0.008245
0.004760
0.000000
0.000000
0.009521
0.000000
0.000000
0.000000
0.023361
0.00000
0.00000
0.00000
Jiang, L.
Botkjaer, K.A.
Andersen, L.M.
Yuan, C.
Andreasen, P.A.
Huang, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
9
90.00
90.00
120.00
121.281
121.281
42.806
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C12 H26 O7
282.331
HEXAETHYLENE GLYCOL
POLYETHYLENE GLYCOL PEG400
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Biochem.J.
BIJOAK
0043
0264-6021
449
161
166
10.1042/BJ20121132
23016918
Rezymogenation of active urokinase induced by an inhibitory antibody
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-11-01
RAYONIX MX-225
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
BL17U
SSRF
1.0
SYNCHROTRON
SSRF BEAMLINE BL17U
27715.600
Urokinase-type plasminogen activator
3.4.21.73
catalytic domain
C122A, N145Q
1
man
polymer
96.063
SULFATE ION
2
syn
non-polymer
282.331
HEXAETHYLENE GLYCOL
2
syn
non-polymer
18.015
water
175
nat
water
U-plasminogen activator, uPA
no
no
IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN
LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK
LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW
IRSHTK
IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN
LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK
LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW
IRSHTK
U
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
PLAU
9606
Homo sapiens
4922
Pichia pastoris
X33
plasmid
pPICZaA
1
2.19
43.73
VAPOR DIFFUSION, SITTING DROP
4.6
2.0M ammonium sulfate, 50mM sodium citrate, 5% PEG400, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
repository
Initial release
1
0
2013-01-16
RCSB
Y
PDBJ
2012-02-23
REL
REL
SO4
SULFATE ION
P6G
HEXAETHYLENE GLYCOL
HOH
water
SO4
1
2
SO4
SO4
301
U
SO4
2
2
SO4
SO4
302
U
PG6
5115
3
P6G
P6G
303
U
PG6
5116
3
P6G
P6G
304
U
HOH
1
4
HOH
HOH
401
U
HOH
2
4
HOH
HOH
402
U
HOH
3
4
HOH
HOH
403
U
HOH
4
4
HOH
HOH
404
U
HOH
5
4
HOH
HOH
405
U
HOH
6
4
HOH
HOH
406
U
HOH
7
4
HOH
HOH
407
U
HOH
8
4
HOH
HOH
408
U
HOH
9
4
HOH
HOH
409
U
HOH
10
4
HOH
HOH
410
U
HOH
11
4
HOH
HOH
411
U
HOH
12
4
HOH
HOH
412
U
HOH
13
4
HOH
HOH
413
U
HOH
14
4
HOH
HOH
414
U
HOH
15
4
HOH
HOH
415
U
HOH
16
4
HOH
HOH
416
U
HOH
17
4
HOH
HOH
417
U
HOH
18
4
HOH
HOH
418
U
HOH
19
4
HOH
HOH
419
