463
N
C
N
464
N
S
N
465
N
C
N
466
N
O
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
N
N
479
S
C
N
480
N
C
N
481
N
O
N
482
N
C
Y
483
N
C
Y
484
N
C
Y
485
N
C
Y
486
N
C
Y
487
N
C
Y
488
N
C
N
489
N
O
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
N
N
502
S
C
N
503
N
C
N
504
N
O
N
505
N
C
N
506
N
C
N
507
N
C
N
508
N
O
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
N
N
519
S
C
N
520
N
C
N
521
N
C
N
522
N
S
N
523
N
C
N
524
N
O
N
525
N
O
N
526
N
C
N
527
S
C
N
528
N
O
N
529
S
C
N
530
N
O
N
531
R
C
N
532
N
O
N
533
R
C
Y
534
N
N
Y
535
N
C
Y
536
N
N
Y
537
N
C
Y
538
N
C
N
539
N
N
Y
540
N
N
Y
541
N
C
Y
542
N
N
Y
543
N
C
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
N
N
565
S
C
N
566
N
C
N
567
N
O
N
568
N
C
N
569
N
O
N
570
N
O
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
N
N
579
S
C
N
580
N
C
N
581
N
O
N
582
R
C
N
583
N
O
N
584
N
C
N
585
N
O
N
586
N
H
N
587
N
H
N
588
N
H
N
589
N
H
N
590
N
H
N
591
N
H
N
592
N
H
N
593
N
H
N
594
N
H
N
595
N
N
N
596
S
C
N
597
N
C
N
598
N
O
N
599
N
C
Y
600
N
C
Y
601
N
C
Y
602
N
C
Y
603
N
N
Y
604
N
C
Y
605
N
C
Y
606
N
C
Y
607
N
C
Y
608
N
C
N
609
N
O
N
610
N
H
N
611
N
H
N
612
N
H
N
613
N
H
N
614
N
H
N
615
N
H
N
616
N
H
N
617
N
H
N
618
N
H
N
619
N
H
N
620
N
H
N
621
N
H
N
622
N
N
N
623
S
C
N
624
N
C
N
625
N
O
N
626
N
C
Y
627
N
C
Y
628
N
C
Y
629
N
C
Y
630
N
C
Y
631
N
C
Y
632
N
C
N
633
N
O
N
634
N
O
N
635
N
H
N
636
N
H
N
637
N
H
N
638
N
H
N
639
N
H
N
640
N
H
N
641
N
H
N
642
N
H
N
643
N
H
N
644
N
H
N
645
N
H
N
646
N
N
N
647
S
C
N
648
N
C
N
649
N
O
N
650
N
C
N
651
N
C
N
652
N
C
N
653
N
O
N
654
N
H
N
655
N
H
N
656
N
H
N
657
N
H
N
658
N
H
N
659
N
H
N
660
N
H
N
661
N
H
N
662
N
H
N
663
N
H
N
664
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
Y
184
N
sing
Y
185
N
doub
N
186
N
sing
Y
187
N
doub
N
188
N
sing
N
189
N
sing
Y
190
N
sing
Y
191
N
doub
N
192
N
sing
Y
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
Y
252
N
sing
Y
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
Y
258
N
doub
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
Y
375
N
sing
Y
376
N
doub
Y
377
N
doub
N
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
doub
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
doub
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
Y
483
N
doub
Y
484
N
sing
Y
485
N
sing
N
486
N
sing
Y
487
N
doub
N
488
N
sing
Y
489
N
doub
N
490
N
sing
Y
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
doub
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
doub
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
Y
545
N
sing
Y
546
N
sing
Y
547
N
doub
N
548
N
sing
Y
549
N
sing
Y
550
N
sing
Y
551
N
doub
N
552
N
sing
Y
553
N
doub
N
554
N
sing
N
555
N
sing
Y
556
N
sing
Y
557
N
doub
N
558
N
sing
Y
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
doub
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
doub
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
sing
N
590
N
sing
N
591
N
sing
N
592
N
sing
N
593
N
sing
N
594
N
sing
N
595
N
doub
N
596
N
sing
N
597
N
sing
N
598
N
sing
N
599
N
sing
Y
600
N
doub
Y
601
N
sing
Y
602
N
sing
N
603
N
sing
Y
604
N
doub
Y
605
N
sing
Y
606
N
sing
N
607
N
sing
Y
608
N
sing
Y
609
N
doub
N
610
N
sing
Y
611
N
doub
N
612
N
sing
Y
613
N
sing
N
614
N
sing
N
615
N
sing
N
616
N
sing
N
617
N
sing
N
618
N
sing
N
619
N
sing
N
620
N
sing
N
621
N
sing
N
622
N
sing
N
623
N
doub
N
624
N
sing
N
625
N
sing
N
626
N
sing
N
627
N
sing
Y
628
N
doub
Y
629
N
sing
Y
630
N
sing
N
631
N
sing
Y
632
N
doub
N
633
N
sing
Y
634
N
doub
N
635
N
sing
Y
636
N
sing
N
637
N
sing
N
638
N
sing
N
639
N
sing
N
640
N
sing
N
641
N
sing
N
642
N
sing
N
643
N
sing
N
644
N
sing
N
645
N
sing
N
646
N
sing
N
647
N
doub
N
648
N
sing
N
649
N
sing
N
650
N
sing
N
651
N
sing
N
652
N
sing
N
653
N
sing
N
654
N
sing
N
655
N
sing
N
656
N
sing
N
657
N
sing
N
658
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
110
105
110
10.1073/pnas.1207986110
23248272
CpG underrepresentation and the bacterial CpG-specific DNA methyltransferase M.MpeI.
