0.011290
0.000000
0.000000
0.000000
0.010708
0.000000
0.000000
0.000000
0.009440
0.00000
0.00000
0.00000
Gan, J.H.
Abdur, R.
Liu, H.H.
Sheng, J.
Caton-Willians, J.
Soares, A.S.
Huang, Z.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
88.573
93.387
105.928
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
O
N
90
N
P
N
91
N
O
N
92
N
O
N
93
N
O
N
94
N
C
N
95
R
C
N
96
N
O
N
97
S
C
N
98
N
O
N
99
N
C
N
100
R
C
Y
101
N
N
Y
102
N
C
Y
103
N
N
Y
104
N
C
Y
105
N
C
N
106
N
N
Y
107
N
N
Y
108
N
C
Y
109
N
N
Y
110
N
C
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
O
N
126
N
P
N
127
N
O
N
128
N
O
N
129
N
O
N
130
N
C
N
131
R
C
N
132
N
O
N
133
S
C
N
134
N
O
N
135
N
C
N
136
R
C
N
137
N
N
N
138
N
C
N
139
N
O
N
140
N
N
N
141
N
C
N
142
N
N
N
143
N
C
N
144
N
C
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
P
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
C
N
165
R
C
N
166
N
O
N
167
S
C
N
168
N
O
N
169
N
C
N
170
R
C
Y
171
N
N
Y
172
N
C
Y
173
N
N
Y
174
N
C
N
175
N
C
N
176
N
O
N
177
N
N
N
178
N
C
N
179
N
N
N
180
N
N
Y
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
O
N
197
N
P
N
198
N
O
N
199
N
O
N
200
N
O
N
201
N
C
N
202
R
C
N
203
N
O
N
204
S
C
N
205
N
O
N
206
N
C
N
207
R
C
N
208
N
N
N
209
N
C
N
210
N
O
N
211
N
N
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
N
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
O
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
N
C
N
273
N
C
N
274
N
O
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
O
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
Y
300
N
C
Y
301
N
N
Y
302
N
C
Y
303
N
C
Y
304
N
N
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
S
C
N
324
N
C
N
325
N
C
N
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
C
N
347
N
C
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
N
368
N
C
N
369
N
C
N
370
N
C
N
371
N
N
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
N
393
N
C
N
394
N
S
N
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
N
436
N
C
N
437
N
C
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
N
C
N
453
N
O
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
S
N
463
N
O
N
464
N
O
N
465
N
O
N
466
N
O
N
467
N
N
N
468
S
C
N
469
N
C
N
470
N
O
N
471
R
C
N
472
N
O
N
473
N
C
N
474
N
O
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
N
N
485
S
C
N
486
N
C
N
487
N
O
N
488
N
C
Y
489
N
C
Y
490
N
C
Y
491
N
C
Y
492
N
N
Y
493
N
C
Y
494
N
C
Y
495
N
C
Y
496
N
C
Y
497
N
C
N
498
N
O
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
N
N
512
S
C
N
513
N
C
N
514
N
O
N
515
N
C
Y
516
N
C
Y
517
N
C
Y
518
N
C
Y
519
N
C
Y
520
N
C
Y
521
N
C
N
522
N
O
N
523
N
O
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
N
N
536
S
C
N
537
N
C
N
538
N
O
N
539
N
C
N
540
N
C
N
541
N
C
N
542
N
O
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
sing
Y
303
N
doub
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
Y
410
N
doub
Y
411
N
sing
Y
412
N
sing
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
doub
N
417
N
sing
Y
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
doub
N
453
N
doub
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
doub
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
doub
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
Y
483
N
doub
Y
484
N
sing
Y
485
N
sing
N
486
N
sing
Y
487
N
doub
Y
488
N
sing
Y
489
N
sing
N
490
N
sing
Y
491
N
sing
Y
492
N
doub
N
493
N
sing
Y
494
N
doub
N
495
N
sing
Y
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
doub
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
Y
511
N
doub
Y
512
N
sing
Y
513
N
sing
N
514
N
sing
Y
515
N
doub
N
516
N
sing
Y
517
N
doub
N
518
N
sing
Y
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
doub
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
To be Published
0353
Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
10.2210/pdb4dsi/pdb
pdb_00004dsi
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Mirrors
CCD
2011-01-01
ADSC QUANTUM 315
Mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
8.2.2
ALS
1.0000
SYNCHROTRON
ALS BEAMLINE 8.2.2
66245.898
DNA polymerase
2.7.7.7
RESIDUES 298-876
A598D
1
man
polymer
3687.417
DNA
1
syn
polymer
2691.774
Se-dGTP
1
syn
polymer
92.094
GLYCEROL
5
syn
non-polymer
96.063
SULFATE ION
3
syn
non-polymer
347.221
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
1
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
242
nat
water
no
no
GSKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKR
AAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIW
ELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG
VILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGR
LSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED
EVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPD
ITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQA
VTLRVPLKVDYHYGSTWYDAK
GSKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKR
AAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIW
ELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG
VILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGR
LSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED
EVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPD
ITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQA
VTLRVPLKVDYHYGSTWYDAK
A
polypeptide(L)
no
no
(DA)(DT)(DC)(DC)(DG)(DA)(DG)(DT)(DC)(DA)(DG)(DG)
ATCCGAGTCAGG
B
polydeoxyribonucleotide
no
no
(DC)(DC)(DT)(DG)(DA)(DC)(DT)(DC)(DG)
CCTGACTCG
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
DPO1
1422
Geobacillus stearothermophilus
562
Escherichia coli
BL21 (DE3)
plasmid
pET28
1
3.02
59.22
VAPOR DIFFUSION, SITTING DROP
6.5
0.01 M cobalt chloride, 0.1 M MES (pH 6.5), 1.8 M ammonium sulfate, VAPOR DIFFUSION, SITTING DROP
-1.584
1
19
B
4
C
9
-1.124
B_DC4:DG9_C
1
-1.941
0.707
-0.318
-0.385
-3.590
1
19
B
5
C
8
-1.470
B_DG5:DC8_C
2
-10.375
0.026
-0.192
-0.471
0.609
1
20
B
6
C
7
1.110
B_DA6:DT7_C
3
-14.635
0.131
0.070
-0.384
-4.051
1
19
B
7
C
6
-0.884
B_DG7:DC6_C
4
-13.236
-0.216
-0.059
-0.149
0.064
1
20
B
8
C
5
-1.818
B_DT8:DA5_C
5
-5.385
-0.120
-0.192
-0.097
5.452
1
19
B
9
C
4
-0.993
B_DC9:DG4_C
6
7.681
0.247
-0.522
-0.149
1.317
1
20
B
10
C
3
-0.229
B_DA10:DT3_C
7
-9.757
0.136
0.183
-0.190
8.251
1
19
B
11
C
2
2.737
B_DG11:DC2_C
8
-1.285
-0.158
0.038
-0.065
-4.585
1
19
B
12
C
1
5.083
B_DG12:DC1_C
9
-16.941
-0.423
-0.501
-0.188
3.681
36.795
B
B
4
5
8.269
C
C
9
8
3.460
5.190
-0.932
1.208
BB_DC4DG5:DC8DG9_CC
1
-4.713
7.510
36.143
1.136
0.771
3.139
35.165
B
B
5
6
4.544
C
C
8
7
3.168
2.738
-0.022
-0.090
BB_DG5DA6:DT7DC8_CC
2
-3.566
5.917
34.885
-0.544
-0.479
3.166
30.976
B
B
6
7
16.420
C
C
7
6
3.397
8.658
-0.032
-0.371
BB_DA6DG7:DC6DT7_CC
3
0.291
-0.552
29.769
-2.405
0.118
3.198
31.180
B
B
7
8
1.218
C
C
6
5
3.193
0.654
0.296
-0.422
BB_DG7DT8:DA5DC6_CC
4
2.633
-4.904
31.064
-0.906
-0.060
3.313
33.417
B
B
8
9
14.103
C
C
5
4
3.347
8.016
0.992
-0.143
BB_DT8DC9:DG4DA5_CC
5
3.982
-7.005
32.229
-1.624
-1.041
3.288
43.355
B
B
9
10
14.402
C
C
4
3
3.515
10.426
-0.323
-0.419
BB_DC9DA10:DT3DG4_CC
6
-11.454
15.822
40.619
-1.660
-0.764
2.581
20.052
B
B
10
11
15.024
C
C
3
2
3.252
5.163
-0.329
-2.269
BB_DA10DG11:DC2DT3_CC
7
-2.168
6.310
19.262
-8.696
0.030
3.135
33.883
B
B
11
12
16.596
C
C
2
1
3.743
9.513
0.428
-1.777
BB_DG11DG12:DC1DC2_CC
8
5.108
-8.911
32.165
-4.704
0.154
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-03-27
1
1
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP
DNA polymerase I from Bacillus stearothermophilus wuth duplex DNA, dGTP and Calcium
DNA polymerase I from Bacillus stearothermophilus wuth duplex DNA, PPi and Calcium
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA and Calcium
RCSB
Y
RCSB
2012-02-19
REL
REL
GOL
GLYCEROL
SO4
SULFATE ION
DG
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
CA
CALCIUM ION
HOH
water
Synthesized DNA
sample
Se-modified dGTP
sample
3HT3
PDB 3HT3
PDB
experimental model
GOL
401
4
GOL
GOL
901
A
GOL
402
4
GOL
GOL
902
A
GOL
403
4
GOL
GOL
903
A
GOL
404
4
GOL
GOL
904
A
GOL
405
4
GOL
GOL
905
A
SO4
1
5
SO4
SO4
906
A
SO4
2
5
SO4
SO4
907
A
SO4
3
5
SO4
SO4
908
A
DG
1
6
DG
DG
101
C
CA
3
7
CA
CA
102
C
HOH
7
8
HOH
HOH
1001
A
HOH
8
8
HOH
HOH
1002
A
HOH
9
8
HOH
HOH
1003
A
HOH
10
8
HOH
HOH
1004
A
HOH
11
8
HOH
HOH
1005
A
HOH
12
8
HOH
HOH
1006
A
HOH
13
8
HOH
HOH
1007
A
HOH
14
8
HOH
HOH
1008
A
HOH
15
8
HOH
HOH
1009
A
HOH
16
8
HOH
HOH
1010
A
HOH
17
8
HOH
HOH
1011
A
HOH
18
8
HOH
HOH
1012
A
HOH
19
8
HOH
HOH
1013
A
HOH
20
8
HOH
HOH
1014
A
HOH
21
8
HOH
HOH
1015
A
HOH
22
8
HOH
HOH
1016
A
HOH
23
8
HOH
HOH
1017
A
HOH
24
8
HOH
HOH
1018
A
HOH
25
8
HOH
HOH
1019
A
HOH
26
8
HOH
HOH
1020
A
HOH
27
8
HOH
HOH
1021
A
HOH
28
8
HOH
HOH
1022
A
HOH
29
8
HOH
HOH
1023
A
HOH
31
8
HOH
HOH
1024
A
HOH
32
8
HOH
HOH
1025
A
HOH
33
8
HOH
HOH
1026
A
HOH
34
8
HOH
HOH
1027
A
HOH
35
8
HOH
HOH
1028
A
HOH
36
8
HOH
HOH
1029
A
HOH
37
8
HOH
HOH
1030
A
HOH
38
8
HOH
HOH
1031
A
HOH
39
8
HOH
HOH
1032
A
HOH
40
8
HOH
HOH
1033
A
HOH
41
8
HOH
HOH
1034
A
HOH
42
8
HOH
HOH
1035
A
HOH
43
8
HOH
HOH
1036
A
HOH
44
8
HOH
HOH
1037
A
HOH
45
8
HOH
HOH
1038
A
HOH
46
8
HOH
HOH
1039
A
HOH
48
8
HOH
HOH
1040
A
HOH
49
8
HOH
HOH
1041
A
HOH
50
8
HOH
HOH
1042
A
HOH
51
8
HOH
HOH
1043
A
HOH
52
8
HOH
HOH
1044
A
HOH
53
8
HOH
HOH
1045
A
HOH
54
8
HOH
HOH
1046
A
HOH
56
8
HOH
HOH
1047
A
HOH
57
8
HOH
HOH
1048
A
HOH
58
8
HOH
HOH
1049
A
HOH
59
8
HOH
HOH
1050
A
HOH
60
8
HOH
HOH
1051
A
HOH
61
8
HOH
HOH
1052
A
HOH
62
8
HOH
HOH
1053
A
HOH
63
8
HOH
HOH
1054
A
HOH
64
8
HOH
HOH
1055
A
HOH
65
8
HOH
HOH
1056
A
HOH
67
8
HOH
HOH
1057
A
HOH
69
8
HOH
HOH
1058
A
HOH
70
8
HOH
HOH
1059
A
HOH
71
8
HOH
HOH
1060
A
HOH
72
8
HOH
HOH
1061
A
HOH
74
8
HOH
HOH
1062
A
HOH
75
8
HOH
HOH
1063
A
HOH
76
8
HOH
HOH
1064
A
HOH
77
8
HOH
HOH
1065
A
HOH
78
8
HOH
HOH
