0.010262
0.005925
0.000000
0.000000
0.011850
0.000000
0.000000
0.000000
0.012291
0.00000
0.00000
0.00000
Ferguson, A.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
97.444
97.444
81.363
C18 H23 N3 O3 S
361.459
(5Z)-5-{2-[(3R)-3-aminopiperidin-1-yl]-3-(propan-2-yloxy)benzylidene}-1,3-thiazolidine-2,4-dione
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
N
N
3
N
O
N
4
N
S
N
5
N
C
N
6
N
N
N
7
N
O
N
8
N
C
N
9
N
N
N
10
N
O
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
C
N
17
N
C
N
18
N
C
N
19
N
C
N
20
R
C
N
21
N
C
N
22
N
C
N
23
N
C
N
24
N
C
N
25
N
C
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
N
N
50
S
C
N
51
N
C
N
52
N
O
N
53
N
C
N
54
N
O
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
N
N
63
S
C
N
64
N
C
N
65
N
O
N
66
N
C
N
67
N
C
N
68
N
C
N
69
N
N
N
70
N
C
N
71
N
N
N
72
N
N
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
R
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
S
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
S
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
N
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
O
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
N
C
Y
200
N
C
Y
201
N
N
Y
202
N
C
Y
203
N
C
Y
204
N
N
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
S
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
C
N
271
N
N
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
N
293
N
C
N
294
N
S
N
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
O
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
S
N
363
N
O
N
364
N
O
N
365
N
O
N
366
N
O
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
R
C
N
372
N
O
N
373
N
C
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
N
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
N
422
N
O
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
N
N
436
S
C
N
437
N
C
N
438
N
O
N
439
N
C
N
440
N
C
N
441
N
C
N
442
N
O
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
doub
N
12
N
sing
N
13
N
sing
N
14
N
doub
Y
15
N
doub
Y
16
N
sing
Y
17
N
sing
Y
18
N
doub
Y
19
N
sing
Y
20
N
doub
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
Z
doub
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
Y
199
N
sing
Y
200
N
doub
Y
201
N
doub
N
202
N
sing
Y
203
N
sing
N
204
N
sing
Y
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
Y
307
N
doub
Y
308
N
sing
Y
309
N
sing
N
310
N
sing
Y
311
N
doub
N
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
Y
380
N
doub
Y
381
N
sing
Y
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
Y
408
N
doub
Y
409
N
sing
Y
410
N
sing
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
22
4599
4604
