0.034468
0.000000
0.000000
0.000000
0.021573
0.000000
0.000000
0.000000
0.017516
0.00000
0.00000
0.00000
Kachalova, G.S.
Shosheva, A.H.
Bourenkov, G.P.
Donchev, A.A.
Dimitrov, M.I.
Bartunik, H.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
29.012
46.354
57.091
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cu 2
63.546
COPPER (II) ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
O
N
21
N
N
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
N
N
32
S
C
N
33
N
C
N
34
N
O
N
35
N
C
N
36
N
C
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
CU
N
48
N
N
N
49
R
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
S
N
54
N
O
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
N
N
63
S
C
N
64
N
C
N
65
N
O
N
66
N
C
N
67
N
C
N
68
N
C
N
69
N
O
N
70
N
N
N
71
N
O
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
N
N
83
S
C
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
O
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
N
N
102
N
C
N
103
N
C
N
104
N
O
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
S
C
N
113
N
C
N
114
N
O
N
115
N
C
Y
116
N
C
Y
117
N
N
Y
118
N
C
Y
119
N
C
Y
120
N
N
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
N
N
136
S
C
N
137
N
C
N
138
N
O
N
139
S
C
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
N
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
C
N
210
N
S
N
211
N
C
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
N
N
225
S
C
N
226
N
C
N
227
N
O
N
228
N
C
Y
229
N
C
Y
230
N
C
Y
231
N
C
Y
232
N
C
Y
233
N
C
Y
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
N
269
N
O
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
R
C
N
283
N
O
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
N
306
N
O
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
C
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
doub
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
doub
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
Y
114
N
sing
Y
115
N
doub
Y
116
N
doub
N
117
N
sing
Y
118
N
sing
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
Y
222
N
doub
Y
223
N
sing
Y
224
N
sing
N
225
N
sing
Y
226
N
doub
N
227
N
sing
Y
228
N
doub
N
229
N
sing
Y
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
Y
291
N
doub
Y
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