1066
A
HOH
79
8
HOH
HOH
1067
A
HOH
80
8
HOH
HOH
1068
A
HOH
81
8
HOH
HOH
1069
A
HOH
82
8
HOH
HOH
1070
A
HOH
83
8
HOH
HOH
1071
A
HOH
84
8
HOH
HOH
1072
A
HOH
85
8
HOH
HOH
1073
A
HOH
86
8
HOH
HOH
1074
A
HOH
87
8
HOH
HOH
1075
A
HOH
88
8
HOH
HOH
1076
A
HOH
89
8
HOH
HOH
1077
A
HOH
90
8
HOH
HOH
1078
A
HOH
91
8
HOH
HOH
1079
A
HOH
92
8
HOH
HOH
1080
A
HOH
93
8
HOH
HOH
1081
A
HOH
94
8
HOH
HOH
1082
A
HOH
95
8
HOH
HOH
1083
A
HOH
96
8
HOH
HOH
1084
A
HOH
97
8
HOH
HOH
1085
A
HOH
98
8
HOH
HOH
1086
A
HOH
99
8
HOH
HOH
1087
A
HOH
100
8
HOH
HOH
1088
A
HOH
103
8
HOH
HOH
1089
A
HOH
104
8
HOH
HOH
1090
A
HOH
105
8
HOH
HOH
1091
A
HOH
107
8
HOH
HOH
1092
A
HOH
112
8
HOH
HOH
1093
A
HOH
115
8
HOH
HOH
1094
A
HOH
116
8
HOH
HOH
1095
A
HOH
117
8
HOH
HOH
1096
A
HOH
118
8
HOH
HOH
1097
A
HOH
119
8
HOH
HOH
1098
A
HOH
120
8
HOH
HOH
1099
A
HOH
121
8
HOH
HOH
1100
A
HOH
122
8
HOH
HOH
1101
A
HOH
123
8
HOH
HOH
1102
A
HOH
124
8
HOH
HOH
1103
A
HOH
127
8
HOH
HOH
1104
A
HOH
129
8
HOH
HOH
1105
A
HOH
130
8
HOH
HOH
1106
A
HOH
131
8
HOH
HOH
1107
A
HOH
132
8
HOH
HOH
1108
A
HOH
133
8
HOH
HOH
1109
A
HOH
134
8
HOH
HOH
1110
A
HOH
135
8
HOH
HOH
1111
A
HOH
136
8
HOH
HOH
1112
A
HOH
137
8
HOH
HOH
1113
A
HOH
138
8
HOH
HOH
1114
A
HOH
139
8
HOH
HOH
1115
A
HOH
140
8
HOH
HOH
1116
A
HOH
141
8
HOH
HOH
1117
A
HOH
142
8
HOH
HOH
1118
A
HOH
143
8
HOH
HOH
1119
A
HOH
144
8
HOH
HOH
1120
A
HOH
146
8
HOH
HOH
1121
A
HOH
147
8
HOH
HOH
1122
A
HOH
148
8
HOH
HOH
1123
A
HOH
149
8
HOH
HOH
1124
A
HOH
150
8
HOH
HOH
1125
A
HOH
151
8
HOH
HOH
1126
A
HOH
153
8
HOH
HOH
1127
A
HOH
154
8
HOH
HOH
1128
A
HOH
155
8
HOH
HOH
1129
A
HOH
156
8
HOH
HOH
1130
A
HOH
157
8
HOH
HOH
1131
A
HOH
158
8
HOH
HOH
1132
A
HOH
159
8
HOH
HOH
1133
A
HOH
160
8
HOH
HOH
1134
A
HOH
161
8
HOH
HOH
1135
A
HOH
162
8
HOH
HOH
1136
A
HOH
163
8
HOH
HOH
1137
A
HOH
164
8
HOH
HOH
1138
A
HOH
165
8
HOH
HOH
1139
A
HOH
166
8
HOH
HOH
1140
A
HOH
167
8
HOH
HOH
1141
A
HOH
169
8
HOH
HOH
1142
A
HOH
170
8
HOH
HOH
1143
A
HOH
171
8
HOH
HOH
1144
A
HOH
172
8
HOH
HOH
1145
A
HOH
173
8
HOH
HOH
1146
A
HOH
174
8
HOH
HOH
1147
A
HOH
175
8
HOH
HOH
1148
A
HOH
176
8
HOH
HOH
1149
A
HOH
177
8
HOH
HOH
1150
A
HOH
178
8
HOH
HOH
1151
A
HOH
179
8
HOH
HOH
1152
A
HOH
180
8
HOH
HOH
1153
A
HOH
181
8
HOH
HOH
1154
A
HOH
182
8
HOH
HOH
1155
A
HOH
183
8
HOH
HOH
1156
A
HOH
184
8
HOH
HOH
1157
A
HOH
186
8
HOH
HOH
1158
A
HOH
188
8
HOH
HOH
1159
A
HOH
189
8
HOH
HOH
1160
A
HOH
190
8
HOH
HOH
1161
A
HOH
191
8
HOH
HOH
1162
A
HOH
193
8
HOH
HOH
1163
A
HOH
194
8
HOH
HOH
1164
A
HOH
196
8
HOH
HOH
1165
A
HOH
197
8
HOH
HOH
1166
A
HOH
199
8
HOH
HOH
1167
A
HOH
200
8
HOH
HOH
1168
A
HOH
201
8
HOH
HOH
1169
A
HOH
203
8
HOH
HOH
1170
A
HOH
204
8
HOH
HOH
1171
A
HOH
205
8
HOH
HOH
1172
A
HOH
206
8
HOH
HOH
1173
A
HOH
210
8
HOH
HOH
1174
A
HOH
214
8
HOH
HOH
1175
A
HOH
215
8
HOH
HOH
1176
A
HOH
216
8
HOH
HOH
1177
A
HOH
217
8
HOH
HOH
1178
A
HOH
220
8
HOH
HOH
1179
A
HOH
222
8
HOH
HOH
1180
A
HOH
227
8
HOH
HOH
1181
A
HOH
229
8
HOH
HOH
1182
A
HOH
230
8
HOH
HOH
1183
A
HOH
231
8
HOH
HOH
1184
A
HOH
232
8
HOH
HOH
1185
A
HOH
233
8
HOH
HOH
1186
A
HOH
234
8
HOH
HOH
1187
A
HOH
235
8
HOH
HOH
1188
A
HOH
236
8
HOH
HOH
1189
A
HOH
238
8
HOH
HOH
1190
A
HOH
243
8
HOH
HOH
1191
A
HOH
245
8
HOH
HOH
1192
A
HOH
246
8
HOH
HOH
1193
A
HOH
249
8
HOH
HOH
1194
A
HOH
251
8
HOH
HOH
1195
A
HOH
255
8
HOH
HOH
1196
A
HOH
256
8
HOH
HOH
1197
A
HOH
260
8
HOH
HOH
1198
A
HOH
265
8
HOH
HOH
1199
A
HOH
268
8
HOH
HOH
1200
A
HOH
269
8
HOH
HOH
1201
A
HOH
270
8
HOH
HOH
1202
A
HOH
272
8
HOH
HOH
1203
A
HOH
273
8
HOH
HOH
1204
A
HOH
274
8
HOH
HOH
1205
A
HOH
275
8
HOH
HOH
1206
A
HOH
276
8
HOH
HOH
1207
A
HOH
279
8
HOH
HOH
1208
A
HOH
280
8
HOH
HOH
1209
A
HOH
281
8
HOH
HOH
1210
A
HOH
282
8
HOH
HOH
1211
A
HOH
283
8
HOH
HOH
1212
A
HOH
284
8
HOH
HOH
1213
A
HOH
225
8
HOH
HOH
1214
A
HOH
30
8
HOH
HOH
101
B
HOH
47
8
HOH
HOH
102
B
HOH
114
8
HOH
HOH
103
B
HOH
168
8
HOH
HOH
104
B
HOH
185
8
HOH
HOH
105
B
HOH
202
8
HOH
HOH
106
B
HOH
224
8
HOH
HOH
107
B
HOH
247
8
HOH
HOH
108
B
HOH
55
8
HOH
HOH
201
C
HOH
66
8
HOH
HOH
202
C
HOH
68
8
HOH
HOH
203
C
HOH
73
8
HOH
HOH
204
C
HOH
101
8
HOH
HOH
205
C
HOH
102
8
HOH
HOH
206
C
HOH
111
8
HOH
HOH
207
C
HOH
126
8
HOH
HOH
208
C
HOH
145
8
HOH
HOH
209
C
HOH
192
8
HOH
HOH
210
C
HOH
195
8
HOH
HOH
211
C
HOH
208
8
HOH
HOH
212
C
HOH
213
8
HOH
HOH
213
C
HOH
228
8
HOH
HOH
214
C
HOH
239
8
HOH
HOH
215
C
HOH
244
8
HOH
HOH
216
C
HOH
259
8
HOH
HOH
217
C
HOH
264
8
HOH
HOH
218
C
HOH
271
8
HOH
HOH
219
C
HOH
278
8
HOH
HOH
220
C
GLY
296
n
1
GLY
296
A
SER
297
n
2
SER
297
A
LYS
298
n
3
LYS
298
A
MET
299
n
4
MET
299
A
ALA
300
n
5
ALA
300
A
PHE
301
n
6
PHE
301
A
THR
302
n
7
THR
302
A
LEU
303
n
8
LEU
303
A
ALA
304
n
9
ALA
304
A
ASP
305
n
10
ASP
305
A
ARG
306
n
11
ARG
306
A
VAL
307
n
12
VAL
307
A
THR
308
n
13
THR
308
A
GLU
309
n
14
GLU
309
A
GLU
310
n
15
GLU
310
A
MET
311
n
16
MET
311
A
LEU
312
n
17
LEU
312
A
ALA
313
n
18
ALA
313
A
ASP
314
n
19
ASP
314
A
LYS
315
n
20
LYS
