0.011983
0.000000
0.003095
0.000000
0.032810
0.000000
0.000000
0.000000
0.037129
0.00000
0.00000
0.00000
Oshaben, K.M.
Salari, R.
Chong, L.T.
Horne, W.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
104.48
90.00
83.449
30.478
27.816
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
C
N
4
N
H
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
S
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
N
N
102
S
C
N
103
N
C
N
104
N
O
N
105
N
C
N
106
N
C
N
107
N
C
N
108
N
O
N
109
N
O
N
110
N
O
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
N
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
Y
135
N
C
Y
136
N
N
Y
137
N
C
Y
138
N
C
Y
139
N
N
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
N
C
N
159
N
C
N
160
N
C
N
161
N
C
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
S
C
N
178
N
C
N
179
N
O
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
N
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
N
N
202
S
C
N
203
N
C
N
204
N
O
N
205
N
C
N
206
N
C
N
207
N
S
N
208
N
C
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
N
N
222
S
C
N
223
N
C
N
224
N
O
N
225
N
C
N
226
N
O
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
Y
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
N
246
N
O
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
Y
133
N
sing
Y
134
N
doub
Y
135
N
doub
N
136
N
sing
Y
137
N
sing
N
138
N
sing
Y
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
Y
233
N
doub
Y
234
N
sing
Y
235
N
sing
N
236
N
sing
Y
237
N
doub
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
51
9581
9591
10.1021/bi301132k
23116373
The Native GCN4 Leucine-Zipper Domain Does Not Uniquely Specify a Dimeric Oligomerization State.
2012
10.2210/pdb4dmd/pdb
pdb_00004dmd
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-09-19
RIGAKU SATURN 944
Rigaku VariMax Optics
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU FR-E SUPERBRIGHT
4031.701
GCN4-p1 leucine zipper domain
2
syn
polymer
18.015
water
30
nat
water
no
yes
(ACE)RMKQLEDKVEELLSKNYHLENEVARLKKLVGER
XRMKQLEDKVEELLSKNYHLENEVARLKKLVGER
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
2.12
42.08
VAPOR DIFFUSION, HANGING DROP
5.6
0.1M Sodium Acetate, 0.1M Sodium Citrate Tribasic Dihydrate, 30% w/v PEG 4000, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-11-14
1
1
2012-12-12
1
2
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
GCN4-p1 dimer, different crystal form
RCSB
Y
RCSB
2012-02-07
REL
REL
HOH
water
32630
synthetic construct
sample
2ZTA
PDB entry 2ZTA
PDB
experimental model
HOH
1
2
HOH
HOH
101
A
HOH
9
2
HOH
HOH
102
A
HOH
12
2
HOH
HOH
103
A
HOH
13
2
HOH
HOH
104
A
HOH
14
2
HOH
HOH
105
A
HOH
16
2
HOH
HOH
106
A
HOH
23
2
HOH
HOH
107
A
HOH
24
2
HOH
HOH
108
A
HOH
25
2
HOH
HOH
109
A
HOH
27
2
HOH
HOH
110
A
HOH
29
2
HOH
HOH
111
A
HOH
31
2
HOH
HOH
112
A
HOH
33
2
HOH
HOH
113
A
HOH
34
2
HOH
HOH
114
A
HOH
3
2
HOH
HOH
115
A
HOH
8
2
HOH
HOH
116
A
HOH
9
2
HOH
HOH
117
A
HOH
2
2
HOH
HOH
101
B
HOH
3
2
HOH
HOH
102
B
HOH
4
2
HOH
HOH
103
B
HOH
5
2
HOH
HOH
104
B
HOH
8
2
HOH
HOH
105
B
HOH
10
2
HOH
HOH
106
B
HOH
11
2
HOH
HOH
107
B
HOH
15
2
HOH
HOH
108
B
HOH
17
2
HOH
HOH
109
B
HOH
18
2
HOH
HOH
110
B
HOH
20
2
HOH
HOH
111
B
HOH
21
2
HOH
HOH
112
B
HOH
22
2
HOH
HOH
