0.007808
0.000000
0.000000
0.000000
0.007808
0.000000
0.000000
0.000000
0.013068
0.00000
0.00000
0.00000
Durand, E.
Audoly, G.
Derrez, E.
Spinelli, S.
Ortiz-Lombardia, M.
Cascales, E.
Raoult, D.
Cambillau, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
128.080
128.080
76.520
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
1083-351X
Structure and functional characterization of a Vibrio cholerae toxin
from the MARTX/VgrG family.
2012
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
PIXEL
2011-12-16
PSI PILATUS 6M
KIRKPATRICK-BAEZ PAIR OF BI- MORPH MIRRORS PLUS CHANNEL CUT CRYOGENICALLY COOLED MONOCHROMATOR CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
0.97918
1.0
PROXIMA 1
SOLEIL
0.97918
SYNCHROTRON
SOLEIL BEAMLINE PROXIMA 1
44164.270
VgrG protein
unp residues 716-1111
1
man
polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
160
nat
water
no
yes
NAQPNLGRSTKATPDFPTHFPKSSIGIENELAGLVVA(MSE)PANSAQKFGYVKSAQGDALF(MSE)LTKD(MSE)NQGS
YQRPPSLQDGKNYQNWQTHTVELVSYPCE(MSE)DDKAAVETRKQA(MSE)LWLATHFTTHIDQSNHQPLAPIQSEDGRF
VIEITNAKHVIAAGNGISAESQGQTIT(MSE)TPSGQQATVGVAAKGFGTSATPELRLLESAPWYQKSLKSQFASLTSAE
NLDDKELAANVFAYLTSIYLKTAELAKKFGIYINEWDP(MSE)SEQITPNANGLTDPKVKNAWEILPRTKPSKIVEILSK
SDAKAV(MSE)KHIKPQLQSRYSESLSKNVFQYFQDGGEVAGHGINNATVGDKHSPELAILFEFRTVPNELQSYLPKTES
TTKSEVKLLDQFDP(MSE)KRKTVIQQVESLV
NAQPNLGRSTKATPDFPTHFPKSSIGIENELAGLVVAMPANSAQKFGYVKSAQGDALFMLTKDMNQGSYQRPPSLQDGKN
YQNWQTHTVELVSYPCEMDDKAAVETRKQAMLWLATHFTTHIDQSNHQPLAPIQSEDGRFVIEITNAKHVIAAGNGISAE
SQGQTITMTPSGQQATVGVAAKGFGTSATPELRLLESAPWYQKSLKSQFASLTSAENLDDKELAANVFAYLTSIYLKTAE
LAKKFGIYINEWDPMSEQITPNANGLTDPKVKNAWEILPRTKPSKIVEILSKSDAKAVMKHIKPQLQSRYSESLSKNVFQ
YFQDGGEVAGHGINNATVGDKHSPELAILFEFRTVPNELQSYLPKTESTTKSEVKLLDQFDPMKRKTVIQQVESLV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
O395
sample
VC_1416, VgrG1
666
Vibrio cholerae
511693
Escherichia coli
BL21
plasmid
pETG-20A
1
3.56
65.42
6.3
mixing 300 nL of protein at 13mg/mL with 100 nL of 2.17 M AmSO4, 0.1 M Bi-Tris pH 7.0 , VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
repository
Initial release
1
0
2012-08-29
RCSB
Y
RCSB
2012-02-21
REL
REL
GOL
GLYCEROL
HOH
water
GOL
1
2
GOL
GOL
401
A
HOH
1
3
HOH
HOH
501
A
HOH
2
3
HOH
HOH
502
A
HOH
3
3
HOH
HOH
503
A
HOH
4
3
HOH
HOH
504
A
HOH
5
3
HOH
HOH
505
A
HOH
6
3
HOH
HOH
506
A
HOH
7
3
HOH
HOH
507
A
HOH
8
3
HOH
HOH
508
A
HOH
9
3
HOH
HOH
509
A
HOH
510
3
HOH
HOH
510
A
HOH
11
3
HOH
HOH
511
A
HOH
12
3
HOH
HOH
512
A
HOH
13
3
HOH
HOH
513
A
HOH
14
3
HOH
HOH
514
A
HOH
15
3
HOH
HOH
515
A
HOH
16
3
HOH
HOH
516
A
HOH
17
3
HOH
HOH
517
A
HOH
18
3
HOH
HOH
518
A
HOH
19
3
HOH
HOH
519
A
HOH
20
3
HOH
HOH
520
A
HOH
21
3
HOH
HOH
521
A
HOH
22
3
HOH
HOH
522
A
HOH
23
3
HOH
HOH
523
A
HOH
24
3
HOH
HOH
524
A
HOH
25
3
HOH
HOH
525
A
HOH
26
3
HOH
HOH
526
A
HOH
27
3
HOH
HOH
527
A
HOH
28
3
HOH
HOH
528
A
HOH
29
3
HOH
HOH
529
A
HOH
30
3
HOH
HOH
530
A
HOH
31
3
HOH
HOH
531
A
HOH
32
3
HOH
HOH
532
A
HOH
33
3
HOH
HOH
533
A
HOH