315
A
ALA
316
n
21
ALA
316
A
ALA
317
n
22
ALA
317
A
LEU
318
n
23
LEU
318
A
VAL
319
n
24
VAL
319
A
VAL
320
n
25
VAL
320
A
GLU
321
n
26
GLU
321
A
VAL
322
n
27
VAL
322
A
VAL
323
n
28
VAL
323
A
GLU
324
n
29
GLU
324
A
GLU
325
n
30
GLU
325
A
ASN
326
n
31
ASN
326
A
TYR
327
n
32
TYR
327
A
HIS
328
n
33
HIS
328
A
ASP
329
n
34
ASP
329
A
ALA
330
n
35
ALA
330
A
PRO
331
n
36
PRO
331
A
ILE
332
n
37
ILE
332
A
VAL
333
n
38
VAL
333
A
GLY
334
n
39
GLY
334
A
ILE
335
n
40
ILE
335
A
ALA
336
n
41
ALA
336
A
VAL
337
n
42
VAL
337
A
VAL
338
n
43
VAL
338
A
ASN
339
n
44
ASN
339
A
GLU
340
n
45
GLU
340
A
HIS
341
n
46
HIS
341
A
GLY
342
n
47
GLY
342
A
ARG
343
n
48
ARG
343
A
PHE
344
n
49
PHE
344
A
PHE
345
n
50
PHE
345
A
LEU
346
n
51
LEU
346
A
ARG
347
n
52
ARG
347
A
PRO
348
n
53
PRO
348
A
GLU
349
n
54
GLU
349
A
THR
350
n
55
THR
350
A
ALA
351
n
56
ALA
351
A
LEU
352
n
57
LEU
352
A
ALA
353
n
58
ALA
353
A
ASP
354
n
59
ASP
354
A
PRO
355
n
60
PRO
355
A
GLN
356
n
61
GLN
356
A
PHE
357
n
62
PHE
357
A
VAL
358
n
63
VAL
358
A
ALA
359
n
64
ALA
359
A
TRP
360
n
65
TRP
360
A
LEU
361
n
66
LEU
361
A
GLY
362
n
67
GLY
362
A
ASP
363
n
68
ASP
363
A
GLU
364
n
69
GLU
364
A
THR
365
n
70
THR
365
A
LYS
366
n
71
LYS
366
A
LYS
367
n
72
LYS
367
A
LYS
368
n
73
LYS
368
A
SER
369
n
74
SER
369
A
MET
370
n
75
MET
370
A
PHE
371
n
76
PHE
371
A
ASP
372
n
77
ASP
372
A
SER
373
n
78
SER
373
A
LYS
374
n
79
LYS
374
A
ARG
375
n
80
ARG
375
A
ALA
376
n
81
ALA
376
A
ALA
377
n
82
ALA
377
A
VAL
378
n
83
VAL
378
A
ALA
379
n
84
ALA
379
A
LEU
380
n
85
LEU
380
A
LYS
381
n
86
LYS
381
A
TRP
382
n
87
TRP
382
A
LYS
383
n
88
LYS
383
A
GLY
384
n
89
GLY
384
A
ILE
385
n
90
ILE
385
A
GLU
386
n
91
GLU
386
A
LEU
387
n
92
LEU
387
A
CYS
388
n
93
CYS
388
A
GLY
389
n
94
GLY
389
A
VAL
390
n
95
VAL
390
A
SER
391
n
96
SER
391
A
PHE
392
n
97
PHE
392
A
ASP
393
n
98
ASP
393
A
LEU
394
n
99
LEU
394
A
LEU
395
n
100
LEU
395
A
LEU
396
n
101
LEU
396
A
ALA
397
n
102
ALA
397
A
ALA
398
n
103
ALA
398
A
TYR
399
n
104
TYR
399
A
LEU
400
n
105
LEU
400
A
LEU
401
n
106
LEU
401
A
ASP
402
n
107
ASP
402
A
PRO
403
n
108
PRO
403
A
ALA
404
n
109
ALA
404
A
GLN
405
n
110
GLN
405
A
GLY
406
n
111
GLY
406
A
VAL
407
n
112
VAL
407
A
ASP
408
n
113
ASP
408
A
ASP
409
n
114
ASP
409
A
VAL
410
n
115
VAL
410
A
ALA
411
n
116
ALA
411
A
ALA
412
n
117
ALA
412
A
ALA
413
n
118
ALA
413
A
ALA
414
n
119
ALA
414
A
LYS
415
n
120
LYS
415
A
MET
416
n
121
MET
416
A
LYS
417
n
122
LYS
417
A
GLN
418
n
123
GLN
418
A
TYR
419
n
124
TYR
419
A
GLU
420
n
125
GLU
420
A
ALA
421
n
126
ALA
421
A
VAL
422
n
127
VAL
422
A
ARG
423
n
128
ARG
423
A
PRO
424
n
129
PRO
424
A
ASP
425
n
130
ASP
425
A
GLU
426
n
131
GLU
426
A
ALA
427
n
132
ALA
427
A
VAL
428
n
133
VAL
428
A
TYR
429
n
134
TYR
429
A
GLY
430
n
135
GLY
430
A
LYS
431
n
136
LYS
431
A
GLY
432
n
137
GLY
432
A
ALA
433
n
138
ALA
433
A
LYS
434
n
139
LYS
434
A
ARG
435
n
140
ARG
435
A
ALA
436
n
141
ALA
436
A
VAL
437
n
142
VAL
437
A
PRO
438
n
143
PRO
438
A
ASP
439
n
144
ASP
439
A
GLU
440
n
145
GLU
440
A
PRO
441
n
146
PRO
441
A
VAL
442
n
147
VAL
442
A
LEU
443
n
148
LEU
443
A
ALA
444
n
149
ALA
444
A
GLU
445
n
150
GLU
445
A
HIS
446
n
151
HIS
446
A
LEU
447
n
152
LEU
447
A
VAL
448
n
153
VAL
448
A
ARG
449
n
154
ARG
449
A
LYS
450
n
155
LYS
450
A
ALA
451
n
156
ALA
451
A
ALA
452
n
157
ALA
452
A
ALA
453
n
158
ALA
453
A
ILE
454
n
159
ILE
454
A
TRP
455
n
160
TRP
455
A
GLU
456
n
161
GLU
456
A
LEU
457
n
162
LEU
457
A
GLU
458
n
163
GLU
458
A
ARG
459
n
164
ARG
459
A
PRO
460
n
165
PRO
460
A
PHE
461
n
166
PHE
461
A
LEU
462
n
167
LEU
462
A
ASP
463
n
168
ASP
463
A
GLU
464
n
169
GLU
464
A
LEU
465
n
170
LEU
465
A
ARG
466
n
171
ARG
466
A
ARG
467
n
172
ARG
467
A
ASN
468
n
173
ASN
468
A
GLU
469
n
174
GLU
469
A
GLN
470
n
175
GLN
470
A
ASP
471
n
176
ASP
471
A
ARG
472
n
177
ARG
472
A
LEU
473
n
178
LEU
473
A
LEU
474
n
179
LEU
474
A
VAL
475
n
180
VAL
475
A
GLU
476
n
181
GLU
476
A
LEU
477
n
182
LEU
477
A
GLU
478
n
183
GLU
478
A
GLN
479
n
184
GLN
479
A
PRO
480
n
185
PRO
480
A
LEU
481
n
186
LEU
481
A
SER
482
n
187
SER
482
A
SER
483
n
188
SER
483
A
ILE
484
n
189
ILE
484
A
LEU
485
n
190
LEU
485
A
ALA
486
n
191
ALA
486
A
GLU
487
n
192
GLU
487
A
MET
488
n
193
MET
488
A
GLU
489
n
194
GLU
489
A
PHE
490
n
195
PHE
490
A
ALA
491
n
196
ALA
491
A
GLY
492
n
197
GLY
492
A
VAL
493
n
198
VAL
493
A
LYS
494
n
199
LYS
494
A
VAL
495
n
200
VAL
495
A
ASP
496
n
201
ASP
496
A
THR
497
n
202
THR
497
A
LYS
498
n
203
LYS
498
A
ARG
499
n
204
ARG
499
A
LEU
500
n
205
LEU
500
A
GLU
501
n
206
GLU
501
A
GLN
502
n
207
GLN
502
A
MET
503
n
208
MET
503
A
GLY
504
n
209
GLY
504
A
LYS
505
n
210
LYS
505
A
GLU
506
n
211
GLU
506
A
LEU
507
n
212
LEU
507
A
ALA
508
n
213
ALA
508
A
GLU
509
n
214
GLU
509
A
GLN
510
n
215
GLN
510
A
LEU
511
n
216
LEU
511
A
GLY
512
n
217
GLY
512
A
THR
513
n
218
THR
513
A
VAL
514
n
219
VAL
514
A
GLU
515
n
220
GLU
515
A
GLN
516
n
221
GLN
516
A
ARG
517
n
222
ARG
517
A
ILE
518
n
223
ILE
518
