0.023937
0.000000
0.000000
0.000000
0.012189
0.000000
0.000000
0.000000
0.010892
0.00000
0.00000
0.00000
Whitney, J.C.
Colvin, K.M.
Marmont, L.S.
Robinson, H.
Parsek, M.R.
Howell, P.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
41.776
82.043
91.808
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C20 H24 N10 O14 P2
690.411
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
c-di-GMP; Cyclic diguanosine monophosphate
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
P
N
98
N
O
N
99
N
O
N
100
N
O
N
101
N
C
N
102
R
C
N
103
N
O
N
104
S
C
N
105
N
O
N
106
R
C
N
107
N
O
N
108
R
C
Y
109
N
N
Y
110
N
C
Y
111
N
N
Y
112
N
C
N
113
N
C
N
114
N
O
N
115
N
N
N
116
N
C
N
117
N
N
N
118
N
N
Y
119
N
C
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
R
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
S
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
O
N
166
N
N
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
O
N
186
N
O
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
N
C
N
199
N
C
N
200
N
O
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
Y
212
N
C
Y
213
N
N
Y
214
N
C
Y
215
N
C
Y
216
N
N
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
S
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
N
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
N
305
N
C
N
306
N
S
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
NA
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
N
C
N
349
N
C
N
350
N
C
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
N
366
N
O
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
S
N
376
N
O
N
377
N
O
N
378
N
O
N
379
N
O
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
R
C
N
385
N
O
N
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
Y
84
N
sing
Y
85
N
sing
Y
86
N
doub
Y
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
Y
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
Y
110
N
sing
Y
111
N
doub
Y
112
N
sing
Y
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
Y
216
N
sing
Y
217
N
doub
Y
218
N
doub
N
219
N
sing
Y
220
N
sing
N
221
N
sing
Y
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
Y
324
N
doub
Y
325
N
sing
Y
326
N
sing
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
287
23582
23593
10.1074/jbc.M112.375378
22605337
Structure of the Cytoplasmic Region of PelD, a Degenerate Diguanylate Cyclase Receptor That Regulates Exopolysaccharide Production in Pseudomonas aeruginosa.
2012
10.2210/pdb4dn0/pdb
pdb_00004dn0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-07-22
ADSC QUANTUM 315
Si 111 Channel
SINGLE WAVELENGTH
M
x-ray
1
1.075
1.0
X29A
NSLS
1.075
SYNCHROTRON
NSLS BEAMLINE X29A
36059.996
Putative uncharacterized protein pelD
Soluble fragment
1
man
polymer
690.411
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
2
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