34
3
HOH
HOH
534
A
HOH
35
3
HOH
HOH
535
A
HOH
36
3
HOH
HOH
536
A
HOH
37
3
HOH
HOH
537
A
HOH
38
3
HOH
HOH
538
A
HOH
39
3
HOH
HOH
539
A
HOH
40
3
HOH
HOH
540
A
HOH
541
3
HOH
HOH
541
A
HOH
42
3
HOH
HOH
542
A
HOH
43
3
HOH
HOH
543
A
HOH
44
3
HOH
HOH
544
A
HOH
45
3
HOH
HOH
545
A
HOH
46
3
HOH
HOH
546
A
HOH
47
3
HOH
HOH
547
A
HOH
49
3
HOH
HOH
548
A
HOH
50
3
HOH
HOH
549
A
HOH
51
3
HOH
HOH
550
A
HOH
52
3
HOH
HOH
551
A
HOH
53
3
HOH
HOH
552
A
HOH
54
3
HOH
HOH
553
A
HOH
55
3
HOH
HOH
554
A
HOH
56
3
HOH
HOH
555
A
HOH
57
3
HOH
HOH
556
A
HOH
58
3
HOH
HOH
557
A
HOH
59
3
HOH
HOH
558
A
HOH
60
3
HOH
HOH
559
A
HOH
61
3
HOH
HOH
560
A
HOH
62
3
HOH
HOH
561
A
HOH
64
3
HOH
HOH
562
A
HOH
65
3
HOH
HOH
563
A
HOH
66
3
HOH
HOH
564
A
HOH
67
3
HOH
HOH
565
A
HOH
68
3
HOH
HOH
566
A
HOH
69
3
HOH
HOH
567
A
HOH
70
3
HOH
HOH
568
A
HOH
72
3
HOH
HOH
569
A
HOH
73
3
HOH
HOH
570
A
HOH
74
3
HOH
HOH
571
A
HOH
75
3
HOH
HOH
572
A
HOH
76
3
HOH
HOH
573
A
HOH
77
3
HOH
HOH
574
A
HOH
79
3
HOH
HOH
575
A
HOH
80
3
HOH
HOH
576
A
HOH
81
3
HOH
HOH
577
A
HOH
82
3
HOH
HOH
578
A
HOH
83
3
HOH
HOH
579
A
HOH
84
3
HOH
HOH
580
A
HOH
85
3
HOH
HOH
581
A
HOH
86
3
HOH
HOH
582
A
HOH
87
3
HOH
HOH
583
A
HOH
88
3
HOH
HOH
584
A
HOH
89
3
HOH
HOH
585
A
HOH
90
3
HOH
HOH
586
A
HOH
91
3
HOH
HOH
587
A
HOH
92
3
HOH
HOH
588
A
HOH
93
3
HOH
HOH
589
A
HOH
94
3
HOH
HOH
590
A
HOH
95
3
HOH
HOH
591
A
HOH
96
3
HOH
HOH
592
A
HOH
97
3
HOH
HOH
593
A
HOH
98
3
HOH
HOH
594
A
HOH
99
3
HOH
HOH
595
A
HOH
600
3
HOH
HOH
596
A
HOH
101
3
HOH
HOH
597
A
HOH
102
3
HOH
HOH
598
A
HOH
103
3
HOH
HOH
599
A
HOH
104
3
HOH
HOH
600
A
HOH
105
3
HOH
HOH
601
A
HOH
106
3
HOH
HOH
602
A
HOH
107
3
HOH
HOH
603
A
HOH
108
3
HOH
HOH
604
A
HOH
109
3
HOH
HOH
605
A
HOH
110
3
HOH
HOH
606
A
HOH
611
3
HOH
HOH
607
A
HOH
112
3
HOH
HOH
608
A
HOH
114
3
HOH
HOH
609
A
HOH
115
3
HOH
HOH
610
A
HOH
116
3
HOH
HOH
611
A
HOH
117
3
HOH
HOH
612
A
HOH
118
3
HOH
HOH
613
A
HOH
119
3
HOH
HOH
614
A
HOH
120
3
HOH
HOH
615
A
HOH
121
3
HOH
HOH
616
A
HOH
122
3
HOH
HOH
617
A
HOH
123
3
HOH
HOH
618
A
HOH
624
3
HOH
HOH
619
A
HOH
125
3
HOH
HOH
620
A
HOH
126
3
HOH
HOH
621
A
HOH
627
3
HOH
HOH
622
A
HOH
128
3
HOH
HOH
623
A
HOH
629
3
HOH
HOH
624
A
HOH
130
3
HOH
HOH
625
A
HOH
131
3
HOH
HOH
626
A
HOH
132
3
HOH
HOH
627
A
HOH
133
3
HOH
HOH
628
A
HOH
134
3
HOH
HOH
629
A
HOH
135
3
HOH
HOH
630
A
HOH
136
3
HOH
HOH
631
A
HOH
137
3
HOH
HOH
632
A
HOH
138
3
HOH
HOH
633
A
HOH
139
3
HOH
HOH
634
A
HOH
140
3
HOH
HOH
635
A
HOH
141
3
HOH
HOH
636
A
HOH
142
3
HOH
HOH
637
A
HOH
143
3
HOH
HOH
638
A
HOH
144
3
HOH
HOH
639
A
HOH
145
3
HOH
HOH
640
A
HOH
646
3
HOH
HOH
641
A
HOH
147
3
HOH
HOH
642
A
HOH
148
3
HOH
HOH
643
A
HOH
149
3
HOH
HOH
644
A
HOH
150
3
HOH
HOH
645
A
HOH
151
3
HOH
HOH
646
A
HOH
152
3
HOH
HOH
647
A
HOH
153
3
HOH
HOH
648
A
HOH
154
3
HOH
HOH
649
A
HOH
155
3
HOH
HOH
650
A
HOH
156
3
HOH
HOH
651
A
HOH
157
3
HOH
HOH
652
A
HOH
158
3
HOH
HOH
653
A
HOH
159
3
HOH
HOH
654
A
HOH
160
3
HOH
HOH
655
A
HOH
161
3
HOH
HOH
656
A
HOH
162
3
HOH