10.1016/j.bmcl.2012.05.098
22727640
Discovery of novel benzylidene-1,3-thiazolidine-2,4-diones as potent and selective inhibitors of the PIM-1, PIM-2, and PIM-3 protein kinases.
2012
10.2210/pdb4dtk/pdb
pdb_00004dtk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
PIXEL
2012-02-06
DECTRIS PILATUS 6M
SAGITALLY FOCUSED Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
17-ID
APS
1.0
SYNCHROTRON
APS BEAMLINE 17-ID
31905.203
Serine/threonine-protein kinase pim-1
2.7.11.1
Kinase domain
1
man
polymer
62.068
1,2-ETHANEDIOL
7
syn
non-polymer
361.459
(5Z)-5-{2-[(3R)-3-aminopiperidin-1-yl]-3-(propan-2-yloxy)benzylidene}-1,3-thiazolidine-2,4-dione
1
syn
non-polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
202
nat
water
no
no
EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDW
FERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS
GALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRW
CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH
EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDW
FERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS
GALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRW
CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
PIM1
9606
Homo sapiens
562
Escherichia coli
1
3.50
64.81
VAPOR DIFFUSION, HANGING DROP
7.3
18% PEG 3350, 0.2 M Na2SO4, 6% ethylene glycol, 0.1 M Tris, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2012-07-11
1
1
2012-07-25
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-02-21
REL
REL
EDO
1,2-ETHANEDIOL
7LI
(5Z)-5-{2-[(3R)-3-aminopiperidin-1-yl]-3-(propan-2-yloxy)benzylidene}-1,3-thiazolidine-2,4-dione
SO4
SULFATE ION
HOH
water
EDO
1
2
EDO
EDO
401
A
EDO
2
2
EDO
EDO
402
A
EDO
3
2
EDO
EDO
403
A
EDO
4
2
EDO
EDO
404
A
EDO
5
2
EDO
EDO
405
A
EDO
6
2
EDO
EDO
406
A
EDO
7
2
EDO
EDO
407
A
7LI
1
3
7LI
7LI
408
A
SO4
1
4
SO4
SO4
409
A
SO4
2
4
SO4
SO4
410
A
HOH
1
5
HOH
HOH
501
A
HOH
2
5
HOH
HOH
502
A
HOH
3
5
HOH
HOH
503
A
HOH
4
5
HOH
HOH
504
A
HOH
5
5
HOH
HOH
505
A
HOH
6
5
HOH
HOH
506
A
HOH
7
5
HOH
HOH
507
A
HOH
8
5
HOH
HOH
508
A
HOH
9
5
HOH
HOH
509
A
HOH
10
5
HOH
HOH
510
A
HOH
11
5
HOH
HOH
511
A
HOH
12
5
HOH
HOH
512
A
HOH
13
5
HOH
HOH
513
A
HOH
14
5
HOH
HOH
514
A
HOH
15
5
HOH
HOH
515
A
HOH
16
5
HOH
HOH
516
A
HOH
17
5
HOH
HOH
517
A
HOH
18
5
HOH
HOH
518
A
HOH
19
5
HOH
HOH
519
A
HOH
20
5
HOH
HOH
520
A
HOH
21
5
HOH
HOH
521
A
HOH
22
5
HOH
HOH
522
A
HOH
23
5
HOH
HOH
523
A
HOH
24
5
HOH
HOH
524
A
HOH
25
5
HOH
HOH
525
A
HOH
26
5
HOH
HOH
526
A
HOH
27
5
HOH
HOH
527
A
HOH
28
5
HOH
HOH
528
A
HOH
29
5
HOH
HOH
529
A
HOH
30
5
HOH
HOH
530
A
HOH
31
5
HOH
HOH
531
A
HOH
32
5
HOH
HOH
532
A
HOH
33
5
HOH
HOH
