0.026162
0.000000
0.000000
0.000000
0.016374
0.000000
0.000000
0.000000
0.008167
0.00000
0.00000
0.00000
Min, X.
Johnstone, S.
Walker, N.
Wang, Z.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
38.224
61.073
122.439
C18 H22 Cl N5 O9 P 1
518.822
7-[2-(4-chlorophenoxy)ethyl]guanosine 5'-(dihydrogen phosphate)
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
R
C
Y
2
N
N
N
3
N
O
N
4
N
P
N
5
N
CL
N
6
R
C
Y
7
N
N
N
8
N
O
N
9
S
C
N
10
N
N
N
11
N
O
N
12
R
C
N
13
N
N
N
14
N
O
N
15
N
C
N
16
N
N
N
17
N
O
Y
18
N
C
N
19
N
O
Y
20
N
C
N
21
N
O
Y
22
N
C
N
23
N
O
N
24
N
C
N
25
N
O
N
26
N
C
N
27
N
C
N
28
N
C
Y
29
N
C
Y
30
N
C
Y
31
N
C
Y
32
N
C
Y
33
N
C
Y
34
N
C
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
N
N
58
S
C
N
59
N
C
N
60
N
O
N
61
N
C
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
N
N
71
S
C
N
72
N
C
N
73
N
O
N
74
N
C
N
75
N
C
N
76
N
C
N
77
N
N
N
78
N
C
N
79
N
N
N
80
N
N
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
N
N
98
S
C
N
99
N
C
N
100
N
O
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
N
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
S
C
N
116
N
C
N
117
N
O
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
O
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
R
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
S
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
N
C
N
159
N
C
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
N
C
N
179
N
C
N
180
N
C
N
181
N
O
N
182
N
O
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
N
C
N
195
N
C
N
196
N
O
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
C
N
204
N
O
N
205
N
C
N
206
N
O
N
207
N
C
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
Y
222
N
C
Y
223
N
N
Y
224
N
C
Y
225
N
C
Y
226
N
N
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
S
C
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
C
N
293
N
N
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
N
C
N
315
N
C
N
316
N
S
N
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
N
358
N
C
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
O
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
R
C
N
389
N
O
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
N
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
N
N
429
S
C
N
430
N
C
N
431
N
O
N
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
N
439
N
O
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
N
N
453
S
C
N
454
N
C
N
455
N
O
N
456
N
C
N
457
N
C
N
458
N
C
N
459
N
O
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
Y
4
N
sing
Y
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
doub
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
Y
14
N
sing
Y
15
N
doub
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
doub
N
24
N
sing
N
25
N
sing
N
26
N
doub
Y
27
N
doub
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
Y
32
N
doub
Y
33
N
sing
Y
34
N
sing
Y
35
N
doub
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
Y
221
N
sing
Y
222
N
doub
Y
223
N
doub
N
224
N
sing
Y
225
N
sing
N
226
N
sing
Y
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
Y
329
N
doub
Y
330
N
sing
Y
331
N
sing
N
332
N
sing
Y
333
N
doub
N
334
N
sing
Y
335
N
doub
N
336
N
sing
Y
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
Y
398
N
doub
Y
399
N
sing
Y
400
N
sing
N
401
N
sing
Y
402
N
doub
Y
403
N
sing
Y
404
N
sing
N
405
N
sing
Y
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
Y
426
N
doub
Y
427
N
sing
Y
428
N
sing
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
55
3837
3851
10.1021/jm300037x
22458568
Structure-Guided Design, Synthesis, and Evaluation of Guanine-Derived Inhibitors of the eIF4E mRNA-Cap Interaction.