A
TYR
519
n
224
TYR
519
A
GLU
520
n
225
GLU
520
A
LEU
521
n
226
LEU
521
A
ALA
522
n
227
ALA
522
A
GLY
523
n
228
GLY
523
A
GLN
524
n
229
GLN
524
A
GLU
525
n
230
GLU
525
A
PHE
526
n
231
PHE
526
A
ASN
527
n
232
ASN
527
A
ILE
528
n
233
ILE
528
A
ASN
529
n
234
ASN
529
A
SER
530
n
235
SER
530
A
PRO
531
n
236
PRO
531
A
LYS
532
n
237
LYS
532
A
GLN
533
n
238
GLN
533
A
LEU
534
n
239
LEU
534
A
GLY
535
n
240
GLY
535
A
VAL
536
n
241
VAL
536
A
ILE
537
n
242
ILE
537
A
LEU
538
n
243
LEU
538
A
PHE
539
n
244
PHE
539
A
GLU
540
n
245
GLU
540
A
LYS
541
n
246
LYS
541
A
LEU
542
n
247
LEU
542
A
GLN
543
n
248
GLN
543
A
LEU
544
n
249
LEU
544
A
PRO
545
n
250
PRO
545
A
VAL
546
n
251
VAL
546
A
LEU
547
n
252
LEU
547
A
LYS
548
n
253
LYS
548
A
LYS
549
n
254
LYS
549
A
THR
550
n
255
THR
550
A
LYS
551
n
256
LYS
551
A
THR
552
n
257
THR
552
A
GLY
553
n
258
GLY
553
A
TYR
554
n
259
TYR
554
A
SER
555
n
260
SER
555
A
THR
556
n
261
THR
556
A
SER
557
n
262
SER
557
A
ALA
558
n
263
ALA
558
A
ASP
559
n
264
ASP
559
A
VAL
560
n
265
VAL
560
A
LEU
561
n
266
LEU
561
A
GLU
562
n
267
GLU
562
A
LYS
563
n
268
LYS
563
A
LEU
564
n
269
LEU
564
A
ALA
565
n
270
ALA
565
A
PRO
566
n
271
PRO
566
A
TYR
567
n
272
TYR
567
A
HIS
568
n
273
HIS
568
A
GLU
569
n
274
GLU
569
A
ILE
570
n
275
ILE
570
A
VAL
571
n
276
VAL
571
A
GLU
572
n
277
GLU
572
A
ASN
573
n
278
ASN
573
A
ILE
574
n
279
ILE
574
A
LEU
575
n
280
LEU
575
A
HIS
576
n
281
HIS
576
A
TYR
577
n
282
TYR
577
A
ARG
578
n
283
ARG
578
A
GLN
579
n
284
GLN
579
A
LEU
580
n
285
LEU
580
A
GLY
581
n
286
GLY
581
A
LYS
582
n
287
LYS
582
A
LEU
583
n
288
LEU
583
A
GLN
584
n
289
GLN
584
A
SER
585
n
290
SER
585
A
THR
586
n
291
THR
586
A
TYR
587
n
292
TYR
587
A
ILE
588
n
293
ILE
588
A
GLU
589
n
294
GLU
589
A
GLY
590
n
295
GLY
590
A
LEU
591
n
296
LEU
591
A
LEU
592
n
297
LEU
592
A
LYS
593
n
298
LYS
593
A
VAL
594
n
299
VAL
594
A
VAL
595
n
300
VAL
595
A
ARG
596
n
301
ARG
596
A
PRO
597
n
302
PRO
597
A
ASP
598
n
303
ASP
598
A
THR
599
n
304
THR
599
A
LYS
600
n
305
LYS
600
A
LYS
601
n
306
LYS
601
A
VAL
602
n
307
VAL
602
A
HIS
603
n
308
HIS
603
A
THR
604
n
309
THR
604
A
ILE
605
n
310
ILE
605
A
PHE
606
n
311
PHE
606
A
ASN
607
n
312
ASN
607
A
GLN
608
n
313
GLN
608
A
ALA
609
n
314
ALA
609
A
LEU
610
n
315
LEU
610
A
THR
611
n
316
THR
611
A
GLN
612
n
317
GLN
612
A
THR
613
n
318
THR
613
A
GLY
614
n
319
GLY
614
A
ARG
615
n
320
ARG
615
A
LEU
616
n
321
LEU
616
A
SER
617
n
322
SER
617
A
SER
618
n
323
SER
618
A
THR
619
n
324
THR
619
A
GLU
620
n
325
GLU
620
A
PRO
621
n
326
PRO
621
A
ASN
622
n
327
ASN
622
A
LEU
623
n
328
LEU
623
A
GLN
624
n
329
GLN
624
A
ASN
625
n
330
ASN
625
A
ILE
626
n
331
ILE
626
A
PRO
627
n
332
PRO
627
A
ILE
628
n
333
ILE
628
A
ARG
629
n
334
ARG
629
A
LEU
630
n
335
LEU
630
A
GLU
631
n
336
GLU
631
A
GLU
632
n
337
GLU
632
A
GLY
633
n
338
GLY
633
A
ARG
634
n
339
ARG
634
A
LYS
635
n
340
LYS
635
A
ILE
636
n
341
ILE
636
A
ARG
637
n
342
ARG
637
A
GLN
638
n
343
GLN
638
A
ALA
639
n
344
ALA
639
A
PHE
640
n
345
PHE
640
A
VAL
641
n
346
VAL
641
A
PRO
642
n
347
PRO
642
A
SER
643
n
348
SER
643
A
GLU
644
n
349
GLU
644
A
SER
645
n
350
SER
645
A
ASP
646
n
351
ASP
646
A
TRP
647
n
352
TRP
647
A
LEU
648
n
353
LEU
648
A
ILE
649
n
354
ILE
649
A
PHE
650
n
355
PHE
650
A
ALA
651
n
356
ALA
651
A
ALA
652
n
357
ALA
652
A
ASP
653
n
358
ASP
653
A
TYR
654
n
359
TYR
654
A
SER
655
n
360
SER
655
A
GLN
656
n
361
GLN
656
A
ILE
657
n
362
ILE
657
A
GLU
658
n
363
GLU
658
A
LEU
659
n
364
LEU
659
A
ARG
660
n
365
ARG
660
A
VAL
661
n
366
VAL
661
A
LEU
662
n
367
LEU
662
A
ALA
663
n
368
ALA
663
A
HIS
664
n
369
HIS
664
A
ILE
665
n
370
ILE
665
A
ALA
666
n
371
ALA
666
A
GLU
667
n
372
GLU
667
A
ASP
668
n
373
ASP
668
A
ASP
669
n
374
ASP
669
A
ASN
670
n
375
ASN
670
A
LEU
671
n
376
LEU
671
A
MET
672
n
377
MET
672
A
GLU
673
n
378
GLU
673
A
ALA
674
n
379
ALA
674
A
PHE
675
n
380
PHE
675
A
ARG
676
n
381
ARG
676
A
ARG
677
n
382
ARG
677
A
ASP
678
n
383
ASP
678
A
LEU
679
n
384
LEU
679
A
ASP
680
n
385
ASP
680
A
ILE
681
n
386
ILE
681
A
HIS
682
n
387
HIS
682
A
THR
683
n
388
THR
683
A
LYS
684
n
389
LYS
684
A
THR
685
n
390
THR
685
A
ALA
686
n
391
ALA
686
A
MET
687
n
392
MET
687
A
ASP
688
n
393
ASP
688
A
ILE
689
n
394
ILE
689
A
PHE
690
n
395
PHE
690
A
GLN
691
n
396
GLN
691
A
VAL
692
n
397
VAL
692
A
SER
693
n
398
SER
693
A
GLU
694
n
399
GLU
694
A
ASP
695
n
400
ASP
695
A
GLU
696
n
401
GLU
696
A
VAL
697
n
402
VAL
697
A
THR
698
n
403
THR
698
A
PRO
699
n
404
PRO
699
A
ASN
700
n
405
ASN
700
A
MET
701
n
406
MET
701
A
ARG
702
n
407
ARG
702
A
ARG
703
n
408
ARG
703
A
GLN
704
n
409
GLN
704
A
ALA
705
n
410
ALA
705
A
LYS
706
n
411
LYS
706
A
ALA
707
n
412
ALA
707
A
VAL
708
n
413
VAL
708
A
ASN
709
n
414
ASN
709
A
PHE
710
n
415
PHE
710
A
GLY
711
n
416
GLY
711
A
ILE
712
n
417
ILE
712
A
VAL
713
n
418
VAL
713
A
TYR
714
n
419
TYR
714
A
GLY
715
n
420
GLY
715
A
ILE
716
n
421
ILE
716
A
SER
717
n
422
SER
717
A
ASP
718
n
423
ASP
718