U
HOH
20
4
HOH
HOH
420
U
HOH
21
4
HOH
HOH
421
U
HOH
22
4
HOH
HOH
422
U
HOH
23
4
HOH
HOH
423
U
HOH
24
4
HOH
HOH
424
U
HOH
25
4
HOH
HOH
425
U
HOH
26
4
HOH
HOH
426
U
HOH
27
4
HOH
HOH
427
U
HOH
28
4
HOH
HOH
428
U
HOH
29
4
HOH
HOH
429
U
HOH
30
4
HOH
HOH
430
U
HOH
31
4
HOH
HOH
431
U
HOH
32
4
HOH
HOH
432
U
HOH
33
4
HOH
HOH
433
U
HOH
34
4
HOH
HOH
434
U
HOH
35
4
HOH
HOH
435
U
HOH
36
4
HOH
HOH
436
U
HOH
37
4
HOH
HOH
437
U
HOH
38
4
HOH
HOH
438
U
HOH
39
4
HOH
HOH
439
U
HOH
40
4
HOH
HOH
440
U
HOH
41
4
HOH
HOH
441
U
HOH
42
4
HOH
HOH
442
U
HOH
43
4
HOH
HOH
443
U
HOH
44
4
HOH
HOH
444
U
HOH
45
4
HOH
HOH
445
U
HOH
46
4
HOH
HOH
446
U
HOH
47
4
HOH
HOH
447
U
HOH
48
4
HOH
HOH
448
U
HOH
49
4
HOH
HOH
449
U
HOH
50
4
HOH
HOH
450
U
HOH
51
4
HOH
HOH
451
U
HOH
52
4
HOH
HOH
452
U
HOH
53
4
HOH
HOH
453
U
HOH
54
4
HOH
HOH
454
U
HOH
55
4
HOH
HOH
455
U
HOH
56
4
HOH
HOH
456
U
HOH
57
4
HOH
HOH
457
U
HOH
58
4
HOH
HOH
458
U
HOH
59
4
HOH
HOH
459
U
HOH
60
4
HOH
HOH
460
U
HOH
61
4
HOH
HOH
461
U
HOH
62
4
HOH
HOH
462
U
HOH
63
4
HOH
HOH
463
U
HOH
64
4
HOH
HOH
464
U
HOH
65
4
HOH
HOH
465
U
HOH
66
4
HOH
HOH
466
U
HOH
67
4
HOH
HOH
467
U
HOH
68
4
HOH
HOH
468
U
HOH
69
4
HOH
HOH
469
U
HOH
70
4
HOH
HOH
470
U
HOH
71
4
HOH
HOH
471
U
HOH
72
4
HOH
HOH
472
U
HOH
73
4
HOH
HOH
473
U
HOH
74
4
HOH
HOH
474
U
HOH
76
4
HOH
HOH
475
U
HOH
77
4
HOH
HOH
476
U
HOH
78
4
HOH
HOH
477
U
HOH
79
4
HOH
HOH
478
U
HOH
80
4
HOH
HOH
479
U
HOH
81
4
HOH
HOH
480
U
HOH
82
4
HOH
HOH
481
U
HOH
83
4
HOH
HOH
482
U
HOH
84
4
HOH
HOH
483
U
HOH
85
4
HOH
HOH
484
U
HOH
86
4
HOH
HOH
485
U
HOH
87
4
HOH
HOH
486
U
HOH
88
4
HOH
HOH
487
U
HOH
89
4
HOH
HOH
488
U
HOH
90
4
HOH
HOH
489
U
HOH
91
4
HOH
HOH
490
U
HOH
92
4
HOH
HOH
491
U
HOH
93
4
HOH
HOH
492
U
HOH
94
4
HOH
HOH
493
U
HOH
95
4
HOH
HOH
494
U
HOH
96
4
HOH
HOH
495
U
HOH
97
4
HOH
HOH
496
U
HOH
98
4
HOH
HOH
497
U
HOH
99
4
HOH
HOH
498
U
HOH
100
4
HOH
HOH
499
U
HOH
101
4
HOH
HOH
500
U
HOH
102
4
HOH
HOH
501
U
HOH
103
4
HOH
HOH
502
U
HOH
104
4
HOH
HOH
503
U
HOH
105
4
HOH
HOH
504
U
HOH
106
4
HOH
HOH
505
U
HOH
107
4
HOH
HOH
506
U
HOH
108
4
HOH
HOH
507
U
HOH
109
4
HOH
HOH
508
U
HOH
110
4
HOH
HOH
509
U
HOH
111
4
HOH
HOH
510
U
HOH
112
4
HOH
HOH
511
U
HOH
113
4
HOH
HOH
512
U
HOH
114
4
HOH
HOH
513
U
HOH
115
4
HOH
HOH
514
U
HOH
116
4
HOH
HOH
515
U
HOH
117
4
HOH
HOH
516
U
HOH
118
4
HOH
HOH
517
U