22.990
SODIUM ION
2
syn
non-polymer
18.015
water
44
nat
water
no
no
MGSSHHHHHHSSGLVPRGSHMNDQSLRSSLLGLRQLLRELPGDEAPLDALAETVLALLAQYGSLRIAGLYRVRHDRTPEP
QPLATLGEMPVLDADDLLVRTCLERGELVSVRQELLERGEQRAHSALQVCVPLVDTDGRILALLAVEQMPFFVFNERTFS
LLAILAGHIADLLQSDRRALQLADIDAQRFSQYLKRSLLDARDHGLPACLYAFELTDARYGEEVQRLLEGSQRGLDVQLR
LRNDEGRRVLLVLLPLTSAEGSQGYLQRLRILFAERFGQARELESLGVRIRQYELDAGNDRQALGHFLFNECGLNDQQVA
V
MGSSHHHHHHSSGLVPRGSHMNDQSLRSSLLGLRQLLRELPGDEAPLDALAETVLALLAQYGSLRIAGLYRVRHDRTPEP
QPLATLGEMPVLDADDLLVRTCLERGELVSVRQELLERGEQRAHSALQVCVPLVDTDGRILALLAVEQMPFFVFNERTFS
LLAILAGHIADLLQSDRRALQLADIDAQRFSQYLKRSLLDARDHGLPACLYAFELTDARYGEEVQRLLEGSQRGLDVQLR
LRNDEGRRVLLVLLPLTSAEGSQGYLQRLRILFAERFGQARELESLGVRIRQYELDAGNDRQALGHFLFNECGLNDQQVA
V
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
UCBPP-PA14
sample
pelD, PA14_24510
208963
Pseudomonas aeruginosa
562
Escherichia coli
1
2.18
43.62
VAPOR DIFFUSION, HANGING DROP
6.1
22% PEG 8000, 0.1M sodium cacodylate, 0.2M ammonium sulfate, pH 6.1, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
Structure summary
1
0
2012-05-23
1
1
2012-05-30
1
2
2012-07-25
1
3
2024-02-28
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Apo form of the same protein
RCSB
Y
RCSB
2012-02-08
REL
REL
C2E
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
SO4
SULFATE ION
NA
SODIUM ION
HOH
water
C2E
1
2
C2E
C2E
501
A
C2E
2
2
C2E
C2E
502
A
SO4
1
3
SO4
SO4
503
A
NA
1
4
NA
NA
504
A
NA
2
4
NA
NA
505
A
HOH
1
5
HOH
HOH
601
A
HOH
2
5
HOH
HOH
602
A
HOH
3
5
HOH
HOH
603
A
HOH
4
5
HOH
HOH
604
A
HOH
5
5
HOH
HOH
605
A
HOH
6
5
HOH
HOH
606
A
HOH
7
5
HOH
HOH
607
A
HOH
8
5
HOH
HOH
608
A
HOH
9
5
HOH
HOH
609
A
HOH
10
5
HOH
HOH
610
A
HOH
11
5
HOH
HOH
611
A
HOH
12
5
HOH
HOH
612
A
HOH
13
5
HOH
HOH
613
A
HOH
14
5
HOH
HOH
614
A
HOH
15
5
HOH
HOH
615
A
HOH
16
5
HOH
HOH
616
A
HOH
17
5
HOH
HOH
617
A
HOH
18
5
HOH
HOH
618
A
HOH
19
5
HOH
HOH
619
A
HOH
20
5
HOH
HOH
620
A
HOH
21
5
HOH
HOH
621
A
HOH
22
5
HOH
HOH
622
A
HOH
23
5
HOH
HOH
623
A
HOH
24
5
HOH
HOH
624
A
HOH
25
5
HOH
HOH
625
A
HOH
26
5
HOH
HOH
626
A
HOH
27
5
HOH
HOH
627
A
HOH
28
5
HOH
HOH
628
A
HOH
29
5
HOH
HOH
629
A
HOH
30
5
HOH
HOH
630
A
HOH
31
5
HOH
HOH
631
A
HOH
32
5
HOH
HOH
632
A
HOH
33
5
HOH
HOH
633
A
HOH
34
5
HOH
HOH
634
A
HOH
35
5
HOH
HOH
635
A
HOH
36
5
HOH
HOH
636
A
HOH
37
5
HOH
HOH
637
A
HOH
38
5
HOH
HOH
638
A
HOH
39
5
HOH
HOH
639
A
HOH
40
5
HOH
HOH
640
A
HOH
41
5
HOH
HOH
641
A
HOH
42
5
HOH
HOH
642
A
HOH
43
5
HOH
HOH
643
A
HOH
44
5
HOH
HOH
644
A
n
1
135
A
n
2
136
A
n
3
137
A
n
4
138
A
n
5
139
A
n
6
140
A
n
7
141
A
n
8
142
A
n
9
143
A
n
10
144
A
n
11
145
A
n
12
146
A
n
13
147
A
n
14
148
A
n
15
149
A
n
16
150
A
n
17
151
A
n
18
152
A
n
19
153
A
n
20
154
A
n
21
155
A
n
22
156
A
n
23
157
A
GLN
158
n
24
GLN
158
A
SER
159
n
25
SER
159
A
LEU
160
n
26
LEU
160
A
ARG
161
n
27
ARG
161
A
SER
162
n
28
SER