HOH
657
A
HOH
163
3
HOH
HOH
658
A
HOH
164
3
HOH
HOH
659
A
HOH
165
3
HOH
HOH
660
A
n
1
-11
A
n
2
-10
A
n
3
-9
A
n
4
-8
A
n
5
-7
A
n
6
-6
A
n
7
-5
A
n
8
-4
A
n
9
-3
A
THR
-2
n
10
THR
-2
A
LYS
-1
n
11
LYS
-1
A
ALA
0
n
12
ALA
0
A
THR
1
n
13
THR
1
A
PRO
2
n
14
PRO
2
A
ASP
3
n
15
ASP
3
A
PHE
4
n
16
PHE
4
A
PRO
5
n
17
PRO
5
A
THR
6
n
18
THR
6
A
HIS
7
n
19
HIS
7
A
PHE
8
n
20
PHE
8
A
PRO
9
n
21
PRO
9
A
LYS
10
n
22
LYS
10
A
SER
11
n
23
SER
11
A
SER
12
n
24
SER
12
A
ILE
13
n
25
ILE
13
A
GLY
14
n
26
GLY
14
A
ILE
15
n
27
ILE
15
A
GLU
16
n
28
GLU
16
A
ASN
17
n
29
ASN
17
A
GLU
18
n
30
GLU
18
A
LEU
19
n
31
LEU
19
A
ALA
20
n
32
ALA
20
A
GLY
21
n
33
GLY
21
A
LEU
22
n
34
LEU
22
A
VAL
23
n
35
VAL
23
A
VAL
24
n
36
VAL
24
A
ALA
25
n
37
ALA
25
A
MSE
26
n
38
MSE
26
A
PRO
27
n
39
PRO
27
A
ALA
28
n
40
ALA
28
A
ASN
29
n
41
ASN
29
A
SER
30
n
42
SER
30
A
ALA
31
n
43
ALA
31
A
GLN
32
n
44
GLN
32
A
LYS
33
n
45
LYS
33
A
PHE
34
n
46
PHE
34
A
GLY
35
n
47
GLY
35
A
TYR
36
n
48
TYR
36
A
VAL
37
n
49
VAL
37
A
LYS
38
n
50
LYS
38
A
SER
39
n
51
SER
39
A
ALA
40
n
52
ALA
40
A
GLN
41
n
53
GLN
41
A
GLY
42
n
54
GLY
42
A
ASP
43
n
55
ASP
43
A
ALA
44
n
56
ALA
44
A
LEU
45
n
57
LEU
45
A
PHE
46
n
58
PHE
46
A
MSE
47
n
59
MSE
47
A
LEU
48
n
60
LEU
48
A
THR
49
n
61
THR
49
A
LYS
50
n
62
LYS
50
A
ASP
51
n
63
ASP
51
A
MSE
52
n
64
MSE
52
A
ASN
53
n
65
ASN
53
A
GLN
54
n
66
GLN
54
A
GLY
55
n
67
GLY
55
A
SER
56
n
68
SER
56
A
TYR
57
n
69
TYR
57
A
GLN
58
n
70
GLN
58
A
ARG
59
n
71
ARG
59
A
PRO
60
n
72
PRO
60
A
PRO
61
n
73
PRO
61
A
SER
62
n
74
SER
62
A
LEU
63
n
75
LEU
63
A
GLN
64
n
76
GLN
64
A
ASP
65
n
77
ASP
65
A
GLY
66
n
78
GLY
66
A
LYS
67
n
79
LYS
67
A
ASN
68
n
80
ASN
68
A
TYR
69
n
81
TYR
69
A
GLN
70
n
82
GLN
70
A
ASN
71
n
83
ASN
71
A
TRP
72
n
84
TRP
72
A
GLN
73
n
85
GLN
73
A
THR
74
n
86
THR
74
A
HIS
75
n
87
HIS
75
A
THR
76
n
88
THR
76
A
VAL
77
n
89
VAL
77
A
GLU
78
n
90
GLU
78
A
LEU
79
n
91
LEU
79
A
VAL
80
n
92
VAL
80
A
SER
81
n
93
SER
81
A
TYR
82
n
94
TYR
82
A
PRO
83
n
95
PRO
83
A
CYS
84
n
96
CYS
84
A
GLU
85
n
97
GLU
85
A
MSE
86
n
98
MSE
86
A
ASP
87
n
99
ASP
87
A
ASP
88
n
100
ASP
88
A
LYS
89
n
101
LYS
89
A
ALA
90
n
102
ALA
90
A
ALA
91
n
103
ALA
91
A
VAL
92
n
104
VAL
92
A
GLU
93
n
105
GLU
93
A
THR
94
n
106
THR
94
A
ARG
95
n
107
ARG
95
A
LYS
96
n
108
LYS
96
A
GLN
97
n
109
GLN
97
A
ALA
98
n
110
ALA
98
A
MSE
99
n
111
MSE
99
A
LEU
100
n
112
LEU
100
A
TRP
101
n
113
TRP
101
A
LEU
102
n
114
LEU
102
A
ALA
103
n
115
ALA
103
A
THR
104
n
116
THR
104
A
HIS
105
n
117
HIS
105
A
PHE
106
n
118
PHE
106
A
THR
107
n
119
THR
107
A
THR
108
n
120
THR
108
A
HIS
109
n
121
HIS
109
A
ILE
110
n
122
ILE
110
A
ASP
111
n
123
ASP
111
A
GLN
112
n
124
GLN
112
A
SER
113
n
125
SER
113
A
ASN
114
n
126
ASN
114
A
HIS
115
n
127
HIS
115
A
GLN
116
n
128
GLN
116
A
PRO
117
n
129
PRO
117
A
LEU
118
n
130
LEU
118
A
ALA
119
n
131
ALA
119
A
PRO
120
n
132
PRO
120
A
ILE
121
n
133
ILE
121
A
GLN
122
n
134
GLN
122
A
SER
123
n
135
SER
123
A
GLU
124
n
136
GLU
124
A
ASP
125