A
TYR
719
n
424
TYR
719
A
GLY
720
n
425
GLY
720
A
LEU
721
n
426
LEU
721
A
ALA
722
n
427
ALA
722
A
GLN
723
n
428
GLN
723
A
ASN
724
n
429
ASN
724
A
LEU
725
n
430
LEU
725
A
ASN
726
n
431
ASN
726
A
ILE
727
n
432
ILE
727
A
SER
728
n
433
SER
728
A
ARG
729
n
434
ARG
729
A
LYS
730
n
435
LYS
730
A
GLU
731
n
436
GLU
731
A
ALA
732
n
437
ALA
732
A
ALA
733
n
438
ALA
733
A
GLU
734
n
439
GLU
734
A
PHE
735
n
440
PHE
735
A
ILE
736
n
441
ILE
736
A
GLU
737
n
442
GLU
737
A
ARG
738
n
443
ARG
738
A
TYR
739
n
444
TYR
739
A
PHE
740
n
445
PHE
740
A
GLU
741
n
446
GLU
741
A
SER
742
n
447
SER
742
A
PHE
743
n
448
PHE
743
A
PRO
744
n
449
PRO
744
A
GLY
745
n
450
GLY
745
A
VAL
746
n
451
VAL
746
A
LYS
747
n
452
LYS
747
A
ARG
748
n
453
ARG
748
A
TYR
749
n
454
TYR
749
A
MET
750
n
455
MET
750
A
GLU
751
n
456
GLU
751
A
ASN
752
n
457
ASN
752
A
ILE
753
n
458
ILE
753
A
VAL
754
n
459
VAL
754
A
GLN
755
n
460
GLN
755
A
GLU
756
n
461
GLU
756
A
ALA
757
n
462
ALA
757
A
LYS
758
n
463
LYS
758
A
GLN
759
n
464
GLN
759
A
LYS
760
n
465
LYS
760
A
GLY
761
n
466
GLY
761
A
TYR
762
n
467
TYR
762
A
VAL
763
n
468
VAL
763
A
THR
764
n
469
THR
764
A
THR
765
n
470
THR
765
A
LEU
766
n
471
LEU
766
A
LEU
767
n
472
LEU
767
A
HIS
768
n
473
HIS
768
A
ARG
769
n
474
ARG
769
A
ARG
770
n
475
ARG
770
A
ARG
771
n
476
ARG
771
A
TYR
772
n
477
TYR
772
A
LEU
773
n
478
LEU
773
A
PRO
774
n
479
PRO
774
A
ASP
775
n
480
ASP
775
A
ILE
776
n
481
ILE
776
A
THR
777
n
482
THR
777
A
SER
778
n
483
SER
778
A
ARG
779
n
484
ARG
779
A
ASN
780
n
485
ASN
780
A
PHE
781
n
486
PHE
781
A
ASN
782
n
487
ASN
782
A
VAL
783
n
488
VAL
783
A
ARG
784
n
489
ARG
784
A
SER
785
n
490
SER
785
A
PHE
786
n
491
PHE
786
A
ALA
787
n
492
ALA
787
A
GLU
788
n
493
GLU
788
A
ARG
789
n
494
ARG
789
A
MET
790
n
495
MET
790
A
ALA
791
n
496
ALA
791
A
MET
792
n
497
MET
792
A
ASN
793
n
498
ASN
793
A
THR
794
n
499
THR
794
A
PRO
795
n
500
PRO
795
A
ILE
796
n
501
ILE
796
A
GLN
797
n
502
GLN
797
A
GLY
798
n
503
GLY
798
A
SER
799
n
504
SER
799
A
ALA
800
n
505
ALA
800
A
ALA
801
n
506
ALA
801
A
ASP
802
n
507
ASP
802
A
ILE
803
n
508
ILE
803
A
ILE
804
n
509
ILE
804
A
LYS
805
n
510
LYS
805
A
LYS
806
n
511
LYS
806
A
ALA
807
n
512
ALA
807
A
MET
808
n
513
MET
808
A
ILE
809
n
514
ILE
809
A
ASP
810
n
515
ASP
810
A
LEU
811
n
516
LEU
811
A
ASN
812
n
517
ASN
812
A
ALA
813
n
518
ALA
813
A
ARG
814
n
519
ARG
814
A
LEU
815
n
520
LEU
815
A
LYS
816
n
521
LYS
816
A
GLU
817
n
522
GLU
817
A
GLU
818
n
523
GLU
818
A
ARG
819
n
524
ARG
819
A
LEU
820
n
525
LEU
820
A
GLN
821
n
526
GLN
821
A
ALA
822
n
527
ALA
822
A
HIS
823
n
528
HIS
823
A
LEU
824
n
529
LEU
824
A
LEU
825
n
530
LEU
825
A
LEU
826
n
531
LEU
826
A
GLN
827
n
532
GLN
827
A
VAL
828
n
533
VAL
828
A
HIS
829
n
534
HIS
829
A
ASP
830
n
535
ASP
830
A
GLU
831
n
536
GLU
831
A
LEU
832
n
537
LEU
832
A
ILE
833
n
538
ILE
833
A
LEU
834
n
539
LEU
834
A
GLU
835
n
540
GLU
835
A
ALA
836
n
541
ALA
836
A
PRO
837
n
542
PRO
837
A
LYS
838
n
543
LYS
838
A
GLU
839
n
544
GLU
839
A
GLU
840
n
545
GLU
840
A
MET
841
n
546
MET
841
A
GLU
842
n
547
GLU
842
A
ARG
843
n
548
ARG
843
A
LEU
844
n
549
LEU
844
A
CYS
845
n
550
CYS
845
A
ARG
846
n
551
ARG
846
A
LEU
847
n
552
LEU
847
A
VAL
848
n
553
VAL
848
A
PRO
849
n
554
PRO
849
A
GLU
850
n
555
GLU
850
A
VAL
851
n
556
VAL
851
A
MET
852
n
557
MET
852
A
GLU
853
n
558
GLU
853
A
GLN
854
n
559
GLN
854
A
ALA
855
n
560
ALA
855
A
VAL
856
n
561
VAL
856
A
THR
857
n
562
THR
857
A
LEU
858
n
563
LEU
858
A
ARG
859
n
564
ARG
859
A
VAL
860
n
565
VAL
860
A
PRO
861
n
566
PRO
861
A
LEU
862
n
567
LEU
862
A
LYS
863
n
568
LYS
863
A
VAL
864
n
569
VAL
864
A
ASP
865
n
570
ASP
865
A
TYR
866
n
571
TYR
866
A
HIS
867
n
572
HIS
867
A
TYR
868
n
573
TYR
868
A
GLY
869
n
574
GLY
869
A
SER
870
n
575
SER
870
A
THR
871
n
576
THR
871
A
TRP
872
n
577
TRP
872
A
TYR
873
n
578
TYR
873
A
ASP
874
n
579
ASP
874
A
ALA
875
n
580
ALA
875
A
LYS
876
n
581
LYS
876
A
n
1
1
B
n
2
2
B
n
3
3
B
DC
4
n
4
DC
4
B
DG
5
n
5
DG
5
B
DA
6
n
6
DA
6
B
DG
7
n
7
DG
7
B
DT
8
n
8
DT
8
B
DC
9
n
9
DC
9
B
DA
10
n
10
DA
10
B
DG
11
n
11
DG
11
B
DG
12
n
12
DG
12
B
DC
1
n
1
DC
1
C
DC
2
n
2
DC
2
C
DT
3
n
3
DT
3
C
DG
4
n
4
DG
4
C
DA
5
n
5
DA
5
C
DC
6
n
6
DC
6
C
DT
7
n
7
DT
7
C
DC
8
n
8
DC
8
C
DG
9
n
9
DG
9
C
author_and_software_defined_assembly
PISA
3
trimeric
6360
-73
27460
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
302
A
N
THR
7
A
O
ARG
343
A
O
ARG
48
A
O
PHE
344
A
O
PHE
49
A
N
VAL
337
A
N
VAL
42
A
O
VAL
338
A
O
VAL
43
A
N
ALA
317
A
N
ALA
22
A
N
LEU
318
A
N
LEU
23
A
O
SER
369
A
O
SER
74
A
N
MET
370
A
N
MET
75
A
O
PHE
392
A
O
PHE
97
A
O
VAL
602
A
O
VAL
307
A
N
VAL
493
A
N
VAL
198
A
N
LYS
494
A
N
LYS
199
A
O
VAL
641
A
O
VAL
346
A
N
ASN
607
A
N
ASN
312
A
O
SER
617
A
O
SER
322
A
N
LEU
825
A
N
LEU
530
A
O
ILE
833
A
O
ILE
538
A
O
LEU
834
A
O
LEU
539
A
N
PHE
650
A
N
PHE
355
A
N
ALA
651
A
N
ALA
356
A
O
HIS
867
A
O
HIS
572
A
N
VAL
763
A
N
VAL
468
A
O
ARG
771
A
O
ARG
476
1
