0.018144 0.000000 0.008573 0.000000 0.026989 0.000000 0.000000 0.000000 0.017054 0.00000 0.00000 0.00000 Bhowmick, T. Ramagopal, U.A. Ghosh, S. Nagaraja, V. Ramakumar, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 115.29 90.00 55.115 37.052 64.854 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mn 2 54.938 MANGANESE (II) ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N MN N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C Y 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C N 265 N C N 266 N C N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C N 282 N O N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 R C N 296 N O N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C N 313 N C N 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing UK Nat Commun 2041-1723 5 4124 4124 10.1038/ncomms5124 24916461 Targeting Mycobacterium tuberculosis nucleoid-associated protein HU with structure-based inhibitors 2014 10.2210/pdb4dky/pdb pdb_00004dky 100 1 Mirrors CCD 2010-10-29 ADSC QUANTUM 315 Double Crystal Monochromator (Cryogenically cooled) SINGLE WAVELENGTH M x-ray 1 0.979 1.0 X29A NSLS 0.979 SYNCHROTRON NSLS BEAMLINE X29A 11598.211 DNA-binding protein HU homolog N-terminal Bacterial histone-like domain, UNP residues 1-100 2 man polymer 54.938 MANGANESE (II) ION 2 syn non-polymer 18.015 water 42 nat water no no MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPTSVPAFR PGAQFKAVVSGAQRLPAEGPHHHHHH MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPTSVPAFR PGAQFKAVVSGAQRLPAEGPHHHHHH A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 106 hupB 419947 Mycobacterium tuberculosis H37Ra 562 Escherichia coli BL21(DE3)plysS Plasmid Biological sequence pET20b 1 2.58 52.35 VAPOR DIFFUSION, HANGING DROP 6.7 0.1M Tris-HCl, pH 6.7, 2.5M sodium formate, 10mM MnCl2, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 database_2 entity_name_com entity_src_gen pdbx_database_related struct struct_conn struct_ref struct_ref_seq struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Database references Database references Derived calculations Source and taxonomy Structure summary Data collection Refinement description 1 0 2013-02-06 1 1 2014-08-27 1 2 2023-07-26 1 3 2023-11-08 _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity_src_gen.gene_src_strain _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_seq_type _pdbx_database_related.details _struct.title _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref_seq.pdbx_db_accession _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2012-02-05 REL REL MN MANGANESE (II) ION HOH water 3C4I PDB ENTRY 3C4I PDB experimental model MN 