2013
10.2210/pdb4dkj/pdb
pdb_00004dkj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
BENT MIRRORS
CCD
2010-12-05
ADSC QUANTUM 315
DOUBLE CRYSTAL MONOCHROMATOR
SINGLE WAVELENGTH
M
x-ray
1
0.97949
1.0
I02
Diamond
0.97949
SYNCHROTRON
DIAMOND BEAMLINE I02
47310.082
Cytosine-specific methyltransferase
2.1.1.37
S295P
1
man
polymer
4267.773
DNA (5'-D(*CP*CP*AP*CP*AP*TP*GP*(C37)P*GP*CP*TP*GP*AP*A)-3')
1
syn
polymer
4325.829
DNA (5'-D(*GP*TP*TP*CP*AP*GP*(5CM)P*GP*CP*AP*TP*GP*TP*G)-3')
1
syn
polymer
384.411
S-ADENOSYL-L-HOMOCYSTEINE
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
267
nat
water
no
no
MNSNKDKIKVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDS
KMPISEYGIKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFPKNIDIFTYSFPCQDLSVQGLQKGIDKELNTRSGLLWE
IERILEEIKNSFSKEEMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDY
LEKTGFKFKELEKVKNPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRPLKNYTTFNSENYVYNINGIGPTLTA
SGANSRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNEELEHHH
HHH
MNSNKDKIKVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDS
KMPISEYGIKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFPKNIDIFTYSFPCQDLSVQGLQKGIDKELNTRSGLLWE
IERILEEIKNSFSKEEMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDY
LEKTGFKFKELEKVKNPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRPLKNYTTFNSENYVYNINGIGPTLTA
SGANSRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNEELEHHH
HHH
A
polypeptide(L)
no
yes
(DC)(DC)(DA)(DC)(DA)(DT)(DG)(C37)(DG)(DC)(DT)(DG)(DA)(DA)
CCACATGCGCTGAA
B
polydeoxyribonucleotide
no
yes
(DG)(DT)(DT)(DC)(DA)(DG)(5CM)(DG)(DC)(DA)(DT)(DG)(DT)(DG)
GTTCAGCGCATGTG
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HF-2
sample
MYPE4940
272633
Mycoplasma penetrans
562
Escherichia coli
ER2566
PLASMID
PET28A
1
2.74
55.09
VAPOR DIFFUSION, SITTING DROP
5.6
10% PEG 3350, 150 mM NaCl, 50 mM sodium. For cryoprotection glycerol was added to 25% v/v, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 294K
294
-3.130
1
19
B
2
C
14
2.401
B_DC2:DG14_C
1
-10.378
0.234
0.248
-0.119
2.160
1
20
B
3
C
13
0.878
B_DA3:DT13_C
2
-5.522
0.022
-0.048
-0.110
6.236
1
19
B
4
C
12
-1.023
B_DC4:DG12_C
3
-16.399
0.701
0.054
-0.334
-5.994
1
20
B
5
C
11
3.778
B_DA5:DT11_C
4
-5.041
-0.046
-0.057
-0.062
3.733
1
20
B
6
C
10
4.475
B_DT6:DA10_C
5
-5.629
-0.124
-0.084
-0.072
9.839
1
19
B
7
C
9
-0.095
B_DG7:DC9_C
6
2.581
-0.277
0.085
-0.112
-8.112
1
19
B
9
C
7
-0.500
B_DG9:5CM7_C
7
2.721
-0.535
-0.361
-0.125
-10.198
1
19
B
10
C
6
2.876
B_DC10:DG6_C
8
-6.638
0.090
0.435
-0.029
-4.330
1
20
B
11
C
5
1.639
B_DT11:DA5_C
9
-13.472
0.031
0.237
-0.075
-6.147
1
19
B
12
C
4
-2.061
B_DG12:DC4_C
10
-6.685
-0.101
-0.122
-0.179
5.415
1
20
B
13
C
3
3.587
B_DA13:DT3_C
11
-10.974
0.077
0.325
-0.020
10.302
1
20
B
14
C
2
4.126
B_DA14:DT2_C
12
-10.320
0.185
0.207
-0.021
2.720
32.520
B
B
2
3
17.953
C
C
14
13
3.108
9.887
-0.475
-0.636
BB_DC2DA3:DT13DG14_CC
1
3.146
-5.712
30.863
-2.718
1.351
3.064
38.637
B
B
3
4
6.455
C
C
13
12
3.189
4.261
0.455
-0.783
BB_DA3DC4:DG12DT13_CC
2
-1.848
2.799
38.367
-1.687
-0.906
2.775
25.700
B
B
4
5
24.168
C
C
12
11
3.510
10.442
-0.553
-1.001
BB_DC4DA5:DT11DG12_CC
3
1.572
-3.638
23.464
-5.206
1.689
2.780
25.212
B
B
5
6
19.983
C
C
11
10
3.065
8.554
0.127
-0.332
BB_DA5DT6:DA10DT11_CC
4
0.592
-1.382
23.731
-3.066
-0.132
3.412
40.636
B
B
6
7
4.717
C
C
10
9
3.367
3.273
-0.071
0.716
BB_DT6DG7:DC9DA10_CC
5
-0.332
0.478
40.509
0.653
0.064
3.548
35.906
B
B
9
10
-1.849
C
C
7
6
3.476
-1.137
-0.670
-0.677
BB_DG9DC10:DG65CM7_CC
6
-4.165
6.771
35.654
-0.923
0.446
3.105
30.679
B
B
10
11
9.122
C
C
6
5
3.134
4.802
-0.381
0.327
BB_DC10DT11:DA5DG6_CC
7
2.599
-4.938
30.200
-0.291
1.212
2.974
46.783
B
B
11
12
-7.594
C
C
5
4
3.339
-6.015
-0.221
2.806
BB_DT11DG12:DC4DA5_CC
8
-0.254
0.320
46.415
4.019
0.258
3.181
36.610
B
B
12
13
4.219
C
C
4
3
3.064
2.631
-0.338
1.684
BB_DG12DA13:DT3DC4_CC
9
-7.320
11.736
35.802
2.332
-0.433
3.193
32.520
B
B
13
14
12.815
C
C
3
2
3.204
7.121
0.082
0.300
BB_DA13DA14:DT2DT3_CC
10
-0.260
0.468
31.750
-0.698
-0.192
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-12-05
1
1
2012-12-19
1
2
2013-01-02
1
3
2013-01-16
1
4
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of mouse DNMT1(650-1602) in complex with DNA
Crystal structure of mouse DNMT1(731-1602) in the free state
Crystal structure of human DNMT1(646-1600) in complex with DNA
COVALENT TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE, DNA AND S-ADENOSYL-L-HOMOCYSTEINE
HHAI DNA METHYLTRANSFERASE COMPLEX WITH OLIGONUCLEOTIDE CONTAINING 2-AMINOPURINE OPPOSITE TO THE TARGET BASE (GCGC:GMPC) AND SAH
Structure of mouse DNMT1 (731-1602) bound to hemimethylated CpG DNA
RCSB
Y
RCSB
2012-02-03
REL
REL
SAH
S-ADENOSYL-L-HOMOCYSTEINE
GOL
GLYCEROL
HOH
water
AUTHORS STATE THAT THESE ARE NATURAL STRAIN VARIATIONS.