162
A
SER
163
n
29
SER
163
A
LEU
164
n
30
LEU
164
A
LEU
165
n
31
LEU
165
A
GLY
166
n
32
GLY
166
A
LEU
167
n
33
LEU
167
A
ARG
168
n
34
ARG
168
A
GLN
169
n
35
GLN
169
A
LEU
170
n
36
LEU
170
A
LEU
171
n
37
LEU
171
A
ARG
172
n
38
ARG
172
A
GLU
173
n
39
GLU
173
A
LEU
174
n
40
LEU
174
A
PRO
175
n
41
PRO
175
A
GLY
176
n
42
GLY
176
A
ASP
177
n
43
ASP
177
A
GLU
178
n
44
GLU
178
A
ALA
179
n
45
ALA
179
A
PRO
180
n
46
PRO
180
A
LEU
181
n
47
LEU
181
A
ASP
182
n
48
ASP
182
A
ALA
183
n
49
ALA
183
A
LEU
184
n
50
LEU
184
A
ALA
185
n
51
ALA
185
A
GLU
186
n
52
GLU
186
A
THR
187
n
53
THR
187
A
VAL
188
n
54
VAL
188
A
LEU
189
n
55
LEU
189
A
ALA
190
n
56
ALA
190
A
LEU
191
n
57
LEU
191
A
LEU
192
n
58
LEU
192
A
ALA
193
n
59
ALA
193
A
GLN
194
n
60
GLN
194
A
TYR
195
n
61
TYR
195
A
GLY
196
n
62
GLY
196
A
SER
197
n
63
SER
197
A
LEU
198
n
64
LEU
198
A
ARG
199
n
65
ARG
199
A
ILE
200
n
66
ILE
200
A
ALA
201
n
67
ALA
201
A
GLY
202
n
68
GLY
202
A
LEU
203
n
69
LEU
203
A
TYR
204
n
70
TYR
204
A
ARG
205
n
71
ARG
205
A
VAL
206
n
72
VAL
206
A
ARG
207
n
73
ARG
207
A
HIS
208
n
74
HIS
208
A
ASP
209
n
75
ASP
209
A
ARG
210
n
76
ARG
210
A
THR
211
n
77
THR
211
A
PRO
212
n
78
PRO
212
A
GLU
213
n
79
GLU
213
A
PRO
214
n
80
PRO
214
A
GLN
215
n
81
GLN
215
A
PRO
216
n
82
PRO
216
A
LEU
217
n
83
LEU
217
A
ALA
218
n
84
ALA
218
A
THR
219
n
85
THR
219
A
LEU
220
n
86
LEU
220
A
GLY
221
n
87
GLY
221
A
GLU
222
n
88
GLU
222
A
MET
223
n
89
MET
223
A
PRO
224
n
90
PRO
224
A
VAL
225
n
91
VAL
225
A
LEU
226
n
92
LEU
226
A
ASP
227
n
93
ASP
227
A
ALA
228
n
94
ALA
228
A
ASP
229
n
95
ASP
229
A
ASP
230
n
96
ASP
230
A
LEU
231
n
97
LEU
231
A
LEU
232
n
98
LEU
232
A
VAL
233
n
99
VAL
233
A
ARG
234
n
100
ARG
234
A
THR
235
n
101
THR
235
A
CYS
236
n
102
CYS
236
A
LEU
237
n
103
LEU
237
A
GLU
238
n
104
GLU
238
A
ARG
239
n
105
ARG
239
A
GLY
240
n
106
GLY
240
A
GLU
241
n
107
GLU
241
A
LEU
242
n
108
LEU
242
A
VAL
243
n
109
VAL
243
A
SER
244
n
110
SER
244
A
VAL
245
n
111
VAL
245
A
ARG
246
n
112
ARG
246
A
GLN
247
n
113
GLN
247
A
GLU
248
n
114
GLU
248
A
LEU
249
n
115
LEU
249
A
n
116
250
A
n
117
251
A
n
118
252
A
n
119
253
A
n
120
254
A
n
121
255
A
n
122
256
A
n
123
257
A
n
124
258
A
n
125
259
A
ALA
260
n
126
ALA
260
A
LEU
261
n
127
LEU
261
A
GLN
262
n
128
GLN
262
A
VAL
263
n
129
VAL
263
A
CYS
264
n
130
CYS
264
A
VAL
265
n
131
VAL
265
A
PRO
266
n
132
PRO
266
A
LEU
267
n
133
LEU
267
A
VAL
268
n
134
VAL
268
A
ASP
269
n
135
ASP
269
A
THR
270
n
136
THR
270
A
ASP
271
n
137
ASP
271
A
GLY
272
n
138
GLY
272
A
ARG
273
n
139
ARG
273
A
ILE
274
n
140
ILE
274
A
LEU
275
n
141
LEU
275
A
ALA
276
n
142
ALA
276
A
LEU
277
n
143
LEU
277
A
LEU
278
n
144
LEU
278
A
ALA
279
n
145
ALA
279
A
VAL
280
n
146
VAL
280
A
GLU
281
n
147
GLU
281
A
GLN
282
n
148
GLN
282
A
MET
283
n
149
MET
283
A
PRO
284
n
150
PRO
284
A
PHE
285
n
151
PHE
285
A
PHE
286
n
152
PHE
286
A
VAL
287
n
153