533
A
HOH
34
5
HOH
HOH
534
A
HOH
35
5
HOH
HOH
535
A
HOH
36
5
HOH
HOH
536
A
HOH
37
5
HOH
HOH
537
A
HOH
38
5
HOH
HOH
538
A
HOH
39
5
HOH
HOH
539
A
HOH
40
5
HOH
HOH
540
A
HOH
41
5
HOH
HOH
541
A
HOH
42
5
HOH
HOH
542
A
HOH
43
5
HOH
HOH
543
A
HOH
44
5
HOH
HOH
544
A
HOH
45
5
HOH
HOH
545
A
HOH
46
5
HOH
HOH
546
A
HOH
47
5
HOH
HOH
547
A
HOH
48
5
HOH
HOH
548
A
HOH
49
5
HOH
HOH
549
A
HOH
50
5
HOH
HOH
550
A
HOH
51
5
HOH
HOH
551
A
HOH
52
5
HOH
HOH
552
A
HOH
53
5
HOH
HOH
553
A
HOH
54
5
HOH
HOH
554
A
HOH
55
5
HOH
HOH
555
A
HOH
56
5
HOH
HOH
556
A
HOH
57
5
HOH
HOH
557
A
HOH
58
5
HOH
HOH
558
A
HOH
59
5
HOH
HOH
559
A
HOH
60
5
HOH
HOH
560
A
HOH
61
5
HOH
HOH
561
A
HOH
62
5
HOH
HOH
562
A
HOH
63
5
HOH
HOH
563
A
HOH
64
5
HOH
HOH
564
A
HOH
65
5
HOH
HOH
565
A
HOH
66
5
HOH
HOH
566
A
HOH
67
5
HOH
HOH
567
A
HOH
68
5
HOH
HOH
568
A
HOH
69
5
HOH
HOH
569
A
HOH
70
5
HOH
HOH
570
A
HOH
71
5
HOH
HOH
571
A
HOH
72
5
HOH
HOH
572
A
HOH
73
5
HOH
HOH
573
A
HOH
74
5
HOH
HOH
574
A
HOH
75
5
HOH
HOH
575
A
HOH
76
5
HOH
HOH
576
A
HOH
77
5
HOH
HOH
577
A
HOH
78
5
HOH
HOH
578
A
HOH
79
5
HOH
HOH
579
A
HOH
80
5
HOH
HOH
580
A
HOH
81
5
HOH
HOH
581
A
HOH
82
5
HOH
HOH
582
A
HOH
83
5
HOH
HOH
583
A
HOH
84
5
HOH
HOH
584
A
HOH
85
5
HOH
HOH
585
A
HOH
86
5
HOH
HOH
586
A
HOH
87
5
HOH
HOH
587
A
HOH
88
5
HOH
HOH
588
A
HOH
89
5
HOH
HOH
589
A
HOH
90
5
HOH
HOH
590
A
HOH
91
5
HOH
HOH
591
A
HOH
92
5
HOH
HOH
592
A
HOH
93
5
HOH
HOH
593
A
HOH
94
5
HOH
HOH
594
A
HOH
95
5
HOH
HOH
595
A
HOH
96
5
HOH
HOH
596
A
HOH
97
5
HOH
HOH
597
A
HOH
98
5
HOH
HOH
598
A
HOH
99
5
HOH
HOH
599
A
HOH
100
5
HOH
HOH
600
A
HOH
101
5
HOH
HOH
601
A
HOH
102
5
HOH
HOH
602
A
HOH
103
5
HOH
HOH
603
A
HOH
104
5
HOH
HOH
604
A
HOH
105
5
HOH
HOH
605
A
HOH
106
5
HOH
HOH
606
A
HOH
107
5
HOH
HOH
607
A
HOH
108
5
HOH
HOH
608
A
HOH
109
5
HOH
HOH
609
A
HOH
110
5
HOH
HOH
610
A
HOH
111
5
HOH
HOH
611
A
HOH
112
5
HOH
HOH
612
A
HOH
113
5
HOH
HOH
613
A
HOH
114
5
HOH
HOH
614
A
HOH
115
5
HOH
HOH
615
A
HOH
116
5
HOH
HOH
616
A
HOH
117
5
HOH
HOH
617
A
HOH
118
5
HOH
HOH
618
A
HOH
119
5
HOH
HOH
619
A
HOH
120
5
HOH
HOH
620
A
HOH
121
5
HOH
HOH
621
A
HOH
122
5
HOH
HOH
622
A
HOH
123
5
HOH
HOH
623
A
HOH
124
5
HOH
HOH
624
A
HOH
125
5
HOH
HOH
625
A
HOH
126
5
HOH
HOH
626
A
HOH
127
5
HOH
HOH
627
A
HOH
128
5
HOH
HOH
628
A
HOH
129
5
HOH
HOH
629
A
HOH
130
5
HOH
HOH
630
A
HOH
131
5
HOH
HOH
631
A
HOH
132
5
HOH
HOH
632
A
HOH
133
5
HOH
HOH
633
A
HOH
134
5
HOH
HOH
634
A
HOH
135
5
HOH
HOH
635
A
HOH
136
5
HOH
HOH
636
A
HOH
137
5
HOH
HOH
637
A
HOH
138
5
HOH
HOH
638
A
HOH
139
5
HOH
HOH
639
A
HOH
140
5
HOH
HOH
640
A
HOH
141
5
HOH
HOH
641
A
HOH
142
5
HOH
HOH
642
A
HOH
143
5
HOH
HOH
643
A
HOH
144
5
HOH
HOH
644
A