2012
10.2210/pdb4dt6/pdb
pdb_00004dt6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
90
1
CCD
2007-02-21
ADSC QUANTUM 315r
Single crystal, cylindrically bent, Si(220)
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
5.0.1
ALS
1.0
SYNCHROTRON
ALS BEAMLINE 5.0.1
28040.301
Eukaryotic translation initiation factor 4E
1
man
polymer
518.822
7-[2-(4-chlorophenoxy)ethyl]guanosine 5'-(dihydrogen phosphate)
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
4
syn
non-polymer
18.015
water
39
nat
water
eIF-4E, eIF4E, eIF-4F 25 kDa subunit, mRNA cap-binding protein
no
no
MDYKDDDDKHHHHHHTENLYFQGMATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQ
ANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCL
IGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV
MDYKDDDDKHHHHHHTENLYFQGMATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQ
ANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCL
IGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
EIF4E, EIF4EL1, EIF4F
9606
Homo sapiens
562
Escherichia coli
plasmid
pET101
1
2.55
51.73
VAPOR DIFFUSION, SITTING DROP
The purified protein which contained 100 uM m7-GTP was concentrated to about 7 mg/mL in 20 mM Hepes, pH 7.6, 100 mM KCl, 1mM DTT, and 0.1 mM EDTA for crystallization. The m7-GTP-bound eIF4e protein was crystallized with 1:1 ratio of protein solution to reservoir solution of 17-20% PEG-3350 and 0.1-0.4M Na formate, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
software
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Refinement description
Data collection
Database references
Derived calculations
1
0
2012-04-11
1
1
2012-05-02
1
2
2012-06-27
1
3
2017-11-15
1
4
2024-02-28
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-02-20
REL
REL
6LI
7-[2-(4-chlorophenoxy)ethyl]guanosine 5'-(dihydrogen phosphate)
GOL
GLYCEROL
EDO
1,2-ETHANEDIOL
HOH
water
6LI
1001
2
6LI
6LI
1001
A
GOL
1101
3
GOL
GOL
1002
A
EDO
1102
4
EDO
EDO
1003
A
EDO
1103
4
EDO
EDO
1004
A
EDO
1104
4
EDO
EDO
1005
A
EDO
1105
4
EDO
EDO
1006
A
HOH
1
5
HOH
HOH
1101
A
HOH
2
5
HOH
HOH
1102
A
HOH
3
5
HOH
HOH
1103
A
HOH
4
5
HOH
HOH
1104
A
HOH
5
5
HOH
HOH
1105
A
HOH
6
5
HOH
HOH
1106
A
HOH
7
5
HOH
HOH
1107
A
HOH
8
5
HOH
HOH
1108
A
HOH
9
5
HOH
HOH
1109
A
HOH
10
5
HOH
HOH
1110
A
HOH
11
5