2C7P
PDB entry 2C7P
PDB
experimental model
SAH
1
4
SAH
SAH
501
A
GOL
2
5
GOL
GOL
502
A
HOH
2
6
HOH
HOH
601
A
HOH
3
6
HOH
HOH
602
A
HOH
4
6
HOH
HOH
603
A
HOH
5
6
HOH
HOH
604
A
HOH
7
6
HOH
HOH
605
A
HOH
8
6
HOH
HOH
606
A
HOH
9
6
HOH
HOH
607
A
HOH
10
6
HOH
HOH
608
A
HOH
11
6
HOH
HOH
609
A
HOH
12
6
HOH
HOH
610
A
HOH
13
6
HOH
HOH
611
A
HOH
15
6
HOH
HOH
612
A
HOH
16
6
HOH
HOH
613
A
HOH
17
6
HOH
HOH
614
A
HOH
18
6
HOH
HOH
615
A
HOH
19
6
HOH
HOH
616
A
HOH
20
6
HOH
HOH
617
A
HOH
21
6
HOH
HOH
618
A
HOH
22
6
HOH
HOH
619
A
HOH
23
6
HOH
HOH
620
A
HOH
24
6
HOH
HOH
621
A
HOH
25
6
HOH
HOH
622
A
HOH
26
6
HOH
HOH
623
A
HOH
27
6
HOH
HOH
624
A
HOH
28
6
HOH
HOH
625
A
HOH
29
6
HOH
HOH
626
A
HOH
30
6
HOH
HOH
627
A
HOH
31
6
HOH
HOH
628
A
HOH
32
6
HOH
HOH
629
A
HOH
33
6
HOH
HOH
630
A
HOH
34
6
HOH
HOH
631
A
HOH
37
6
HOH
HOH
632
A
HOH
38
6
HOH
HOH
633
A
HOH
39
6
HOH
HOH
634
A
HOH
40
6
HOH
HOH
635
A
HOH
41
6
HOH
HOH
636
A
HOH
42
6
HOH
HOH
637
A
HOH
43
6
HOH
HOH
638
A
HOH
44
6
HOH
HOH
639
A
HOH
45
6
HOH
HOH
640
A
HOH
46
6
HOH
HOH
641
A
HOH
47
6
HOH
HOH
642
A
HOH
48
6
HOH
HOH
643
A
HOH
49
6
HOH
HOH
644
A
HOH
50
6
HOH
HOH
645
A
HOH
51
6
HOH
HOH
646
A
HOH
52
6
HOH
HOH
647
A
HOH
53
6
HOH
HOH
648
A
HOH
55
6
HOH
HOH
649
A
HOH
56
6
HOH
HOH
650
A
HOH
57
6
HOH
HOH
651
A
HOH
58
6
HOH
HOH
652
A
HOH
59
6
HOH
HOH
653
A
HOH
60
6
HOH
HOH
654
A
HOH
61
6
HOH
HOH
655
A
HOH
62
6
HOH
HOH
656
A
HOH
63
6
HOH
HOH
657
A
HOH
64
6
HOH
HOH
658
A
HOH
65
6
HOH
HOH
659
A
HOH
66
6
HOH
HOH
660
A
HOH
67
6
HOH
HOH
661
A
HOH
68
6
HOH
HOH
662
A
HOH
71
6
HOH
HOH
663
A
HOH
72
6
HOH
HOH
664
A
HOH
74
6
HOH
HOH
665
A
HOH
75
6
HOH
HOH
666
A
HOH
76
6
HOH
HOH
667
A
HOH
77
6
HOH
HOH
668
A
HOH
78
6
HOH
HOH
669
A
HOH
79
6
HOH
HOH
670
A
HOH
80
6
HOH
HOH
671
A
HOH
81
6
HOH
HOH
672
A
HOH
82
6
HOH
HOH
673
A
HOH
83
6
HOH
HOH
674
A
HOH
84
6
HOH
HOH
675
A
HOH
86
6
HOH
HOH
676
A
HOH
87
6
HOH
HOH
677
A
HOH
88
6
HOH
HOH
678
A
HOH
90
6
HOH
HOH
679
A
HOH
91
6
HOH
HOH
680
A
HOH
92
6
HOH
HOH
681
A
HOH
93
6
HOH
HOH
682
A
HOH
94
6
HOH
HOH
683
A
HOH
97
6
HOH
HOH
684
A
HOH
98
6
HOH
HOH
685
A
HOH
99
6
HOH
HOH
686
A
HOH
100
6
HOH
HOH
687
A
HOH
101
6
HOH
HOH
688
A
HOH
102
6
HOH
HOH
689
A
HOH
103
6
HOH
HOH
690
A
HOH
104
6
HOH
HOH
691
A
HOH
106
6
HOH
HOH
692
A
HOH
108
6
HOH
HOH
693
A
HOH
109
6
HOH
HOH
694
A
HOH
110
6
HOH
HOH
695
A
HOH
111
6
HOH
HOH
696
A
HOH
112
6
HOH
HOH
697
A
HOH
113
6
HOH
HOH
698
A
HOH
115
6
HOH
HOH
699
A
HOH
116
6
HOH
HOH
700
A
HOH
118
6
HOH
HOH
701
A
HOH
119
6
HOH
HOH
702
A
HOH
120
6
HOH
HOH
703
A
HOH
123
6
HOH
HOH
704
A
HOH
124
6
HOH
HOH
705
A
HOH
125
6
HOH
HOH
706
A
HOH
126
6
HOH
HOH
707
A
HOH
128
6
HOH
HOH
708
A
HOH
129
6
HOH
HOH
709
A
HOH
130
6
HOH
HOH
710
A
HOH
133
6
HOH
HOH
711
A
HOH
134
6
HOH
HOH
712
A
HOH
135
6
HOH
HOH
713
A
HOH
136
6
HOH
HOH
714
A
HOH
138
6
HOH
HOH
715
A
HOH
139
6
HOH
HOH
716
A
HOH
140
6
HOH
HOH
717
A
HOH
142
6
HOH
HOH
718
A
HOH
143
6
HOH
HOH
719
A
HOH
144
6
HOH
HOH
720
A
HOH
146
6
HOH
HOH
721
A
HOH
147
6
HOH
HOH
722
A
HOH
150
6
HOH
HOH
723
A
HOH
151
6
HOH
HOH
724
A
HOH
152
6
HOH
HOH
725
A
HOH
153
6
HOH
HOH
726
A
HOH
154
6
HOH
HOH
727
A
HOH
156
6
HOH
HOH
728
A
HOH
157
6
HOH
HOH
729
A
HOH
158
6
HOH
HOH
730
A
HOH
159
6
HOH
HOH
731
A
HOH
160
6
HOH
HOH
732
A
HOH
161
6
HOH
HOH
733
A
HOH
162
6
HOH
HOH
734
A
HOH
163
6
HOH
HOH
735
A
HOH
164
6
HOH
HOH
736
A
HOH
165
6
HOH
HOH
737
A
HOH
166
6
HOH
HOH
738
A
HOH
168
6
HOH
HOH
739
A
HOH
169
6
HOH
HOH
740
A
HOH
171
6
HOH
HOH
741
A
HOH
172
6
HOH
HOH
742
A
HOH
173
6
HOH
HOH
743
A
HOH
174
6
HOH
HOH
744
A
HOH
175
6
HOH
HOH
745
A
HOH
177
6
HOH
HOH
746
A
HOH
178
6
HOH
HOH
747
A
HOH
179
6
HOH
HOH
748
A
HOH
180
6
HOH
HOH
749
A
HOH
181
6
HOH
HOH
750
A
HOH
184
6
HOH
HOH
751
A
HOH
185
6
HOH
HOH
752
A
HOH
186
6
HOH
HOH
753
A
HOH
187
6
HOH
HOH
754
A
HOH
188
6
HOH
HOH
755
A
HOH
190
6
HOH
HOH
756
A
HOH
191
6
HOH
HOH
757
A
HOH
192
6
HOH
HOH
758
A
HOH
193
6
HOH
HOH
759
A
HOH
194
6
HOH
HOH
760
A
HOH
195
6
HOH
HOH
761
A
HOH
196
6
HOH
HOH
762
A
HOH
197
6
HOH
HOH
763
A
HOH
198
6
HOH
HOH
764
A
HOH
200
6
HOH
HOH
765
A
HOH
202
6
HOH
HOH
766
A
HOH
204
6
HOH
HOH
767
A
HOH
205
6
HOH
HOH
768
A
HOH
206
6
HOH
HOH
769
A
HOH
207
6
HOH
HOH
770
A
HOH
208
6
HOH
HOH
771
A
HOH
209
6
HOH
HOH
772
A
HOH
210
6
HOH
HOH
773
A
HOH
211
6
HOH
HOH
774
A
HOH
212
6
HOH
HOH
775
A
HOH
214
6
HOH
HOH
776
A
HOH
215
6
HOH
HOH
777
A
HOH
218
6
HOH
HOH
778
A
HOH
219
6
HOH
HOH
779
A
HOH
220
6
HOH
HOH
780
A
HOH
221
6
HOH
HOH
781
A
HOH
222
6
HOH
HOH
782
A
HOH
223
6
HOH
HOH
783
A
HOH
224
6
HOH
HOH
784
A
HOH
225
6
HOH
HOH
785
A
HOH
226
6
HOH
HOH
786
A
HOH
227
6
HOH
HOH
787
A
HOH
228
6
HOH
HOH
788
A
HOH
230
6
HOH
HOH
789
A
HOH
231
6
HOH
HOH
790
A
HOH
232
6
HOH
HOH
791
A
HOH
233
6
HOH
HOH
792
A
HOH
234
6
HOH
HOH
793
A
HOH
235
6
HOH
HOH
794
A
HOH
236
6
HOH
HOH
795
A
HOH
237
6
HOH
HOH
796
A
HOH
239
6
HOH
HOH
797
A
HOH
240