VAL
287
A
PHE
288
n
154
PHE
288
A
ASN
289
n
155
ASN
289
A
GLU
290
n
156
GLU
290
A
ARG
291
n
157
ARG
291
A
THR
292
n
158
THR
292
A
PHE
293
n
159
PHE
293
A
SER
294
n
160
SER
294
A
LEU
295
n
161
LEU
295
A
LEU
296
n
162
LEU
296
A
ALA
297
n
163
ALA
297
A
ILE
298
n
164
ILE
298
A
LEU
299
n
165
LEU
299
A
ALA
300
n
166
ALA
300
A
GLY
301
n
167
GLY
301
A
HIS
302
n
168
HIS
302
A
ILE
303
n
169
ILE
303
A
ALA
304
n
170
ALA
304
A
ASP
305
n
171
ASP
305
A
LEU
306
n
172
LEU
306
A
LEU
307
n
173
LEU
307
A
GLN
308
n
174
GLN
308
A
n
175
309
A
n
176
310
A
n
177
311
A
n
178
312
A
n
179
313
A
n
180
314
A
n
181
315
A
n
182
316
A
n
183
317
A
ASP
318
n
184
ASP
318
A
ILE
319
n
185
ILE
319
A
ASP
320
n
186
ASP
320
A
ALA
321
n
187
ALA
321
A
GLN
322
n
188
GLN
322
A
ARG
323
n
189
ARG
323
A
PHE
324
n
190
PHE
324
A
SER
325
n
191
SER
325
A
GLN
326
n
192
GLN
326
A
TYR
327
n
193
TYR
327
A
LEU
328
n
194
LEU
328
A
LYS
329
n
195
LYS
329
A
ARG
330
n
196
ARG
330
A
SER
331
n
197
SER
331
A
LEU
332
n
198
LEU
332
A
LEU
333
n
199
LEU
333
A
ASP
334
n
200
ASP
334
A
ALA
335
n
201
ALA
335
A
ARG
336
n
202
ARG
336
A
ASP
337
n
203
ASP
337
A
HIS
338
n
204
HIS
338
A
GLY
339
n
205
GLY
339
A
LEU
340
n
206
LEU
340
A
PRO
341
n
207
PRO
341
A
ALA
342
n
208
ALA
342
A
CYS
343
n
209
CYS
343
A
LEU
344
n
210
LEU
344
A
TYR
345
n
211
TYR
345
A
ALA
346
n
212
ALA
346
A
PHE
347
n
213
PHE
347
A
GLU
348
n
214
GLU
348
A
LEU
349
n
215
LEU
349
A
THR
350
n
216
THR
350
A
ASP
351
n
217
ASP
351
A
ALA
352
n
218
ALA
352
A
ARG
353
n
219
ARG
353
A
TYR
354
n
220
TYR
354
A
GLY
355
n
221
GLY
355
A
GLU
356
n
222
GLU
356
A
GLU
357
n
223
GLU
357
A
VAL
358
n
224
VAL
358
A
GLN
359
n
225
GLN
359
A
ARG
360
n
226
ARG
360
A
LEU
361
n
227
LEU
361
A
LEU
362
n
228
LEU
362
A
GLU
363
n
229
GLU
363
A
GLY
364
n
230
GLY
364
A
SER
365
n
231
SER
365
A
GLN
366
n
232
GLN
366
A
ARG
367
n
233
ARG
367
A
GLY
368
n
234
GLY
368
A
LEU
369
n
235
LEU
369
A
ASP
370
n
236
ASP
370
A
VAL
371
n
237
VAL
371
A
GLN
372
n
238
GLN
372
A
LEU
373
n
239
LEU
373
A
ARG
374
n
240
ARG
374
A
LEU
375
n
241
LEU
375
A
ARG
376
n
242
ARG
376
A
ASN
377
n
243
ASN
377
A
ASP
378
n
244
ASP
378
A
GLU
379
n
245
GLU
379
A
GLY
380
n
246
GLY
380
A
ARG
381
n
247
ARG
381
A
ARG
382
n
248
ARG
382
A
VAL
383
n
249
VAL
383
A
LEU
384
n
250
LEU
384
A
LEU
385
n
251
LEU
385
A
VAL
386
n
252
VAL
386
A
LEU
387
n
253
LEU
387
A
LEU
388
n
254
LEU
388
A
PRO
389
n
255
PRO
389
A
LEU
390
n
256
LEU
390
A
THR
391
n
257
THR
391
A
SER
392
n
258
SER
392
A
ALA
393
n
259
ALA
393
A
GLU
394
n
260
GLU
394
A
GLY
395
n
261
GLY
395
A
SER
396
n
262
SER
396
A
GLN
397
n
263
GLN
397
A
GLY
398
n
264
GLY
398
A
TYR
399
n
265
TYR
399
A
LEU
400
n
266
LEU
400
A
GLN
401
n
267
GLN
401
A
ARG
402
n
268
ARG
402
A
LEU
403
n
269
LEU
403
A
ARG
404
n
270
ARG
404
A
ILE
405
n
271
ILE
405
A
LEU
406
n
272
LEU
406
A
PHE
407
n
273
PHE
407
A
ALA
408
n
274
ALA
408
