0.030451
0.000000
0.000000
0.000000
0.021277
0.000000
0.000000
0.000000
0.012702
0.000000
0.000000
0.000000
Xiong, B.
Cao, D.Y.
Chen, W.Y.
Chen, T.T.
Xu, Y.C.
Shen, J.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
32.840
47.000
78.730
C9 H10 N2 O
162.188
3-methyl-3,4-dihydroquinazolin-2(1H)-one
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
N
7
N
C
N
8
N
N
N
9
N
C
Y
10
N
C
Y
11
N
C
N
12
N
N
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
N
N
24
S
C
N
25
N
C
N
26
N
O
N
27
N
C
N
28
N
O
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
N
N
37
S
C
N
38
N
C
N
39
N
O
N
40
N
C
N
41
N
C
N
42
N
C
N
43
N
N
N
44
N
C
N
45
N
N
N
46
N
N
N
47
N
O
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
N
N
64
S
C
N
65
N
C
N
66
N
O
N
67
N
C
N
68
N
C
N
69
N
O
N
70
N
N
N
71
N
O
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
N
N
81
S
C
N
82
N
C
N
83
N
O
N
84
N
C
N
85
N
C
N
86
N
O
N
87
N
O
N
88
N
O
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
R
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
S
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
N
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
O
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
N
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
N
N
160
S
C
N
161
N
C
N
162
N
O
N
163
N
C
Y
164
N
C
Y
165
N
N
Y
166
N
C
Y
167
N
C
Y
168
N
N
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
S
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
N
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
S
N
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
R
C
N
331
N
O
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
N
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
C
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
Y
6
N
doub
Y
7
N
sing
N
8
N
sing
Y
9
N
doub
N
10
N
sing
Y
11
N
sing
N
12
N
sing
Y
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
Y
23
N
doub
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
Y
163
N
sing
Y
164
N
doub
Y
165
N
doub
N
166
N
sing
Y
167
N
sing
N
168
N
sing
Y
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
Y
271
N
doub
Y
272
N
sing
Y
273
N
sing
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
doub
N
278
N
sing
Y
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
Y
340
N
doub
Y
341
N
sing
Y
342
N
sing
N
343
N
sing
Y
344
N
doub
Y
345
N
sing
Y
346
N
sing
N
347
N
sing
Y
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
To be Published
0353
Brd4 Bromodomain 1 complex with a fragment 3,4-Dihydro-3-methyl-2(1H)-quinazolinon
10.2210/pdb4don/pdb
pdb_00004don
100
1
CCD
2011-12-20