6
HOH
HOH
798
A
HOH
241
6
HOH
HOH
799
A
HOH
243
6
HOH
HOH
800
A
HOH
244
6
HOH
HOH
801
A
HOH
250
6
HOH
HOH
802
A
HOH
252
6
HOH
HOH
803
A
HOH
254
6
HOH
HOH
804
A
HOH
255
6
HOH
HOH
805
A
HOH
256
6
HOH
HOH
806
A
HOH
257
6
HOH
HOH
807
A
HOH
259
6
HOH
HOH
808
A
HOH
261
6
HOH
HOH
809
A
HOH
265
6
HOH
HOH
810
A
HOH
267
6
HOH
HOH
811
A
HOH
268
6
HOH
HOH
812
A
HOH
269
6
HOH
HOH
813
A
HOH
270
6
HOH
HOH
814
A
HOH
271
6
HOH
HOH
815
A
HOH
272
6
HOH
HOH
816
A
HOH
273
6
HOH
HOH
817
A
HOH
274
6
HOH
HOH
818
A
HOH
277
6
HOH
HOH
819
A
HOH
278
6
HOH
HOH
820
A
HOH
279
6
HOH
HOH
821
A
HOH
280
6
HOH
HOH
822
A
HOH
1
6
HOH
HOH
101
B
HOH
14
6
HOH
HOH
102
B
HOH
36
6
HOH
HOH
103
B
HOH
54
6
HOH
HOH
104
B
HOH
70
6
HOH
HOH
105
B
HOH
85
6
HOH
HOH
106
B
HOH
89
6
HOH
HOH
107
B
HOH
96
6
HOH
HOH
108
B
HOH
114
6
HOH
HOH
109
B
HOH
122
6
HOH
HOH
110
B
HOH
127
6
HOH
HOH
111
B
HOH
137
6
HOH
HOH
112
B
HOH
141
6
HOH
HOH
113
B
HOH
155
6
HOH
HOH
114
B
HOH
167
6
HOH
HOH
115
B
HOH
176
6
HOH
HOH
116
B
HOH
189
6
HOH
HOH
117
B
HOH
199
6
HOH
HOH
118
B
HOH
217
6
HOH
HOH
119
B
HOH
229
6
HOH
HOH
120
B
HOH
253
6
HOH
HOH
121
B
HOH
6
6
HOH
HOH
101
C
HOH
35
6
HOH
HOH
102
C
HOH
69
6
HOH
HOH
103
C
HOH
73
6
HOH
HOH
104
C
HOH
105
6
HOH
HOH
105
C
HOH
107
6
HOH
HOH
106
C
HOH
117
6
HOH
HOH
107
C
HOH
121
6
HOH
HOH
108
C
HOH
131
6
HOH
HOH
109
C
HOH
132
6
HOH
HOH
110
C
HOH
145
6
HOH
HOH
111
C
HOH
148
6
HOH
HOH
112
C
HOH
149
6
HOH
HOH
113
C
HOH
170
6
HOH
HOH
114
C
HOH
182
6
HOH
HOH
115
C
HOH
183
6
HOH
HOH
116
C
HOH
201
6
HOH
HOH
117
C
HOH
213
6
HOH
HOH
118
C
HOH
216
6
HOH
HOH
119
C
HOH
258
6
HOH
HOH
120
C
HOH
260
6
HOH
HOH
121
C
HOH
263
6
HOH
HOH
122
C
HOH
264
6
HOH
HOH
123
C
HOH
281
6
HOH
HOH
124
C
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
ASP
6
n
6
ASP
6
A
LYS
7
n
7
LYS
7
A
ILE
8
n
8
ILE
8
A
LYS
9
n
9
LYS
9
A
VAL
10
n
10
VAL
10
A
ILE
11
n
11
ILE
11
A
LYS
12
n
12
LYS
12
A
VAL
13
n
13
VAL
13
A
PHE
14
n
14
PHE
14
A
GLU
15
n
15
GLU
15
A
ALA
16
n
16
ALA
16
A
PHE
17
n
17
PHE
17
A
ALA
18
n
18
ALA
18
A
GLY
19
n
19
GLY
19
A
ILE
20
n
20
ILE
20
A
GLY
21
n
21
GLY
21
A
SER
22
n
22
SER
22
A
GLN
23
n
23
GLN
23
A
PHE
24
n
24
PHE
24
A
LYS
25
n
25
LYS
25
A
ALA
26
n
26
ALA
26
A
LEU
27
n
27
LEU
27
A
LYS
28
n
28
LYS
28
A
ASN
29
n
29
ASN
29
A
ILE
30
n
30
ILE
30
A
ALA
31
n
31
ALA
31
A
ARG
32
n
32
ARG
32
A
SER
33
n
33
SER
33
A
LYS
34
n
34
LYS
34
A
ASN
35
n
35
ASN
35
A
TRP
36
n
36
TRP
36
A
GLU
37
n
37
GLU
37
A
ILE
38
n
38
ILE
38
A
GLN
39
n
39
GLN
39
A
HIS
40
n
40
HIS
40
A
SER
41
n
41
SER
41
A
GLY
42
n
42
GLY
42
A
MET
43
n
43
MET
43
A
VAL
44
n
44
VAL
44
A
GLU
45
n
45
GLU
45
A
TRP
46
n
46
TRP
46
A
PHE
47
n
47
PHE
47
A
VAL
48
n
48
VAL
48
A
ASP
49
n
49
ASP
49
A
ALA
50
n
50
ALA
50
A
ILE
51
n
51
ILE
51
A
VAL
52
n
52
VAL
52
A
SER
53
n
53
SER
53
A
TYR
54
n
54
TYR
54
A
VAL
55
n
55
VAL
55
A
ALA
56
n
56
ALA
56
A
ILE
57
n
57
ILE
57
A
HIS
58
n
58
HIS
58
A
SER
59
n
59
SER
59
A
LYS
60
n
60
LYS
60
A
ASN
61
n
61
ASN
61
A
PHE
62
n
62
PHE
62
A
ASN
63
n
63
ASN
63
A
PRO
64
n
64
PRO
64
A
LYS
65
n
65
LYS
65
A
ILE
66
n
66
ILE
66
A
GLU
67
n
67
GLU
67
A
ARG
68
n
68
ARG
68
A
LEU
69
n
69
LEU
69
A
ASP
70
n
70
ASP
70
A
ARG
71
n
71
ARG
71
A
ASP
72
n
72
ASP
72
A
ILE
73
n
73
ILE
73
A
LEU
74
n
74
LEU
74
A
SER
75
n
75
SER
75
A
ILE
76
n
76
ILE
76
A
SER
77
n
77
SER
77
A
ASN
78
n
78
ASN
78
A
ASP
79
n
79
ASP
79
A
SER
80
n
80
SER
80
A
LYS
81
n
81
LYS
81
A
MET
82
n
82
MET
82
A
PRO
83
n
83
PRO
83
A
ILE
84
n
84
ILE
84
A
SER
85
n
85
SER
85
A
GLU
86
n
86
GLU
86
A
TYR
87
n
87
TYR
87
A
GLY
88
n
88
GLY
88
A
ILE
89
n
89
ILE
89
A
LYS
90
n
90
LYS
90
A
LYS
91
n
91
LYS
91
A
ILE
92
n
92
ILE
92
A
ASN
93
n
93
ASN
93
A
ASN
94
n
94
ASN
94
A
THR
95
n
95
THR
95
A
ILE
96
n
96
ILE
96
A
LYS
97
n
97
LYS
97
A
ALA
98
n
98
ALA
98
A
SER
99
n
99
SER
99
A
TYR
100
n
100
TYR
100
A
LEU
101
n
101
LEU
101
A
ASN
102
n
102
ASN
102
A
TYR
103
n
103
TYR
103
A
ALA
104
n
104
ALA
104
A
LYS
105
n
105
LYS
105
A
LYS
106
n
106
LYS
106
A
HIS
107
n
107
HIS
107
A
PHE
108
n
108
PHE
108
A
ASN
109
n
109
ASN
109
A
ASN
110
n
110
ASN
110
A
LEU
111
n
111
LEU
111
A
PHE
112
n
112
PHE
112
A
ASP
113
n
113
ASP
113
A
ILE
114
n
114
ILE
114
A
LYS
115
n
115
LYS
115
A
LYS
116
n
116
LYS
116
A
VAL
117
n
117
VAL
117
A
ASN
118
n
118
ASN
118
A
LYS
119
n
119
LYS
119
A
ASP
120
n
120
ASP
120
A
ASN
121
n
121
ASN
121
A
PHE
122
n
122
PHE
122
A
PRO
123
n
123
PRO
123
A
LYS
124
n
124
LYS
124
A
ASN
125
n
125
ASN
125
A
ILE
126
n
126
ILE
126
A
ASP
127
n
127
ASP
127
A
ILE
128
n
128
ILE
128
A
PHE
129
n
129
PHE
129
A
THR
130
n
130
THR
130
A
TYR
131
n
131
TYR
131
A
SER
132
n
132
SER
132
A
PHE
133
n
133
PHE
133
A
PRO
134
n
134
PRO
134
A
CYS
135
n
135
CYS
135
A
GLN
136
n
136
GLN
136
A
ASP
137
n
137
ASP
137
A
LEU
138
n
138
LEU
138
A
SER
139
n
139
SER
139
A
VAL
140
n
140
VAL
140
A
GLN
141
n
141
GLN
141
A
GLY
142
n
142
GLY
142
A
LEU
143
n
143
LEU
143
A
GLN
144
n
144
GLN
144