n
137
ASP
125
A
GLY
126
n
138
GLY
126
A
ARG
127
n
139
ARG
127
A
PHE
128
n
140
PHE
128
A
VAL
129
n
141
VAL
129
A
ILE
130
n
142
ILE
130
A
GLU
131
n
143
GLU
131
A
ILE
132
n
144
ILE
132
A
THR
133
n
145
THR
133
A
ASN
134
n
146
ASN
134
A
ALA
135
n
147
ALA
135
A
LYS
136
n
148
LYS
136
A
HIS
137
n
149
HIS
137
A
VAL
138
n
150
VAL
138
A
ILE
139
n
151
ILE
139
A
ALA
140
n
152
ALA
140
A
ALA
141
n
153
ALA
141
A
GLY
142
n
154
GLY
142
A
ASN
143
n
155
ASN
143
A
GLY
144
n
156
GLY
144
A
ILE
145
n
157
ILE
145
A
SER
146
n
158
SER
146
A
ALA
147
n
159
ALA
147
A
GLU
148
n
160
GLU
148
A
SER
149
n
161
SER
149
A
GLN
150
n
162
GLN
150
A
GLY
151
n
163
GLY
151
A
GLN
152
n
164
GLN
152
A
THR
153
n
165
THR
153
A
ILE
154
n
166
ILE
154
A
THR
155
n
167
THR
155
A
MSE
156
n
168
MSE
156
A
THR
157
n
169
THR
157
A
PRO
158
n
170
PRO
158
A
SER
159
n
171
SER
159
A
GLY
160
n
172
GLY
160
A
GLN
161
n
173
GLN
161
A
GLN
162
n
174
GLN
162
A
ALA
163
n
175
ALA
163
A
THR
164
n
176
THR
164
A
VAL
165
n
177
VAL
165
A
GLY
166
n
178
GLY
166
A
VAL
167
n
179
VAL
167
A
ALA
168
n
180
ALA
168
A
ALA
169
n
181
ALA
169
A
LYS
170
n
182
LYS
170
A
GLY
171
n
183
GLY
171
A
PHE
172
n
184
PHE
172
A
GLY
173
n
185
GLY
173
A
THR
174
n
186
THR
174
A
SER
175
n
187
SER
175
A
ALA
176
n
188
ALA
176
A
THR
177
n
189
THR
177
A
PRO
178
n
190
PRO
178
A
GLU
179
n
191
GLU
179
A
LEU
180
n
192
LEU
180
A
ARG
181
n
193
ARG
181
A
LEU
182
n
194
LEU
182
A
LEU
183
n
195
LEU
183
A
GLU
184
n
196
GLU
184
A
SER
185
n
197
SER
185
A
ALA
186
n
198
ALA
186
A
PRO
187
n
199
PRO
187
A
TRP
188
n
200
TRP
188
A
TYR
189
n
201
TYR
189
A
GLN
190
n
202
GLN
190
A
LYS
191
n
203
LYS
191
A
SER
192
n
204
SER
192
A
LEU
193
n
205
LEU
193
A
LYS
194
n
206
LYS
194
A
SER
195
n
207
SER
195
A
GLN
196
n
208
GLN
196
A
PHE
197
n
209
PHE
197
A
ALA
198
n
210
ALA
198
A
SER
199
n
211
SER
199
A
LEU
200
n
212
LEU
200
A
THR
201
n
213
THR
201
A
SER
202
n
214
SER
202
A
ALA
203
n
215
ALA
203
A
GLU
204
n
216
GLU
204
A
ASN
205
n
217
ASN
205
A
LEU
206
n
218
LEU
206
A
ASP
207
n
219
ASP
207
A
ASP
208
n
220
ASP
208
A
LYS
209
n
221
LYS
209
A
GLU
210
n
222
GLU
210
A
LEU
211
n
223
LEU
211
A
ALA
212
n
224
ALA
212
A
ALA
213
n
225
ALA
213
A
ASN
214
n
226
ASN
214
A
VAL
215
n
227
VAL
215
A
PHE
216
n
228
PHE
216
A
ALA
217
n
229
ALA
217
A
TYR
218
n
230
TYR
218
A
LEU
219
n
231
LEU
219
A
THR
220
n
232
THR
220
A
SER
221
n
233
SER
221
A
ILE
222
n
234
ILE
222
A
TYR
223
n
235
TYR
223
A
LEU
224
n
236
LEU
224
A
LYS
225
n
237
LYS
225
A
THR
226
n
238
THR
226
A
ALA
227
n
239
ALA
227
A
GLU
228
n
240
GLU
228
A
LEU
229
n
241
LEU
229
A
ALA
230
n
242
ALA
230
A
LYS
231
n
243
LYS
231
A
LYS
232
n
244
LYS
232
A
PHE
233
n
245
PHE
233
A
GLY
234
n
246
GLY
234
A
ILE
235
n
247
ILE
235
A
TYR
236
n
248
TYR
236
A
ILE
237
n
249
ILE
237
A
ASN
238
n
250
ASN
238
A
GLU
239
n
251
GLU
239
A
TRP
240
n
252
TRP
240
A
ASP
241
n
253
ASP
241
A
PRO
242
n
254
PRO
242
A
MSE
243
n
255
MSE
243
A
SER
244
n
256
SER
244
A
GLU
245
n
257
GLU
245
A
GLN
246