HOH
HOH
1111
A
HOH
12
5
HOH
HOH
1112
A
HOH
13
5
HOH
HOH
1113
A
HOH
14
5
HOH
HOH
1114
A
HOH
15
5
HOH
HOH
1115
A
HOH
16
5
HOH
HOH
1116
A
HOH
17
5
HOH
HOH
1117
A
HOH
18
5
HOH
HOH
1118
A
HOH
19
5
HOH
HOH
1119
A
HOH
20
5
HOH
HOH
1120
A
HOH
21
5
HOH
HOH
1121
A
HOH
22
5
HOH
HOH
1122
A
HOH
23
5
HOH
HOH
1123
A
HOH
24
5
HOH
HOH
1124
A
HOH
25
5
HOH
HOH
1125
A
HOH
26
5
HOH
HOH
1126
A
HOH
27
5
HOH
HOH
1127
A
HOH
28
5
HOH
HOH
1128
A
HOH
29
5
HOH
HOH
1129
A
HOH
30
5
HOH
HOH
1130
A
HOH
31
5
HOH
HOH
1131
A
HOH
32
5
HOH
HOH
1132
A
HOH
33
5
HOH
HOH
1133
A
HOH
34
5
HOH
HOH
1134
A
HOH
35
5
HOH
HOH
1135
A
HOH
36
5
HOH
HOH
1136
A
HOH
37
5
HOH
HOH
1137
A
HOH
38
5
HOH
HOH
1138
A
HOH
39
5
HOH
HOH
1139
A
n
1
-22
A
n
2
-21
A
n
3
-20
A
n
4
-19
A
n
5
-18
A
n
6
-17
A
n
7
-16
A
n
8
-15
A
n
9
-14
A
n
10
-13
A
n
11
-12
A
n
12
-11
A
n
13
-10
A
n
14
-9
A
n
15
-8
A
n
16
-7
A
n
17
-6
A
n
18
-5
A
n
19
-4
A
n
20
-3
A
n
21
-2
A
n
22
-1
A
n
23
0
A
n
24
1
A
n
25
2
A
n
26
3
A
n
27
4
A
n
28
5
A
n
29
6
A
n
30
7
A
n
31
8
A
n
32
9
A
n
33
10
A
n
34
11
A
n
35
12
A
n
36
13
A
n
37
14
A
n
38
15
A
n
39
16
A
n
40
17
A
n
41
18
A
n
42
19
A
n
43
20
A
n
44
21
A
n
45
22
A
n
46
23
A
n
47
24
A
n
48
25
A
n
49
26
A
GLU
27
n
50
GLU
27
A
VAL
28
n
51
VAL
28
A
ALA
29
n
52
ALA
29
A
ASN
30
n
53
ASN
30
A
PRO
31
n
54
PRO
31
A
GLU
32
n
55
GLU
32
A
HIS
33
n
56
HIS
33
A
TYR
34
n
57
TYR
34
A
ILE
35
n
58
ILE
35
A
LYS
36
n
59
LYS
36
A
HIS
37
n
60
HIS
37
A
PRO
38
n
61
PRO
38
A
LEU
39
n
62
LEU
39
A
GLN
40
n
63
GLN
40
A
ASN
41
n
64
ASN
41
A
ARG
42
n
65
ARG
42
A
TRP
43
n
66
TRP
43
A
ALA
44
n
67
ALA
44
A
LEU
45
n
68
LEU
45
A
TRP
46
n
69
TRP
46
A
PHE
47
n
70
PHE
47
A
PHE
48
n
71
PHE
48
A
LYS
49
n
72
LYS
49
A
ASN
50
n
73
ASN
50
A
ASP
51
n
74
ASP
51
A
LYS
52
n
75
LYS
52
A
SER
53
n
76
SER
53
A
LYS
54
n
77
LYS
54
A
THR
55
n
78
THR
55
A
TRP
56
n
79
TRP
56
A
GLN
57
n
80
GLN
57
A
ALA
58
n
81
ALA
58
A
ASN
59
n
82
ASN
59
A
LEU
60
n
83
LEU
60
A
ARG
61
n
84
ARG
61
A
LEU
62
n
85
LEU
62
A
ILE
63
n
86
ILE
63
A
SER
64
n
87
SER
64
A
LYS
65
n
88
LYS
65
A
PHE
66
n
89
PHE
66
A
ASP
67
n
90
ASP
67
A
THR
68
n
91
THR
68
A
VAL
69
n
92
VAL
69
A
GLU
70
n
93
GLU
70
A
ASP
71
n
94
ASP
71
A
PHE
72
n
95
PHE
72
A
TRP
73
n
96
TRP
73
A
ALA
74
n
97
ALA
74
A
LEU
75
n
98
LEU
75
A
TYR
76
n
99
TYR
76
A
ASN
77
n
100
ASN
77
A
HIS
78