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
BL17U
SSRF
0.979
SYNCHROTRON
SSRF BEAMLINE BL17U
17225.748
Bromodomain-containing protein 4
Bromo 1 domain, UNP residues 44-166
1
man
polymer
162.188
3-methyl-3,4-dihydroquinazolin-2(1H)-one
1
syn
non-polymer
18.015
water
129
nat
water
Protein HUNK1
no
no
MHHHHHHSSGVDLGTENLYFQMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKII
KTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPT
MHHHHHHSSGVDLGTENLYFQMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKII
KTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPT
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
BRD4, HUNK1
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)codon plus
plasmid
pET28a
1
1.76
30.26
VAPOR DIFFUSION, HANGING DROP
3.6M Naformate, 10% glycerol, vapor diffusion, hanging drop, temperature 293K
293
reflns_shell
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Data collection
Database references
Data collection
Database references
Derived calculations
1
0
2013-02-13
1
1
2019-12-25
1
2
2024-03-20
_reflns_shell.Rmerge_I_obs
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2012-02-09
REL
REL
3PF
3-methyl-3,4-dihydroquinazolin-2(1H)-one
HOH
water
DRG
1
2
3PF
3PF
201
A
HOH
1
3
HOH
HOH
301
A
HOH
2
3
HOH
HOH
302
A
HOH
3
3
HOH
HOH
303
A
HOH
4
3
HOH
HOH
304
A
HOH
5
3
HOH
HOH
305
A
HOH
6
3
HOH
HOH
306
A
HOH
7
3
HOH
HOH
307
A
HOH
8
3
HOH
HOH
308
A
HOH
9
3
HOH
HOH
309
A
HOH
10
3
HOH
HOH
310
A
HOH
11
3
HOH
HOH
311
A
HOH
12
3
HOH
HOH
312
A
HOH
13
3
HOH
HOH
313
A
HOH
14
3
HOH
HOH
314
A
HOH
15
3
HOH
HOH
315
A
HOH
16
3
HOH
HOH
316
A
HOH
17
3
HOH
HOH
317
A
HOH
18
3
HOH
HOH
318
A
HOH
19
3
HOH
HOH
319
A
HOH
20
3
HOH
HOH
320
A
HOH
21
3
HOH
HOH
321
A
HOH
22
3
HOH
HOH
322
A
HOH
23
3
HOH
HOH
323
A
HOH
24
3
HOH
HOH
324
A
HOH
25
3
HOH
HOH
325
A
HOH
26
3
HOH
HOH
326
A
HOH
27
3
HOH
HOH
327
A
HOH
28
3
HOH
HOH
328
A
HOH
29
3
HOH
HOH
329
A
HOH
30
3
HOH
HOH
330
A
HOH
31
3
HOH
HOH
331
A
HOH
32
3
HOH
HOH
332
A
HOH
33
3
HOH
HOH
333
A
HOH
34
3
HOH
HOH
334
A
HOH
35
3
HOH
HOH
335
A
HOH
36
3
HOH
HOH
336
A
HOH
37
3
HOH
HOH
337
A
HOH
38
3
HOH
HOH
338
A
HOH
39
3
HOH
HOH
339
A
HOH
40
3
HOH
HOH
340
A
HOH
41
3
HOH
HOH
341
A
HOH
42
3
HOH
HOH
342
A
HOH
43
3
HOH
HOH
343
A
HOH
44
3
HOH
HOH
344
A
HOH
45
3
HOH
HOH
345
A
HOH
46
3
HOH
HOH
346
A
HOH
47
3
HOH
HOH
347
A
HOH
48
3
HOH
HOH
348
A
HOH
49
3
HOH
HOH
349
A
HOH
50
3
HOH
HOH
350
A
HOH
51
3
HOH
HOH
351
A
HOH
52
3
HOH
HOH
352
A
HOH
53
3
HOH
HOH
353
A
HOH
54
3
HOH
HOH
354
A
HOH
55
3
HOH
HOH
355
A
HOH
56
3
HOH
HOH
356
A
HOH
57
3
HOH
HOH
357
A
HOH
58
3
HOH
HOH
358
A
HOH
59
3
HOH
HOH
359
A
HOH
60
3
HOH
HOH
360
A
HOH
61