n
258
GLN
246
A
ILE
247
n
259
ILE
247
A
THR
248
n
260
THR
248
A
PRO
249
n
261
PRO
249
A
ASN
250
n
262
ASN
250
A
ALA
251
n
263
ALA
251
A
ASN
252
n
264
ASN
252
A
GLY
253
n
265
GLY
253
A
LEU
254
n
266
LEU
254
A
THR
255
n
267
THR
255
A
ASP
256
n
268
ASP
256
A
PRO
257
n
269
PRO
257
A
LYS
258
n
270
LYS
258
A
VAL
259
n
271
VAL
259
A
LYS
260
n
272
LYS
260
A
ASN
261
n
273
ASN
261
A
ALA
262
n
274
ALA
262
A
TRP
263
n
275
TRP
263
A
GLU
264
n
276
GLU
264
A
ILE
265
n
277
ILE
265
A
LEU
266
n
278
LEU
266
A
PRO
267
n
279
PRO
267
A
ARG
268
n
280
ARG
268
A
THR
269
n
281
THR
269
A
LYS
270
n
282
LYS
270
A
PRO
271
n
283
PRO
271
A
SER
272
n
284
SER
272
A
LYS
273
n
285
LYS
273
A
ILE
274
n
286
ILE
274
A
VAL
275
n
287
VAL
275
A
GLU
276
n
288
GLU
276
A
ILE
277
n
289
ILE
277
A
LEU
278
n
290
LEU
278
A
SER
279
n
291
SER
279
A
LYS
280
n
292
LYS
280
A
SER
281
n
293
SER
281
A
ASP
282
n
294
ASP
282
A
ALA
283
n
295
ALA
283
A
LYS
284
n
296
LYS
284
A
ALA
285
n
297
ALA
285
A
VAL
286
n
298
VAL
286
A
MSE
287
n
299
MSE
287
A
LYS
288
n
300
LYS
288
A
HIS
289
n
301
HIS
289
A
ILE
290
n
302
ILE
290
A
LYS
291
n
303
LYS
291
A
PRO
292
n
304
PRO
292
A
GLN
293
n
305
GLN
293
A
LEU
294
n
306
LEU
294
A
GLN
295
n
307
GLN
295
A
SER
296
n
308
SER
296
A
ARG
297
n
309
ARG
297
A
TYR
298
n
310
TYR
298
A
SER
299
n
311
SER
299
A
GLU
300
n
312
GLU
300
A
SER
301
n
313
SER
301
A
LEU
302
n
314
LEU
302
A
SER
303
n
315
SER
303
A
LYS
304
n
316
LYS
304
A
ASN
305
n
317
ASN
305
A
VAL
306
n
318
VAL
306
A
PHE
307
n
319
PHE
307
A
GLN
308
n
320
GLN
308
A
TYR
309
n
321
TYR
309
A
PHE
310
n
322
PHE
310
A
GLN
311
n
323
GLN
311
A
ASP
312
n
324
ASP
312
A
GLY
313
n
325
GLY
313
A
GLY
314
n
326
GLY
314
A
GLU
315
n
327
GLU
315
A
VAL
316
n
328
VAL
316
A
ALA
317
n
329
ALA
317
A
GLY
318
n
330
GLY
318
A
HIS
319
n
331
HIS
319
A
GLY
320
n
332
GLY
320
A
ILE
321
n
333
ILE
321
A
ASN
322
n
334
ASN
322
A
ASN
323
n
335
ASN
323
A
ALA
324
n
336
ALA
324
A
THR
325
n
337
THR
325
A
VAL
326
n
338
VAL
326
A
GLY
327
n
339
GLY
327
A
ASP
328
n
340
ASP
328
A
LYS
329
n
341
LYS
329
A
HIS
330
n
342
HIS
330
A
SER
331
n
343
SER
331
A
PRO
332
n
344
PRO
332
A
GLU
333
n
345
GLU
333
A
LEU
334
n
346
LEU
334
A
ALA
335
n
347
ALA
335
A
ILE
336
n
348
ILE
336
A
LEU
337
n
349
LEU
337
A
PHE
338
n
350
PHE
338
A
GLU
339
n
351
GLU
339
A
PHE
340
n
352
PHE
340
A
ARG
341
n
353
ARG
341
A
THR
342
n
354
THR
342
A
VAL
343
n
355
VAL
343
A
PRO
344
n
356
PRO
344
A
ASN
345
n
357
ASN
345
A
GLU
346
n
358
GLU
346
A
LEU
347
n
359
LEU
347
A
GLN
348
n
360
GLN
348
A
SER
349
n
361
SER
349
A
TYR
350
n
362
TYR
350
A
LEU
351
n
363
LEU
351
A
PRO
352
n
364
PRO
352
A
LYS
353
n
365
LYS
353
A
THR
354
n
366
THR
354
A
n
367
355
A
n
368
356
A
n
369
357
A
n
370
358
A
n
371
359
A
n
372
360
A
n
373
361
A
n
374
362
A
n
375
363
A
n
376
364
A
n
377
365
A
n
378
366
A
n
379
367
A
n
380
368
A
n
381
369
A
n
382
370
A
n
383
371
A
n
384
372
A
n
385
373
A
n
386
374
A
n
387
375
A
n
388
376
A
n
389
377
A
n
390
378
A
n
391