n
101
HIS
78
A
ILE
79
n
102
ILE
79
A
GLN
80
n
103
GLN
80
A
LEU
81
n
104
LEU
81
A
SER
82
n
105
SER
82
A
SER
83
n
106
SER
83
A
ASN
84
n
107
ASN
84
A
LEU
85
n
108
LEU
85
A
MET
86
n
109
MET
86
A
PRO
87
n
110
PRO
87
A
GLY
88
n
111
GLY
88
A
CYS
89
n
112
CYS
89
A
ASP
90
n
113
ASP
90
A
TYR
91
n
114
TYR
91
A
SER
92
n
115
SER
92
A
LEU
93
n
116
LEU
93
A
PHE
94
n
117
PHE
94
A
LYS
95
n
118
LYS
95
A
ASP
96
n
119
ASP
96
A
GLY
97
n
120
GLY
97
A
ILE
98
n
121
ILE
98
A
GLU
99
n
122
GLU
99
A
PRO
100
n
123
PRO
100
A
MET
101
n
124
MET
101
A
TRP
102
n
125
TRP
102
A
GLU
103
n
126
GLU
103
A
ASP
104
n
127
ASP
104
A
GLU
105
n
128
GLU
105
A
LYS
106
n
129
LYS
106
A
ASN
107
n
130
ASN
107
A
LYS
108
n
131
LYS
108
A
ARG
109
n
132
ARG
109
A
GLY
110
n
133
GLY
110
A
GLY
111
n
134
GLY
111
A
ARG
112
n
135
ARG
112
A
TRP
113
n
136
TRP
113
A
LEU
114
n
137
LEU
114
A
ILE
115
n
138
ILE
115
A
THR
116
n
139
THR
116
A
LEU
117
n
140
LEU
117
A
ASN
118
n
141
ASN
118
A
LYS
119
n
142
LYS
119
A
GLN
120
n
143
GLN
120
A
GLN
121
n
144
GLN
121
A
ARG
122
n
145
ARG
122
A
ARG
123
n
146
ARG
123
A
SER
124
n
147
SER
124
A
ASP
125
n
148
ASP
125
A
LEU
126
n
149
LEU
126
A
ASP
127
n
150
ASP
127
A
ARG
128
n
151
ARG
128
A
PHE
129
n
152
PHE
129
A
TRP
130
n
153
TRP
130
A
LEU
131
n
154
LEU
131
A
GLU
132
n
155
GLU
132
A
THR
133
n
156
THR
133
A
LEU
134
n
157
LEU
134
A
LEU
135
n
158
LEU
135
A
CYS
136
n
159
CYS
136
A
LEU
137
n
160
LEU
137
A
ILE
138
n
161
ILE
138
A
GLY
139
n
162
GLY
139
A
GLU
140
n
163
GLU
140
A
SER
141
n
164
SER
141
A
PHE
142
n
165
PHE
142
A
ASP
143
n
166
ASP
143
A
ASP
144
n
167
ASP
144
A
TYR
145
n
168
TYR
145
A
SER
146
n
169
SER
146
A
ASP
147
n
170
ASP
147
A
ASP
148
n
171
ASP
148
A
VAL
149
n
172
VAL
149
A
CYS
150
n
173
CYS
150
A
GLY
151
n
174
GLY
151
A
ALA
152
n
175
ALA
152
A
VAL
153
n
176
VAL
153
A
VAL
154
n
177
VAL
154
A
ASN
155
n
178
ASN
155
A
VAL
156
n
179
VAL
156
A
ARG
157
n
180
ARG
157
A
ALA
158
n
181
ALA
158
A
LYS
159
n
182
LYS
159
A
GLY
160
n
183
GLY
160
A
ASP
161
n
184
ASP
161
A
LYS
162
n
185
LYS
162
A
ILE
163
n
186
ILE
163
A
ALA
164
n
187
ALA
164
A
ILE
165
n
188
ILE
165
A
TRP
166
n
189
TRP
166
A
THR
167
n
190
THR
167
A
THR
168
n
191
THR
168
A
GLU
169
n
192
GLU
169
A
CYS
170
n
193
CYS
170
A
GLU
171
n
194
GLU
171
A
ASN
172
n
195
ASN
172
A
ARG
173
n
196
ARG
173