A
LYS
145
n
145
LYS
145
A
GLY
146
n
146
GLY
146
A
ILE
147
n
147
ILE
147
A
ASP
148
n
148
ASP
148
A
LYS
149
n
149
LYS
149
A
GLU
150
n
150
GLU
150
A
LEU
151
n
151
LEU
151
A
ASN
152
n
152
ASN
152
A
THR
153
n
153
THR
153
A
ARG
154
n
154
ARG
154
A
SER
155
n
155
SER
155
A
GLY
156
n
156
GLY
156
A
LEU
157
n
157
LEU
157
A
LEU
158
n
158
LEU
158
A
TRP
159
n
159
TRP
159
A
GLU
160
n
160
GLU
160
A
ILE
161
n
161
ILE
161
A
GLU
162
n
162
GLU
162
A
ARG
163
n
163
ARG
163
A
ILE
164
n
164
ILE
164
A
LEU
165
n
165
LEU
165
A
GLU
166
n
166
GLU
166
A
GLU
167
n
167
GLU
167
A
ILE
168
n
168
ILE
168
A
LYS
169
n
169
LYS
169
A
ASN
170
n
170
ASN
170
A
SER
171
n
171
SER
171
A
PHE
172
n
172
PHE
172
A
SER
173
n
173
SER
173
A
LYS
174
n
174
LYS
174
A
GLU
175
n
175
GLU
175
A
GLU
176
n
176
GLU
176
A
MET
177
n
177
MET
177
A
PRO
178
n
178
PRO
178
A
LYS
179
n
179
LYS
179
A
TYR
180
n
180
TYR
180
A
LEU
181
n
181
LEU
181
A
LEU
182
n
182
LEU
182
A
MET
183
n
183
MET
183
A
GLU
184
n
184
GLU
184
A
ASN
185
n
185
ASN
185
A
VAL
186
n
186
VAL
186
A
LYS
187
n
187
LYS
187
A
ASN
188
n
188
ASN
188
A
LEU
189
n
189
LEU
189
A
LEU
190
n
190
LEU
190
A
SER
191
n
191
SER
191
A
HIS
192
n
192
HIS
192
A
LYS
193
n
193
LYS
193
A
ASN
194
n
194
ASN
194
A
LYS
195
n
195
LYS
195
A
LYS
196
n
196
LYS
196
A
ASN
197
n
197
ASN
197
A
TYR
198
n
198
TYR
198
A
ASN
199
n
199
ASN
199
A
THR
200
n
200
THR
200
A
TRP
201
n
201
TRP
201
A
LEU
202
n
202
LEU
202
A
LYS
203
n
203
LYS
203
A
GLN
204
n
204
GLN
204
A
LEU
205
n
205
LEU
205
A
GLU
206
n
206
GLU
206
A
LYS
207
n
207
LYS
207
A
PHE
208
n
208
PHE
208
A
GLY
209
n
209
GLY
209
A
TYR
210
n
210
TYR
210
A
LYS
211
n
211
LYS
211
A
SER
212
n
212
SER
212
A
LYS
213
n
213
LYS
213
A
THR
214
n
214
THR
214
A
TYR
215
n
215
TYR
215
A
LEU
216
n
216
LEU
216
A
LEU
217
n
217
LEU
217
A
ASN
218
n
218
ASN
218
A
SER
219
n
219
SER
219
A
LYS
220
n
220
LYS
220
A
ASN
221
n
221
ASN
221
A
PHE
222
n
222
PHE
222
A
ASP
223
n
223
ASP
223
A
ASN
224
n
224
ASN
224
A
CYS
225
n
225
CYS
225
A
GLN
226
n
226
GLN
226
A
ASN
227
n
227
ASN
227
A
ARG
228
n
228
ARG
228
A
GLU
229
n
229
GLU
229
A
ARG
230
n
230
ARG
230
A
VAL
231
n
231
VAL
231
A
PHE
232
n
232
PHE
232
A
CYS
233
n
233
CYS
233
A
LEU
234
n
234
LEU
234
A
SER
235
n
235
SER
235
A
ILE
236
n
236
ILE
236
A
ARG
237
n
237
ARG
237
A
ASP
238
n
238
ASP
238
A
ASP
239
n
239
ASP
239
A
TYR
240
n
240
TYR
240
A
LEU
241
n
241
LEU
241
A
GLU
242
n
242
GLU
242
A
LYS
243
n
243
LYS
243
A
THR
244
n
244
THR
244
A
GLY
245
n
245
GLY
245
A
PHE
246
n
246
PHE
246
A
LYS
247
n
247
LYS
247
A
PHE
248
n
248
PHE
248
A
LYS
249
n
249
LYS
249
A
GLU
250
n
250
GLU
250
A
LEU
251
n
251
LEU
251
A
GLU
252
n
252
GLU
252
A
LYS
253
n
253
LYS
253
A
VAL
254
n
254
VAL
254
A
LYS
255
n
255
LYS
255
A
ASN
256
n
256
ASN
256
A
PRO
257
n
257
PRO
257
A
PRO
258
n
258
PRO
258
A
LYS
259
n
259
LYS
259
A
LYS
260
n
260
LYS
260
A
ILE
261
n
261
ILE
261
A
LYS
262
n
262
LYS
262
A
ASP
263
n
263
ASP
263
A
ILE
264
n
264
ILE
264
A
LEU
265
n
265
LEU
265
A
VAL
266
n
266
VAL
266
A
ASP
267
n
267
ASP
267
A
SER
268
n
268
SER
268
A
SER
269
n
269
SER
269
A
ASN
270
n
270
ASN
270
A
TYR
271
n
271
TYR
271
A
LYS
272
n
272
LYS
272
A
TYR
273
n
273
TYR
273
A
LEU
274
n
274
LEU
274
A
ASN
275
n
275
ASN
275
A
LEU
276
n
276
LEU
276
A
ASN
277
n
277
ASN
277
A
LYS
278
n
278
LYS
278
A
TYR
279
n
279
TYR
279
A
GLU
280
n
280
GLU
280
A
THR
281
n
281
THR
281
A
THR
282
n
282
THR
282
A
THR
283
n
283
THR
283
A
PHE
284
n
284
PHE
284
A
ARG
285
n
285
ARG
285
A
GLU
286
n
286
GLU
286
A
THR
287
n
287
THR
287
A
LYS
288
n
288
LYS
288
A
SER
289
n
289
SER
289
A
ASN
290
n
290
ASN
290
A
ILE
291
n
291
ILE
291
A
ILE
292
n
292
ILE
292
A
SER
293
n
293
SER
293
A
ARG
294
n
294
ARG
294
A
PRO
295
n
295
PRO
295
A
LEU
296
n
296
LEU
296
A
LYS
297
n
297
LYS
297
A
ASN
298
n
298
ASN
298
A
TYR
299
n
299
TYR
299
A
THR
300
n
300
THR
300
A
THR
301
n
301
THR
301
A
PHE
302
n
302
PHE
302
A
ASN
303
n
303
ASN
303
A
SER
304
n
304
SER
304
A
GLU
305
n
305
GLU
305
A
ASN
306
n
306
ASN
306
A
TYR
307
n
307
TYR
307
A
VAL
308
n
308
VAL
308
A
TYR
309
n
309
TYR
309
A
ASN
310
n
310
ASN
310
A
ILE
311
n
311
ILE
311
A
ASN
312
n
312
ASN
312
A
GLY
313
n
313
GLY
313
A
ILE
314
n
314
ILE
314
A
GLY
315
n
315
GLY
315
A
PRO
316
n
316
PRO
316
A
THR
317
n
317
THR
317
A
LEU
318
n
318
LEU
318
A
THR
319
n
319
THR
319
A
ALA
320
n
320
ALA
320
A
SER
321
n
321
SER
321
A
GLY
322
n
322
GLY
322
A
ALA
323
n
323
ALA
323
A
ASN
324
n
324
ASN
324
A
SER
325
n
325
SER
325
A
ARG
326
n
326
ARG
326
A
ILE
327
n
327
ILE
327
A
LYS
328
n
328
LYS
328
A
ILE
329
n
329
ILE
329
A
GLU
330
n
330
GLU
330
A
THR
331
n
331
THR
331
A
GLN
332
n
332
GLN
332
A
GLN
333
n
333
GLN
333
A
GLY
334
n
334
GLY
334
A
VAL
335
n
335
VAL
335
A
ARG
336
n
336
ARG
336
A
TYR
337
n
337
TYR
337
A
LEU
338
n
338
LEU
338
A
THR
339
n
339
THR
339
A
PRO
340
n
340
PRO
340
A
LEU
341
n
341
LEU
341
A
GLU
342
n
342
GLU
342
A