HOH
119
4
HOH
HOH
518
U
HOH
120
4
HOH
HOH
519
U
HOH
121
4
HOH
HOH
520
U
HOH
122
4
HOH
HOH
521
U
HOH
123
4
HOH
HOH
522
U
HOH
124
4
HOH
HOH
523
U
HOH
125
4
HOH
HOH
524
U
HOH
126
4
HOH
HOH
525
U
HOH
127
4
HOH
HOH
526
U
HOH
128
4
HOH
HOH
527
U
HOH
129
4
HOH
HOH
528
U
HOH
130
4
HOH
HOH
529
U
HOH
131
4
HOH
HOH
530
U
HOH
132
4
HOH
HOH
531
U
HOH
133
4
HOH
HOH
532
U
HOH
134
4
HOH
HOH
533
U
HOH
135
4
HOH
HOH
534
U
HOH
136
4
HOH
HOH
535
U
HOH
137
4
HOH
HOH
536
U
HOH
138
4
HOH
HOH
537
U
HOH
139
4
HOH
HOH
538
U
HOH
140
4
HOH
HOH
539
U
HOH
141
4
HOH
HOH
540
U
HOH
142
4
HOH
HOH
541
U
HOH
143
4
HOH
HOH
542
U
HOH
144
4
HOH
HOH
543
U
HOH
145
4
HOH
HOH
544
U
HOH
146
4
HOH
HOH
545
U
HOH
147
4
HOH
HOH
546
U
HOH
148
4
HOH
HOH
547
U
HOH
149
4
HOH
HOH
548
U
HOH
150
4
HOH
HOH
549
U
HOH
151
4
HOH
HOH
550
U
HOH
152
4
HOH
HOH
551
U
HOH
153
4
HOH
HOH
552
U
HOH
154
4
HOH
HOH
553
U
HOH
155
4
HOH
HOH
554
U
HOH
156
4
HOH
HOH
555
U
HOH
157
4
HOH
HOH
556
U
HOH
158
4
HOH
HOH
557
U
HOH
159
4
HOH
HOH
558
U
HOH
160
4
HOH
HOH
559
U
HOH
161
4
HOH
HOH
560
U
HOH
162
4
HOH
HOH
561
U
HOH
163
4
HOH
HOH
562
U
HOH
164
4
HOH
HOH
563
U
HOH
165
4
HOH
HOH
564
U
HOH
166
4
HOH
HOH
565
U
HOH
167
4
HOH
HOH
566
U
HOH
168
4
HOH
HOH
567
U
HOH
169
4
HOH
HOH
568
U
HOH
170
4
HOH
HOH
569
U
HOH
171
4
HOH
HOH
570
U
HOH
172
4
HOH
HOH
571
U
HOH
173
4
HOH
HOH
572
U
HOH
174
4
HOH
HOH
573
U
HOH
175
4
HOH
HOH
574
U
HOH
176
4
HOH
HOH
575
U
ILE
16
n
1
ILE
16
U
ILE
17
n
2
ILE
17
U
GLY
18
n
3
GLY
18
U
GLY
19
n
4
GLY
19
U
GLU
20
n
5
GLU
20
U
PHE
21
n
6
PHE
21
U
THR
22
n
7
THR
22
U
THR
23
n
8
THR
23
U
ILE
24
n
9
ILE
24
U
GLU
25
n
10
GLU
25
U
ASN
26
n
11
ASN
26
U
GLN
27
n
12
GLN
27
U
PRO
28
n
13
PRO
28
U
TRP
29
n
14
TRP
29
U
PHE
30
n
15
PHE
30
U
ALA
31
n
16
ALA
31
U
ALA
32
n
17
ALA
32
U
ILE
33
n
18
ILE
33
U
TYR
34
n
19
TYR
34
U
ARG
35
n
20
ARG
35
U
ARG
36
n
21
ARG
36
U
HIS
37
n
22
HIS
37
U
ARG
37
n
23
A
ARG
37
U
GLY
37
n
24
B
GLY
37
U
GLY
37
n
25
C
GLY
37
U
SER
37
n
26
D
SER
37
U
VAL
38
n
27
VAL
38
U
THR
39
n
28
THR
39
U
TYR
40
n
29
TYR
40
U
VAL
41
n
30
VAL
41
U
CYS
42
n
31
CYS
42
U
GLY
43
n
32
GLY
43
U
GLY
44
n
33
GLY
44
U
SER
45
n
34
SER
45
U
LEU
46
n
35
LEU
46
U
ILE
47
n
36
ILE
47
U
SER
48
n
37
SER
48
U
PRO
49
n
38
PRO
49
U
CYS
50
n
39
CYS
50
U
TRP
51
n
40
TRP
51
U
VAL
52
n
41
VAL
52
U
ILE
53
n
42
ILE
53
U
SER
54