HOH
145
5
HOH
HOH
645
A
HOH
146
5
HOH
HOH
646
A
HOH
147
5
HOH
HOH
647
A
HOH
148
5
HOH
HOH
648
A
HOH
149
5
HOH
HOH
649
A
HOH
150
5
HOH
HOH
650
A
HOH
151
5
HOH
HOH
651
A
HOH
152
5
HOH
HOH
652
A
HOH
153
5
HOH
HOH
653
A
HOH
154
5
HOH
HOH
654
A
HOH
155
5
HOH
HOH
655
A
HOH
156
5
HOH
HOH
656
A
HOH
157
5
HOH
HOH
657
A
HOH
158
5
HOH
HOH
658
A
HOH
159
5
HOH
HOH
659
A
HOH
160
5
HOH
HOH
660
A
HOH
161
5
HOH
HOH
661
A
HOH
162
5
HOH
HOH
662
A
HOH
163
5
HOH
HOH
663
A
HOH
164
5
HOH
HOH
664
A
HOH
165
5
HOH
HOH
665
A
HOH
166
5
HOH
HOH
666
A
HOH
167
5
HOH
HOH
667
A
HOH
168
5
HOH
HOH
668
A
HOH
169
5
HOH
HOH
669
A
HOH
170
5
HOH
HOH
670
A
HOH
171
5
HOH
HOH
671
A
HOH
172
5
HOH
HOH
672
A
HOH
173
5
HOH
HOH
673
A
HOH
174
5
HOH
HOH
674
A
HOH
175
5
HOH
HOH
675
A
HOH
176
5
HOH
HOH
676
A
HOH
177
5
HOH
HOH
677
A
HOH
178
5
HOH
HOH
678
A
HOH
179
5
HOH
HOH
679
A
HOH
180
5
HOH
HOH
680
A
HOH
181
5
HOH
HOH
681
A
HOH
182
5
HOH
HOH
682
A
HOH
183
5
HOH
HOH
683
A
HOH
184
5
HOH
HOH
684
A
HOH
185
5
HOH
HOH
685
A
HOH
186
5
HOH
HOH
686
A
HOH
187
5
HOH
HOH
687
A
HOH
188
5
HOH
HOH
688
A
HOH
189
5
HOH
HOH
689
A
HOH
190
5
HOH
HOH
690
A
HOH
191
5
HOH
HOH
691
A
HOH
192
5
HOH
HOH
692
A
HOH
193
5
HOH
HOH
693
A
HOH
194
5
HOH
HOH
694
A
HOH
195
5
HOH
HOH
695
A
HOH
196
5
HOH
HOH
696
A
HOH
197
5
HOH
HOH
697
A
HOH
198
5
HOH
HOH
698
A
HOH
199
5
HOH
HOH
699
A
HOH
200
5
HOH
HOH
700
A
HOH
201
5
HOH
HOH
701
A
HOH
202
5
HOH
HOH
702
A
n
1
30
A
n
2
31
A
n
3
32
A
PRO
33
n
4
PRO
33
A
LEU
34
n
5
LEU
34
A
GLU
35
n
6
GLU
35
A
SER
36
n
7
SER
36
A
GLN
37
n
8
GLN
37
A
TYR
38
n
9
TYR
38
A
GLN
39
n
10
GLN
39
A
VAL
40
n
11
VAL
40
A
GLY
41
n
12
GLY
41
A
PRO
42
n
13
PRO
42
A
LEU
43
n
14
LEU
43
A
LEU
44
n
15
LEU
44
A
GLY
45
n
16
GLY
45
A
SER
46
n
17
SER
46
A
GLY
47
n
18
GLY
47
A
GLY
48
n
19
GLY
48
A
PHE
49
n
20
PHE
49
A
GLY
50
n
21
GLY
50
A
SER
51
n
22
SER
51
A
VAL
52
n
23
VAL
52
A
TYR
53
n
24
TYR
53
A
SER
54
n
25
SER
54
A
GLY
55
n
26
GLY
55
A
ILE
56
n
27
ILE
56
A
ARG
57
n
28
ARG
57
A
VAL
58
n
29
VAL
58
A
SER
59
n
30
SER
59
A
ASP
60
n
31
ASP
60
A
ASN
61
n
32
ASN
61
A
LEU
62
n
33
LEU
62
A
PRO
63
n
34
PRO
63
A
VAL
64
n
35
VAL
64
A
ALA
65
n
36
ALA
65
A
ILE
66
n
37
ILE
66
A
LYS
67
n
38
LYS
67
A
HIS
68
n
39
HIS
68
A
VAL
69
n
40
VAL
69
A
GLU
70
n
41
GLU
70
A
LYS
71
n
42
LYS
71
A
ASP
72
n
43
ASP
72
A
ARG
73
n
44
ARG
73
A
ILE
74
n
45
ILE
74
A
SER
75
n
46
SER
75
A
ASP
76
n
47
ASP
76
A
TRP
77
n
48
TRP
77
A
GLY
78
n
49
GLY
78
A
GLU
79
n
50
GLU
79
A
LEU
80
n
51
LEU
80
A
PRO
81
n
52
PRO
81
A
ASN
82
n
53
ASN
82
A
GLY
83
n
54
GLY
83
A
THR
84
n
55
THR
84
A
ARG
85
n
56
ARG
85
A
VAL
86
n
57
VAL
86
A
PRO
87
n
58
PRO
87
A
MET
88
n
59
MET
88
A
GLU
89
n
60
GLU