CYS
343
n
343
CYS
343
A
PHE
344
n
344
PHE
344
A
LYS
345
n
345
LYS
345
A
TYR
346
n
346
TYR
346
A
MET
347
n
347
MET
347
A
GLN
348
n
348
GLN
348
A
PHE
349
n
349
PHE
349
A
ASP
350
n
350
ASP
350
A
VAL
351
n
351
VAL
351
A
ASN
352
n
352
ASN
352
A
ASP
353
n
353
ASP
353
A
PHE
354
n
354
PHE
354
A
LYS
355
n
355
LYS
355
A
LYS
356
n
356
LYS
356
A
VAL
357
n
357
VAL
357
A
GLN
358
n
358
GLN
358
A
SER
359
n
359
SER
359
A
THR
360
n
360
THR
360
A
ASN
361
n
361
ASN
361
A
LEU
362
n
362
LEU
362
A
ILE
363
n
363
ILE
363
A
SER
364
n
364
SER
364
A
GLU
365
n
365
GLU
365
A
ASN
366
n
366
ASN
366
A
LYS
367
n
367
LYS
367
A
MET
368
n
368
MET
368
A
ILE
369
n
369
ILE
369
A
TYR
370
n
370
TYR
370
A
ILE
371
n
371
ILE
371
A
ALA
372
n
372
ALA
372
A
GLY
373
n
373
GLY
373
A
ASN
374
n
374
ASN
374
A
SER
375
n
375
SER
375
A
ILE
376
n
376
ILE
376
A
PRO
377
n
377
PRO
377
A
VAL
378
n
378
VAL
378
A
LYS
379
n
379
LYS
379
A
ILE
380
n
380
ILE
380
A
LEU
381
n
381
LEU
381
A
GLU
382
n
382
GLU
382
A
ALA
383
n
383
ALA
383
A
ILE
384
n
384
ILE
384
A
PHE
385
n
385
PHE
385
A
ASN
386
n
386
ASN
386
A
THR
387
n
387
THR
387
A
LEU
388
n
388
LEU
388
A
GLU
389
n
389
GLU
389
A
PHE
390
n
390
PHE
390
A
VAL
391
n
391
VAL
391
A
ASN
392
n
392
ASN
392
A
ASN
393
n
393
ASN
393
A
n
394
394
A
n
395
395
A
n
396
396
A
n
397
397
A
n
398
398
A
n
399
399
A
n
400
400
A
n
401
401
A
n
402
402
A
n
403
403
A
C
1
n
1
DC
1
B
C
2
n
2
DC
2
B
A
3
n
3
DA
3
B
C
4
n
4
DC
4
B
A
5
n
5
DA
5
B
T
6
n
6
DT
6
B
G
7
n
7
DG
7
B
C37
8
n
8
C37
8
B
G
9
n
9
DG
9
B
C
10
n
10
DC
10
B
T
11
n
11
DT
11
B
G
12
n
12
DG
12
B
A
13
n
13
DA
13
B
A
14
n
14
DA
14
B
G
1
n
1
DG
1
C
T
2
n
2
DT
2
C
T
3
n
3
DT
3
C
C
4
n
4
DC
4
C
A
5
n
5
DA
5
C
G
6
n
6
DG
6
C
5CM
7
n
7
5CM
7
C
G
8
n
8
DG
8
C
C
9
n
9
DC
9
C
A
10
n
10
DA
10
C
T
11
n
11
DT
11
C
G
12
n
12
DG
12
C
T
13
n
13
DT
13
C
G
14
n
14
DG
14
C
1.3285
0.7139
0.0899
1.8304
0.2160
1.4460
0.1138
-0.2095
0.1597
0.0245
-0.0982
0.0650
-0.1703
0.1231
-0.0156
-0.0916
-0.0668
0.0118
-0.0382
-0.0230
-0.0857
refined
25.8750
30.8230
49.2440
X-RAY DIFFRACTION
0.9724
0.6691
-0.1999
2.2069
0.0468
0.7196
-0.0188
-0.0366
-0.0063
-0.1209
-0.0562
0.1295
0.0652
-0.0767
0.0749
-0.0695
-0.0421
-0.0339
-0.0185
0.0294
-0.0260
refined
12.6010
9.2560
40.5430
X-RAY DIFFRACTION
1.3002
-0.0789
0.4393
1.9057
-0.0269
2.1045
0.1105
-0.0305
-0.0781
-0.0129
0.0146
-0.2426
0.1346
0.3025
-0.1251
-0.0503
0.0155
0.0014
0.0055
0.0614
-0.0227
refined
29.0600
5.7600
43.5620
X-RAY DIFFRACTION
A
6
A
259
X-RAY DIFFRACTION
1
A
376
A
393
X-RAY DIFFRACTION
1
A
260
A
375
X-RAY DIFFRACTION
2
B
1
B
14
X-RAY DIFFRACTION
3
C
1
C
14
X-RAY DIFFRACTION
3
author_and_software_defined_assembly
PISA
3
trimeric
5500
-21
20580
B
C37
8
B
C37
8
DC
C
5CM
7
C
5CM
7
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
37
A
O
GLU
37
A
N
ILE
11
A
N
ILE
11
A
N
PHE
14
A
N
PHE
14
A
O
ILE
128
A
O
ILE
128
A
N
PHE
129
A
N
PHE
129
A
O
TYR
180
A
O
TYR
180
A
N
LEU
181
A
N
LEU
181
A
O
SER
235
A
O
SER
235
A
O
ILE
236
A
O
ILE
236
A
N
LYS
211
A
N
LYS
211
A
N
ARG
285
A
N
ARG
285
A
O
SER
293
A
O
SER
293
A
N
ILE
292
A
N
ILE
292
A
O
ASN
310
A
O
ASN
310
A
N
TYR
309
A
N
TYR
309
A
O
LYS
328
A
O
LYS
328
A
N
ILE
329
A
N
ILE
329
A
O
ARG
336
A
O
ARG
336
1
A
HOH
785
F
HOH
1
A
MET
1
A
MET
1
1
Y
1
A
ASN
2
A
ASN
2
1
Y
1
A
SER
3
A
SER
3
1
Y
1
A
ASN
4
A
ASN
4
1
Y
1
A
LYS
5
A
LYS
5
1
Y
1
A
GLU
394
A
GLU
394
1
Y
1
A
GLU
395
A
GLU
395
1
Y
1
A
LEU
396
A
LEU
396
1
Y
1
A
GLU
397
A
GLU
397
1
Y
1
A
HIS
398
A
HIS
398
1
Y
1
A
HIS
399
A
HIS
399
1
Y
1
A
HIS
400
A
HIS
400
1
Y
1
A
HIS
401
A
HIS
401
1
Y
1
A
HIS
402
A
HIS
402
1
Y
1
A
HIS
403
A
HIS
403
1
Y
1
-6.15
1.00
110.10
103.95
B
B
B
C1'
O4'
C4'
DT
DT
DT
6
6
6
N
1
A
LYS
60
B
-90.96
-74.93
1
A
ASN
61
B
-116.42
61.93
1
A
SER
80
85.45
-9.66
1
A
SER
80
85.45
-7.65
1
A
PHE
112
69.26
-66.17
1
A
ASN
290
81.89
13.18
0.954
0.935
(1) THE CRYSTAL WAS GROWN IN THE PRESENCE OF A SAMPLE THAT WAS LABELLED AS S-ADENOSYL-METHIONINE (SAM), BUT APPEARS TO HAVE BEEN DEGRADED TO S-ADENOSYL-HOMOCYSTEINE (SAH) EITHER PRIOR TO OR DURING CRYSTALLIZATION. PROGRAM CNS HAS BEEN USED FOR DNA REFINEMENT. NO SUGAR PUCKER CONSTRAINTS HAVE BEEN APPLIED. (2) THE MODELLED S-ADENOSYLHOMOCYSTEINE (SAH) IS UNCERTAIN. ITS BINDING SITE MIGHT BE OCCUPIED IN PART BY S-ADENOSYLMETHIONINE (SAM) OR THE SAM DEGRADATION PRODUCT 5 -METHYLTHIOADENOSINE (MTA) (FROM SCISSION OF SAM TO MTA AND HOMOSERINE LACTONE). THE DISTANCE BETWEEN CYS135 S AND C6 OF THE SUBSTRATE CYTOSINE BASE IS INTERMEDIATE BETWEEN A NON-COVALENT AND A COVALENT BOND. A DISTANCE BELOW THE VAN DER WAALS LIMIT SUGGESTS THAT SLIGHT DEVIATIONS FROM THE PLANARITY OF THE DNA BASE SHOULD OCCUR. AS THE RESOLUTION OF THE X-RAY DATA IS INSUFFICIENT TO DETECT SUCH DEVIATIONS, THEY WERE NOT MODELLED. (3) HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. TLS REFINEMENT HAS BEEN USED.