A
GLU
409
n
275
GLU
409
A
ARG
410
n
276
ARG
410
A
PHE
411
n
277
PHE
411
A
GLY
412
n
278
GLY
412
A
GLN
413
n
279
GLN
413
A
ALA
414
n
280
ALA
414
A
ARG
415
n
281
ARG
415
A
GLU
416
n
282
GLU
416
A
LEU
417
n
283
LEU
417
A
GLU
418
n
284
GLU
418
A
SER
419
n
285
SER
419
A
LEU
420
n
286
LEU
420
A
GLY
421
n
287
GLY
421
A
VAL
422
n
288
VAL
422
A
ARG
423
n
289
ARG
423
A
ILE
424
n
290
ILE
424
A
ARG
425
n
291
ARG
425
A
GLN
426
n
292
GLN
426
A
TYR
427
n
293
TYR
427
A
GLU
428
n
294
GLU
428
A
LEU
429
n
295
LEU
429
A
ASP
430
n
296
ASP
430
A
ALA
431
n
297
ALA
431
A
GLY
432
n
298
GLY
432
A
ASN
433
n
299
ASN
433
A
ASP
434
n
300
ASP
434
A
ARG
435
n
301
ARG
435
A
GLN
436
n
302
GLN
436
A
ALA
437
n
303
ALA
437
A
LEU
438
n
304
LEU
438
A
GLY
439
n
305
GLY
439
A
HIS
440
n
306
HIS
440
A
PHE
441
n
307
PHE
441
A
LEU
442
n
308
LEU
442
A
PHE
443
n
309
PHE
443
A
ASN
444
n
310
ASN
444
A
GLU
445
n
311
GLU
445
A
CYS
446
n
312
CYS
446
A
GLY
447
n
313
GLY
447
A
LEU
448
n
314
LEU
448
A
ASN
449
n
315
ASN
449
A
ASP
450
n
316
ASP
450
A
GLN
451
n
317
GLN
451
A
GLN
452
n
318
GLN
452
A
VAL
453
n
319
VAL
453
A
ALA
454
n
320
ALA
454
A
VAL
455
n
321
VAL
455
A
3.6719
0.5766
0.0948
5.0099
-0.6731
5.6693
-0.0789
0.2453
-0.1651
-0.8176
-0.0553
0.4087
0.7494
-0.4015
0.0877
0.2829
-0.0812
-0.0362
0.1661
-0.0210
0.0621
refined
7.1627
-17.9655
13.3080
X-RAY DIFFRACTION
2.9091
-1.5352
1.1578
6.4003
-2.4961
2.6747
0.1008
-0.0176
-0.1332
0.2019
0.0837
0.3684
0.0773
-0.0393
-0.1773
0.1488
-0.0527
0.0155
0.2778
0.0284
0.2451
refined
7.3168
12.0079
6.8254
X-RAY DIFFRACTION
4.2883
0.4434
1.6332
3.6001
-1.9126
6.9856
0.0801
0.1858
-0.2186
0.1805
0.0328
-0.1568
0.1658
0.2604
-0.0524
0.1121
0.0162
0.0503
0.1547
-0.0215
0.2710
refined
14.9885
15.0558
10.9643
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
CHAIN A AND (RESSEQ 158:318)
X-RAY DIFFRACTION
2
CHAIN A AND (RESSEQ 319:411)
X-RAY DIFFRACTION
3
CHAIN A AND (RESSEQ 412:455)
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
218
A
O
ALA
84
A
N
LEU
203
A
N
LEU
69
A
N
GLY
202
A
N
GLY
68
A
O
ALA
279
A
O
ALA
145
A
O
ALA
276
A
O
ALA
142
A
N
LEU
267
A
N
LEU
133
A
O
CYS
264
A
O
CYS
130
A
N
VAL
243
A
N
VAL
109
A
N
LEU
375
A
N
LEU
241
A
O
VAL
383
A
O
VAL
249
A
O
LEU
388
A
O
LEU
254
A
N
CYS
343
A
N
CYS
209
A
N
ALA
346
A
N
ALA
212
A
O
ARG
425
A
O
ARG
291
1
A
CG
GLN
158
A
CG
GLN
24
1
Y
1
A
CD
GLN
158
A
CD
GLN
24
1
Y
1
A
OE1
GLN
158
A
OE1
GLN
24
1
Y
1
A
NE2
GLN
158
A
NE2
GLN
24
1
Y
1
A
NE
ARG
168
A
NE
ARG
34
1
Y
1
A
CZ
ARG
168
A
CZ
ARG
34
1
Y
1
A
NH1
ARG
168
A
NH1
ARG
34
1
Y
1
A
NH2
ARG
168
A
NH2
ARG
34
1
Y
1
A
CD
GLN
169
A
CD
GLN
35
1
Y
1
A
OE1
GLN
169
A
OE1
GLN
35
1
Y
1
A
NE2
GLN
169
A
NE2
GLN
35
1
Y
1
A
NE
ARG
172
A
NE
ARG
38
1
Y
1
A
CZ
ARG
172
A
CZ
ARG
38
1
Y
1
A
NH1
ARG
172
A
NH1
ARG
38
1
Y
1
A
NH2
ARG
172
A
NH2
ARG
38
1
Y
1
A
CG
ASP
177
A
CG
ASP
43
1
Y
1
A
OD1