n
43
SER
54
U
ALA
55
n
44
ALA
55
U
THR
56
n
45
THR
56
U
HIS
57
n
46
HIS
57
U
CYS
58
n
47
CYS
58
U
PHE
59
n
48
PHE
59
U
ILE
60
n
49
ILE
60
U
ASP
60
n
50
A
ASP
60
U
TYR
60
n
51
B
TYR
60
U
PRO
60
n
52
C
PRO
60
U
LYS
61
n
53
LYS
61
U
LYS
62
n
54
LYS
62
U
GLU
62
n
55
A
GLU
62
U
ASP
63
n
56
ASP
63
U
TYR
64
n
57
TYR
64
U
ILE
65
n
58
ILE
65
U
VAL
66
n
59
VAL
66
U
TYR
67
n
60
TYR
67
U
LEU
68
n
61
LEU
68
U
GLY
69
n
62
GLY
69
U
ARG
70
n
63
ARG
70
U
SER
71
n
64
SER
71
U
ARG
72
n
65
ARG
72
U
LEU
73
n
66
LEU
73
U
ASN
74
n
67
ASN
74
U
SER
75
n
68
SER
75
U
ASN
76
n
69
ASN
76
U
THR
77
n
70
THR
77
U
GLN
78
n
71
GLN
78
U
GLY
79
n
72
GLY
79
U
GLU
80
n
73
GLU
80
U
MET
81
n
74
MET
81
U
LYS
82
n
75
LYS
82
U
PHE
83
n
76
PHE
83
U
GLU
84
n
77
GLU
84
U
VAL
85
n
78
VAL
85
U
GLU
86
n
79
GLU
86
U
ASN
87
n
80
ASN
87
U
LEU
88
n
81
LEU
88
U
ILE
89
n
82
ILE
89
U
LEU
90
n
83
LEU
90
U
HIS
91
n
84
HIS
91
U
LYS
92
n
85
LYS
92
U
ASP
93
n
86
ASP
93
U
TYR
94
n
87
TYR
94
U
SER
95
n
88
SER
95
U
ALA
96
n
89
ALA
96
U
ASP
97
n
90
ASP
97
U
THR
97
n
91
A
THR
97
U
LEU
97
n
92
B
LEU
97
U
ALA
98
n
93
ALA
98
U
HIS
99
n
94
HIS
99
U
HIS
100
n
95
HIS
100
U
ASN
101
n
96
ASN
101
U
ASP
102
n
97
ASP
102
U
ILE
103
n
98
ILE
103
U
ALA
104
n
99
ALA
104
U
LEU
105
n
100
LEU
105
U
LEU
106
n
101
LEU
106
U
LYS
107
n
102
LYS
107
U
ILE
108
n
103
ILE
108
U
ARG
109
n
104
ARG
109
U
SER
110
n
105
SER
110
U
LYS
110
n
106
A
LYS
110
U
GLU
110
n
107
B
GLU
110
U
GLY
110
n
108
C
GLY
110
U
ARG
110
n
109
D
ARG
110
U
CYS
111
n
110
CYS
111
U
ALA
112
n
111
ALA
112
U
GLN
113
n
112
GLN
113
U
PRO
114
n
113
PRO
114
U
SER
115
n
114
SER
115
U
ARG
116
n
115
ARG
116
U
THR
117
n
116
THR
117
U
ILE
118
n
117
ILE
118
U
GLN
119
n
118
GLN
119
U
THR
120
n
119
THR
120
U
ILE
121
n
120
ILE
121
U
ALA
122
n
121
ALA
122
U
LEU
123
n
122
LEU
123
U
PRO
124
n
123
PRO
124
U
SER
125
n
124
SER
125
U
MET
126
n
125
MET
126
U
TYR
127
n
126
TYR
127
U
ASN
128
n
127
ASN
128
U
ASP
129
n
128
ASP
129
U
PRO
130
n
129
PRO
130
U
GLN
131
n
130
GLN
131
U
PHE
132
n
131
PHE
132
U
GLY
133
n
132
GLY
133
U
THR
134
n
133
THR
134
U
SER
135
n
134
SER
135
U
CYS
136
n
135
CYS
136
U
GLU
137
n
136
GLU
137
U
ILE
138
n
137
ILE
138
U
THR
139
n
138
THR
139
U
GLY
140
n
139
GLY
140
U
PHE
141
n
140
PHE
141
U
GLY
142
n
141
GLY
142
U
LYS
143
n
142
LYS
143
U
GLU
144
n
143
GLU
144
U