doub
N
296
N
sing
Y
297
N
doub
N
298
N
sing
Y
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
US
J.Inorg.Biochem.
JIBIDJ
0525
0162-0134
115
174
181
10.1016/j.jinorgbio.2012.07.015
22883960
Structural comparison of the poplar plastocyanin isoforms PCa and PCb sheds new light on the role of the copper site geometry in interactions with redox partners in oxygenic photosynthesis.
2012
10.2210/pdb4dp9/pdb
pdb_00004dp9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
CCD
2002-02-21
MAR CCD 165 mm
double crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.05
1.0
BW6
MPG/DESY, HAMBURG
1.05
SYNCHROTRON
MPG/DESY, HAMBURG BEAMLINE BW6
10493.607
Plastocyanin A, chloroplastic
UNP residues 70-168
1
nat
polymer
63.546
COPPER (II) ION
1
syn
non-polymer
18.015
water
213
nat
water
no
no
IDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNKGEY
SFYCSPHQGAGMVGKVTVN
IDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNKGEY
SFYCSPHQGAGMVGKVTVN
X
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lombardy poplar
sample
3691
chloroplast
Populus nigra
cv. Italica
leaf
1
1.83
32.75
VAPOR DIFFUSION, HANGING DROP
6.0
2.6 M ammonium sulfate, 0.1 M sodium phosphate buffer, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-02-13
1
1
2017-11-15
1
2
2023-09-13
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The crystal structure of the plastocyanin A
The 1.5 Angstrom crystal structure of oxidized (CuII) poplar plastocyanin B at pH 4.0
The 1.35 Angstrom crystal structure of reduced (CuI) poplar plastocyanin B at pH 4.0
The 1.8 Angstrom crystal structure of oxidized (CuII) poplar plastocyanin B at pH 6.0
The 1.54 Angstrom crystal structure of reduced (CuI) poplar plastocyanin B at pH 6.0
The 1.88 Angstrom crystal structure of oxidized (CuII) poplar plastocyanin B at pH 8.0
The 1.67 Angstrom crystal structure of reduced (CuI) poplar plastocyanin B at pH 8.0
The 1.08 Angstrom crystal structure of oxidized (CuII) poplar plastocyanin A at pH 4.0
The 1.07 Angstrom crystal structure of reduced (CuI) poplar plastocyanin A at pH 4.0
The 1.05 Angstrom crystal structure of reduced (CuI) poplar plastocyanin A at pH 6.0
The 1.00 Angstrom crystal structure of oxidized (CuII) poplar plastocyanin A at pH 8.0