ASP
177
A
OD1
ASP
43
1
Y
1
A
OD2
ASP
177
A
OD2
ASP
43
1
Y
1
A
CD
GLU
178
A
CD
GLU
44
1
Y
1
A
OE1
GLU
178
A
OE1
GLU
44
1
Y
1
A
OE2
GLU
178
A
OE2
GLU
44
1
Y
1
A
CG
GLN
194
A
CG
GLN
60
1
Y
1
A
CD
GLN
194
A
CD
GLN
60
1
Y
1
A
OE1
GLN
194
A
OE1
GLN
60
1
Y
1
A
NE2
GLN
194
A
NE2
GLN
60
1
Y
1
A
CG
ARG
199
A
CG
ARG
65
1
Y
1
A
CD
ARG
199
A
CD
ARG
65
1
Y
1
A
NE
ARG
199
A
NE
ARG
65
1
Y
1
A
CZ
ARG
199
A
CZ
ARG
65
1
Y
1
A
NH1
ARG
199
A
NH1
ARG
65
1
Y
1
A
NH2
ARG
199
A
NH2
ARG
65
1
Y
1
A
CG
HIS
208
A
CG
HIS
74
1
Y
1
A
ND1
HIS
208
A
ND1
HIS
74
1
Y
1
A
CD2
HIS
208
A
CD2
HIS
74
1
Y
1
A
CE1
HIS
208
A
CE1
HIS
74
1
Y
1
A
NE2
HIS
208
A
NE2
HIS
74
1
Y
1
A
CG
GLN
215
A
CG
GLN
81
1
Y
1
A
CD
GLN
215
A
CD
GLN
81
1
Y
1
A
OE1
GLN
215
A
OE1
GLN
81
1
Y
1
A
NE2
GLN
215
A
NE2
GLN
81
1
Y
1
A
CG
GLU
222
A
CG
GLU
88
1
Y
1
A
CD
GLU
222
A
CD
GLU
88
1
Y
1
A
OE1
GLU
222
A
OE1
GLU
88
1
Y
1
A
OE2
GLU
222
A
OE2
GLU
88
1
Y
1
A
CG
ARG
246
A
CG
ARG
112
1
Y
1
A
CD
ARG
246
A
CD
ARG
112
1
Y
1
A
NE
ARG
246
A
NE
ARG
112
1
Y
1
A
CZ
ARG
246
A
CZ
ARG
112
1
Y
1
A
NH1
ARG
246
A
NH1
ARG
112
1
Y
1
A
NH2
ARG
246
A
NH2
ARG
112
1
Y
1
A
CD
GLN
247
A
CD
GLN
113
1
Y
1
A
OE1
GLN
247
A
OE1
GLN
113
1
Y
1
A
NE2
GLN
247
A
NE2
GLN
113
1
Y
1
A
CG
GLU
248
A
CG
GLU
114
1
Y
1
A
CD
GLU
248
A
CD
GLU
114
1
Y
1
A
OE1
GLU
248
A
OE1
GLU
114
1
Y
1
A
OE2
GLU
248
A
OE2
GLU
114
1
Y
1
A
CG
LEU
249
A
CG
LEU
115
1
Y
1
A
CD1
LEU
249
A
CD1
LEU
115
1
Y
1
A
CD2
LEU
249
A
CD2
LEU
115
1
Y
1
A
CD
ARG
273
A
CD
ARG
139
1
Y
1
A
NE
ARG
273
A
NE
ARG
139
1
Y
1
A
CZ
ARG
273
A
CZ
ARG
139
1
Y
1
A
NH1
ARG
273
A
NH1
ARG
139
1
Y
1
A
NH2
ARG
273
A
NH2
ARG
139
1
Y
1
A
CG
PHE
285
A
CG
PHE
151
1
Y
1
A
CD1
PHE
285
A
CD1
PHE
151
1
Y
1
A
CD2
PHE
285
A
CD2
PHE
151
1
Y
1
A
CE1
PHE
285
A
CE1
PHE
151
1
Y
1
A
CE2
PHE
285
A
CE2
PHE
151
1
Y
1
A
CZ
PHE
285
A
CZ
PHE
151
1
Y
1
A
CG
ARG
291
A
CG
ARG
157
1
Y
1
A
CD
ARG
291
A
CD
ARG
157
1
Y
1
A
NE
ARG
291
A
NE
ARG
157
1
Y
1
A
CZ
ARG
291
A
CZ
ARG
157
1
Y
1
A
NH1
ARG
291
A
NH1
ARG
157
1
Y
1
A
NH2
ARG
291
A
NH2
ARG
157
1
Y
1
A
CG1
ILE
319
A
CG1
ILE
185
1
Y
1
A
CG2
ILE
319
A
CG2
ILE
185
1
Y
1
A
CD1
ILE
319
A
CD1
ILE
185
1
Y
1
A
CD
GLN
322
A
CD
GLN
188
1
Y
1
A
OE1
GLN
322
A
OE1
GLN
188
1
Y
1
A
NE2
GLN
322
A
NE2
GLN
188
1
Y
1
A
CG
GLU
394
A
CG
GLU
260
1
Y
1
A
CD
GLU
394
A
CD
GLU
260
1
Y
1
A
OE1
GLU
394
A
OE1
GLU
260
1
Y
1
A
OE2
GLU
394
A
OE2
GLU
260
1
Y
1
A
CG
GLN
413
A
CG
GLN
279
1
Y
1
A
CD
GLN
413
A
CD
GLN
279
1
Y
1
A
OE1
GLN
413
A
OE1
GLN
279
1
Y
1
A
NE2
GLN
413
A
NE2
GLN
279
1
Y
1
A
CG
ARG
423
A
CG
ARG
289
1
Y
1
A
CD
ARG
423
A
CD
ARG
289
1
Y
1
A
NE
ARG
423
A
NE
ARG
289
1
Y
1
A
CZ
ARG
423
A
CZ
ARG
289
1
Y
1
A
NH1
ARG
423
A
NH1
ARG
289
1
Y
1
A
NH2
ARG
423
A
NH2
ARG
289
1
Y
1
A
NE
ARG
435
A
NE
ARG
301
1
Y
1
A
CZ
ARG
435
A
CZ
ARG
301
1
Y
1
A
NH1
ARG
435
A
NH1
ARG
301
1
Y
1
A
NH2
ARG
435
A
NH2
ARG
301
1
Y
1
A
MET
135
A
MET
1
1
Y
1
A