0.21631
0.17632
0.17832
0.17832
2.15
38.60
1729
34274
34274
5.0
98.96
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.214
0.176
0.80
0.80
1.40
PDB entry 2C7P
MAXIMUM LIKELIHOOD
MASK
2.15
38.60
267
4068
32
570
3199
0.010
0.022
4388
0.000
0.020
2941
1.253
2.131
6064
3.966
3.000
7256
6.160
5.000
471
38.254
25.301
183
15.063
15.000
767
15.209
15.000
17
0.007
0.020
4548
0.007
0.020
810
0.192
0.200
771
0.232
0.200
2985
0.181
0.200
2059
0.108
0.200
1868
0.137
0.200
258
0.079
0.200
14
0.380
0.200
15
0.084
0.200
3
0.288
0.203
2.206
138
2348
2486
20
99.92
33.4
2.15
40.000
4DKJ
34324
34324
0.078
0.078
1
5.5
3.9
99.3
0.31
2.15
2.27
2.5
4957
0.31
1
4.0
99.9
data collection
ADSC
Quantum
phasing
MOLREP
model building
CHAINSAW
refinement
REFMAC
model building
ARP/wARP
data reduction
MOSFLM
data scaling
SCALA
phasing
CHAINSAW
phasing
REFMAC
CpG specific methyltransferase in complex with target DNA
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
AUTHORS STATE THAT THE BIOLOGICAL UNIT CONTAINS PROTEIN CHAIN A, AND DNA STRANDS B AND C. THE TRIMER (ACCORDING TO PDB CONVENTIONS) IS A COMPLEX OF THE MONOMERIC METHYLTRANSFERASE WITH ITS SUBSTRATE, DOUBLE STRANDED DNA.
A
GLY
21
A
GLY
21
HELX_P
A
ALA
31
A
ALA
31
1
1
11
A
ARG
32
A
ARG
32
HELX_P
A
LYS
34
A
LYS
34
5
2
3
A
PHE
47
A
PHE
47
HELX_P
A
SER
59
A
SER
59
1
3
13
A
SER
85
A
SER
85
HELX_P
A
ASN
93
A
ASN
93
1
4
9
A
THR
95
A
THR
95
HELX_P
A
PHE
108
A
PHE
108
1
5
14
A
ASP
113
A
ASP
113
HELX_P
A
VAL
117
A
VAL
117
5
6
5
A
ASP
148
A
ASP
148
HELX_P
A
ASN
152
A
ASN
152
5
7
5
A
ARG
154
A
ARG
154
HELX_P
A
GLY
156
A
GLY
156
5
8
3
A
LEU
157
A
LEU
157
HELX_P
A
PHE
172
A
PHE
172
1
9
16
A
SER
173
A
SER
173
HELX_P
A
MET
177
A
MET
177
5
10
5
A
ASN
188
A
ASN
188
HELX_P
A
LEU
190
A
LEU
190
5
11
3
A
SER
191
A
SER
191
HELX_P
A
PHE
208
A
PHE
208
1
12
18
A
LYS
220
A
LYS
220
HELX_P
A
PHE
222
A
PHE
222
5
13
3
A
ASP
238
A
ASP
238
HELX_P
A
GLY
245
A
GLY
245
1
14
8
A
GLU
250
A
GLU
250
HELX_P
A
VAL
254
A
VAL
254
5
15
5
A
LYS
260
A
LYS
260
HELX_P
A
LEU
265
A
LEU
265
5
16
6
A
PHE
302
A
PHE
302
HELX_P
A
GLU
305
A
GLU
305
5
17
4
A
GLY
322
A
GLY
322
HELX_P
A
ARG
326
A
ARG
326
5
18
5
A
THR
339
A
THR
339
HELX_P
A
MET
347
A
MET
347
1
19
9
A
ASP
350
A
ASP
350
HELX_P
A
THR
360
A
THR
360
1
20
11
A
SER
364
A
SER
364
HELX_P
A
ASN
374
A
ASN
374
1
21
11
A
PRO
377
A
PRO
377
HELX_P
A
THR
387
A
THR
387
1
22
11
covale
1.605
both
B
DG
7
B
O3'
DG
7
1_555
B
C37
8
B
P
C37
8
1_555
covale
1.610
one
B
C37
8
B
O3'
C37
8
1_555
B
DG
9
B
P
DG
9
1_555
covale
1.606
both
C
DG
6
C
O3'
DG
6
1_555
C
5CM
7
C
P
5CM
7
1_555
covale
1.615
both
C
5CM
7
C
O3'
5CM
7
1_555
C
DG
8
C
P
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
2
B
N3
DC
2
1_555
C
DG
14
C
N1
DG
14
1_555
hydrog
WATSON-CRICK
B
DC
2
B
N4
DC
2
1_555
C
DG
14
C
O6
DG
14
1_555
hydrog
WATSON-CRICK
B
DC
2
B
O2
DC
2
1_555
C
DG
14
C
N2
DG
14
1_555
hydrog
WATSON-CRICK
B
DA
3
B
N1
DA
3
1_555
C
DT
13
C
N3
DT
13
1_555
hydrog
WATSON-CRICK
B
DA
3
B
N6
DA
3
1_555
C
DT
13
C
O4
DT
13
1_555
hydrog
WATSON-CRICK
B
DC
4
B
N3
DC
4
1_555
C
DG
12
C
N1
DG
12
1_555
hydrog
WATSON-CRICK
B
DC
4
B
N4
DC
4
1_555
C
DG
12
C
O6
DG
12
1_555
hydrog
WATSON-CRICK
B
DC
4
B
O2
DC
4
1_555
C
DG
12
C
N2
DG
12
1_555
hydrog
WATSON-CRICK
B
DA
5
B
N1
DA
5
1_555
C
DT
11
C
N3
DT
11
1_555
hydrog
WATSON-CRICK
B
DA
5
B
N6
DA
5
1_555
C
DT
11
C
O4
DT
11
1_555
hydrog
WATSON-CRICK
B
DT
6
B
N3
DT
6
1_555
C
DA
10
C
N1
DA
10
1_555
hydrog
WATSON-CRICK
B
DT
6
B
O4
DT
6
1_555
C
DA
10
C
N6
DA
10
1_555
hydrog
WATSON-CRICK
B
DG
7
B
N1
DG
7
1_555
C
DC
9
C
N3
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
7
B
N2
DG
7
1_555
C
DC
9
C
O2
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
7
B
O6
DG
7
1_555
C
DC
9
C
N4
DC
9
1_555
hydrog
WATSON-CRICK
B
DG
9
B
N1
DG
9
1_555
C
5CM
7
C
N3
5CM
7
1_555
hydrog
WATSON-CRICK
B
DG
9
B
N2
DG
9
1_555
C
5CM
7
C
O2
5CM
7
1_555