3
HOH
HOH
361
A
HOH
62
3
HOH
HOH
362
A
HOH
63
3
HOH
HOH
363
A
HOH
64
3
HOH
HOH
364
A
HOH
65
3
HOH
HOH
365
A
HOH
66
3
HOH
HOH
366
A
HOH
67
3
HOH
HOH
367
A
HOH
68
3
HOH
HOH
368
A
HOH
69
3
HOH
HOH
369
A
HOH
70
3
HOH
HOH
370
A
HOH
71
3
HOH
HOH
371
A
HOH
72
3
HOH
HOH
372
A
HOH
73
3
HOH
HOH
373
A
HOH
74
3
HOH
HOH
374
A
HOH
75
3
HOH
HOH
375
A
HOH
76
3
HOH
HOH
376
A
HOH
77
3
HOH
HOH
377
A
HOH
78
3
HOH
HOH
378
A
HOH
79
3
HOH
HOH
379
A
HOH
80
3
HOH
HOH
380
A
HOH
81
3
HOH
HOH
381
A
HOH
82
3
HOH
HOH
382
A
HOH
83
3
HOH
HOH
383
A
HOH
84
3
HOH
HOH
384
A
HOH
85
3
HOH
HOH
385
A
HOH
86
3
HOH
HOH
386
A
HOH
87
3
HOH
HOH
387
A
HOH
88
3
HOH
HOH
388
A
HOH
89
3
HOH
HOH
389
A
HOH
90
3
HOH
HOH
390
A
HOH
91
3
HOH
HOH
391
A
HOH
92
3
HOH
HOH
392
A
HOH
93
3
HOH
HOH
393
A
HOH
94
3
HOH
HOH
394
A
HOH
95
3
HOH
HOH
395
A
HOH
96
3
HOH
HOH
396
A
HOH
97
3
HOH
HOH
397
A
HOH
98
3
HOH
HOH
398
A
HOH
99
3
HOH
HOH
399
A
HOH
100
3
HOH
HOH
400
A
HOH
101
3
HOH
HOH
401
A
HOH
102
3
HOH
HOH
402
A
HOH
103
3
HOH
HOH
403
A
HOH
104
3
HOH
HOH
404
A
HOH
105
3
HOH
HOH
405
A
HOH
106
3
HOH
HOH
406
A
HOH
107
3
HOH
HOH
407
A
HOH
108
3
HOH
HOH
408
A
HOH
109
3
HOH
HOH
409
A
HOH
110
3
HOH
HOH
410
A
HOH
111
3
HOH
HOH
411
A
HOH
112
3
HOH
HOH
412
A
HOH
113
3
HOH
HOH
413
A
HOH
114
3
HOH
HOH
414
A
HOH
115
3
HOH
HOH
415
A
HOH
117
3
HOH
HOH
416
A
HOH
118
3
HOH
HOH
417
A
HOH
119
3
HOH
HOH
418
A
HOH
120
3
HOH
HOH
419
A
HOH
121
3
HOH
HOH
420
A
HOH
122
3
HOH
HOH
421
A
HOH
123
3
HOH
HOH
422
A
HOH
124
3
HOH
HOH
423
A
HOH
125
3
HOH
HOH
424
A
HOH
126
3
HOH
HOH
425
A
HOH
127
3
HOH
HOH
426
A
HOH
128
3
HOH
HOH
427
A
HOH
129
3
HOH
HOH
428
A
HOH
130
3
HOH
HOH
429
A
1.520
1.520
47.000
30.310
Phaser MODE: MR_AUTO
n
1
22
A
n
2
23
A
n
3
24
A
n
4
25
A
n
5
26
A
n
6
27
A
n
7
28
A
n
8
29
A
n
9
30
A
n
10
31
A
n
11
32
A
n
12
33
A
n
13
34
A
n
14
35
A
n
15
36
A
n
16
37
A
n
17
38
A
n
18
39
A
n
19
40
A
n
20
41
A
n
21
42
A
MET
43
n
22
MET
43
A
ASN
44
n
23
ASN
44
A
PRO
45
n
24
PRO
45
A
PRO
46
n
25
PRO
46
A
PRO
47
n
26
PRO
47
A
PRO
48
n
27
PRO
48
A
GLU
49
n
28
GLU
49
A
THR
50
n
29
THR
50
A
SER
51
n
30
SER
51
A
ASN
52
n
31
ASN
52
A
PRO
53
n
32
PRO
53
A
ASN
54
n
33
ASN
54
A
LYS
55
n
34
LYS
55
A
PRO
56
n
35
PRO
56
A
LYS
57
n
36
LYS
57
A
ARG
58
n
37
ARG
58
A
GLN
59
n
38
GLN
59
A
THR
60
n
39
THR
60
A
ASN
61
n
40
ASN
61
A
GLN
62
n
41
GLN
62
A
LEU
63
n
42
LEU
63
A
GLN
64
n
43
GLN
64
A
TYR
65
n
44
TYR
65
A
LEU
66
n
45
LEU
66
A
LEU
67
n
46
LEU
67
A
ARG
68
n
47
ARG
68
A
VAL
69
n
48
VAL
69
A
VAL
70
n
49
VAL
70
A
LEU
71
n
50
LEU
71
A
LYS
72
n
51
LYS
72
A
THR
73
n
52
THR
73
A
LEU
74
n
53
LEU
74
A
TRP
75
n
54
TRP
75
A
LYS
76
n
55
LYS
76
A
HIS
77
n
56
HIS
77
