0.016346 0.000000 0.019263 0.000000 0.029087 0.000000 0.000000 0.000000 0.019785 0.00000 0.00000 0.00000 Oshaben, K.M. Salari, R. Chong, L.T. Horne, W.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 139.68 90.00 61.179 34.379 78.117 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O N 3 N C N 4 N H N 5 N H N 6 N H N 7 N H N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N N N 22 S C N 23 N C N 24 N O N 25 N C N 26 N C N 27 N C N 28 N N N 29 N C N 30 N N N 31 N N N 32 N O N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N N N 49 S C N 50 N C N 51 N O N 52 N C N 53 N C N 54 N O N 55 N N N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N O N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 S C N 83 N C N 84 N O N 85 N C N 86 N C N 87 N C N 88 N O N 89 N N N 90 N O N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N N N 102 S C N 103 N C N 104 N O N 105 N C N 106 N C N 107 N C N 108 N O N 109 N O N 110 N O N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N N N 121 N C N 122 N C N 123 N O N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N N N 131 S C N 132 N C N 133 N O N 134 N C Y 135 N C Y 136 N N Y 137 N C Y 138 N C Y 139 N N N 140 N O N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N O N 152 N H N 153 N H N 154 N N N 155 S C N 156 N C N 157 N O N 158 N C N 159 N C N 160 N C N 161 N C N 162 N O N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N N N 177 S C N 178 N C N 179 N O N 180 N C N 181 N C N 182 N C N 183 N C N 184 N N N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N N N 202 S C N 203 N C N 204 N O N 205 N C N 206 N C N 207 N S N 208 N C N 209 N O N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 N H N 223 N H N 224 N N N 225 S C N 226 N C N 227 N O N 228 N C N 229 N O N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N S N 239 N O N 240 N O N 241 N O N 242 N O N 243 N N N 244 S C N 245 N C N 246 N O N 247 N C Y 248 N C Y 249 N C Y 250 N C Y 251 N C Y 252 N C Y 253 N C N 254 N O N 255 N O N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 N C N 272 N C N 273 N C N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing Y 133 N sing Y 134 N doub Y 135 N doub N 136 N sing Y 137 N sing N 138 N sing Y 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing Y 239 N doub Y 240 N sing Y 241 N sing N 242 N sing Y 243 N doub N 244 N sing Y 245 N doub N 246 N sing Y 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing US Biochemistry BICHAW 0033 0006-2960 51 9581 9591 10.1021/bi301132k 23116373 The Native GCN4 Leucine-Zipper Domain Does Not Uniquely Specify a Dimeric Oligomerization State. 2012 10.2210/pdb4dme/pdb pdb_00004dme 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-09-02 RIGAKU SATURN 944 Rigaku VariMax Optics SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 4029.709 GCN4-p1 leucine zipper domain 3 syn polymer 96.063 SULFATE ION 3 syn non-polymer 18.015 water 48 nat water no yes (ACE)RMKQLEDKVEELLSKNYHLENEVARLKKLVGER(NH2) XRMKQLEDKVEELLSKNYHLENEVARLKKLVGERX A,B,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.20 44.05 VAPOR DIFFUSION, HANGING DROP 6.5 0.2 M Ammonium Sulfate, 0.1 M MES buffer, 30% (w/v) PEG MME 5000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2012-11-14 1 1 