GLN
145
n
144
GLN
145
U
SER
146
n
145
SER
146
U
THR
147
n
146
THR
147
U
ASP
148
n
147
ASP
148
U
TYR
149
n
148
TYR
149
U
LEU
150
n
149
LEU
150
U
TYR
151
n
150
TYR
151
U
PRO
152
n
151
PRO
152
U
GLU
153
n
152
GLU
153
U
GLN
154
n
153
GLN
154
U
LEU
155
n
154
LEU
155
U
LYS
156
n
155
LYS
156
U
MET
157
n
156
MET
157
U
THR
158
n
157
THR
158
U
VAL
159
n
158
VAL
159
U
VAL
160
n
159
VAL
160
U
LYS
161
n
160
LYS
161
U
LEU
162
n
161
LEU
162
U
ILE
163
n
162
ILE
163
U
SER
164
n
163
SER
164
U
HIS
165
n
164
HIS
165
U
ARG
166
n
165
ARG
166
U
GLU
167
n
166
GLU
167
U
CYS
168
n
167
CYS
168
U
GLN
169
n
168
GLN
169
U
GLN
170
n
169
GLN
170
U
PRO
170
n
170
A
PRO
170
U
HIS
170
n
171
B
HIS
170
U
TYR
171
n
172
TYR
171
U
TYR
172
n
173
TYR
172
U
GLY
173
n
174
GLY
173
U
SER
174
n
175
SER
174
U
GLU
175
n
176
GLU
175
U
VAL
176
n
177
VAL
176
U
THR
177
n
178
THR
177
U
THR
178
n
179
THR
178
U
LYS
179
n
180
LYS
179
U
MET
180
n
181
MET
180
U
LEU
181
n
182
LEU
181
U
CYS
182
n
183
CYS
182
U
ALA
183
n
184
ALA
183
U
ALA
184
n
185
ALA
184
U
ASP
185
n
186
ASP
185
U
PRO
185
n
187
A
PRO
185
U
GLN
185
n
188
B
GLN
185
U
TRP
186
n
189
TRP
186
U
LYS
187
n
190
LYS
187
U
THR
188
n
191
THR
188
U
ASP
189
n
192
ASP
189
U
SER
190
n
193
SER
190
U
CYS
191
n
194
CYS
191
U
GLN
192
n
195
GLN
192
U
GLY
193
n
196
GLY
193
U
ASP
194
n
197
ASP
194
U
SER
195
n
198
SER
195
U
GLY
196
n
199
GLY
196
U
GLY
197
n
200
GLY
197
U
PRO
198
n
201
PRO
198
U
LEU
199
n
202
LEU
199
U
VAL
200
n
203
VAL
200
U
CYS
201
n
204
CYS
201
U
SER
202
n
205
SER
202
U
LEU
203
n
206
LEU
203
U
GLN
204
n
207
GLN
204
U
GLY
205
n
208
GLY
205
U
ARG
206
n
209
ARG
206
U
MET
207
n
210
MET
207
U
THR
208
n
211
THR
208
U
LEU
209
n
212
LEU
209
U
THR
210
n
213
THR
210
U
GLY
211
n
214
GLY
211
U
ILE
212
n
215
ILE
212
U
VAL
213
n
216
VAL
213
U
SER
214
n
217
SER
214
U
TRP
215
n
218
TRP
215
U
GLY
216
n
219
GLY
216
U
ARG
217
n
220
ARG
217
U
GLY
219
n
221
GLY
219
U
CYS
220
n
222
CYS
220
U
ALA
221
n
223
ALA
221
U
LEU
222
n
224
LEU
222
U
LYS
223
n
225
LYS
223
U
ASP
223
n
226
A
ASP
223
U
LYS
224
n
227
LYS
224
U
PRO
225
n
228
PRO
225
U
GLY
226
n
229
GLY
226
U
VAL
227
n
230
VAL
227
U
TYR
228
n
231
TYR
228
U
THR
229
n
232
THR
229
U
ARG
230
n
233
ARG
230
U
VAL
231
n
234
VAL
231
U
SER
232
n
235
SER
232
U
HIS
233
n
236
HIS
233
U
PHE
234
n
237
PHE
234
U
LEU
235
n