98 2 MN MN 201 A MN 105 2 MN MN 201 B HOH 1 3 HOH HOH 301 A HOH 3 3 HOH HOH 302 A HOH 4 3 HOH HOH 303 A HOH 6 3 HOH HOH 304 A HOH 8 3 HOH HOH 305 A HOH 9 3 HOH HOH 306 A HOH 10 3 HOH HOH 307 A HOH 11 3 HOH HOH 308 A HOH 12 3 HOH HOH 309 A HOH 17 3 HOH HOH 310 A HOH 18 3 HOH HOH 311 A HOH 19 3 HOH HOH 312 A HOH 20 3 HOH HOH 313 A HOH 21 3 HOH HOH 314 A HOH 22 3 HOH HOH 315 A HOH 23 3 HOH HOH 316 A HOH 25 3 HOH HOH 317 A HOH 27 3 HOH HOH 318 A HOH 28 3 HOH HOH 319 A HOH 29 3 HOH HOH 320 A HOH 30 3 HOH HOH 321 A HOH 32 3 HOH HOH 322 A HOH 33 3 HOH HOH 323 A HOH 34 3 HOH HOH 324 A HOH 37 3 HOH HOH 325 A HOH 38 3 HOH HOH 326 A HOH 39 3 HOH HOH 327 A HOH 40 3 HOH HOH 328 A HOH 41 3 HOH HOH 329 A HOH 2 3 HOH HOH 301 B HOH 5 3 HOH HOH 302 B HOH 7 3 HOH HOH 303 B HOH 13 3 HOH HOH 304 B HOH 14 3 HOH HOH 305 B HOH 15 3 HOH HOH 306 B HOH 16 3 HOH HOH 307 B HOH 24 3 HOH HOH 308 B HOH 26 3 HOH HOH 309 B HOH 31 3 HOH HOH 310 B HOH 35 3 HOH HOH 311 B HOH 36 3 HOH HOH 312 B HOH 42 3 HOH HOH 313 B 4.000 4.000 31.920 31.920 Phaser MODE: MR_AUTO MET 1 n 1 MET 1 A ASN 2 n 2 ASN 2 A LYS 3 n 3 LYS 3 A ALA 4 n 4 ALA 4 A GLU 5 n 5 GLU 5 A LEU 6 n 6 LEU 6 A ILE 7 n 7 ILE 7 A ASP 8 n 8 ASP 8 A VAL 9 n 9 VAL 9 A LEU 10 n 10 LEU 10 A THR 11 n 11 THR 11 A GLN 12 n 12 GLN 12 A LYS 13 n 13 LYS 13 A LEU 14 n 14 LEU 14 A GLY 15 n 15 GLY 15 A SER 16 n 16 SER 16 A ASP 17 n 17 ASP 17 A ARG 18 n 18 ARG 18 A ARG 19 n 19 ARG 19 A GLN 20 n 20 GLN 20 A ALA 21 n 21 ALA 21 A THR 22 n 22 THR 22 A ALA 23 n 23 ALA 23 A ALA 24 n 24 ALA 24 A VAL 25 n 25 VAL 25 A GLU 26 n 26 GLU 26 A ASN 27 n 27 ASN 27 A VAL 28 n 28 VAL 28 A VAL 29 n 29 VAL 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A ILE 32 n 32 ILE 32 A VAL 33 n 33 VAL 33 A ARG 34 n 34 ARG 34 A ALA 35 n 35 ALA 35 A VAL 36 n 36 VAL 36 A HIS 37 n 37 HIS 37 A LYS 38 n 38 LYS 38 A GLY 39 n 39 GLY 39 A ASP 40 n 40 ASP 40 A SER 41 n 41 SER 41 A VAL 42 n 42 VAL 42 A THR 43 n 43 THR 43 A ILE 44 n 44 ILE 44 A THR 45 n 45 THR 45 A GLY 46 n 46 GLY 46 A PHE 47 n 47 PHE 47 A GLY 48 n 48 GLY 48 A VAL 49 n 49 VAL 49 A PHE 50 n 50 PHE 50 A GLU 51 n 51 GLU 51 A GLN 52 n 52 GLN 52 A ARG 53 n 53 ARG 53 A ARG 54 n 54 ARG 54 A ARG 55 n 55 ARG 55 A ALA 56 n 56 ALA 56 A ALA 57 n 57 ALA 57 A ARG 58 n 58 ARG 58 A VAL 59 n 59 VAL 59 A ALA 60 n 60 ALA 60 A ARG 61 n 61 ARG 61 A ASN 62 n 62 ASN 62 A PRO 63 n 63 PRO 63 A ARG 64 n 64 ARG 64 A THR 65 n 65 THR 65 A GLY 66 n 66 GLY 66 A GLU 67 n 67 GLU 67 A THR 68 n 68 THR 68 A VAL 69 n 69 VAL 69 A LYS 70 n 70 LYS 70 A VAL 71 n 71 VAL 71 A LYS 72 n 72 LYS 72 A PRO 73 n 73 PRO 73 A THR 74 n 74 THR 74 A SER 75 n 75 SER 75 A VAL 76 n 76 VAL 76 A PRO 77 n 77 PRO 77 A ALA 78 n 78 ALA 78 A