hydrog
WATSON-CRICK
B
DG
9
B
O6
DG
9
1_555
C
5CM
7
C
N4
5CM
7
1_555
hydrog
WATSON-CRICK
B
DC
10
B
N3
DC
10
1_555
C
DG
6
C
N1
DG
6
1_555
hydrog
WATSON-CRICK
B
DC
10
B
N4
DC
10
1_555
C
DG
6
C
O6
DG
6
1_555
hydrog
WATSON-CRICK
B
DC
10
B
O2
DC
10
1_555
C
DG
6
C
N2
DG
6
1_555
hydrog
WATSON-CRICK
B
DT
11
B
N3
DT
11
1_555
C
DA
5
C
N1
DA
5
1_555
hydrog
WATSON-CRICK
B
DT
11
B
O4
DT
11
1_555
C
DA
5
C
N6
DA
5
1_555
hydrog
WATSON-CRICK
B
DG
12
B
N1
DG
12
1_555
C
DC
4
C
N3
DC
4
1_555
hydrog
WATSON-CRICK
B
DG
12
B
N2
DG
12
1_555
C
DC
4
C
O2
DC
4
1_555
hydrog
WATSON-CRICK
B
DG
12
B
O6
DG
12
1_555
C
DC
4
C
N4
DC
4
1_555
hydrog
WATSON-CRICK
B
DA
13
B
N1
DA
13
1_555
C
DT
3
C
N3
DT
3
1_555
hydrog
WATSON-CRICK
B
DA
13
B
N6
DA
13
1_555
C
DT
3
C
O4
DT
3
1_555
hydrog
WATSON-CRICK
B
DA
14
B
N1
DA
14
1_555
C
DT
2
C
N3
DT
2
1_555
hydrog
WATSON-CRICK
B
DA
14
B
N6
DA
14
1_555
C
DT
2
C
O4
DT
2
1_555
TRANSFERASE/DNA
CG-SPECIFICITY, DNA INTERCALATION, CPG SEQUENCE, CYTOSINE C5-METHYLATION, C5-METHYLCYTOSINE, NUCLEOTIDE FLIPPING, S-adenosyl-L-methionine-dependent methyltransferases, C-5 cytosine-specific DNA methylases, DNA (cytosine-5-)-methyltransferase activity, DNA binding, DNA (cytosine-5-)-methylation, intracellular, TRANSFERASE-DNA complex
Q8EVR5_MYCPE
UNP
1
1
Q8EVR5
MNSNKDKIKVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIEQLDKDILSISNDS
KMPISEYGIKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFPKNIDIFTYSFPCQDLSVQGLQKGIDKELNTRSGLLWE
IERILEEIKNSFSKEEMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDY
LEKTGFKFKELEKVKNPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRSLKNYTTFNSENYVYNINGIGPTLTA
SGANSRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNEE
4DKJ
PDB
2
4DKJ
4DKJ
PDB
3
4DKJ
1
395
4DKJ
1
395
Q8EVR5
A
1
1
395
1
14
4DKJ
1
14
4DKJ
B
2
1
14
1
14
4DKJ
1
14
4DKJ
C
3
1
14
1
GLN
SEE REMARK 999
ARG
68
4DKJ
A
Q8EVR5
UNP
68
68
1
LYS
SEE REMARK 999
ARG
71
4DKJ
A
Q8EVR5
UNP
71
71
1
SER
engineered mutation
PRO
295
4DKJ
A
Q8EVR5
UNP
295
295
1
expression tag
LEU
396
4DKJ
A
Q8EVR5
UNP
396
1
expression tag
GLU
397
4DKJ
A
Q8EVR5
UNP
397
1
expression tag
HIS
398
4DKJ
A
Q8EVR5
UNP
398
1
expression tag
HIS
399
4DKJ
A
Q8EVR5
UNP
399
1
expression tag
HIS
400
4DKJ
A
Q8EVR5
UNP
400
1
expression tag
HIS
401
4DKJ
A
Q8EVR5
UNP
401
1
expression tag
HIS
402
4DKJ
A
Q8EVR5
UNP
402
1
expression tag
HIS
403
4DKJ
A
Q8EVR5
UNP
403
6
5
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
A
TRP
36
A
TRP
36
A
VAL
44
A
VAL
44
A
LYS
9
A
LYS
9
A
ALA
16
A
ALA
16
A
ILE
128
A
ILE
128
A
TYR
131
A
TYR
131
A
TYR
180
A
TYR
180
A
VAL
186
A
VAL
186
A
GLU
229
A
GLU
229
A
ARG
237
A
ARG
237
A
TYR
210
A
TYR
210
A
ASN
218
A
ASN
218
A
ARG
285
A
ARG
285
A
GLU
286
A
GLU
286
A
ILE
292
A
ILE
292
A
PRO
295
A
PRO
295
A
TYR
307
A
TYR
307
A
ASN
310
A
ASN
310
A
LYS
328
A
LYS
328
A
THR
331
A
THR
331
A
GLY
334
A
GLY
334
A
TYR
337
A
TYR
337
BINDING SITE FOR RESIDUE SAH A 501
A
SAH
501
Software
23
BINDING SITE FOR RESIDUE GOL A 502
A
GOL
502
Software
9
A
PHE
17
A
PHE
17
23
1_555
A
ALA
18
A
ALA
18
23
1_555
A
GLY
19
A
GLY
19
23
1_555
A
ILE
20
A
ILE
20
23
1_555
A
GLY
21
A
GLY
21
23
1_555
A
SER
22
A
SER
22
23
1_555
A
GLN
23
A
GLN
23
23
1_555
A
GLU
45
A
GLU
45
23
1_555
A
TRP
46
A
TRP
46
23
1_555
A
PHE
47
A
PHE
47
23
1_555
A
SER
80
A
SER
80
23
1_555
A
PHE
112
A
PHE
112
23
1_555
A
ASP
113
A
ASP
113
23
1_555
A
ILE
114
A
ILE
114
23
1_555
A
SER
132
A
SER
132
23
1_555
A
ARG
154
A
ARG
154
23
1_555
A
LEU
157
A
LEU
157
23
1_555
A
ASN
374
A
ASN
374
23
1_555
A
SER
375
A
SER
375
23
1_555
A
HOH
612
F
HOH
23
1_555
A
HOH
625
F
HOH
23
1_555
A
HOH
655
F
HOH
23
1_555
B
C37
8
B
C37
8
23
1_555
A
TYR
337
A
TYR
337
9
1_555
A
ASN
366
A
ASN
366
9
1_555
A
ILE
369
A
ILE
369
9
1_555
A
HOH
613
F
HOH
9
1_555
A
HOH
616
F
HOH
9
1_555
A
HOH
633
F
HOH
9
1_555
A
HOH
650
F
HOH
9
1_555
A
HOH
651
F
HOH
9
1_555
C
DA
5
C
DA
5
9
1_555
92
P 41 21 2