2012-12-12 1 2 2023-09-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-02-07 REL REL SO4 SULFATE ION HOH water 32630 synthetic construct sample 1IJ2 PDB entry 1IJ2 PDB experimental model SO4 1 2 SO4 SO4 101 A SO4 1 2 SO4 SO4 101 B SO4 1 2 SO4 SO4 101 C HOH 1 3 HOH HOH 201 A HOH 3 3 HOH HOH 202 A HOH 5 3 HOH HOH 203 A HOH 12 3 HOH HOH 204 A HOH 13 3 HOH HOH 205 A HOH 14 3 HOH HOH 206 A HOH 17 3 HOH HOH 207 A HOH 19 3 HOH HOH 208 A HOH 20 3 HOH HOH 209 A HOH 24 3 HOH HOH 210 A HOH 27 3 HOH HOH 211 A HOH 28 3 HOH HOH 212 A HOH 30 3 HOH HOH 213 A HOH 41 3 HOH HOH 214 A HOH 51 3 HOH HOH 215 A HOH 2 3 HOH HOH 201 B HOH 8 3 HOH HOH 202 B HOH 10 3 HOH HOH 203 B HOH 15 3 HOH HOH 204 B HOH 18 3 HOH HOH 205 B HOH 21 3 HOH HOH 206 B HOH 23 3 HOH HOH 207 B HOH 26 3 HOH HOH 208 B HOH 33 3 HOH HOH 209 B HOH 34 3 HOH HOH 210 B HOH 37 3 HOH HOH 211 B HOH 39 3 HOH HOH 212 B HOH 40 3 HOH HOH 213 B HOH 42 3 HOH HOH 214 B HOH 44 3 HOH HOH 215 B HOH 48 3 HOH HOH 216 B HOH 52 3 HOH HOH 217 B HOH 4 3 HOH HOH 201 C HOH 6 3 HOH HOH 202 C HOH 7 3 HOH HOH 203 C HOH 9 3 HOH HOH 204 C HOH 11 3 HOH HOH 205 C HOH 16 3 HOH HOH 206 C HOH 22 3 HOH HOH 207 C HOH 25 3 HOH HOH 208 C HOH 29 3 HOH HOH 209 C HOH 31 3 HOH HOH 210 C HOH 36 3 HOH HOH 211 C HOH 38 3 HOH HOH 212 C HOH 46 3 HOH HOH 213 C HOH 47 3 HOH HOH 214 C HOH 49 3 HOH HOH 215 C HOH 50 3 HOH HOH 216 C ACE 0 n 1 ACE 0 A ARG 1 n 2 ARG 1 A MET 2 n 3 MET 2 A LYS 3 n 4 LYS 3 A GLN 4 n 5 GLN 4 A LEU 5 n 6 LEU 5 A GLU 6 n 7 GLU 6 A ASP 7 n 8 ASP 7 A LYS 8 n 9 LYS 8 A VAL 9 n 10 VAL 9 A GLU 10 n 11 GLU 10 A GLU 11 n 12 GLU 11 A LEU 12 n 13 LEU 12 A LEU 13 n 14 LEU 13 A SER 14 n 15 SER 14 A LYS 15 n 16 LYS 15 A ASN 16 n 17 ASN 16 A TYR 17 n 18 TYR 17 A HIS 18 n 19 HIS 18 A LEU 19 n 20 LEU 19 A GLU 20 n 21 GLU 20 A ASN 21 n 22 ASN 21 A GLU 22 n 23 GLU 22 A VAL 23 n 24 VAL 23 A ALA 24 n 25 ALA 24 A ARG 25 n 26 ARG 25 A LEU 26 n 27 LEU 26 A LYS 27 n 28 LYS 27 A LYS 28 n 29 LYS 28 A LEU 29 n 30 LEU 29 A VAL 30 n 31 VAL 30 A GLY 31 n 32 GLY 31 A GLU 32 n 33 GLU 32 A ARG 33 n 34 ARG 33 A NH2 34 n 35 NH2 34 A ACE 0 n 1 ACE 0 B ARG 1 n 2 ARG 1 B MET 2 n 3 MET 2 B LYS 3 n 4 LYS 3 B GLN 4 n 5 GLN 4 B LEU 5 n 6 LEU 5 B GLU 6 n 7 GLU 6 B ASP 7 n 8 ASP 7 B LYS 8 n 9 LYS 8 B VAL 9 n 10 VAL 9 B GLU 10 n 11 GLU 10 B GLU 11 n 12 GLU 11 B LEU 12 n 13 LEU 12 B LEU 13 n 14 LEU 13 B SER 14 n 15 SER 14 B LYS 15 n 16 LYS 15 B ASN 16 n 17 ASN 16 B TYR 17 n 18 TYR 17 B HIS 18 n 19 HIS 18 B LEU 19 n 20 LEU 19 B GLU 20 n 21 GLU 20 B ASN 21 n 22 ASN 21 B GLU 22 n 23 GLU 22 B VAL 23 n 24 VAL 23 B ALA 24 n 25 ALA 24 B ARG 25 n 26 ARG 25 B LEU 26 n 27 LEU 26 B LYS 27 n 28 LYS 27 B LYS 28 n 29 LYS 28 B LEU 29 n 30 LEU 29 B VAL 30 n 31 VAL 30 B GLY 31 n 32 GLY 31 B GLU 32 n 33 GLU 32 B ARG 33 n 34 ARG 33 B NH2 34 n 35 NH2 34 B ACE 0 n 1 ACE 0 C ARG 1 n 2 ARG 1 C MET 2 n 3 MET 2 C LYS 3 n 4 LYS 3 C GLN 4 n 5 GLN 4 C LEU 5 n 6 LEU 5 C GLU 6 n 7 GLU 6 C ASP 7 n 8 ASP 7 C LYS 8 n 9 LYS 8 C VAL 9 n 10 VAL 9 C GLU 10 n 11 GLU 10 C GLU 11 n 12 GLU 11 C LEU 12 n 13 LEU 12 C LEU 13 n 14 LEU 13 C SER 14 n 15 SER 14 C LYS 15 n 16 LYS 15 C ASN 16 n 17 ASN 16 C TYR 17 n 18 TYR 17 C HIS 18 n 19 HIS 18 C LEU 19 n 20 LEU 19 C GLU 20 n 21 GLU 20 C ASN 21 n 22 ASN 21 C GLU 22 n 23 GLU 22 C VAL 23 n 24 VAL 