PHE 79 n 79 PHE 79 A ARG 80 n 80 ARG 80 A PRO 81 n 81 PRO 81 A GLY 82 n 82 GLY 82 A ALA 83 n 83 ALA 83 A GLN 84 n 84 GLN 84 A PHE 85 n 85 PHE 85 A LYS 86 n 86 LYS 86 A ALA 87 n 87 ALA 87 A VAL 88 n 88 VAL 88 A VAL 89 n 89 VAL 89 A SER 90 n 90 SER 90 A GLY 91 n 91 GLY 91 A ALA 92 n 92 ALA 92 A GLN 93 n 93 GLN 93 A ARG 94 n 94 ARG 94 A LEU 95 n 95 LEU 95 A PRO 96 n 96 PRO 96 A ALA 97 n 97 ALA 97 A n 98 98 A n 99 99 A n 100 100 A n 101 101 A n 102 102 A n 103 103 A n 104 104 A n 105 105 A n 106 106 A MET 1 n 1 MET 1 B ASN 2 n 2 ASN 2 B LYS 3 n 3 LYS 3 B ALA 4 n 4 ALA 4 B GLU 5 n 5 GLU 5 B LEU 6 n 6 LEU 6 B ILE 7 n 7 ILE 7 B ASP 8 n 8 ASP 8 B VAL 9 n 9 VAL 9 B LEU 10 n 10 LEU 10 B THR 11 n 11 THR 11 B GLN 12 n 12 GLN 12 B LYS 13 n 13 LYS 13 B LEU 14 n 14 LEU 14 B GLY 15 n 15 GLY 15 B SER 16 n 16 SER 16 B ASP 17 n 17 ASP 17 B ARG 18 n 18 ARG 18 B ARG 19 n 19 ARG 19 B GLN 20 n 20 GLN 20 B ALA 21 n 21 ALA 21 B THR 22 n 22 THR 22 B ALA 23 n 23 ALA 23 B ALA 24 n 24 ALA 24 B VAL 25 n 25 VAL 25 B GLU 26 n 26 GLU 26 B ASN 27 n 27 ASN 27 B VAL 28 n 28 VAL 28 B VAL 29 n 29 VAL 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B ILE 32 n 32 ILE 32 B VAL 33 n 33 VAL 33 B ARG 34 n 34 ARG 34 B ALA 35 n 35 ALA 35 B VAL 36 n 36 VAL 36 B HIS 37 n 37 HIS 37 B LYS 38 n 38 LYS 38 B GLY 39 n 39 GLY 39 B ASP 40 n 40 ASP 40 B SER 41 n 41 SER 41 B VAL 42 n 42 VAL 42 B THR 43 n 43 THR 43 B ILE 44 n 44 ILE 44 B THR 45 n 45 THR 45 B GLY 46 n 46 GLY 46 B PHE 47 n 47 PHE 47 B GLY 48 n 48 GLY 48 B VAL 49 n 49 VAL 49 B PHE 50 n 50 PHE 50 B GLU 51 n 51 GLU 51 B GLN 52 n 52 GLN 52 B ARG 53 n 53 ARG 53 B ARG 54 n 54 ARG 54 B ARG 55 n 55 ARG 55 B ALA 56 n 56 ALA 56 B ALA 57 n 57 ALA 57 B ARG 58 n 58 ARG 58 B VAL 59 n 59 VAL 59 B ALA 60 n 60 ALA 60 B ARG 61 n 61 ARG 61 B ASN 62 n 62 ASN 62 B PRO 63 n 63 PRO 63 B ARG 64 n 64 ARG 64 B THR 65 n 65 THR 65 B GLY 66 n 66 GLY 66 B GLU 67 n 67 GLU 67 B THR 68 n 68 THR 68 B VAL 69 n 69 VAL 69 B LYS 70 n 70 LYS 70 B VAL 71 n 71 VAL 71 B LYS 72 n 72 LYS 72 B PRO 73 n 73 PRO 73 B THR 74 n 74 THR 74 B SER 75 n 75 SER 75 B VAL 76 n 76 VAL 76 B PRO 77 n 77 PRO 77 B ALA 78 n 78 ALA 78 B PHE 79 n 79 PHE 79 B ARG 80 n 80 ARG 80 B PRO 81 n 81 PRO 81 B GLY 82 n 82 GLY 82 B ALA 83 n 83 ALA 83 B GLN 84 n 84 GLN 84 B PHE 85 n 85 PHE 85 B LYS 86 n 86 LYS 86 B ALA 87 n 87 ALA 87 B VAL 88 n 88 VAL 88 B VAL 89 n 89 VAL 89 B SER 90 n 90 SER 90 B GLY 91 n 91 GLY 91 B ALA 92 n 92 ALA 92 B GLN 93 n 93 GLN 93 B ARG 94 n 94 ARG 94 B LEU 95 n 95 LEU 95 B PRO 96 n 96 PRO 96 B ALA 97 n 97 ALA 97 B GLU 98 n 98 GLU 98 B n 99 99 B n 100 100 B n 101 101 B HIS 102 n 102 HIS 102 B HIS 103 n 103 HIS 103 B HIS 104 n 104 HIS 104 B n 105 105 B n 