A
GLU
174
n
197
GLU
174
A
ALA
175
n
198
ALA
175
A
VAL
176
n
199
VAL
176
A
THR
177
n
200
THR
177
A
HIS
178
n
201
HIS
178
A
ILE
179
n
202
ILE
179
A
GLY
180
n
203
GLY
180
A
ARG
181
n
204
ARG
181
A
VAL
182
n
205
VAL
182
A
TYR
183
n
206
TYR
183
A
LYS
184
n
207
LYS
184
A
GLU
185
n
208
GLU
185
A
ARG
186
n
209
ARG
186
A
LEU
187
n
210
LEU
187
A
GLY
188
n
211
GLY
188
A
LEU
189
n
212
LEU
189
A
PRO
190
n
213
PRO
190
A
PRO
191
n
214
PRO
191
A
LYS
192
n
215
LYS
192
A
ILE
193
n
216
ILE
193
A
VAL
194
n
217
VAL
194
A
ILE
195
n
218
ILE
195
A
GLY
196
n
219
GLY
196
A
TYR
197
n
220
TYR
197
A
GLN
198
n
221
GLN
198
A
SER
199
n
222
SER
199
A
HIS
200
n
223
HIS
200
A
ALA
201
n
224
ALA
201
A
ASP
202
n
225
ASP
202
A
THR
203
n
226
THR
203
A
ALA
204
n
227
ALA
204
A
THR
205
n
228
THR
205
A
LYS
206
n
229
LYS
206
A
SER
207
n
230
SER
207
A
n
231
208
A
n
232
209
A
n
233
210
A
n
234
211
A
LYS
212
n
235
LYS
212
A
ASN
213
n
236
ASN
213
A
ARG
214
n
237
ARG
214
A
PHE
215
n
238
PHE
215
A
VAL
216
n
239
VAL
216
A
VAL
217
n
240
VAL
217
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
66
A
O
PHE
89
A
N
TRP
43
A
N
TRP
66
A
N
ALA
44
A
N
ALA
67
A
O
PHE
94
A
O
PHE
117
A
N
TYR
91
A
N
TYR
114
A
O
VAL
154
A
O
VAL
177
A
N
GLY
151
A
N
GLY
174
A
O
TRP
166
A
O
TRP
189
A
O
ILE
163
A
O
ILE
186
A
N
ILE
115
A
N
ILE
138
A
N
LEU
114
A
N
LEU
137
A
O
GLY
196
A
O
GLY
219
A
N
TYR
197
A
N
TYR
220
A
O
PHE
215
A
O
PHE
238
1
A
MET
-22
A
MET
1
1
Y
1
A
ASP
-21
A
ASP
2
1
Y
1
A
TYR
-20
A
TYR
3
1
Y
1
A
LYS
-19
A
LYS
4
1
Y
1
A
ASP
-18
A
ASP
5
1
Y
1
A
ASP
-17
A
ASP
6
1
Y
1
A
ASP
-16
A
ASP
7
1
Y
1
A
ASP
-15
A
ASP
8
1
Y
1
A
LYS
-14
A
LYS
9
1
Y
1
A
HIS
-13
A
HIS
10
1
Y
1
A
HIS
-12
A
HIS
11
1
Y
1
A
HIS
-11
A
HIS
12
1
Y
1
A
HIS
-10
A
HIS
13
1
Y
1
A
HIS
-9
A
HIS
14
1
Y
1
A
HIS
-8
A
HIS
15
1
Y
1
A
THR
-7
A
THR
16
1
Y
1
A
GLU
-6
A
GLU
17
1
Y
1
A
ASN
-5
A
ASN
18
1
Y
1
A
LEU
-4
A
LEU
19
1
Y
1
A
TYR
-3
A
TYR
20
1
Y
1
A
PHE
-2
A
PHE
21
1
Y
1
A
GLN
-1
A
GLN
22
1
Y
1
A
GLY
0
A
GLY
23
1
Y
1
A
MET
1
A
MET
24
1
Y
1
A
ALA
2
A
ALA
25
1
Y
1
A
THR
3
A
THR
26
1
Y
1
A
VAL
4
A
VAL
27
1
Y
1
A
GLU
5
A
GLU
28
1
Y
1
A
PRO
6
A
PRO
29
1
Y
1
A
GLU
7
A
GLU
30
1
Y
1
A
THR
8
A
THR
31
1
Y
1
A
THR
9
A
THR
32
1
Y
1
A
PRO
10
A
PRO
33
1
Y
1
A
THR
11
A
THR
34
1
Y
1
A
PRO
12
A
PRO
35
1
Y
1
A
ASN
13
A
ASN
36
1
Y
1
A
PRO