89
A
VAL
90
n
61
VAL
90
A
VAL
91
n
62
VAL
91
A
LEU
92
n
63
LEU
92
A
LEU
93
n
64
LEU
93
A
LYS
94
n
65
LYS
94
A
LYS
95
n
66
LYS
95
A
VAL
96
n
67
VAL
96
A
SER
97
n
68
SER
97
A
SER
98
n
69
SER
98
A
GLY
99
n
70
GLY
99
A
PHE
100
n
71
PHE
100
A
SER
101
n
72
SER
101
A
GLY
102
n
73
GLY
102
A
VAL
103
n
74
VAL
103
A
ILE
104
n
75
ILE
104
A
ARG
105
n
76
ARG
105
A
LEU
106
n
77
LEU
106
A
LEU
107
n
78
LEU
107
A
ASP
108
n
79
ASP
108
A
TRP
109
n
80
TRP
109
A
PHE
110
n
81
PHE
110
A
GLU
111
n
82
GLU
111
A
ARG
112
n
83
ARG
112
A
PRO
113
n
84
PRO
113
A
ASP
114
n
85
ASP
114
A
SER
115
n
86
SER
115
A
PHE
116
n
87
PHE
116
A
VAL
117
n
88
VAL
117
A
LEU
118
n
89
LEU
118
A
ILE
119
n
90
ILE
119
A
LEU
120
n
91
LEU
120
A
GLU
121
n
92
GLU
121
A
ARG
122
n
93
ARG
122
A
PRO
123
n
94
PRO
123
A
GLU
124
n
95
GLU
124
A
PRO
125
n
96
PRO
125
A
VAL
126
n
97
VAL
126
A
GLN
127
n
98
GLN
127
A
ASP
128
n
99
ASP
128
A
LEU
129
n
100
LEU
129
A
PHE
130
n
101
PHE
130
A
ASP
131
n
102
ASP
131
A
PHE
132
n
103
PHE
132
A
ILE
133
n
104
ILE
133
A
THR
134
n
105
THR
134
A
GLU
135
n
106
GLU
135
A
ARG
136
n
107
ARG
136
A
GLY
137
n
108
GLY
137
A
ALA
138
n
109
ALA
138
A
LEU
139
n
110
LEU
139
A
GLN
140
n
111
GLN
140
A
GLU
141
n
112
GLU
141
A
GLU
142
n
113
GLU
142
A
LEU
143
n
114
LEU
143
A
ALA
144
n
115
ALA
144
A
ARG
145
n
116
ARG
145
A
SER
146
n
117
SER
146
A
PHE
147
n
118
PHE
147
A
PHE
148
n
119
PHE
148
A
TRP
149
n
120
TRP
149
A
GLN
150
n
121
GLN
150
A
VAL
151
n
122
VAL
151
A
LEU
152
n
123
LEU
152
A
GLU
153
n
124
GLU
153
A
ALA
154
n
125
ALA
154
A
VAL
155
n
126
VAL
155
A
ARG
156
n
127
ARG
156
A
HIS
157
n
128
HIS
157
A
CYS
158
n
129
CYS
158
A
HIS
159
n
130
HIS
159
A
ASN
160
n
131
ASN
160
A
CYS
161
n
132
CYS
161
A
GLY
162
n
133
GLY
162
A
VAL
163
n
134
VAL
163
A
LEU
164
n
135
LEU
164
A
HIS
165
n
136
HIS
165
A
ARG
166
n
137
ARG
166
A
ASP
167
n
138
ASP
167
A
ILE
168
n
139
ILE
168
A
LYS
169
n
140
LYS
169
A
ASP
170
n
141
ASP
170
A
GLU
171
n
142
GLU
171
A
ASN
172
n
143
ASN
172
A
ILE
173
n
144
ILE
173
A
LEU
174
n
145
LEU
174
A
ILE
175
n
146
ILE
175
A
ASP
176
n
147
ASP
176
A
LEU
177
n
148
LEU
177
A
ASN
178
n
149
ASN
178
A
ARG
179
n
150
ARG
179
A
GLY
180
n
151
GLY
180
A
GLU
181
n
152
GLU
181
A
LEU
182
n
153
LEU
182
A
LYS
183
n
154
LYS
183
A
LEU
184
n
155
LEU
184
A
ILE
185
n
156
ILE
185
A
ASP
186
n
157
ASP
186
A
PHE
187
n
158
PHE
187
A
GLY
188
n
159
GLY
188
A
SER
189
n
160
SER
189
A
GLY
190
n
161
GLY
190
A
ALA
191
n
162
ALA
191
A
LEU
192
n
163
LEU
192
A
LEU
193
n
164
LEU
193
A
LYS
194
n
165
LYS
194
A
ASP
195
n
166
ASP
195
A
THR
196
n
167
THR
196
A
VAL
197
n
168
VAL
197
A
TYR
198
n
169
TYR
198
A
THR
199
n
170
THR
199
A
ASP
200
n
171
ASP