The 1.06 Angstrom crystal structure of reduced (CuI) poplar plastocyanin A at pH 8.0
RCSB
Y
RCSB
2012-02-13
REL
REL
CU
COPPER (II) ION
HOH
water
1PLC
PDB ENTRY 1PLC
PDB
experimental model
CU
100
2
CU
CU
100
X
HOH
1001
3
HOH
HOH
1001
X
HOH
1002
3
HOH
HOH
1002
X
HOH
1003
3
HOH
HOH
1003
X
HOH
1004
3
HOH
HOH
1004
X
HOH
1005
3
HOH
HOH
1005
X
HOH
1006
3
HOH
HOH
1006
X
HOH
1007
3
HOH
HOH
1007
X
HOH
1008
3
HOH
HOH
1008
X
HOH
1009
3
HOH
HOH
1009
X
HOH
1010
3
HOH
HOH
1010
X
HOH
1011
3
HOH
HOH
1011
X
HOH
1012
3
HOH
HOH
1012
X
HOH
1013
3
HOH
HOH
1013
X
HOH
1014
3
HOH
HOH
1014
X
HOH
1016
3
HOH
HOH
1015
X
HOH
1017
3
HOH
HOH
1016
X
HOH
1018
3
HOH
HOH
1017
X
HOH
1019
3
HOH
HOH
1018
X
HOH
1020
3
HOH
HOH
1019
X
HOH
1021
3
HOH
HOH
1020
X
HOH
1022
3
HOH
HOH
1021
X
HOH
1023
3
HOH
HOH
1022
X
HOH
1024
3
HOH
HOH
1023
X
HOH
1025
3
HOH
HOH
1024
X
HOH
1026
3
HOH
HOH
1025
X
HOH
1027
3
HOH
HOH
1026
X
HOH
1028
3
HOH
HOH
1027
X
HOH
1029
3
HOH
HOH
1028
X
HOH
1030
3
HOH
HOH
1029
X
HOH
1031
3
HOH
HOH
1030
X
HOH
1032
3
HOH
HOH
1031
X
HOH
1033
3
HOH
HOH
1032
X
HOH
1034
3
HOH
HOH
1033
X
HOH
1035
3
HOH
HOH
1034
X
HOH
1036
3
HOH
HOH
1035
X
HOH
1037
3
HOH
HOH
1036
X
HOH
1038
3
HOH
HOH
1037
X
HOH
1039
3
HOH
HOH
1038
X
HOH
1040
3
HOH
HOH
1039
X
HOH
1041
3
HOH
HOH
1040
X
HOH
1042
3
HOH
HOH
1041
X
HOH
1043
3
HOH
HOH
1042
X
HOH
1044
3
HOH
HOH
1043
X
HOH
1045
3
HOH
HOH
1044
X
HOH
1046
3
HOH
HOH
1045
X
HOH
1047
3
HOH
HOH
1046
X
HOH
1048
3
HOH
HOH
1047
X
HOH
1049
3
HOH
HOH
1048
X
HOH
1050
3
HOH
HOH
1049
X
HOH
1051
3
HOH
HOH
1050
X
HOH
1052
3
HOH
HOH
1051
X
HOH
1053
3
HOH
HOH
1052
X
HOH
1054
3
HOH
HOH
1053
X
HOH
1055
3
HOH
HOH
1054
X
HOH
1056
3
HOH
HOH
1055
X
HOH
1057
3
HOH
HOH
1056
X
HOH
1058
3
HOH
HOH
1057
X
HOH
1059
3
HOH
HOH
1058
X
HOH
1061
3
HOH
HOH
1059
X
HOH
1062
3
HOH
HOH
1060
X
HOH
1063
3
HOH
HOH
1061
X
HOH
1064
3
HOH
HOH
1062
X
HOH
1065
3
HOH
HOH
1063
X
HOH
1066
3
HOH
HOH
1064
X
HOH
1067
3
HOH
HOH
1065
X
HOH
1069
3
HOH
HOH
1066
X
HOH
1070
3
HOH
HOH
1067
X
HOH
1071
3
HOH
HOH
1068
X
HOH
1072
3
HOH
HOH
1069
X
HOH
1073
3
HOH
HOH
1070
X
HOH
1074
3
HOH
HOH
1071
X
HOH
1075
3
HOH
HOH
1072
X
HOH
1076
3
HOH
HOH
1073
X
HOH
1077
3
HOH
HOH
1074
X
HOH
1078
3
HOH
HOH
1075
X
HOH
1079
3
HOH
HOH
1076
X
HOH
1080
3
HOH
HOH
1077
X
HOH
1081
3
HOH
HOH
1078
X
HOH
1082
3
HOH
HOH
1079
X