14
A
PRO
37
1
Y
1
A
PRO
15
A
PRO
38
1
Y
1
A
THR
16
A
THR
39
1
Y
1
A
THR
17
A
THR
40
1
Y
1
A
GLU
18
A
GLU
41
1
Y
1
A
GLU
19
A
GLU
42
1
Y
1
A
GLU
20
A
GLU
43
1
Y
1
A
LYS
21
A
LYS
44
1
Y
1
A
THR
22
A
THR
45
1
Y
1
A
GLU
23
A
GLU
46
1
Y
1
A
SER
24
A
SER
47
1
Y
1
A
ASN
25
A
ASN
48
1
Y
1
A
GLN
26
A
GLN
49
1
Y
1
A
GLY
208
A
GLY
231
1
Y
1
A
SER
209
A
SER
232
1
Y
1
A
THR
210
A
THR
233
1
Y
1
A
THR
211
A
THR
234
1
Y
1
A
TYR
34
-149.56
-6.09
1
A
ASP
143
47.17
-114.60
1
A
THR
205
-140.73
25.27
22.652
-0.58
0.00
0.00
-0.34
0.00
0.92
0.929
0.867
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.26715
0.19082
0.19446
2.60
36.491
404
8121
4.7
91.27
9.779
0.215
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.548
0.329
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
MASK
2.60
36.491
39
1642
56
0
1547
0.017
0.022
1657
1.686
1.962
2238
6.313
5.000
189
38.575
23.929
84
16.929
15.000
287
15.987
15.000
12
0.112
0.200
232
0.006
0.021
1247
0.854
1.500
935
1.663
2.000
1513
2.310
3.000
722
3.803
4.500
723
0.369
0.239
2.667
38
560
560
20
87.68
43.6
2.6
61.20
4DT6
24017
8533
2.2
0.118
1
9.1
2.8
93
0.439
2.60
2.74
1.7
972
1
89.3
data collection
BOS
phasing
MOLREP
refinement
REFMAC
5.5.0109
data reduction
MOSFLM
data scaling
SCALA
Co-crystal structure of eIF4E with inhibitor
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
A
ASN
30
A
ASN
53
HELX_P
A
TYR
34
A
TYR
57
5
1
5
A
THR
55
A
THR
78
HELX_P
A
ALA
58
A
ALA
81
5
2
4
A
VAL
69
A
VAL
92
HELX_P
A
ILE
79
A
ILE
102
1
3
11
A
LEU
81
A
LEU
104
HELX_P
A
LEU
85
A
LEU
108
5
4
5
A
GLN
120
A
GLN
143
HELX_P
A
ASP
125
A
ASP
148
1
5
6
A
ASP
125
A
ASP
148
HELX_P
A
GLY
139
A
GLY
162
1
6
15
A
PHE
142
A
PHE
165
HELX_P
A
SER
146
A
SER
169
5
7
5
A
ASN
172
A
ASN
195
HELX_P
A
LEU
187
A
LEU
210
1
8
16
A
HIS
200
A
HIS
223
HELX_P
A
LYS
206
A
LYS
229
1
9
7
TRANSLATION
CAP-binding protein, translation initiation factor, m7GTP, TRANSLATION
IF4E_HUMAN
UNP
1
1
P06730
MATVEPETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQ
LSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKG
DKIAIWTTECENREAVTHIGRVYKERLGLPPKIVIGYQSHADTATKSGSTTKNRFVV
1
217
4DT6
1
217
P06730
A
1
24
240
1
expression tag
MET
-22
4DT6
A
P06730
UNP
1
1
expression tag
ASP
-21
4DT6
A
P06730
UNP
2
1
expression tag
TYR
-20
4DT6
A
P06730