379
A
n
392
380
A
n
393
381
A
n
394
382
A
n
395
383
A
n
396
384
A
0.1490
0.0302
-0.0092
0.0000
-0.0820
0.0000
0.0004
0.0013
0.0007
0.0040
-0.0005
-0.0003
0.0021
-0.0008
0.0001
0.0019
-0.0009
-0.0011
0.0094
0.0035
0.0045
refined
34.9854
85.2508
8.3804
X-RAY DIFFRACTION
2.5381
-0.1072
-0.0923
0.0000
0.3158
0.0000
0.0077
-0.0053
-0.0389
0.0329
0.0165
0.0088
0.0015
-0.0346
-0.0242
-0.0762
-0.0534
0.0024
0.0383
-0.0010
0.0092
refined
42.1127
90.5301
9.7313
X-RAY DIFFRACTION
0.4076
0.5694
0.4568
0.4955
0.4870
0.9341
-0.0008
0.0185
-0.0156
-0.0158
-0.0056
0.0077
-0.0009
-0.0104
0.0064
-0.0591
0.0487
-0.0636
0.0507
-0.0819
0.0236
refined
55.1245
87.4681
-8.0717
X-RAY DIFFRACTION
0.4154
-1.1413
0.6122
0.3304
-0.2086
1.1583
-0.0001
-0.0492
0.0145
-0.0013
-0.0083
-0.0134
-0.0046
-0.0629
0.0083
-0.0704
-0.0132
0.0467
0.0501
-0.0338
-0.0051
refined
44.8781
98.6148
11.8132
X-RAY DIFFRACTION
1.5100
-0.8149
0.2001
0.0002
0.5904
0.0000
0.0070
-0.0235
-0.0217
0.0072
-0.0128
-0.0032
-0.0011
0.0040
0.0058
-0.0291
0.0054
-0.0496
0.0225
-0.0584
0.0103
refined
54.7848
92.8268
9.1320
X-RAY DIFFRACTION
0.8305
-0.1464
2.3296
0.2844
-1.1314
1.3005
0.0041
-0.0049
0.0278
-0.0066
-0.0115
-0.0127
-0.0028
-0.0286
0.0074
-0.0604
0.0368
0.0285
0.0293
0.0432
-0.0175
refined
43.3511
99.7839
0.6172
X-RAY DIFFRACTION
0.8541
-0.4275
-0.7434
0.0000
0.1644
0.8466
0.0030
-0.0040
0.0104
-0.0066
-0.0023
0.0115
0.0030
0.0078
-0.0007
-0.1319
0.0476
0.0486
0.1625
0.0160
-0.0282
refined
10.0810
91.3101
12.9354
X-RAY DIFFRACTION
2.1316
-1.6644
1.2502
0.2171
-1.4322
0.2238
0.0101
-0.0041
-0.0024
0.0200
-0.0217
0.0056
0.0180
-0.0063
0.0116
-0.1058
0.0799
0.0084
0.1199
0.0699
-0.0246
refined
10.9281
85.0554
6.3434
X-RAY DIFFRACTION
1.0961
-0.4344
-0.6758
0.0173
0.7723
0.1146
-0.0008
-0.0004
-0.0183
-0.0023
-0.0018
-0.0080
0.0108
0.0135
0.0026
-0.0726
0.1362
0.0125
0.1075
0.0459
-0.0339
refined
20.0079
85.1268
-8.5924
X-RAY DIFFRACTION
1.1891
-0.9801
-0.7863
0.0000
-0.9087
0.9083
0.0065
0.0056
-0.0255
0.0155
-0.0195
0.0082
0.0450
-0.0106
0.0130
-0.0703
0.0998
0.0214
0.1128
0.0968
-0.0403
refined
12.0559
77.9882
4.7985
X-RAY DIFFRACTION
1.2825
-0.4993
0.0848
0.0000
-0.8121
0.0000
0.0047
0.0220
-0.0024
0.0174
-0.0071
-0.0054
0.0153
-0.0056
0.0024
-0.0285
0.0417
-0.0183
0.0828
0.0629
-0.0493
refined
26.2987
84.5268
15.6485
X-RAY DIFFRACTION
0.1073
-0.1232
0.0522
0.0152
-0.0113
0.0784
-0.0003
-0.0020
0.0016
-0.0010
0.0013
0.0010
-0.0047
-0.0014
-0.0010
-0.0143
0.0247
0.0022
0.0244
0.0067
-0.0027
refined
31.2556
104.1530
9.8240
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
A 10 A 17
X-RAY DIFFRACTION
2
A 18 A 63
X-RAY DIFFRACTION
3
A 64 A 88
X-RAY DIFFRACTION
4
A 89 A 126
X-RAY DIFFRACTION
5
A 127 A 153
X-RAY DIFFRACTION
6
A 154 A 180
X-RAY DIFFRACTION
7
A 181 A 216
X-RAY DIFFRACTION
8
A 217 A 246
X-RAY DIFFRACTION
9
A 247 A 279
X-RAY DIFFRACTION
10
A 280 A 329
X-RAY DIFFRACTION
11
A 330 A 353