HOH
1083
3
HOH
HOH
1080
X
HOH
1084
3
HOH
HOH
1081
X
HOH
1085
3
HOH
HOH
1082
X
HOH
1089
3
HOH
HOH
1083
X
HOH
1090
3
HOH
HOH
1084
X
HOH
1092
3
HOH
HOH
1085
X
HOH
1093
3
HOH
HOH
1086
X
HOH
1094
3
HOH
HOH
1087
X
HOH
1095
3
HOH
HOH
1088
X
HOH
1096
3
HOH
HOH
1089
X
HOH
1097
3
HOH
HOH
1090
X
HOH
1099
3
HOH
HOH
1091
X
HOH
1100
3
HOH
HOH
1092
X
HOH
1101
3
HOH
HOH
1093
X
HOH
1102
3
HOH
HOH
1094
X
HOH
1103
3
HOH
HOH
1095
X
HOH
1104
3
HOH
HOH
1096
X
HOH
1105
3
HOH
HOH
1097
X
HOH
1107
3
HOH
HOH
1098
X
HOH
1110
3
HOH
HOH
1099
X
HOH
1111
3
HOH
HOH
1100
X
HOH
1113
3
HOH
HOH
1101
X
HOH
1114
3
HOH
HOH
1102
X
HOH
1116
3
HOH
HOH
1103
X
HOH
1117
3
HOH
HOH
1104
X
HOH
1118
3
HOH
HOH
1105
X
HOH
1119
3
HOH
HOH
1106
X
HOH
1121
3
HOH
HOH
1107
X
HOH
1122
3
HOH
HOH
1108
X
HOH
1123
3
HOH
HOH
1109
X
HOH
1127
3
HOH
HOH
1110
X
HOH
1130
3
HOH
HOH
1111
X
HOH
1131
3
HOH
HOH
1112
X
HOH
1134
3
HOH
HOH
1113
X
HOH
1135
3
HOH
HOH
1114
X
HOH
1136
3
HOH
HOH
1115
X
HOH
1138
3
HOH
HOH
1116
X
HOH
1139
3
HOH
HOH
1117
X
HOH
1140
3
HOH
HOH
1118
X
HOH
1144
3
HOH
HOH
1119
X
HOH
1145
3
HOH
HOH
1120
X
HOH
1147
3
HOH
HOH
1121
X
HOH
1148
3
HOH
HOH
1122
X
HOH
1150
3
HOH
HOH
1123
X
HOH
1151
3
HOH
HOH
1124
X
HOH
1155
3
HOH
HOH
1125
X
HOH
1156
3
HOH
HOH
1126
X
HOH
1157
3
HOH
HOH
1127
X
HOH
1158
3
HOH
HOH
1128
X
HOH
1160
3
HOH
HOH
1129
X
HOH
1162
3
HOH
HOH
1130
X
HOH
1165
3
HOH
HOH
1131
X
HOH
1166
3
HOH
HOH
1132
X
HOH
1167
3
HOH
HOH
1133
X
HOH
1168
3
HOH
HOH
1134
X
HOH
1173
3
HOH
HOH
1135
X
HOH
1183
3
HOH
HOH
1136
X
HOH
1188
3
HOH
HOH
1137
X
HOH
1189
3
HOH
HOH
1138
X
HOH
1192
3
HOH
HOH
1139
X
HOH
1195
3
HOH
HOH
1140
X
HOH
1197
3
HOH
HOH
1141
X
HOH
1199
3
HOH
HOH
1142
X
HOH
1206
3
HOH
HOH
1143
X
HOH
1207
3
HOH
HOH
1144
X
HOH
3001
3
HOH
HOH
1145
X
HOH
3002
3
HOH
HOH
1146
X
HOH
3003
3
HOH
HOH
1147
X
HOH
3007
3
HOH
HOH
1148
X
HOH
3008
3
HOH
HOH
1149
X
HOH
3009
3
HOH
HOH
1150
X
HOH
3010
3
HOH
HOH
1151
X
HOH
3011
3
HOH
HOH
1152
X
HOH
3013
3
HOH
HOH
1153
X
HOH
3022
3
HOH
HOH
1154
X
HOH
3023
3
HOH
HOH
1155
X
HOH
3027
3
HOH
HOH
1156
X
HOH
3028
3
HOH
HOH
1157
X
HOH
3029
3
HOH
HOH
1158
X
HOH
3031
3
HOH
HOH
1159
X
HOH
3032
3
HOH
HOH
1160
X
HOH
3033
3
HOH
HOH
1161
X
HOH
3036
3
HOH
HOH
1162
X
HOH
3039
3
HOH
HOH
1163
X
HOH
3040
3
HOH
HOH
1164
X
HOH
3042
3
HOH
HOH
1165
X
HOH
3045
3
HOH
HOH
1166