113
B
ACE
0
n
1
ACE
0
A
ARG
1
n
2
ARG
1
A
MET
2
n
3
MET
2
A
LYS
3
n
4
LYS
3
A
GLN
4
n
5
GLN
4
A
LEU
5
n
6
LEU
5
A
GLU
6
n
7
GLU
6
A
ASP
7
n
8
ASP
7
A
LYS
8
n
9
LYS
8
A
VAL
9
n
10
VAL
9
A
GLU
10
n
11
GLU
10
A
GLU
11
n
12
GLU
11
A
LEU
12
n
13
LEU
12
A
LEU
13
n
14
LEU
13
A
SER
14
n
15
SER
14
A
LYS
15
n
16
LYS
15
A
ASN
16
n
17
ASN
16
A
TYR
17
n
18
TYR
17
A
HIS
18
n
19
HIS
18
A
LEU
19
n
20
LEU
19
A
GLU
20
n
21
GLU
20
A
ASN
21
n
22
ASN
21
A
GLU
22
n
23
GLU
22
A
VAL
23
n
24
VAL
23
A
ALA
24
n
25
ALA
24
A
ARG
25
n
26
ARG
25
A
LEU
26
n
27
LEU
26
A
LYS
27
n
28
LYS
27
A
LYS
28
n
29
LYS
28
A
LEU
29
n
30
LEU
29
A
VAL
30
n
31
VAL
30
A
GLY
31
n
32
GLY
31
A
n
33
32
A
n
34
33
A
ACE
0
n
1
ACE
0
B
ARG
1
n
2
ARG
1
B
MET
2
n
3
MET
2
B
LYS
3
n
4
LYS
3
B
GLN
4
n
5
GLN
4
B
LEU
5
n
6
LEU
5
B
GLU
6
n
7
GLU
6
B
ASP
7
n
8
ASP
7
B
LYS
8
n
9
LYS
8
B
VAL
9
n
10
VAL
9
B
GLU
10
n
11
GLU
10
B
GLU
11
n
12
GLU
11
B
LEU
12
n
13
LEU
12
B
LEU
13
n
14
LEU
13
B
SER
14
n
15
SER
14
B
LYS
15
n
16
LYS
15
B
ASN
16
n
17
ASN
16
B
TYR
17
n
18
TYR
17
B
HIS
18
n
19
HIS
18
B
LEU
19
n
20
LEU
19
B
GLU
20
n
21
GLU
20
B
ASN
21
n
22
ASN
21
B
GLU
22
n
23
GLU
22
B
VAL
23
n
24
VAL
23
B
ALA
24
n
25
ALA
24
B
ARG
25
n
26
ARG
25
B
LEU
26
n
27
LEU
26
B
LYS
27
n
28
LYS
27
B
LYS
28
n
29
LYS
28
B
LEU
29
n
30
LEU
29
B
VAL
30
n
31
VAL
30
B
GLY
31
n
32
GLY
31
B
GLU
32
n
33
GLU
32
B
ARG
33
n
34
ARG
33
B
author_and_software_defined_assembly
PISA
2
dimeric
2100
-19
4860
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CG
LYS
3
A
CG
LYS
4
1
Y
1
A
CD
LYS
3
A
CD
LYS
4
1
Y
1
A
CE
LYS
3
A
CE
LYS
4
1
Y
1
A
NZ
LYS
3
A
NZ
LYS
4
1
Y
1
A
CG
ASP
7
A
CG
ASP
8
1
Y
1
A
OD1
ASP
7
A
OD1
ASP
8
1
Y
1
A
OD2
ASP
7
A
OD2
ASP
8
1
Y
1
A
CE
LYS
8
A
CE
LYS
9
1
Y
1
A
NZ
LYS
8
A
NZ
LYS
9
1
Y
1
A
CD
LYS
28
A
CD
LYS
29
1
Y
1
A
CE
LYS
28
A
CE
LYS
29
1
Y
1
A
NZ
LYS
28
A
NZ
LYS
29
1
Y
1
B
CD
LYS
28
B
CD
LYS
29
1
Y
1
B
CE
LYS
28
B
CE
LYS
29
1
Y
1
B
NZ
LYS
28
B
NZ
LYS
29
1
Y
1
A
GLU
32
A
GLU
33
1
Y
1
A
ARG
33
A
ARG
34
1
Y
1
A
B
OE2
HH11
GLU
ARG
6
1
1.52
A
1
A
B
NH2
OE2
ARG
GLU
1
6
2.01
1
A
B
OE2
NH1
GLU
ARG
6
1
2.02
A
1
A
A
O
O
HOH
HOH
110
113
2.19
23.881
0.74
0.00
0.43
-0.48
0.00
-0.05
0.931
0.927
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.26485
0.23515
0.23660
2.00
40.40
218
4432
4.7
98.85
5.360
0.144
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.246
0.193
0.80
0.80
1.20
PDB entry 2ZTA
MAXIMUM LIKELIHOOD
MASK
2.00
40.40
30
559
0
0
529
0.016
0.019
540
0.006
0.020
389
1.817
2.001
719
1.055
3.000
949
5.540
5.000
66
40.721
24.286
28
15.772
15.000
119
27.579
15.000
6
0.100
0.200
81
0.007
0.020
585
0.001
0.020
101
0.458
0.307
2.052
17
264
20
86.73
2.00
40.40
4DMD
4757
0.058
1
15.5
3.76
99.8
data collection
CrystalClear
phasing
PHASER
refinement
REFMAC
5.6.0117
data reduction
d*TREK
data scaling
d*TREK
GCN4 leucine zipper domain in a dimeric oligomerization state
1
N
N
1
N
N
2
N
N
2
N
N
A
ARG
1
A
ARG
2
HELX_P
A
LEU
29
A
LEU
30
1
1
29
B
ARG
1
B
ARG
2
HELX_P
B
GLY
31
B
GLY
32
1
2
31
covale
1.333
both
A
ACE
0
A
C
ACE
1
1_555
A
ARG
1
A
N
ARG
2
1_555
covale
1.332
both
B
ACE
0
B
C
ACE
1
1_555
B
ARG
1
B
N
ARG
2
1_555
PROTEIN BINDING
PROTEIN BINDING
4DMD
PDB
1
4DMD
0
33
4DMD
0
33
4DMD
A
1
1
34
0
33
4DMD
0
33
4DMD
B
1
1
34
5
C 1 2 1