106 106 B 2.2215 -1.9222 1.8877 2.2639 -2.6349 3.2745 -0.1616 0.1478 0.2105 -0.0152 0.0327 -0.1576 0.1143 -0.1359 0.1289 0.2149 -0.0426 0.1638 0.1649 0.0096 0.2361 refined -7.7387 -31.0439 -5.3211 X-RAY DIFFRACTION 1.5792 1.1631 2.4023 4.4186 4.7041 6.0777 0.0415 -0.1945 -0.2864 0.5563 0.2129 -0.0143 0.4653 -0.0119 -0.2544 0.2605 -0.0339 0.1273 0.1732 0.0079 0.1912 refined -1.0637 -25.7445 8.1226 X-RAY DIFFRACTION 5.5138 -0.4037 1.6404 2.9677 -0.5169 0.5501 0.1279 -0.0958 -0.0984 0.2136 -0.1094 -0.4129 -0.0102 -0.0509 -0.0185 0.1924 0.0054 0.1528 0.2166 0.0679 0.2747 refined 6.1285 -13.7737 4.3846 X-RAY DIFFRACTION 22.1432 -7.1903 5.4691 6.6963 -0.0379 2.0502 -0.6065 -0.2910 1.1725 0.4167 0.1093 -0.0370 -0.0491 -0.0957 0.4972 0.1683 0.0033 0.1288 0.1754 -0.0279 0.2612 refined -9.2122 4.6653 13.7469 X-RAY DIFFRACTION 0.6101 0.6336 -1.7549 1.2591 0.6581 15.4484 -0.0416 -0.0342 0.0111 -0.1653 0.0514 0.0227 -0.4196 0.2716 -0.0097 0.2099 0.0321 0.1384 0.1911 0.0113 0.1247 refined 4.2447 -11.7673 -3.0169 X-RAY DIFFRACTION 14.6097 -17.7185 -25.7763 21.5462 31.3137 45.5259 0.0904 1.1552 -1.1206 -0.2283 -1.7494 1.2792 -0.4272 -2.1323 1.6590 0.9867 -0.2501 -0.0656 0.3150 0.0458 0.3354 refined 5.9849 -18.4504 -18.6728 X-RAY DIFFRACTION 2.0499 0.9966 -0.7703 6.8212 -2.2872 0.8678 -0.0103 -0.1995 0.0240 -0.1194 -0.0513 -0.2703 0.0274 0.0497 0.0616 0.1855 0.0310 0.1142 0.1568 0.0271 0.1570 refined -20.2310 -6.1183 -5.6180 X-RAY DIFFRACTION 2.9326 3.3924 -1.2187 8.4206 -3.2088 2.5444 0.3112 -0.3113 0.0656 0.7389 -0.2781 -0.1851 -0.3860 0.0902 -0.0331 0.2441 0.0029 0.1258 0.1507 -0.0317 0.1442 refined -25.7971 -10.2552 7.3279 X-RAY DIFFRACTION 2.0701 -2.2977 1.6446 11.1903 -5.3304 3.1735 0.1613 0.0609 -0.1806 -0.2084 0.0031 0.3476 0.1590 0.0766 -0.1644 0.1656 0.0583 0.1040 0.1719 -0.0139 0.1410 refined -33.6408 -22.9006 4.2965 X-RAY DIFFRACTION 1.8082 -0.7433 -1.2493 11.1063 0.7293 0.8693 -1.0009 -0.3548 0.1645 0.1237 1.0888 -0.3649 0.7027 0.2489 -0.0879 0.6278 0.1411 0.0338 0.3282 -0.1381 0.2945 refined -18.0105 -41.7328 13.4924 X-RAY DIFFRACTION 0.0417 -0.1094 -0.0838 1.1775 1.0767 0.9931 -0.0161 -0.0643 -0.0459 -0.2240 -0.0646 0.0973 -0.2293 -0.1049 0.0807 0.2360 0.0344 0.1445 0.2251 -0.0028 0.1702 refined -31.5757 -25.6393 -2.2711 X-RAY DIFFRACTION 28.2178 4.6010 -0.5199 3.5348 5.6787 11.9398 -1.0160 -0.1133 -0.3925 -0.8019 -0.2574 0.5777 -1.3342 -0.3825 1.2734 0.4832 0.0818 0.0080 0.0168 -0.0243 0.2216 refined -30.9366 -19.4688 -20.6017 X-RAY DIFFRACTION A 1 A 18 X-RAY DIFFRACTION 1 A 19 A 40 X-RAY DIFFRACTION 2 A 41 A 54 X-RAY DIFFRACTION 3 A 55 A 73 X-RAY DIFFRACTION 4 A 74 A 90 X-RAY DIFFRACTION 5 A 91 A 97 X-RAY DIFFRACTION 6 B 1 B 17 X-RAY DIFFRACTION 7 B 18 B 40 X-RAY DIFFRACTION 8 B 41 B 54 X-RAY DIFFRACTION 9 B 55 B 72 X-RAY DIFFRACTION 10 B 73 B 91 X-RAY DIFFRACTION 11 B 92 B 104 X-RAY DIFFRACTION 12 1 0.593 2 0.407 author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric 4470 -51 11670 4490 -51 12310 B GLU 98 B OE1 GLU 98 1_555 B MN 201 D MN MN 1_555 B GLU 98 B OE2 GLU 98 1_555 60.