GLY
136
A
GLY
2
1
Y
1
A
SER
137
A
SER
3
1
Y
1
A
SER
138
A
SER
4
1
Y
1
A
HIS
139
A
HIS
5
1
Y
1
A
HIS
140
A
HIS
6
1
Y
1
A
HIS
141
A
HIS
7
1
Y
1
A
HIS
142
A
HIS
8
1
Y
1
A
HIS
143
A
HIS
9
1
Y
1
A
HIS
144
A
HIS
10
1
Y
1
A
SER
145
A
SER
11
1
Y
1
A
SER
146
A
SER
12
1
Y
1
A
GLY
147
A
GLY
13
1
Y
1
A
LEU
148
A
LEU
14
1
Y
1
A
VAL
149
A
VAL
15
1
Y
1
A
PRO
150
A
PRO
16
1
Y
1
A
ARG
151
A
ARG
17
1
Y
1
A
GLY
152
A
GLY
18
1
Y
1
A
SER
153
A
SER
19
1
Y
1
A
HIS
154
A
HIS
20
1
Y
1
A
MET
155
A
MET
21
1
Y
1
A
ASN
156
A
ASN
22
1
Y
1
A
ASP
157
A
ASP
23
1
Y
1
A
LEU
250
A
LEU
116
1
Y
1
A
GLU
251
A
GLU
117
1
Y
1
A
ARG
252
A
ARG
118
1
Y
1
A
GLY
253
A
GLY
119
1
Y
1
A
GLU
254
A
GLU
120
1
Y
1
A
GLN
255
A
GLN
121
1
Y
1
A
ARG
256
A
ARG
122
1
Y
1
A
ALA
257
A
ALA
123
1
Y
1
A
HIS
258
A
HIS
124
1
Y
1
A
SER
259
A
SER
125
1
Y
1
A
SER
309
A
SER
175
1
Y
1
A
ASP
310
A
ASP
176
1
Y
1
A
ARG
311
A
ARG
177
1
Y
1
A
ARG
312
A
ARG
178
1
Y
1
A
ALA
313
A
ALA
179
1
Y
1
A
LEU
314
A
LEU
180
1
Y
1
A
GLN
315
A
GLN
181
1
Y
1
A
LEU
316
A
LEU
182
1
Y
1
A
ALA
317
A
ALA
183
1
Y
1
A
A
NH2
O2
ARG
SO4
374
503
2.15
1
A
ASP
177
-67.48
34.39
1
A
GLU
178
178.78
131.02
1
A
SER
197
37.96
48.58
1
A
LEU
369
89.31
-39.81
1
A
PHE
443
-94.35
-61.22
-0.2126
-0.0000
0.0000
-4.5408
-0.0000
4.7534
0.2519
0.2008
0.2059
2.300
45.904
1456
14617
14553
10.00
99.56
0.79
Random
1
1.35
MOLECULAR REPLACEMENT
24.62
1.06
1.30
ML
FLAT BULK SOLVENT MODEL
49.490
0.338
2.300
45.904
44
2246
99
0
2103
0.006
2237
0.993
3058
14.350
807
0.061
363
0.003
383
0.3190
0.2436
2.3821
136
1216
96.00
0.3225
0.2264
2.4775
144
1302
100.00
0.2739
0.2163
2.5902
142
1285
100.00
0.3266
0.2312
2.7268
145
1301
100.00
0.2946
0.2225
2.8976
143
1292
100.00
0.2735
0.2181
3.1212
145
1295
100.00
0.2533
0.2022
3.4353
146
1322
100.00
0.2309
0.1897
3.9321
147
1320
100.00
0.2036
0.1647
4.9531
149
1341
100.00
0.2529
0.2101
45.9131
159
1423
100.00
2.30
50.00
4DN0
14553
0.0
0.0
1
100.0
2.3
2.38
1
100.0
data collection
HKL-2000
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.7.1_743)
data reduction
HKL-2000
data scaling
HKL-2000
PelD 156-455 from Pseudomonas aeruginosa PA14 in complex with c-di-GMP
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
A
GLN
158
A
GLN
24
HELX_P
A
GLU
173
A
GLU
39
1
1
16
A
ALA
179
A
ALA
45
HELX_P
A
GLY
196
A
GLY
62
1
2
18
A
ASP
230
A
ASP
96
HELX_P
A
GLY
240
A
GLY
106
1
3
11
A
PRO
284
A
PRO
150
HELX_P
A
PHE
288
A
PHE
154
5
4
5
A
ASN
289
A
ASN
155
HELX_P
A
GLN
308
A
GLN
174
1
5
20
A
ILE
319
A
ILE
185
HELX_P
A
GLY
339
A
GLY
205
1
6
21
A
ASP
351
A
ASP
217
HELX_P
A
SER
365
A
SER
231
1
7
15
A
SER
392
A
SER
258
HELX_P
A
GLY
412
A
GLY
278
1
8
21
A
GLU
416
A
GLU
282
HELX_P
A
LEU
420
A
LEU
286
5
9
5
A
ASP
434
A
ASP
300
HELX_P
A
PHE
443
A
PHE
309
1
10
10
metalc
2.828
A
GLU
348
A
OE1
GLU
214
1_555
A
NA
504
E
NA
NA
1_555
Nucleotide-binding Protein