238
LEU
235
U
PRO
236
n
239
PRO
236
U
TRP
237
n
240
TRP
237
U
ILE
238
n
241
ILE
238
U
ARG
239
n
242
ARG
239
U
SER
240
n
243
SER
240
U
HIS
241
n
244
HIS
241
U
THR
242
n
245
THR
242
U
LYS
243
n
246
LYS
243
U
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
U
N
GLU
20
A
N
GLU
5
U
O
MET
157
A
O
MET
156
U
N
ILE
163
A
N
ILE
162
U
O
CYS
182
A
O
CYS
183
U
N
LEU
181
A
N
LEU
182
U
O
TYR
228
A
O
TYR
231
U
O
VAL
227
A
O
VAL
230
U
N
TRP
215
A
N
TRP
218
U
O
ARG
206
A
O
ARG
209
U
N
LEU
203
A
N
LEU
206
U
O
VAL
200
A
O
VAL
203
U
N
GLU
137
A
N
GLU
136
U
N
CYS
136
A
N
CYS
135
U
O
VAL
160
A
O
VAL
159
U
N
ILE
33
A
N
ILE
18
U
O
VAL
41
A
O
VAL
30
U
N
SER
45
A
N
SER
34
U
O
ILE
53
A
O
ILE
42
U
N
SER
54
A
N
SER
43
U
O
ALA
104
A
O
ALA
99
U
O
LEU
105
A
O
LEU
100
U
N
ILE
89
A
N
ILE
82
U
O
PHE
83
A
O
PHE
76
U
N
VAL
66
A
N
VAL
59
U
O
ILE
65
A
O
ILE
58
U
N
TYR
34
A
N
TYR
19
1
U
C11
P6G
303
D
C11
P6G
1
1
N
1
U
C12
P6G
303
D
C12
P6G
1
1
N
1
U
O13
P6G
303
D
O13
P6G
1
1
N
1
U
C14
P6G
303
D
C14
P6G
1
1
N
1
U
C15
P6G
303
D
C15
P6G
1
1
N
1
U
O16
P6G
303
D
O16
P6G
1
1
N
1
U
C17
P6G
303
D
C17
P6G
1
1
N
1
U
C18
P6G
303
D
C18
P6G
1
1
N
1
U
O19
P6G
303
D
O19
P6G
1
1
N
1
U
C11
P6G
304
E
C11
P6G
1
1
N
1
U
C12
P6G
304
E
C12
P6G
1
1
N
1
U
O13
P6G
304
E
O13
P6G
1
1
N
1
U
C14
P6G
304
E
C14
P6G
1
1
N
1
U
C15
P6G
304
E
C15
P6G
1
1
N
1
U
O16
P6G
304
E
O16
P6G
1
1
N
1
U
C17
P6G
304
E
C17
P6G
1
1
N
1
U
C18
P6G
304
E
C18
P6G
1
1
N
1
U
O19
P6G
304
E
O19
P6G
1
1
N
1
-14.64
2.20
117.20
102.56
U
U
U
CA
C
N
ALA
ALA
ASP
96
96
97
Y
1
16.08
1.60
122.70
138.78
U
U
U
O
C
N
ALA
ALA
ASP
96
96
97
Y
1
-3.59
0.50
120.30
116.71
U
U
U
NE
CZ
NH2
ARG
ARG
ARG
116
116
116
N
A
1
U
U
C
N
LYS
GLU
62
62
0.244
0.023
1.336
1.580
Y
A
1
U
U
C
N
ASP
THR
97
97
0.235
0.023
1.336
1.571
Y
1
U
GLN
27
-158.59
60.83
1
U
SER
54
-151.17
-158.33
C
1
U
PRO
60
-75.41
21.37
B
1
U
LEU
97
-146.20
-17.26
1
U
TYR
171
-96.29
-109.79
1
U
SER
214
-123.60
-62.93
18.912
-0.34
-0.17
0.00
-0.34
0.00
0.51
0.932
0.896
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.24361
0.19748
0.19984
1.94
60.64
828
15651
5.0
94.24
3.997
0.118
RANDOM
1
THROUGHOUT
SAD
0.220
0.182
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
1.94
60.64
175
2147
30
0
1942
0.006
0.020
2002
1.093
1.954
2672
5.996
5.000
225
34.468
23.218
87
14.406
15.000
339
18.420