23 C ALA 24 n 25 ALA 24 C ARG 25 n 26 ARG 25 C LEU 26 n 27 LEU 26 C LYS 27 n 28 LYS 27 C LYS 28 n 29 LYS 28 C LEU 29 n 30 LEU 29 C VAL 30 n 31 VAL 30 C GLY 31 n 32 GLY 31 C GLU 32 n 33 GLU 32 C ARG 33 n 34 ARG 33 C NH2 34 n 35 NH2 34 C author_and_software_defined_assembly PISA 3 trimeric 4810 -79 7200 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A NZ LYS 3 A NZ LYS 4 1 Y 1 A NZ LYS 8 A NZ LYS 9 1 Y 1 A NZ LYS 27 A NZ LYS 28 1 Y 1 A CG GLU 32 A CG GLU 33 1 Y 1 A CD GLU 32 A CD GLU 33 1 Y 1 A OE1 GLU 32 A OE1 GLU 33 1 Y 1 A OE2 GLU 32 A OE2 GLU 33 1 Y 1 B CE LYS 3 B CE LYS 4 1 Y 1 B NZ LYS 3 B NZ LYS 4 1 Y 1 B CG LYS 15 B CG LYS 16 1 Y 1 B CD LYS 15 B CD LYS 16 1 Y 1 B CE LYS 15 B CE LYS 16 1 Y 1 B NZ LYS 15 B NZ LYS 16 1 Y 1 B NZ LYS 27 B NZ LYS 28 1 Y 1 B CG GLU 32 B CG GLU 33 1 Y 1 B CD GLU 32 B CD GLU 33 1 Y 1 B OE1 GLU 32 B OE1 GLU 33 1 Y 1 B OE2 GLU 32 B OE2 GLU 33 1 Y 1 C NZ LYS 3 C NZ LYS 4 1 Y 1 C CE LYS 8 C CE LYS 9 1 Y 1 C NZ LYS 8 C NZ LYS 9 1 Y 1 B B OG O SER HOH 14 211 2.10 24.676 -1.70 0.00 -1.78 0.93 0.00 -1.93 0.928 0.891 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.28733 0.22582 0.22856 2.20 50.54 244 5198 4.5 99.34 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.381 0.268 0.80 0.80 1.20 PDB entry 1IJ2 MAXIMUM LIKELIHOOD MASK 2.20 50.54 48 891 15 0 828 0.010 0.019 857 0.000 0.020 612 1.387 2.015 1145 4.042 3.000 1491 4.211 5.000 103 38.965 24.667 45 14.310 15.000 188 18.803 15.000 9 0.072 0.200 128 0.005 0.020 926 0.004 0.020 155 0.313 0.265 2.257 18 376 20 100.00 2.20 50.54 4DME 5443 0.094 1 9.7 2.71 99.5 data collection CrystalClear phasing PHASER refinement REFMAC 5.6.0117 data reduction d*TREK data scaling d*TREK GCN4 leucine zipper domain in a trimeric oligomerization state 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 3 N N 3 N N 3 N N A ARG 1 A ARG 2 HELX_P A GLY 31 A GLY 32 1 1 31 B ARG 1 B ARG 2 HELX_P B GLY 31 B GLY 32 1 2 31 C ARG 1 C ARG 2 HELX_P C ARG 33 C ARG 34 1 3 33 covale 1.318 both A ACE 0 A C ACE 1 1_555 A ARG 1 A N ARG 2 1_555 covale 1.335 both A ARG 33 A C ARG 34 1_555 A NH2 34 A N NH2 35 1_555 covale 1.325 both B ACE 0 B C ACE 1 1_555 B ARG 1 B N ARG 2 1_555 covale 1.329 both B ARG 33 B C ARG 34 1_555 B NH2 34 B N NH2 35 1_555 covale 1.328 both C ACE 0 C C ACE 1 1_555 C ARG 1 C N ARG 2 1_555 covale 1.327 both C ARG 33 C C ARG 34 1_555 C NH2 34 C N NH2 35 1_555 PROTEIN BINDING PROTEIN BINDING 4DME PDB 1 4DME 0 34 4DME 0 34 4DME A 1 1 35 0 34 4DME 0 34 4DME B 1 1 35 0 34 4DME 0 34 4DME C 1 1 35 BINDING SITE FOR RESIDUE SO4 A 101 A SO4 101 Software 5 BINDING SITE FOR RESIDUE SO4 B 101 B SO4 101 Software 6 BINDING SITE FOR RESIDUE SO4 C 101 C SO4 101 Software 11 A ACE 0 A ACE 1 5 1_555 A ARG 1 A ARG 2 5 1_555 A MET 2 A MET 3 5 1_555 A HOH 206 G HOH 5 1_555 C LYS 28 C LYS 29 5 4_444 A ARG 1 A ARG 2 6 1_555 B ACE 0 B ACE 1 6 1_555 B MET 2 B MET 3 6 1_555 B LYS 3 B LYS 4 6 1_555 C NH2 34 C NH2 35 6 1_454 C HOH 213 I HOH 6 1_454 A MET 2 A MET 3 11 1_555 A ARG 25 A ARG 26 11 2_454 A LYS 28 A LYS 29 11 2_454 A HOH 215 G HOH 11 1_454 B ARG 33 B ARG 34 11 1_454 B NH2 34 B NH2 35 11 1_454 C ACE 0 C ACE 1 11 1_555 C ARG 1 C ARG 2 11 1_555 C MET 2 C MET 3 11 1_555 C ARG 33 C ARG 34 11 1_454 C HOH 206 I HOH 11 1_555 5 C 1 2 1