200
A
PHE
201
n
172
PHE
201
A
ASP
202
n
173
ASP
202
A
GLY
203
n
174
GLY
203
A
THR
204
n
175
THR
204
A
ARG
205
n
176
ARG
205
A
VAL
206
n
177
VAL
206
A
TYR
207
n
178
TYR
207
A
SER
208
n
179
SER
208
A
PRO
209
n
180
PRO
209
A
PRO
210
n
181
PRO
210
A
GLU
211
n
182
GLU
211
A
TRP
212
n
183
TRP
212
A
ILE
213
n
184
ILE
213
A
ARG
214
n
185
ARG
214
A
TYR
215
n
186
TYR
215
A
HIS
216
n
187
HIS
216
A
ARG
217
n
188
ARG
217
A
TYR
218
n
189
TYR
218
A
HIS
219
n
190
HIS
219
A
GLY
220
n
191
GLY
220
A
ARG
221
n
192
ARG
221
A
SER
222
n
193
SER
222
A
ALA
223
n
194
ALA
223
A
ALA
224
n
195
ALA
224
A
VAL
225
n
196
VAL
225
A
TRP
226
n
197
TRP
226
A
SER
227
n
198
SER
227
A
LEU
228
n
199
LEU
228
A
GLY
229
n
200
GLY
229
A
ILE
230
n
201
ILE
230
A
LEU
231
n
202
LEU
231
A
LEU
232
n
203
LEU
232
A
TYR
233
n
204
TYR
233
A
ASP
234
n
205
ASP
234
A
MET
235
n
206
MET
235
A
VAL
236
n
207
VAL
236
A
CYS
237
n
208
CYS
237
A
GLY
238
n
209
GLY
238
A
ASP
239
n
210
ASP
239
A
ILE
240
n
211
ILE
240
A
PRO
241
n
212
PRO
241
A
PHE
242
n
213
PHE
242
A
GLU
243
n
214
GLU
243
A
HIS
244
n
215
HIS
244
A
ASP
245
n
216
ASP
245
A
GLU
246
n
217
GLU
246
A
GLU
247
n
218
GLU
247
A
ILE
248
n
219
ILE
248
A
ILE
249
n
220
ILE
249
A
ARG
250
n
221
ARG
250
A
GLY
251
n
222
GLY
251
A
GLN
252
n
223
GLN
252
A
VAL
253
n
224
VAL
253
A
PHE
254
n
225
PHE
254
A
PHE
255
n
226
PHE
255
A
ARG
256
n
227
ARG
256
A
GLN
257
n
228
GLN
257
A
ARG
258
n
229
ARG
258
A
VAL
259
n
230
VAL
259
A
SER
260
n
231
SER
260
A
SER
261
n
232
SER
261
A
GLU
262
n
233
GLU
262
A
CYS
263
n
234
CYS
263
A
GLN
264
n
235
GLN
264
A
HIS
265
n
236
HIS
265
A
LEU
266
n
237
LEU
266
A
ILE
267
n
238
ILE
267
A
ARG
268
n
239
ARG
268
A
TRP
269
n
240
TRP
269
A
CYS
270
n
241
CYS
270
A
LEU
271
n
242
LEU
271
A
ALA
272
n
243
ALA
272
A
LEU
273
n
244
LEU
273
A
ARG
274
n
245
ARG
274
A
PRO
275
n
246
PRO
275
A
SER
276
n
247
SER
276
A
ASP
277
n
248
ASP
277
A
ARG
278
n
249
ARG
278
A
PRO
279
n
250
PRO
279
A
THR
280
n
251
THR
280
A
PHE
281
n
252
PHE
281
A
GLU
282
n
253
GLU
282
A
GLU
283
n
254
GLU
283
A
ILE
284
n
255
ILE
284
A
GLN
285
n
256
GLN
285
A
ASN
286
n
257
ASN
286
A
HIS
287
n
258
HIS
287
A
PRO
288
n
259
PRO
288
A
TRP
289
n
260
TRP
289
A
MET
290
n
261
MET
290
A
GLN
291
n
262
GLN
291
A
ASP
292
n
263
ASP
292
A
VAL
293
n
264
VAL
293
A
LEU
294
n
265
LEU
294
A
LEU
295
n
266
LEU
295
A
PRO
296
n
267
PRO
296
A
GLN
297
n
268
GLN
297
A
GLU
298
n
269
GLU
298
A
THR
299
n
270
THR
299
A
ALA
300
n
271
ALA
300
A
GLU
301
n
272
GLU
301
A
ILE
302
n
273
ILE
302
A
HIS
303
n
274
HIS
303
A
LEU
304
n
275
LEU
304
A
HIS
305
n
276
HIS
305
A
1.2192
0.1363
0.4241
1.4035
0.2155
1.9259
0.0571
-0.0935
-0.0268
-0.0531
0.0369