X-RAY DIFFRACTION
12
A 354 A 354
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
3110
-8
29260
A
MSE
26
SELENOMETHIONINE
A
MSE
38
MET
A
MSE
47
SELENOMETHIONINE
A
MSE
59
MET
A
MSE
52
SELENOMETHIONINE
A
MSE
64
MET
A
MSE
86
SELENOMETHIONINE
A
MSE
98
MET
A
MSE
99
SELENOMETHIONINE
A
MSE
111
MET
A
MSE
156
SELENOMETHIONINE
A
MSE
168
MET
A
MSE
243
SELENOMETHIONINE
A
MSE
255
MET
A
MSE
287
SELENOMETHIONINE
A
MSE
299
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_664
-y+1,-x+1,-z-1/4
crystal symmetry operation
128.0800000000
128.0800000000
-19.1300000000
A
O
VAL
138
A
O
VAL
150
A
N
ALA
25
A
N
ALA
37
A
N
MSE
26
A
N
MSE
38
A
O
GLN
73
A
O
GLN
85
A
O
THR
74
A
O
THR
86
A
N
GLN
54
A
N
GLN
66
A
O
LEU
48
A
O
LEU
60
A
N
GLY
35
A
N
GLY
47
A
N
TYR
36
A
N
TYR
48
A
O
GLU
131
A
O
GLU
143
A
N
PHE
8
A
N
PHE
20
A
O
GLY
327
A
O
GLY
339
A
N
VAL
326
A
N
VAL
338
A
O
GLU
333
A
O
GLU
345
A
O
GLU
339
A
O
GLU
351
A
N
LEU
266
A
N
LEU
278
A
O
GLY
166
A
O
GLY
178
A
N
SER
12
A
N
SER
24
A
N
ILE
13
A
N
ILE
25
A
O
CYS
84
A
O
CYS
96
1
A
ASN
-11
A
ASN
1
1
Y
1
A
ALA
-10
A
ALA
2
1
Y
1
A
GLN
-9
A
GLN
3
1
Y
1
A
PRO
-8
A
PRO
4
1
Y
1
A
ASN
-7
A
ASN
5
1
Y
1
A
LEU
-6
A
LEU
6
1
Y
1
A
GLY
-5
A
GLY
7
1
Y
1
A
ARG
-4
A
ARG
8
1
Y
1
A
SER
-3
A
SER
9
1
Y
1
A
GLU
355
A
GLU
367
1
Y
1
A
SER
356
A
SER
368
1
Y
1
A
THR
357
A
THR
369
1
Y
1
A
THR
358
A
THR
370
1
Y
1
A
LYS
359
A
LYS
371
1
Y
1
A
SER
360
A
SER
372
1
Y
1
A
GLU
361
A
GLU
373
1
Y
1
A
VAL
362
A
VAL
374
1
Y
1
A
LYS
363
A
LYS
375
1
Y
1
A
LEU
364
A
LEU
376
1
Y
1
A
LEU
365
A
LEU
377
1
Y
1
A
ASP
366
A
ASP
378
1
Y
1
A
GLN
367
A
GLN
379
1
Y
1
A
PHE
368
A
PHE
380
1
Y
1
A
ASP
369
A
ASP
381
1
Y
1
A
PRO
370
A
PRO
382
1
Y
1
A
MSE
371
A
MSE
383
1
Y
1
A
LYS
372
A
LYS
384
1
Y
1
A
ARG
373
A
ARG
385
1
Y
1
A
LYS
374
A
LYS
386
1
Y
1
A
THR
375
A
THR
387
1
Y
1
A
VAL
376
A
VAL
388
1
Y
1
A
ILE
377
A
ILE
389
1
Y
1
A
GLN
378
A
GLN
390
1
Y
1
A
GLN
379
A
GLN
391
1
Y
1
A
VAL
380
A
VAL
392
1
Y
1
A
GLU
381
A
GLU
393
1
Y
1
A
SER
382
A
SER
394
1
Y
1
A
LEU
383
A
LEU
395
1
Y
1
A
VAL
384
A
VAL
396
1
Y
1
A
LYS
10
-127.75
-57.51
1
A
ASP
51
-117.03
-94.63
1
A
ASN
68
-50.11
-80.91
1
A
ASN
68
-52.31
-78.58
1
A
SER
175
52.85
19.00
1
A
ASN
238
52.07
-118.31
1
A
GLU
264
70.01
-58.49
1
A
ALA
317
-154.71
67.08
1
A
HIS
319
-39.35
111.31
62.24
-10.00660
0.00000
0.00000
-10.00660
0.00000
20.01310
0.920
0.910
0.213
0.187
0.188
2.50
45.86
1154
22605
22605
5.110
RANDOM
1
THROUGHOUT
0.000
SAD
Engh & Huber
0.34
2.50
45.86
160
2935
6
0
2769
0.010
2857
HARMONIC
2.000
1.18
3882
HARMONIC
2.000
985
SINUSOIDAL
2.000
81
HARMONIC
2.000
408
HARMONIC
5.000
2857
HARMONIC
20.000
2.96
20.15
0
384
SEMIHARMONIC
5.00
0
3396
SEMIHARMONIC
4.00
0.2900
0.2109
0.2146
2.62
144
2810
2954
11
4.87
64.05
2.500
49.100
4DTD
22710
0.000
0.07000
1
27.2000
17.300
100.0
0.56000
2.50
2.63
5.000
1
17.00
99.5
refinement
BUSTER
2.9.2
VgrG protein
Structure and functional characterization of a Vibrio cholerae toxin from the MARTX/VgrG family.