A
GLN
78
n
57
GLN
78
A
PHE
79
n
58
PHE
79
A
ALA
80
n
59
ALA
80
A
TRP
81
n
60
TRP
81
A
PRO
82
n
61
PRO
82
A
PHE
83
n
62
PHE
83
A
GLN
84
n
63
GLN
84
A
GLN
85
n
64
GLN
85
A
PRO
86
n
65
PRO
86
A
VAL
87
n
66
VAL
87
A
ASP
88
n
67
ASP
88
A
ALA
89
n
68
ALA
89
A
VAL
90
n
69
VAL
90
A
LYS
91
n
70
LYS
91
A
LEU
92
n
71
LEU
92
A
ASN
93
n
72
ASN
93
A
LEU
94
n
73
LEU
94
A
PRO
95
n
74
PRO
95
A
ASP
96
n
75
ASP
96
A
TYR
97
n
76
TYR
97
A
TYR
98
n
77
TYR
98
A
LYS
99
n
78
LYS
99
A
ILE
100
n
79
ILE
100
A
ILE
101
n
80
ILE
101
A
LYS
102
n
81
LYS
102
A
THR
103
n
82
THR
103
A
PRO
104
n
83
PRO
104
A
MET
105
n
84
MET
105
A
ASP
106
n
85
ASP
106
A
MET
107
n
86
MET
107
A
GLY
108
n
87
GLY
108
A
THR
109
n
88
THR
109
A
ILE
110
n
89
ILE
110
A
LYS
111
n
90
LYS
111
A
LYS
112
n
91
LYS
112
A
ARG
113
n
92
ARG
113
A
LEU
114
n
93
LEU
114
A
GLU
115
n
94
GLU
115
A
ASN
116
n
95
ASN
116
A
ASN
117
n
96
ASN
117
A
TYR
118
n
97
TYR
118
A
TYR
119
n
98
TYR
119
A
TRP
120
n
99
TRP
120
A
ASN
121
n
100
ASN
121
A
ALA
122
n
101
ALA
122
A
GLN
123
n
102
GLN
123
A
GLU
124
n
103
GLU
124
A
CYS
125
n
104
CYS
125
A
ILE
126
n
105
ILE
126
A
GLN
127
n
106
GLN
127
A
ASP
128
n
107
ASP
128
A
PHE
129
n
108
PHE
129
A
ASN
130
n
109
ASN
130
A
THR
131
n
110
THR
131
A
MET
132
n
111
MET
132
A
PHE
133
n
112
PHE
133
A
THR
134
n
113
THR
134
A
ASN
135
n
114
ASN
135
A
CYS
136
n
115
CYS
136
A
TYR
137
n
116
TYR
137
A
ILE
138
n
117
ILE
138
A
TYR
139
n
118
TYR
139
A
ASN
140
n
119
ASN
140
A
LYS
141
n
120
LYS
141
A
PRO
142
n
121
PRO
142
A
GLY
143
n
122
GLY
143
A
ASP
144
n
123
ASP
144
A
ASP
145
n
124
ASP
145
A
ILE
146
n
125
ILE
146
A
VAL
147
n
126
VAL
147
A
LEU
148
n
127
LEU
148
A
MET
149
n
128
MET
149
A
ALA
150
n
129
ALA
150
A
GLU
151
n
130
GLU
151
A
ALA
152
n
131
ALA
152
A
LEU
153
n
132
LEU
153
A
GLU
154
n
133
GLU
154
A
LYS
155
n
134
LYS
155
A
LEU
156
n
135
LEU
156
A
PHE
157
n
136
PHE
157
A
LEU
158
n
137
LEU
158
A
GLN
159
n
138
GLN
159
A
LYS
160
n
139
LYS
160
A
ILE
161
n
140
ILE
161
A
ASN
162
n
141
ASN
162
A
GLU
163
n
142
GLU
163
A
LEU
164
n
143
LEU
164
A
PRO
165
n
144
PRO
165
A
THR
166
n
145
THR
166
A
0.1615
0.2126
0.2462
0.2812
0.3266
0.6393
0.0260
-0.0347
-0.0273
0.1697
-0.0803
-0.0749
0.1290
-0.0676
0.0076
0.1769
-0.0025
-0.0210
0.1244
0.0026
0.1280
refined
11.0578
0.9450
21.3228
X-RAY DIFFRACTION
0.4751
0.3933
0.0942
1.0808
0.0221
0.0231
-0.0844
-0.1127
0.0250
-0.1491
0.0578
0.2233
-0.0711
-0.0914
0.0473
0.1044
0.0744
-0.0924
0.0806
-0.0048
0.1559
refined
2.1904
12.1613
10.2796
X-RAY DIFFRACTION
1.1475
-0.7633
0.5714
0.5187
-0.4075
0.3361
0.1495
-0.1563
-0.0905
-0.2638
0.0593
0.0512
0.1280
0.0226
-0.1030
0.0504
0.0552
-0.1088