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_555 -x,y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_455 -x-1,y,-z crystal symmetry operation -55.1150000000 0.0000000000 0.0000000000 A N VAL 42 A N VAL 42 A O PHE 50 A O PHE 50 A N ARG 53 A N ARG 53 A O VAL 76 A O VAL 76 A N ALA 60 A N ALA 60 A O VAL 69 A O VAL 69 B N ILE 44 B N ILE 44 B O GLY 48 B O GLY 48 B N ARG 53 B N ARG 53 B O VAL 76 B O VAL 76 B N ALA 60 B N ALA 60 B O VAL 69 B O VAL 69 1 B CG HIS 102 B CG HIS 102 1 Y 1 B ND1 HIS 102 B ND1 HIS 102 1 Y 1 B CD2 HIS 102 B CD2 HIS 102 1 Y 1 B CE1 HIS 102 B CE1 HIS 102 1 Y 1 B NE2 HIS 102 B NE2 HIS 102 1 Y 1 A GLU 98 A GLU 98 1 Y 1 A GLY 99 A GLY 99 1 Y 1 A PRO 100 A PRO 100 1 Y 1 A HIS 101 A HIS 101 1 Y 1 A HIS 102 A HIS 102 1 Y 1 A HIS 103 A HIS 103 1 Y 1 A HIS 104 A HIS 104 1 Y 1 A HIS 105 A HIS 105 1 Y 1 A HIS 106 A HIS 106 1 Y 1 B GLY 99 B GLY 99 1 Y 1 B PRO 100 B PRO 100 1 Y 1 B HIS 101 B HIS 101 1 Y 1 B HIS 105 B HIS 105 1 Y 1 B HIS 106 B HIS 106 1 Y 1 A PHE 47 -127.27 -77.74 1 B PHE 47 -106.43 -66.99 1 B HIS 103 -117.97 70.96 55.087 -24.93 0.00 -3.36 -9.90 -0.00 34.83 0.945 0.906 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.24786 0.18314 0.18596 2.478 31.92 336 6667 4.8 80.90 1.000 1.000 15.309 0.177 0.1989 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.191 0.068 0.80 0.80 1.20 PDB ENTRY 3C4I MAXIMUM LIKELIHOOD MASK 2.478 31.92 42 1550 2 0 1506 0.026 0.019 1525 0.003 0.020 1082 2.390 1.948 2058 3.844 3.000 2609 7.227 5.000 195 38.065 21.642 67 22.732 15.000 264 18.191 15.000 22 0.133 0.200 242 0.008 0.021 1697 0.007 0.020 321 0.313 0.228 2.542 18 214 20 38.16 2.478 50.000 4DKY 8601 8546 2.0 2.0 0.094 1 7.600 3.800 81.3 0.575 2.478 2.542 1 3.600 99.000 0.636 2.542 2.590 1 3.700 99.800 0.492 2.590 2.640 1 3.600 100.000 0.466 2.640 2.690 1 3.800 99.800 0.406 2.690 2.750 1 3.800 100.000 0.373 2.750 2.820 1 3.800 100.000 0.236 2.820 2.890 1 3.900 100.000 0.283 2.890 2.960 1 3.800 100.000 0.186 2.960 3.050 1 3.800 100.000 0.186 3.050 3.150 1 3.900 100.000 0.136 3.150 3.260 1 3.800 100.000 0.140 3.260 3.390 1 3.900 100.000 0.102 3.390 3.550 1 3.800 100.000 0.081 3.550 3.730 1 3.800 100.000 0.074 3.730 3.970 1 3.700 100.000 0.058 3.970 4.270 1 3.700 100.000 0.049 4.270 4.700 1 3.700 100.000 0.047 4.700 5.380 1 