UNP
3
1
expression tag
LYS
-19
4DT6
A
P06730
UNP
4
1
expression tag
ASP
-18
4DT6
A
P06730
UNP
5
1
expression tag
ASP
-17
4DT6
A
P06730
UNP
6
1
expression tag
ASP
-16
4DT6
A
P06730
UNP
7
1
expression tag
ASP
-15
4DT6
A
P06730
UNP
8
1
expression tag
LYS
-14
4DT6
A
P06730
UNP
9
1
expression tag
HIS
-13
4DT6
A
P06730
UNP
10
1
expression tag
HIS
-12
4DT6
A
P06730
UNP
11
1
expression tag
HIS
-11
4DT6
A
P06730
UNP
12
1
expression tag
HIS
-10
4DT6
A
P06730
UNP
13
1
expression tag
HIS
-9
4DT6
A
P06730
UNP
14
1
expression tag
HIS
-8
4DT6
A
P06730
UNP
15
1
expression tag
THR
-7
4DT6
A
P06730
UNP
16
1
expression tag
GLU
-6
4DT6
A
P06730
UNP
17
1
expression tag
ASN
-5
4DT6
A
P06730
UNP
18
1
expression tag
LEU
-4
4DT6
A
P06730
UNP
19
1
expression tag
TYR
-3
4DT6
A
P06730
UNP
20
1
expression tag
PHE
-2
4DT6
A
P06730
UNP
21
1
expression tag
GLN
-1
4DT6
A
P06730
UNP
22
1
expression tag
GLY
0
4DT6
A
P06730
UNP
23
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
60
A
LEU
83
A
THR
68
A
THR
91
A
PRO
38
A
PRO
61
A
LYS
49
A
LYS
72
A
CYS
89
A
CYS
112
A
LYS
95
A
LYS
118
A
VAL
149
A
VAL
172
A
ASN
155
A
ASN
178
A
LYS
162
A
LYS
185
A
THR
167
A
THR
190
A
GLY
111
A
GLY
134
A
THR
116
A
THR
139
A
ILE
195
A
ILE
218
A
SER
199
A
SER
222
A
PHE
215
A
PHE
238
A
VAL
217
A
VAL
240
BINDING SITE FOR RESIDUE 6LI A 1001
A
6LI
1001
Software
13
BINDING SITE FOR RESIDUE GOL A 1002
A
GOL
1002
Software
2
BINDING SITE FOR RESIDUE EDO A 1003
A
EDO
1003
Software
1
BINDING SITE FOR RESIDUE EDO A 1004
A
EDO
1004
Software
2
BINDING SITE FOR RESIDUE EDO A 1005
A
EDO
1005
Software
1
BINDING SITE FOR RESIDUE EDO A 1006
A
EDO
1006
Software
2
A
TRP
56
A
TRP
79
13
1_555
A
LEU
60
A
LEU
83
13
1_555
A
ASP
90
A
ASP
113
13
1_555
A
SER
92
A
SER
115
13
1_555
A
PRO
100
A
PRO
123
13
1_555
A
MET
101
A
MET
124
13
1_555
A
TRP
102
A
TRP
125
13
1_555
A
GLU
103
A
GLU
126
13
1_555
A
ARG
157
A
ARG
180
13
1_555
A
LYS
162
A
LYS
185
13
1_555
A
HOH
1120
H
HOH
13
3_544
A
HOH
1124
H
HOH
13
1_555
A
HOH
1126
H
HOH
13
1_555
A
LYS
65
A
LYS
88
2
1_555
A
GLY
97
A
GLY
120
2
1_555
A
TRP
73
A
TRP
96
1
1_555
A
ARG
181
A
ARG
204
2
1_555
A
GLU
185
A
GLU
208
2
1_555
A
TYR
76
A
TYR
99
1
1_555
A
ASP
71
A
ASP
94
2
1_555
A
HIS
78
A
HIS
101
2
1_555
19
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