GAF domain, GGDEF domain, c-di-GMP receptor, Bacterial inner membrane, Nucleotide-binding Protein
Q02PM6_PSEAB
UNP
1
156
Q02PM6
NDQSLRSSLLGLRQLLRELPGDEAPLDALAETVLALLAQYGSLRIAGLYRVRHDRTPEPQPLATLGEMPVLDADDLLVRT
CLERGELVSVRQELLERGEQRAHSALQVCVPLVDTDGRILALLAVEQMPFFVFNERTFSLLAILAGHIADLLQSDRRALQ
LADIDAQRFSQYLKRSLLDARDHGLPACLYAFELTDARYGEEVQRLLEGSQRGLDVQLRLRNDEGRRVLLVLLPLTSAEG
SQGYLQRLRILFAERFGQARELESLGVRIRQYELDAGNDRQALGHFLFNECGLNDQQVAV
156
455
4DN0
156
455
Q02PM6
A
1
22
321
1
expression tag
MET
135
4DN0
A
Q02PM6
UNP
1
1
expression tag
GLY
136
4DN0
A
Q02PM6
UNP
2
1
expression tag
SER
137
4DN0
A
Q02PM6
UNP
3
1
expression tag
SER
138
4DN0
A
Q02PM6
UNP
4
1
expression tag
HIS
139
4DN0
A
Q02PM6
UNP
5
1
expression tag
HIS
140
4DN0
A
Q02PM6
UNP
6
1
expression tag
HIS
141
4DN0
A
Q02PM6
UNP
7
1
expression tag
HIS
142
4DN0
A
Q02PM6
UNP
8
1
expression tag
HIS
143
4DN0
A
Q02PM6
UNP
9
1
expression tag
HIS
144
4DN0
A
Q02PM6
UNP
10
1
expression tag
SER
145
4DN0
A
Q02PM6
UNP
11
1
expression tag
SER
146
4DN0
A
Q02PM6
UNP
12
1
expression tag
GLY
147
4DN0
A
Q02PM6
UNP
13
1
expression tag
LEU
148
4DN0
A
Q02PM6
UNP
14
1
expression tag
VAL
149
4DN0
A
Q02PM6
UNP
15
1
expression tag
PRO
150
4DN0
A
Q02PM6
UNP
16
1
expression tag
ARG
151
4DN0
A
Q02PM6
UNP
17
1
expression tag
GLY
152
4DN0
A
Q02PM6
UNP
18
1
expression tag
SER
153
4DN0
A
Q02PM6
UNP
19
1
expression tag
HIS
154
4DN0
A
Q02PM6
UNP
20
1
expression tag
MET
155
4DN0
A
Q02PM6
UNP
21
5
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
218
A
ALA
84
A
LEU
220
A
LEU
86
A
ILE
200
A
ILE
66
A
ARG
205
A
ARG
71
A
ILE
274
A
ILE
140
A
GLN
282
A
GLN
148
A
VAL
263
A
VAL
129
A
VAL
268
A
VAL
134
A
VAL
243
A
VAL
109
A
SER
244
A
SER
110
A
VAL
371
A
VAL
237
A
ARG
376
A
ARG
242
A
ARG
382
A
ARG
248
A
LEU
388
A
LEU
254
A
ALA
342
A
ALA
208
A
LEU
349
A
LEU
215
A
VAL
422
A
VAL
288
A
LEU
429
A
LEU
295
BINDING SITE FOR RESIDUE C2E A 501
A
C2E
501
Software
12
BINDING SITE FOR RESIDUE C2E A 502
A
C2E
502
Software
7
BINDING SITE FOR RESIDUE SO4 A 503
A
SO4
503
Software
3
BINDING SITE FOR RESIDUE NA A 504
A
NA
504
Software
2
BINDING SITE FOR RESIDUE NA A 505
A
NA
505
Software
1
A
ARG
161
A
ARG
27
12
1_555
A
ARG
367
A
ARG
233
12
1_555
A
ASP
370
A
ASP
236
12
1_555
A
LEU
388
A
LEU
254
12
1_555
A
THR
391
A
THR
257
12
1_555
A
GLY
395
A
GLY
261
12
1_555
A
GLY
398
A
GLY
264
12
1_555
A
TYR
399
A
TYR
265
12
1_555
A
ARG
402
A
ARG
268
12
1_555
A
C2E
502
C
C2E
12
1_555
A
HOH
611
G
HOH
12
1_555
A
HOH
643
G
HOH
12
1_555
A
ARG
161
A
ARG
27
7
1_555
A
LEU
165
A
LEU
31
7
1_555
A
GLN
366
A
GLN
232
7
1_555
A
ARG
367
A
ARG
233
7
1_555
A
GLY
368
A
GLY
234
7
1_555
A
ARG
402
A
ARG
268
7
1_555
A
C2E
501
B
C2E
7
1_555
A
ARG
207
A
ARG
73
3
3_555
A
HIS
208
A
HIS
74
3
3_555
A
ARG
374
A
ARG
240
3
1_555
A
GLU
348
A
GLU
214
2
1_555
A
ARG
425
A
ARG
291
2
1_555
A
ASP
450
A
ASP
316
1
1_555
19
P 21 21 21