3.500 100.000 0.047 5.380 6.780 1 3.800 100.000 0.043 6.780 50.000 1 3.500 98.900 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO program data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Wed Jun 29 17:49:14 2011 (svn ) http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.3.0 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data collection CBASS Crystal structure Analysis of N terminal region containing the dimerization domain and DNA binding domain of HU protein(Histone like protein-DNA binding) from Mycobacterium tuberculosis [H37Ra] 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A ASN 2 A ASN 2 HELX_P A GLY 15 A GLY 15 1 1 14 A ASP 17 A ASP 17 HELX_P A LYS 38 A LYS 38 1 2 22 A GLY 82 A GLY 82 HELX_P A SER 90 A SER 90 1 3 9 B ASN 2 B ASN 2 HELX_P B GLY 15 B GLY 15 1 4 14 B ASP 17 B ASP 17 HELX_P B LYS 38 B LYS 38 1 5 22 B GLY 82 B GLY 82 HELX_P B SER 90 B SER 90 1 6 9 metalc 2.355 A MN 201 C MN MN 1_555 A HOH 322 E O HOH 1_555 metalc 2.140 B GLU 98 B OE1 GLU 98 1_555 B MN 201 D MN MN 1_555 metalc 2.319 B GLU 98 B OE2 GLU 98 1_555 B MN 201 D MN MN 1_555 DNA BINDING PROTEIN Nucleoid Associated protein, Nucleoid architecture, Histone-like, HU, HU-IHF fold, genome compaction, gene regulation, DNA BINDING PROTEIN A5U6Z7_MYCTA UNP 1 1 A5U6Z7 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPTSVPAFR PGAQFKAVVSGAQRLPAEGP 1 100 4DKY 1 100 A5U6Z7 A 1 1 100 1 100 4DKY 1 100 A5U6Z7 B 1 1 100 1 expression tag HIS 101 4DKY A A5U6Z7 UNP 101 1 expression tag HIS 102 4DKY A A5U6Z7 UNP 102 1 expression tag HIS 103 4DKY A A5U6Z7 UNP 103 1 expression tag HIS 104 4DKY A A5U6Z7 UNP 104 1 expression tag HIS 105 4DKY A A5U6Z7 UNP 105 1 expression tag HIS 106 4DKY A A5U6Z7 UNP 106 2 expression tag HIS 101 4DKY B A5U6Z7 UNP 101 2 expression tag HIS 102 4DKY B A5U6Z7 UNP 102 2 expression tag HIS 103 4DKY B A5U6Z7 UNP 103 2 expression tag HIS 104 4DKY B A5U6Z7 UNP 104 2 expression tag HIS 105 4DKY B A5U6Z7 UNP 105 2 expression tag HIS 106 4DKY B A5U6Z7 UNP 106 3 2 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 42 A VAL 42 A ILE 44 A ILE 44 A GLY 48 A GLY 48 A ARG 55 A ARG 55 A THR 74 A THR 74 A PRO 81 A PRO 81 A ARG 58 A ARG 58 A ARG 61 A ARG 61 A THR 68 A THR 68 A VAL 71 A VAL 71 B VAL 42 B VAL 42 B ILE 44 B ILE 44 B GLY 48 B GLY 48 B ARG 55 B ARG 55 B THR 74 B THR 74 B PRO 81 B PRO 81 B ARG 58 B ARG 58 B ARG 61 B ARG 61 B THR 68 B THR 68 B VAL 71 B VAL 71 BINDING SITE FOR RESIDUE MN A 201 A MN 201 Software 2 BINDING SITE FOR RESIDUE MN B 201 B MN 201 Software 3 A ARG 94 A ARG 94 2 1_555 A HOH 322 E HOH 2 1_555 B ARG 94 B ARG 94 3 1_555 B GLU 98 B GLU 98 3 1_555 B HIS 104 B HIS 104 3 1_555 3 P 1 2 1