C
OP3
DG
101
L
OP3
DG
1
1
N
1
C
P
DG
101
L
P
DG
1
1
N
1
C
OP1
DG
101
L
OP1
DG
1
1
N
1
C
OP2
DG
101
L
OP2
DG
1
1
N
1
C
O5'
DG
101
L
O5'
DG
1
1
N
1
C
C5'
DG
101
L
C5'
DG
1
1
N
1
C
C4'
DG
101
L
C4'
DG
1
1
N
1
C
O4'
DG
101
L
O4'
DG
1
1
N
1
C
C3'
DG
101
L
C3'
DG
1
1
N
1
C
O3'
DG
101
L
O3'
DG
1
1
N
1
C
C2'
DG
101
L
C2'
DG
1
1
N
1
B
DA
1
B
DA
1
1
Y
1
B
DT
2
B
DT
2
1
Y
1
B
DC
3
B
DC
3
1
Y
1
-4.48
0.70
108.00
103.52
B
B
B
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
-6.22
1.00
110.10
103.88
B
B
B
C1'
O4'
C4'
DT
DT
DT
8
8
8
N
1
-4.85
0.80
109.40
104.55
B
B
B
O5'
C5'
C4'
DC
DC
DC
9
9
9
N
1
2.18
0.30
108.30
110.48
B
B
B
O4'
C1'
N1
DC
DC
DC
9
9
9
N
1
7.43
1.20
119.70
127.13
B
B
B
C3'
O3'
P
DC
DC
DA
9
9
10
Y
1
-5.58
0.70
102.20
96.62
B
B
B
C4'
C3'
C2'
DA
DA
DA
10
10
10
N
1
3.14
0.30
108.30
111.44
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
10.90
1.50
119.60
130.50
C
C
C
OP1
P
OP2
DC
DC
DC
2
2
2
N
1
4.93
0.30
108.30
113.23
C
C
C
O4'
C1'
N1
DT
DT
DT
3
3
3
N
1
4.32
0.30
108.30
112.62
C
C
C
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
B
B
O3'
C3'
DG
DG
12
12
-0.071
0.006
1.419
1.348
N
1
C
C
C5
C7
DT
DT
3
3
0.043
0.006
1.496
1.539
N
1
A
ASP
402
-164.14
93.07
1
A
ALA
421
-80.73
49.55
1
A
LYS
431
-124.29
-54.57
1
A
LEU
477
-121.74
-67.34
1
A
GLN
524
175.12
157.95
1
A
GLU
540
-124.58
-55.57
1
A
ILE
588
-96.87
-71.21
1
A
ILE
628
-139.45
-31.11
1
A
GLN
691
39.88
59.73
1
A
HIS
829
72.00
-55.23
31.094
2.18
0.00
0.00
-0.77
0.00
-1.41
0.953
0.932
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23391
0.19103
0.19322
0.19322
2.05
70.05
2753
55763
51429
5.1
97.10
4.493
0.118
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.170
0.159
0.80
0.80
1.40
PDB 3HT3
MAXIMUM LIKELIHOOD
MASK
2.05
70.05
242
5325
58
366
4659
0.018
0.022
5223
1.800
2.073
7132
6.293
5.000
586
34.891
24.156
231
18.190
15.000
884
21.156
15.000
39
0.122
0.200
796
0.008
0.021
3785
0.918
1.500
2911
1.781
2.000
4700
2.980
3.000
2312
4.792
4.500
2429
0.303
0.291
2.103
213
3378
20
88.32
2.05
70.05
4DSI
55763
54369
0
0
0.075
1
13.3
4.3
97.5
2.05
2.12
1.8
5503
0.337
1
2.6
90.7
data collection
HKL-2000
phasing
PHASER
refinement
REFMAC
5.5.0109
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, Se-dGTP and Calcium
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
6
N
N
7
N
N
8
N
N
8
N
N
8
N
N
A
THR
308
A
THR
13
HELX_P
A
ALA
313
A
ALA
18
5
1
6
A
ARG
347
A
ARG
52
HELX_P
A
LEU
352
A
LEU
57
1
2
6
A
ASP
354
A
ASP
59
HELX_P
A
ASP
363
A
ASP
68
1
3
10
A
ASP
372
A
ASP
77
HELX_P
A
TRP
382
A
TRP
87
1
4
11
A
LEU
394
A
LEU
99
HELX_P
A
ASP
402
A
ASP
107
1
5
9
A
PRO
403
A
PRO
108
HELX_P
A
GLY
406
A
GLY
111
5
6
4
A
ASP
409
A
ASP
114
HELX_P
A
MET
416
A
MET
121
1
7
8
A
PRO
424
A
PRO
129
HELX_P
A
GLY
430
A
GLY
135
1
8
7
A
ASP
439
A
ASP
144
HELX_P
A
ASN
468
A
ASN
173
1
9
30
A
GLN
470
A
GLN
175
HELX_P
A
LEU
477
A
LEU
182
1
10
8
A
LEU
477
A
LEU
182
HELX_P
A
GLY
492
A
GLY
197
1
11
16
A
ASP
496
A
ASP
201
HELX_P
A
ALA
522
A
ALA
227
1
12
27
A
SER
530
A
SER
235
HELX_P
A
GLU
540
A
GLU
245
1
13
11
A
SER
557
A
SER
262
HELX_P
A
ALA
565
A
ALA
270
1
14
9
A
PRO
566
A
PRO
271
HELX_P
A
HIS
568
A
HIS
273
5
15
3
A
GLU
569
A
GLU
274
HELX_P
A
ILE
588
A
ILE
293
1
16
20
A
ILE
588
A
ILE
293
HELX_P
A
VAL
595
A
VAL
300
1
17
8
A
LEU
630
A
LEU
335
HELX_P
A
LYS
635
A
LYS
340
1
18
6
A
ILE
636
A
ILE
341
HELX_P
A
GLN
638
A
GLN
343
5
19
3
A
GLN
656
A
GLN
361
HELX_P
A
GLU
667
A
GLU
372
1
20
12
A
ASP
668
A
ASP
373
HELX_P
A
ARG
677
A
ARG
382
1
21
10
A
ASP
680
A
ASP
385
HELX_P
A
GLN
691
A
GLN
396
1
22
12
A
SER
693
A
SER
398
HELX_P
A
VAL
697
A
VAL
402
5
23
5
A
THR
698
A
THR
403
HELX_P
A
ILE
712
A
ILE
417
1
24
15
A
VAL
713
A
VAL
418
HELX_P
A
GLY
715
A
GLY
420
5
25
3
A
SER
717
A
SER
422
HELX_P
A
ASN
726
A
ASN
431
1
26
10
A
SER
728
A
SER
433
HELX_P
A
PHE
743
A
PHE
448
1
27
16
A
PHE
743
A
PHE
448
HELX_P
A
GLY
761
A
GLY
466
1
28
19
A
PRO
774
A
PRO
479
HELX_P
A
SER
778
A
SER
483
5
29
5
A
ASN
780
A
ASN
485
HELX_P
A
ARG
819
A
ARG
524
1
30
40
A
GLU
840
A
GLU
545
HELX_P
A
ALA
855
A
ALA
560
1
31
16
A
THR
871
A
THR
576
HELX_P
A
ALA
875
A
ALA
580
5
32
5
metalc
2.214
C
DC
8
C
OP1
DC
8
1_555
C
CA
102
M
CA
CA
1_555
hydrog
WATSON-CRICK
B
DC
4
B
N3
DC
4
1_555
C
DG
9
C
N1
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
4
B
N4
DC
4
1_555
C
DG
9
C
O6
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
4
B
O2
DC
4
1_555
C
DG
9
C
N2
DG
9
1_555
hydrog
WATSON-CRICK
B
DG
5
B
N1
DG
5
1_555
C
DC
8
C
N3
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
5
B
N2
DG
5
1_555
C
DC
8
C
O2
DC
8
1_555
hydrog
WATSON-CRICK
B
DG
5
B
O6
DG
5
1_555
C
DC
8
C
N4
DC
8
1_555
hydrog
WATSON-CRICK
B
DA
6
B
N1
DA
6
1_555
C
DT
7
C
N3
DT
7
1_555
hydrog
WATSON-CRICK
B
DA
6
B
N6
DA
6
1_555
C
DT
7
C
O4
DT
7
1_555
hydrog
WATSON-CRICK
B
DG
7
B
N1
DG
7
1_555
C
DC
6
C
N3
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
7
B
N2
DG
7
1_555