X
HOH
3046
3
HOH
HOH
1167
X
HOH
3047
3
HOH
HOH
1168
X
HOH
3048
3
HOH
HOH
1169
X
HOH
3056
3
HOH
HOH
1170
X
HOH
3066
3
HOH
HOH
1171
X
HOH
3073
3
HOH
HOH
1172
X
HOH
3075
3
HOH
HOH
1173
X
HOH
3076
3
HOH
HOH
1174
X
HOH
3081
3
HOH
HOH
1175
X
HOH
3084
3
HOH
HOH
1176
X
HOH
3086
3
HOH
HOH
1177
X
HOH
3088
3
HOH
HOH
1178
X
HOH
3093
3
HOH
HOH
1179
X
HOH
3097
3
HOH
HOH
1180
X
HOH
3109
3
HOH
HOH
1181
X
HOH
3201
3
HOH
HOH
1182
X
HOH
3202
3
HOH
HOH
1183
X
HOH
3205
3
HOH
HOH
1184
X
HOH
3301
3
HOH
HOH
1185
X
HOH
3302
3
HOH
HOH
1186
X
HOH
3401
3
HOH
HOH
1187
X
HOH
3402
3
HOH
HOH
1188
X
HOH
3406
3
HOH
HOH
1189
X
HOH
3409
3
HOH
HOH
1190
X
HOH
3410
3
HOH
HOH
1191
X
HOH
3408
3
HOH
HOH
1192
X
HOH
3411
3
HOH
HOH
1193
X
HOH
3414
3
HOH
HOH
1194
X
HOH
3501
3
HOH
HOH
1195
X
HOH
3502
3
HOH
HOH
1196
X
HOH
3503
3
HOH
HOH
1197
X
HOH
3504
3
HOH
HOH
1198
X
HOH
3505
3
HOH
HOH
1199
X
HOH
3506
3
HOH
HOH
1200
X
HOH
3507
3
HOH
HOH
1201
X
HOH
3508
3
HOH
HOH
1202
X
HOH
3509
3
HOH
HOH
1203
X
HOH
3610
3
HOH
HOH
1204
X
HOH
3611
3
HOH
HOH
1205
X
HOH
3612
3
HOH
HOH
1206
X
HOH
3613
3
HOH
HOH
1207
X
HOH
3614
3
HOH
HOH
1208
X
HOH
3615
3
HOH
HOH
1209
X
HOH
3616
3
HOH
HOH
1210
X
HOH
3618
3
HOH
HOH
1211
X
HOH
3619
3
HOH
HOH
1212
X
HOH
3620
3
HOH
HOH
1213
X
ILE
1
n
1
ILE
1
X
ASP
2
n
2
ASP
2
X
VAL
3
n
3
VAL
3
X
LEU
4
n
4
LEU
4
X
LEU
5
n
5
LEU
5
X
GLY
6
n
6
GLY
6
X
ALA
7
n
7
ALA
7
X
ASP
8
n
8
ASP
8
X
ASP
9
n
9
ASP
9
X
GLY
10
n
10
GLY
10
X
SER
11
n
11
SER
11
X
LEU
12
n
12
LEU
12
X
ALA
13
n
13
ALA
13
X
PHE
14
n
14
PHE
14
X
VAL
15
n
15
VAL
15
X
PRO
16
n
16
PRO
16
X
SER
17
n
17
SER
17
X
GLU
18
n
18
GLU
18
X
PHE
19
n
19
PHE
19
X
SER
20
n
20
SER
20
X
ILE
21
n
21
ILE
21
X
SER
22
n
22
SER
22
X
PRO
23
n
23
PRO
23
X
GLY
24
n
24
GLY
24
X
GLU
25
n
25
GLU
25
X
LYS
26
n
26
LYS
26
X
ILE
27
n
27
ILE
27
X
VAL
28
n
28
VAL
28
X
PHE
29
n
29
PHE
29
X
LYS
30
n
30
LYS
30
X
ASN
31
n
31
ASN
31
X
ASN
32
n
32
ASN
32
X
ALA
33
n
33
ALA
33
X
GLY
34
n
34
GLY
34
X
PHE
35
n
35
PHE
35
X
PRO
36
n
36
PRO
36
X
HIS
37
n
37
HIS
37
X
ASN
38
n
38
ASN
38
X
ILE
39
n
39
ILE
39
X
VAL
40
n
40
VAL
40
X
PHE
41
n
41
PHE
41
X
ASP
42
n
42
ASP
42
X
GLU
43
n
43
GLU
43
X
ASP
44
n
44
ASP
44
X
SER
45
n
45
SER
45
X
ILE
46
n
46
ILE
46
X
PRO
47
n
47
PRO
47
X
SER
48
n
48
SER
48
X
GLY
49
n
49
GLY
49
X
VAL
50
n
50
VAL
50
X
ASP
51
n