-0.0002
0.0488
0.0651
refined
10.8327
-6.3361
4.3397
X-RAY DIFFRACTION
0.6146
0.5144
0.2255
0.4547
0.1025
0.3915
0.0405
-0.1975
0.1821
0.0244
-0.0187
0.1536
0.0137
-0.2464
-0.0225
0.0067
-0.0054
-0.0062
0.1098
0.0317
0.0910
refined
5.1729
3.3414
14.5429
X-RAY DIFFRACTION
0.2697
0.0485
0.1084
0.5037
0.2058
0.4544
-0.0505
0.0297
0.0413
-0.0509
0.0374
-0.0738
0.0260
-0.0923
0.0023
0.1359
-0.0150
0.0001
0.0968
0.0023
0.0948
refined
14.1665
4.5506
8.6043
X-RAY DIFFRACTION
0.1473
0.1944
0.0667
0.3742
0.0725
0.0300
-0.1010
0.0932
-0.0126
-0.3127
0.1251
0.0268
0.0421
-0.0070
-0.0091
0.2495
-0.0433
-0.0384
0.0854
0.0124
0.0753
refined
9.8506
7.7950
-1.8403
X-RAY DIFFRACTION
0.8644
0.1149
-0.1976
0.0599
-0.2001
0.7289
0.0548
-0.0141
0.3908
-0.2239
0.0367
-0.2024
-0.2834
-0.0571
-0.0925
0.2845
0.0687
-0.0188
0.1055
-0.0184
0.2336
refined
8.3069
22.4586
9.1225
X-RAY DIFFRACTION
A
43
A
60
X-RAY DIFFRACTION
1
chain 'A' and (resseq 43:60)
A
61
A
76
X-RAY DIFFRACTION
2
chain 'A' and (resseq 61:76)
A
77
A
106
X-RAY DIFFRACTION
3
chain 'A' and (resseq 77:106)
A
107
A
115
X-RAY DIFFRACTION
4
chain 'A' and (resseq 107:115)
A
116
A
144
X-RAY DIFFRACTION
5
chain 'A' and (resseq 116:144)
A
145
A
161
X-RAY DIFFRACTION
6
chain 'A' and (resseq 145:161)
A
162
A
166
X-RAY DIFFRACTION
7
chain 'A' and (resseq 162:166)
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
MET
22
A
MET
1
1
Y
1
A
HIS
23
A
HIS
2
1
Y
1
A
HIS
24
A
HIS
3
1
Y
1
A
HIS
25
A
HIS
4
1
Y
1
A
HIS
26
A
HIS
5
1
Y
1
A
HIS
27
A
HIS
6
1
Y
1
A
HIS
28
A
HIS
7
1
Y
1
A
SER
29
A
SER
8
1
Y
1
A
SER
30
A
SER
9
1
Y
1
A
GLY
31
A
GLY
10
1
Y
1
A
VAL
32
A
VAL
11
1
Y
1
A
ASP
33
A
ASP
12
1
Y
1
A
LEU
34
A
LEU
13
1
Y
1
A
GLY
35
A
GLY
14
1
Y
1
A
THR
36
A
THR
15
1
Y
1
A
GLU
37
A
GLU
16
1
Y
1
A
ASN
38
A
ASN
17
1
Y
1
A
LEU
39
A
LEU
18
1
Y
1
A
TYR
40
A
TYR
19
1
Y
1
A
PHE
41
A
PHE
20
1
Y
1
A
GLN
42
A
GLN
21
1
Y
1
A
LEU
94
-118.60
66.37
103.560
25.1107
11.610
17.6776
-0.0000
-0.0000
-10.4225
0.0000
-7.2551
0.2183
0.2011
0.2016
1.5200
30.3090
580
19328
3.0000
99.4400
1.000
0.500
0.7822
0.1900
RANDOM
1
1.990
MOLECULAR REPLACEMENT
26.8200
0.7200
1.0000
ML
FLAT BULK SOLVENT MODEL
54.3430
0.3950
1.5200
30.3090
129
1178
12
0
1037
0.005
1091
0.952
1489
0.064
158
0.005
191
11.665
420
0.3172
0.2986
1.6729
143
4610
4753
4
100.0000
0.2724
0.2281
1.9149
144
4642
4786
4
100.0000
0.2137
0.1853
2.4125
144
4663
4807
4
100.0000
0.1886
0.1839
30.3150
149
4833
4982
4
99.0000
21.413
1.52
30.31
4DON
27637
19456
-3.000
0.186
1
3.800
97.800
1.845
1.340
1.420
0.870
11682
4498
3955
1.254
1
87.900
1.140
1.420
1.520
1.510
16452
4220
4217
0.873
1
99.900
0.767
1.520