-0.0907
-0.2535
0.1731
-0.0940
-0.0901
-0.0202
0.0560
-0.0380
0.0062
-0.0876
refined
8.3541
-40.3789
0.3822
X-RAY DIFFRACTION
A
33
A
305
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
44
A
N
LEU
15
A
O
VAL
52
A
O
VAL
23
A
N
TYR
53
A
N
TYR
24
A
O
ILE
66
A
O
ILE
37
A
N
LYS
67
A
N
LYS
38
A
O
LEU
118
A
O
LEU
89
A
O
ILE
119
A
O
ILE
90
A
N
ASP
108
A
N
ASP
79
A
N
GLY
78
A
N
GLY
49
A
O
VAL
86
A
O
VAL
57
A
N
GLN
127
A
N
GLN
98
A
O
ILE
175
A
O
ILE
146
A
N
ASP
176
A
N
ASP
147
A
O
GLU
181
A
O
GLU
152
A
N
LEU
164
A
N
LEU
135
A
O
ALA
191
A
O
ALA
162
1
A
GLU
30
A
GLU
1
1
Y
1
A
LYS
31
A
LYS
2
1
Y
1
A
GLU
32
A
GLU
3
1
Y
1
A
ASP
167
-148.19
44.34
1
A
ASP
186
63.23
87.87
1
A
ASP
202
-140.52
26.77
47.71
-2.0391
0.0000
0.0000
-2.0391
0.0000
4.0782
0.9679
0.9614
0.1819
0.1648
0.1656
0.1656
1.86
26.05
1830
36649
36649
4.99
99.31
0.094
RANDOM
1
THROUGHOUT
0.0
0
MOLECULAR REPLACEMENT
Engh & Huber
0.230
1.86
26.05
202
2489
63
0
2224
0.010
2346
HARMONIC
2.00
0.93
3174
HARMONIC
2.00
814
SINUSOIDAL
2.00
58
HARMONIC
2.00
354
HARMONIC
5.00
2346
HARMONIC
20.00
3.06
15.51
280
SEMIHARMONIC
5.00
2800
SEMIHARMONIC
4.00
0.2616
0.2459
0.2467
1.91
143
2704
2847
18
5.02
99.31
41.28
1.86
84.39
4DTK
36683
36683
0
0
0.059
1
10.2
99.7
1.86
1.96
1
10.5
99.3
data collection
ADSC
Quantum
phasing
MOLREP
refinement
BUSTER
2.11.2
data reduction
XDS
data scaling
SCALA
Novel and selective pan-PIM kinase inhibitor
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
A
PRO
33
A
PRO
4
HELX_P
A
GLN
37
A
GLN
8
1
1
5
A
ASP
72
A
ASP
43
HELX_P
A
ILE
74
A
ILE
45
5
2
3
A
MET
88
A
MET
59
HELX_P
A
SER
97
A
SER
68
1
3
10
A
LEU
129
A
LEU
100
HELX_P
A
GLY
137
A
GLY
108
1
4
9
A
GLN
140
A
GLN
111
HELX_P
A
CYS
161
A
CYS
132
1
5
22
A
LYS
169
A
LYS
140
HELX_P
A
GLU
171
A
GLU
142
5
6
3
A
THR
204
A
THR
175
HELX_P
A
SER
208
A
SER
179
5
7
5
A
PRO
209
A
PRO
180
HELX_P
A
HIS
216
A
HIS
187
1
8
8
A
HIS
219
A
HIS
190
HELX_P
A
GLY
238
A
GLY
209
1
9
20
A
HIS
244
A
HIS
215
HELX_P
A
GLY
251
A
GLY
222
1
10
8
A
SER
260
A
SER
231
HELX_P
A
LEU
271
A
LEU
242
1
11
12
A
ARG
274
A
ARG
245
HELX_P
A
ARG
278
A
ARG
249
5
12
5
A
THR
280
A
THR
251
HELX_P
A
ASN
286
A
ASN
257
1
13
7
A
HIS
287
A
HIS
258
HELX_P
A
GLN
291
A
GLN
262
5
14
5
A
LEU
295
A
LEU
266
HELX_P
A
LEU
304
A
LEU
275
1
15
10
TRANSFERASE/TRANSFERASE INHIBITOR
PIM1, Kinase, TRANSFERASE-TRANSFERASE INHIBITOR complex
A
GLU
124
A
GLU
95
1
A
PRO
125
A
PRO
96
-3.00
PIM1_HUMAN
UNP
1
121
P11309
EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDW
FERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGS
GALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRW
CLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH
121
396
4DTK
30
305
P11309
A
1
1
276
5
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
38
A
TYR
9
A
GLY
47
A
GLY
18
A
GLY
50
A
GLY
21
A
ARG
57
A
ARG
28
A
PRO
63
A
PRO
34
A
GLU
70
A
GLU
41
A
SER
115
A
SER
86
A
GLU
121
A
GLU
92
A
LEU
106
A
LEU
77
A
GLU
111
A
GLU
82
A
TRP
77
A
TRP
48
A
GLU
79
A
GLU
50
A
ARG
85
A
ARG
56
A
PRO
87
A
PRO
58
A
VAL
126
A
VAL
97
A
ASP
128
A
ASP
99
A
ILE
173
A
ILE
144
A
ASP
176
A
ASP
147
A
GLU
181
A
GLU
152
A
LEU
184
A
LEU
155
A
VAL
163
A
VAL
134
A
LEU
164
A
LEU
135
A
ALA
191
A
ALA
162
A
LEU
192
A
LEU
163
BINDING SITE FOR RESIDUE EDO A 401
A
EDO
401
Software
6
BINDING SITE FOR RESIDUE EDO A 402
A
EDO
402
Software
2
BINDING SITE FOR RESIDUE EDO A 403
A
EDO
403
Software
5
BINDING SITE FOR RESIDUE EDO A 404
A
EDO
404
Software
6
BINDING SITE FOR RESIDUE EDO A 405
A
EDO
405
Software
6
BINDING SITE FOR RESIDUE EDO A 406
A
EDO
406
Software
4
BINDING SITE FOR RESIDUE EDO A 407
A
EDO
407
Software
3
BINDING SITE FOR RESIDUE 7LI A 408
A
7LI
408
Software
13
BINDING SITE FOR RESIDUE SO4 A 409
A
SO4
409
Software
6
BINDING SITE FOR RESIDUE SO4 A 410
A
SO4
410
Software
3
A
ARG
136
A
ARG
107
6
1_555
A
ALA
138
A
ALA
109
6
1_555
A
LEU
139
A
LEU
110
6
1_555
A
GLN
140
A
GLN
111
6
1_555
A
LEU
143
A
LEU
114
6
1_555
A
HOH
528
L
HOH
6
1_555
A
ASP
108
A
ASP
79
2
1_555
A
TRP
109
A
TRP
80
2
1_555
A
GLU
141
A
GLU
112
5
1_555
A
ARG
258
A
ARG
229
5
1_555
A
SER
260
A
SER
231
5
1_555
A
GLU
282
A
GLU
253
5
2_444
A
HOH
593
L
HOH
5
1_555
A
PHE
100
A
PHE
71
6
2_444
A
GLU
153
A
GLU
124
6
2_444
A
ARG
156
A
ARG
127
6
2_444
A
ASN
160
A
ASN
131
6
2_444
A
SER
261
A
SER
232
6
1_555
A
GLN
264
A
GLN
235
6
1_555
A
PHE
130
A
PHE
101
6
1_555
A
ILE
133
A
ILE
104
6
1_555
A
ASP
170
A
ASP
141
6
1_555
A
ASP
234
A
ASP
205
6
1_555
A
GLY
238
A
GLY
209
6
1_555
A
ASP
239
A
ASP
210
6
1_555
A
GLU
141
A
GLU
112
4
1_555
A
GLU
142
A
GLU
113
4
1_555
A
ARG
145
A
ARG
116
4
1_555
A
HOH
698
L
HOH
4
1_555
A
TRP
269
A
TRP
240
3
1_555
A
ASP
277
A
ASP
248
3
1_555
A
HOH
584
L
HOH
3
1_555
A
VAL
52
A
VAL
23
13
1_555
A
ALA
65
A
ALA
36
13
1_555
A
LYS
67
A
LYS
38
13
1_555
A
ILE
104
A
ILE
75
13
1_555
A
VAL
126
A
VAL
97
13
1_555
A
ASP
128
A
ASP
99
13
1_555
A
GLU
171
A
GLU
142
13
1_555
A
LEU
174
A
LEU
145
13
1_555
A
ASP
186
A
ASP
157
13
1_555
A
HOH
510
L
HOH
13
1_555
A
HOH
679
L
HOH
13
1_555
A
HOH
680
L
HOH
13
1_555
A
HOH
682
L
HOH
13
1_555
A
ARG
156
A
ARG
127
6
1_555
A
ARG
258
A
ARG
229
6
3_545
A
SER
261
A
SER
232
6
3_545
A
PHE
281
A
PHE
252
6
1_555
A
HOH
513
L
HOH
6
1_555
A
HOH
599
L
HOH
6
1_555
A
ARG
179
A
ARG
150
3
1_555
A
HOH
613
L
HOH
3
1_555
A
HOH
701
L
HOH
3
1_555
170
P 65