51
ASP
51
X
ALA
52
n
52
ALA
52
X
SER
53
n
53
SER
53
X
LYS
54
n
54
LYS
54
X
ILE
55
n
55
ILE
55
X
SER
56
n
56
SER
56
X
MET
57
n
57
MET
57
X
SER
58
n
58
SER
58
X
GLU
59
n
59
GLU
59
X
GLU
60
n
60
GLU
60
X
ASP
61
n
61
ASP
61
X
LEU
62
n
62
LEU
62
X
LEU
63
n
63
LEU
63
X
ASN
64
n
64
ASN
64
X
ALA
65
n
65
ALA
65
X
LYS
66
n
66
LYS
66
X
GLY
67
n
67
GLY
67
X
GLU
68
n
68
GLU
68
X
THR
69
n
69
THR
69
X
PHE
70
n
70
PHE
70
X
GLU
71
n
71
GLU
71
X
VAL
72
n
72
VAL
72
X
ALA
73
n
73
ALA
73
X
LEU
74
n
74
LEU
74
X
SER
75
n
75
SER
75
X
ASN
76
n
76
ASN
76
X
LYS
77
n
77
LYS
77
X
GLY
78
n
78
GLY
78
X
GLU
79
n
79
GLU
79
X
TYR
80
n
80
TYR
80
X
SER
81
n
81
SER
81
X
PHE
82
n
82
PHE
82
X
TYR
83
n
83
TYR
83
X
CYS
84
n
84
CYS
84
X
SER
85
n
85
SER
85
X
PRO
86
n
86
PRO
86
X
HIS
87
n
87
HIS
87
X
GLN
88
n
88
GLN
88
X
GLY
89
n
89
GLY
89
X
ALA
90
n
90
ALA
90
X
GLY
91
n
91
GLY
91
X
MET
92
n
92
MET
92
X
VAL
93
n
93
VAL
93
X
GLY
94
n
94
GLY
94
X
LYS
95
n
95
LYS
95
X
VAL
96
n
96
VAL
96
X
THR
97
n
97
THR
97
X
VAL
98
n
98
VAL
98
X
ASN
99
n
99
ASN
99
X
author_and_software_defined_assembly
PISA
1
monomeric
X
HIS
37
A
ND1
HIS
37
1_555
X
CU
100
B
CU
CU
1_555
X
CYS
84
A
SG
CYS
84
1_555
130.5
X
HIS
37
A
ND1
HIS
37
1_555
X
CU
100
B
CU
CU
1_555
X
HIS
87
A
ND1
HIS
87
1_555
100.2
X
CYS
84
A
SG
CYS
84
1_555
X
CU
100
B
CU
CU
1_555
X
HIS
87
A
ND1
HIS
87
1_555
118.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
X
O
VAL
15
A
O
VAL
15
X
N
LEU
4
A
N
LEU
4
X
N
LEU
5
A
N
LEU
5
X
O
LYS
30
A
O
LYS
30
X
N
PHE
29
A
N
PHE
29
X
O
PHE
70
A
O
PHE
70
X
N
ILE
21
A
N
ILE
21
X
O
THR
97
A
O
THR
97
X
O
VAL
98
A
O
VAL
98
X
N
GLY
78
A
N
GLY
78
X
O
TYR
83
A
O
TYR
83
X
N
VAL
40
A
N
VAL
40
1
X
X
O
O
HOH
HOH
1062
1203
1.36
1
X
X
O
O
HOH
HOH
1040
1213
1.52
1
X
X
O
O
HOH
HOH
1073
1103
1.75
1
X
X
O
O
HOH
HOH
1105
1212
1.94
1
X
X
O
O
HOH
HOH
1121
1131
2.04
1
X
X
NZ
O
LYS
HOH
54
1040
2.09
B
1
X
X
CE
O
LYS
HOH
54
1210
2.18
1
9.25
1.50
110.50
119.75
X
X
X
N
CA
CB
SER
SER
SER
48
48
48
B
B
B
N
1
16.09
2.20
113.40
129.49
X
X
X
CA
CB
CG
GLU
GLU
GLU
68
68
68
B
N
1
-7.55
1.20
123.30
115.75
X
X
X
OE1
CD
OE2
GLU
GLU
GLU
68
68
68
B
B
B
N
1
X
X
CD
OE1
GLU
GLU
59
59
0.091
0.011
1.252
1.343
B
B
N
1
X
X
CG
CD
GLU
GLU
68
68
0.097
0.015
1.515
1.612
B
B
N
1
X
X
O
O
HOH
HOH
1039
1207
1.24
1_555
4_445
1
X
X
O
O
HOH
HOH
1027