1
N
N
2
N
N
3
N
N
A
PRO
60
A
PRO
72
HELX_P
A
GLN
64
A
GLN
76
5
1
5
A
ASP
88
A
ASP
100
HELX_P
A
SER
113
A
SER
125
1
2
26
A
LYS
170
A
LYS
182
HELX_P
A
PHE
172
A
PHE
184
5
3
3
A
THR
177
A
THR
189
HELX_P
A
SER
185
A
SER
197
1
4
9
A
SER
192
A
SER
204
HELX_P
A
THR
201
A
THR
213
1
5
10
A
ASP
208
A
ASP
220
HELX_P
A
GLY
234
A
GLY
246
1
6
27
A
ASP
241
A
ASP
253
HELX_P
A
GLN
246
A
GLN
258
5
7
6
A
ASP
256
A
ASP
268
HELX_P
A
GLU
264
A
GLU
276
1
8
9
A
LYS
270
A
LYS
282
HELX_P
A
LEU
278
A
LEU
290
5
9
9
A
SER
279
A
SER
291
HELX_P
A
SER
296
A
SER
308
1
10
18
A
SER
299
A
SER
311
HELX_P
A
ASP
312
A
ASP
324
1
11
14
A
LEU
347
A
LEU
359
HELX_P
A
LEU
351
A
LEU
363
5
12
5
covale
1.318
A
ALA
25
A
C
ALA
37
1_555
A
MSE
26
A
N
MSE
38
1_555
covale
1.354
A
MSE
26
A
C
MSE
38
1_555
A
PRO
27
A
N
PRO
39
1_555
covale
1.321
A
PHE
46
A
C
PHE
58
1_555
A
MSE
47
A
N
MSE
59
1_555
covale
1.333
A
MSE
47
A
C
MSE
59
1_555
A
LEU
48
A
N
LEU
60
1_555
covale
1.328
A
ASP
51
A
C
ASP
63
1_555
A
MSE
52
A
N
MSE
64
1_555
covale
1.336
A
MSE
52
A
C
MSE
64
1_555
A
ASN
53
A
N
ASN
65
1_555
covale
1.344
A
GLU
85
A
C
GLU
97
1_555
A
MSE
86
A
N
MSE
98
1_555
covale
1.341
A
MSE
86
A
C
MSE
98
1_555
A
ASP
87
A
N
ASP
99
1_555
covale
1.342
A
ALA
98
A
C
ALA
110
1_555
A
MSE
99
A
N
MSE
111
1_555
covale
1.359
A
MSE
99
A
C
MSE
111
1_555
A
LEU
100
A
N
LEU
112
1_555
covale
1.352
A
THR
155
A
C
THR
167
1_555
A
MSE
156
A
N
MSE
168
1_555
covale
1.323
A
MSE
156
A
C
MSE
168
1_555
A
THR
157
A
N
THR
169
1_555
covale
1.350
A
PRO
242
A
C
PRO
254
1_555
A
MSE
243
A
N
MSE
255
1_555
covale
1.364
A
MSE
243
A
C
MSE
255
1_555
A
SER
244
A
N
SER
256
1_555
covale
1.336
A
VAL
286
A
C
VAL
298
1_555
A
MSE
287
A
N
MSE
299
1_555
covale
1.346
A
MSE
287
A
C
MSE
299
1_555
A
LYS
288
A
N
LYS
300
1_555
TOXIN
Alpha-Beta protein, Actin Crosslinking Domain (ACD), G-Actin, TOXIN
Q9KS45_VIBCH
UNP
1
716
Q9KS45
NAQPNLGRSTKATPDFPTHFPKSSIGIENELAGLVVAMPANSAQKFGYVKSAQGDALFMLTKDMNQGSYQRPPSLQDGKN
YQNWQTHTVELVSYPCEMDDKAAVETRKQAMLWLATHFTTHIDQSNHQPLAPIQSEDGRFVIEITNAKHVIAAGNGISAE
SQGQTITMTPSGQQATVGVAAKGFGTSATPELRLLESAPWYQKSLKSQFASLTSAENLDDKELAANVFAYLTSIYLKTAE
LAKKFGIYINEWDPMSEQITPNANGLTDPKVKNAWEILPRTKPSKIVEILSKSDAKAVMKHIKPQLQSRYSESLSKNVFQ
YFQDGGEVAGHGINNATVGDKHSPELAILFEFRTVPNELQSYLPKTESTTKSEVKLLDQFDPMKRKTVIQQVESLV
716
1111
4DTD
-11
384
Q9KS45
A
1
1
396
10
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
138
A
VAL
150
A
ALA
141
A
ALA
153
A
LEU
22
A
LEU
34
A
PRO
27
A
PRO
39
A
TRP
72
A
TRP
84
A
SER
81
A
SER
93
A
ALA
44
A
ALA
56
A
SER
56
A
SER
68
A
LYS
33
A
LYS
45
A
SER
39
A
SER
51
A
PHE
128
A
PHE
140
A
ILE
132
A
ILE
144
A
HIS
7
A
HIS
19
A
PHE
8
A
PHE
20
A
THR
325
A
THR
337
A
GLY
327
A
GLY
339
A
PRO
332
A
PRO
344
A
PHE
340
A
PHE
352
A
ILE
265
A
ILE
277
A
PRO
267
A
PRO
279
A
GLN
161
A
GLN
173
A
ALA
168
A
ALA
180
A
SER
11
A
SER
23
A
GLU
18
A
GLU
30
A
CYS
84
A
CYS
96
A
GLU
85
A
GLU
97
BINDING SITE FOR RESIDUE GOL A 401
Software
6
A
LYS
50
A
LYS
62
6
1_555
A
GLY
55
A
GLY
67
6
8_664
A
SER
56
A
SER
68
6
8_664
A
HIS
75
A
HIS
87
6
1_555
A
HOH
535
C
HOH
6
1_555
A
HOH
641
C
HOH
6
1_555
95
P 43 2 2