1.640
2.250
15508
3964
3959
0.573
1
99.900
0.523
1.640
1.800
3.080
14275
3630
3625
0.412
1
99.900
0.339
1.800
2.010
4.220
12880
3297
3294
0.294
1
99.900
0.179
2.010
2.320
5.880
11540
2961
2958
0.206
1
99.900
0.134
2.320
2.840
7.070
9735
2516
2510
0.184
1
99.800
0.102
2.840
4.000
8.390
7437
1993
1987
0.180
1
99.700
0.102
4.000
8.280
3846
1193
1131
0.178
1
94.800
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Wed Jun 24 14:00:05 2009
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.1.4
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.7_650
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
ADSC
Quantum
data reduction
XDS
Brd4 Bromodomain 1 complex with a fragment 3,4-Dihydro-3-methyl-2(1H)-quinazolinon
1
N
N
2
N
N
3
N
N
A
THR
60
A
THR
39
HELX_P
A
VAL
69
A
VAL
48
1
1
10
A
VAL
69
A
VAL
48
HELX_P
A
TRP
75
A
TRP
54
1
2
7
A
ALA
80
A
ALA
59
HELX_P
A
GLN
84
A
GLN
63
5
3
5
A
ASP
96
A
ASP
75
HELX_P
A
ILE
101
A
ILE
80
1
4
6
A
ASP
106
A
ASP
85
HELX_P
A
ASN
116
A
ASN
95
1
5
11
A
ASN
121
A
ASN
100
HELX_P
A
ASN
140
A
ASN
119
1
6
20
A
ASP
144
A
ASP
123
HELX_P
A
ASN
162
A
ASN
141
1
7
19
SIGNALING PROTEIN
BRD4, Bromodomain, four alpha helices, SIGNALING PROTEIN
BRD4_HUMAN
UNP
1
44
O60885
NPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQ
ECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPT
44
166
4DON
44
166
O60885
A
1
23
145
1
expression tag
MET
22
4DON
A
O60885
UNP
1
1
expression tag
HIS
23
4DON
A
O60885
UNP
2
1
expression tag
HIS
24
4DON
A
O60885
UNP
3
1
expression tag
HIS
25
4DON
A
O60885
UNP
4
1
expression tag
HIS
26
4DON
A
O60885
UNP
5
1
expression tag
HIS
27
4DON
A
O60885
UNP
6
1
expression tag
HIS
28
4DON
A
O60885
UNP
7
1
expression tag
SER
29
4DON
A
O60885
UNP
8
1
expression tag
SER
30
4DON
A
O60885
UNP
9
1
expression tag
GLY
31
4DON
A
O60885
UNP
10
1
expression tag
VAL
32
4DON
A
O60885
UNP
11
1
expression tag
ASP
33
4DON
A
O60885
UNP
12
1
expression tag
LEU
34
4DON
A
O60885
UNP
13
1
expression tag
GLY
35
4DON
A
O60885
UNP
14
1
expression tag
THR
36
4DON
A
O60885
UNP
15
1
expression tag
GLU
37
4DON
A
O60885
UNP
16
1
expression tag
ASN
38
4DON
A
O60885
UNP
17
1
expression tag
LEU
39
4DON
A
O60885
UNP
18
1
expression tag
TYR
40
4DON
A
O60885
UNP
19
1
expression tag
PHE
41
4DON
A
O60885
UNP
20
1
expression tag
GLN
42
4DON
A
O60885
UNP
21
1
expression tag
MET
43
4DON
A
O60885
UNP
22
BINDING SITE FOR RESIDUE 3PF A 201
A
3PF
201
Software
7
A
PRO
82
A
PRO
61
7
1_555
A
VAL
87
A
VAL
66
7
1_555
A
LEU
92
A
LEU
71
7
1_555
A
ASN
140
A
ASN
119
7
1_555
A
ILE
146
A
ILE
125
7
1_555
A
HOH
308
C
HOH
7
1_555
A
HOH
314
C
HOH
7
1_555
19
P 21 21 21