1203
1.75
1_555
3_745
1
X
X
O
O
HOH
HOH
1197
1212
2.01
1_555
2_654
1
X
X
O
O
HOH
HOH
1096
1210
2.06
1_555
3_755
1
X
ASN
32
-120.23
-58.72
1
X
SER
45
A
-140.76
37.40
10.265
0.06
0.00
0.00
-0.01
0.00
-0.05
0.980
0.971
0.14397
0.12109
0.12221
1.00
15.99
2096
40686
39319
5.1
96.64
0.555
0.014
RANDOM
1
ANISOTROPIC
THROUGHOUT
MOLECULAR REPLACEMENT
0.024
0.025
0.80
0.80
1.40
PDB ENTRY 1PLC
MAXIMUM LIKELIHOOD
MASK
1.00
15.99
213
952
1
0
738
0.027
0.022
910
2.663
1.975
1247
7.443
5.000
123
28.200
27.179
39
10.874
15.000
153
0.164
0.200
139
0.013
0.020
717
0.573
0.200
567
0.329
0.200
623
0.504
0.200
183
0.069
0.200
2
0.262
0.200
65
0.385
0.200
68
2.528
1.500
613
3.279
2.000
973
5.203
3.000
335
6.921
4.500
272
2.742
3.000
948
13.637
3.000
196
6.534
3.000
884
0.272
0.251
1.022
119
2042
2042
20
70.12
5.84
1.0
15.99
4DP9
42481
41152
2.0
0.045
1
19.2
3.5
96.9
0.260
1.0
1.02
3.5
2042
1
2.9
80.7
data collection
MAR345
phasing
MOLREP
refinement
REFMAC
5.2.0019
data reduction
DENZO
data scaling
SCALEPACK
The 1.00 Angstrom crystal structure of oxidized (CuII) poplar plastocyanin A at pH 6.0
1
N
N
2
N
N
3
N
N
X
ASP
51
A
ASP
51
HELX_P
X
ILE
55
A
ILE
55
5
1
5
X
SER
85
A
SER
85
HELX_P
X
GLN
88
A
GLN
88
5
2
4
metalc
1.943
X
HIS
37
A
ND1
HIS
37
1_555
X
CU
100
B
CU
CU
1_555
metalc
2.156
X
CYS
84
A
SG
CYS
84
1_555
X
CU
100
B
CU
CU
1_555
metalc
1.985
X
HIS
87
A
ND1
HIS
87
1_555
X
CU
100
B
CU
CU
1_555
ELECTRON TRANSPORT
membrane, thylakoid, transit peptide, plastocyanin-like domain, copper-binding, ELECTRON TRANSPORT
X
VAL
15
A
VAL
15
1
X
PRO
16
A
PRO
16
-3.80
X
PHE
35
A
PHE
35
1
X
PRO
36
A
PRO
36
1.61
PLAS1_POPNI
UNP
1
70
P00299
IDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNKGEY
SFYCSPHQGAGMVGKVTVN
70
168
4DP9
1
99
P00299
X
1
1
99
4
4
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
X
PHE
14
A
PHE
14
X
VAL
15
A
VAL
15
X
ASP
2
A
ASP
2
X
LEU
5
A
LEU
5
X
LYS
26
A
LYS
26
X
ASN
31
A
ASN
31
X
THR
69
A
THR
69
X
ALA
73
A
ALA
73
X
GLU
18
A
GLU
18
X
ILE
21
A
ILE
21
X
VAL
93
A
VAL
93
X
VAL
98
A
VAL
98
X
GLY
78
A
GLY
78
X
TYR
83
A
TYR
83
X
VAL
40
A
VAL
40
X
PHE
41
A
PHE
41
BINDING SITE FOR RESIDUE CU X 100
X
CU
100
Software
4
X
HIS
37
A
HIS
37
4
1_555
X
CYS
84
A
CYS
84
4
1_555
X
HIS
87
A
HIS
87
4
1_555
X
MET
92
A
MET
92
4
1_555
19
P 21 21 21