C
DC
6
C
O2
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
7
B
O6
DG
7
1_555
C
DC
6
C
N4
DC
6
1_555
hydrog
WATSON-CRICK
B
DT
8
B
N3
DT
8
1_555
C
DA
5
C
N1
DA
5
1_555
hydrog
WATSON-CRICK
B
DT
8
B
O4
DT
8
1_555
C
DA
5
C
N6
DA
5
1_555
hydrog
WATSON-CRICK
B
DC
9
B
N3
DC
9
1_555
C
DG
4
C
N1
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
9
B
N4
DC
9
1_555
C
DG
4
C
O6
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
9
B
O2
DC
9
1_555
C
DG
4
C
N2
DG
4
1_555
hydrog
WATSON-CRICK
B
DA
10
B
N1
DA
10
1_555
C
DT
3
C
N3
DT
3
1_555
hydrog
WATSON-CRICK
B
DA
10
B
N6
DA
10
1_555
C
DT
3
C
O4
DT
3
1_555
hydrog
WATSON-CRICK
B
DG
11
B
N1
DG
11
1_555
C
DC
2
C
N3
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
11
B
N2
DG
11
1_555
C
DC
2
C
O2
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
11
B
O6
DG
11
1_555
C
DC
2
C
N4
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
12
B
N1
DG
12
1_555
C
DC
1
C
N3
DC
1
1_555
hydrog
WATSON-CRICK
B
DG
12
B
N2
DG
12
1_555
C
DC
1
C
O2
DC
1
1_555
hydrog
WATSON-CRICK
B
DG
12
B
O6
DG
12
1_555
C
DC
1
C
N4
DC
1
1_555
TRANSFERASE/DNA
DNA polymerase, polymerization fidelity, calcium cation, purine selectivity, blunt end extension, base stacking, DNA synthesis, TRANSFERASE-DNA complex
A
GLU
620
A
GLU
325
1
A
PRO
621
A
PRO
326
0.72
D9N168_GEOSE
UNP
1
1
D9N168
KMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAA
VALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWEL
ERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVI
LFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLS
STEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEV
TPNMRRQAKAVNFGIPYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDIT
SRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT
LRVPLKVDYHYGSTWYDAK
4DSI
PDB
2
1
4DSI
ATCCGAGTCAGG
4DSI
PDB
3
1
4DSI
CCTGACTCG
1
579
4DSI
298
876
D9N168
A
1
3
581
1
12
4DSI
1
12
4DSI
B
2
1
12
1
9
4DSI
1
9
4DSI
C
3
1
9
1
expression tag
GLY
296
4DSI
A
D9N168
UNP
1
1
expression tag
SER
297
4DSI
A
D9N168
UNP
2
1
ALA
engineered mutation
ASP
598
4DSI
A
D9N168
UNP
301
303
1
PRO
engineered mutation
VAL
713
4DSI
A
D9N168
UNP
416
418
6
3
2
4
2
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
302
A
THR
7
A
LEU
303
A
LEU
8
A
GLY
342
A
GLY
47
A
LEU
346
A
LEU
51
A
GLY
334
A
GLY
39
A
ASN
339
A
ASN
44
A
LYS
315
A
LYS
20
A
GLU
321
A
GLU
26
A
LYS
367
A
LYS
72
A
MET
370
A
MET
75
A
VAL
390
A
VAL
95
A
ASP
393
A
ASP
98
A
LYS
601
A
LYS
306
A
VAL
602
A
VAL
307
A
VAL
493
A
VAL
198
A
VAL
495
A
VAL
200
A
PHE
640
A
PHE
345
A
VAL
641
A
VAL
346
A
ILE
605
A
ILE
310
A
ASN
607
A
ASN
312
A
SER
617
A
SER
322
A
THR
619
A
THR
324
A
HIS
823
A
HIS
528
A
GLN
827
A
GLN
532
A
GLU
831
A
GLU
536
A
PRO
837
A
PRO
542
A
TRP
647
A
TRP
352
A
TYR
654
A
TYR
359
A
VAL
864
A
VAL
569
A
GLY
869
A
GLY
574
A
TYR
762
A
TYR
467
A
THR
764
A
THR
469
A
ARG
770
A
ARG
475
A
TYR
772
A
TYR
477
BINDING SITE FOR RESIDUE GOL A 901
A
GOL
901
Software
9
BINDING SITE FOR RESIDUE GOL A 902
A
GOL
902
Software
8
BINDING SITE FOR RESIDUE GOL A 903
A
GOL
903
Software
4
BINDING SITE FOR RESIDUE GOL A 904
A
GOL
904
Software
8
BINDING SITE FOR RESIDUE GOL A 905
A
GOL
905
Software
4
BINDING SITE FOR RESIDUE SO4 A 906
A
SO4
906
Software
4
BINDING SITE FOR RESIDUE SO4 A 907
A
SO4
907
Software
5
BINDING SITE FOR RESIDUE SO4 A 908
A
SO4
908
Software
4
BINDING SITE FOR RESIDUE DG C 101
C
DG
101
Software
2
BINDING SITE FOR RESIDUE CA C 102
C
CA
102
Software
4
A
GLU
321
A
GLU
26
9
1_555
A
PHE
371
A
PHE
76
9
1_555
A
ARG
375
A
ARG
80
9
1_555
A
ASP
409
A
ASP
114
9
1_555
A
VAL
410
A
VAL
115
9
1_555
A
ASP
425
A
ASP
130
9
1_555
A
LYS
450
A
LYS
155
9
1_555
A
HOH
1154
N
HOH
9
1_555
A
HOH
1198
N
HOH
9
1_555
A
THR
586
A
THR
291
8
1_555
A
TYR
587
A
TYR
292
8
1_555
A
LEU
591
A
LEU
296
8
1_555
A
PRO
621
A
PRO
326
8
1_555
A
ASN
622
A
ASN
327
8
1_555
A
ASN
625
A
ASN
330
8
1_555
A
HOH
1080
N
HOH
8
1_555
C
DA
5
C
DA
5
8
1_555
A
TRP
382
A
TRP
87
4
1_555
A
PHE
490
A
PHE
195
4
1_555
A
ALA
491
A
ALA
196
4
1_555
A
LYS
601
A
LYS
306
4
1_555
A
TYR
327
A
TYR
32
8
1_555
A
ASP
372
A
ASP
77
8
1_555
A
LYS
374
A
LYS
79
8
1_555
A
PHE
606
A
PHE
311
8
1_555
A
ASN
607
A
ASN
312
8
1_555
A
GLN
608
A
GLN
313
8
1_555
A
HOH
1027
N
HOH
8
1_555
A
HOH
1043
N
HOH
8
1_555
A
GLY
715
A
GLY
420
4
1_555
A
ILE
716
A
ILE
421
4
1_555
A
PHE
740
A
PHE
445
4
1_555
A
MET
750
A
MET
455
4
1_555
A
MET
299
A
MET
4
4
1_555
A
ALA
300
A
ALA
5
4
1_555
A
ARG
343
A
ARG
48
4
1_555
A
ARG
677
A
ARG
382
4
3_545
A
TYR
714
A
TYR
419
5
1_555
A
PHE
786
A
PHE
491
5
1_555
A
ARG
789
A
ARG
494
5
1_555
A
HOH
1085
N
HOH
5
1_555
C
DC
1
C
DC
1
5
1_555
A
HIS
682
A
HIS
387
4
1_555
A
ARG
702
A
ARG
407
4
1_555
A
LYS
706
A
LYS
411
4
1_555
A
HOH
1158
N
HOH
4
1_555
B
DC
4
B
DC
4
2
1_555
C
DG
9
C
DG
9
2
1_555
A
ASN
527
A
ASN
232
4
1_555
A
ASN
529
A
ASN
234
4
1_555
C
DT
7
C
DT
7
4
1_555
C
DC
8
C
DC
8
4
1_555
19
P 21 21 21