15.000
13
0.072
0.200
293
0.004
0.021
1414
0.232
0.190
1.986
57
1243
20
99.39
1.94
60.64
4DVA
16479
15651
1
5.5
94
1.94
1.97
1
5.4
100
data collection
ADSC
Quantum
phasing
AMoRE
refinement
REFMAC
5.6.0117
data reduction
HKL-2000
data scaling
HKL-2000
Urokinase-type plasminogen activator (E.C.3.4.21.73)
The crystal structure of human urokinase-type plasminogen activator catalytic domain
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
U
THR
23
A
THR
8
HELX_P
U
GLN
27
A
GLN
12
5
1
5
U
ALA
55
A
ALA
44
HELX_P
U
PHE
59
A
PHE
48
5
2
5
U
LYS
61
A
LYS
53
HELX_P
U
GLU
62
A
GLU
55
5
3
3
A
U
SER
164
A
SER
163
HELX_P
U
GLN
169
A
GLN
168
1
4
6
U
TYR
172
A
TYR
173
HELX_P
U
VAL
176
A
VAL
177
5
5
5
U
PHE
234
A
PHE
237
HELX_P
U
THR
242
A
THR
245
1
6
9
disulf
2.024
U
CYS
42
A
SG
CYS
31
1_555
U
CYS
58
A
SG
CYS
47
1_555
disulf
1.914
U
CYS
50
A
SG
CYS
39
1_555
U
CYS
111
A
SG
CYS
110
1_555
disulf
2.034
U
CYS
136
A
SG
CYS
135
1_555
U
CYS
201
A
SG
CYS
204
1_555
disulf
2.021
U
CYS
168
A
SG
CYS
167
1_555
U
CYS
182
A
SG
CYS
183
1_555
disulf
2.037
U
CYS
191
A
SG
CYS
194
1_555
U
CYS
220
A
SG
CYS
222
1_555
HYDROLASE
Hydrolase, Plasminogen activation, Protease, Serine protease
UROK_HUMAN
UNP
1
179
P00749
IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN
LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK
LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW
IRSHTK
179
424
4DVA
16
243
P00749
U
1
1
246
1
CYS
ENGINEERED MUTATION
ALA
122
4DVA
U
P00749
UNP
299
121
1
ASN
ENGINEERED MUTATION
GLN
145
4DVA
U
P00749
UNP
322
144
8
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
U
GLU
20
A
GLU
5
U
PHE
21
A
PHE
6
U
LYS
156
A
LYS
155
U
ILE
163
A
ILE
162
U
MET
180
A
MET
181
U
ALA
184
A
ALA
185
U
GLY
226
A
GLY
229
U
ARG
230
A
ARG
233
U
ARG
206
A
ARG
209
U
TRP
215
A
TRP
218
U
PRO
198
A
PRO
201
U
LEU
203
A
LEU
206
U
SER
135
A
SER
134
U
GLY
140
A
GLY
139
U
LYS
156
A
LYS
155
U
ILE
163
A
ILE
162
U
PHE
30
A
PHE
15
U
ARG
36
A
ARG
21
U
VAL
38
A
VAL
27
U
SER
48
A
SER
37
U
TRP
51
A
TRP
40
U
SER
54
A
SER
43
U
ALA
104
A
ALA
99
U
ARG
109
A
ARG
104
U
MET
81
A
MET
74
U
LEU
90
A
LEU
83
U
TYR
64
A
TYR
57
U
LEU
68
A
LEU
61
U
PHE
30
A
PHE
15
U
ARG
36
A
ARG
21
BINDING SITE FOR RESIDUE SO4 U 301
Software
8
BINDING SITE FOR RESIDUE SO4 U 302
Software
6
BINDING SITE FOR RESIDUE P6G U 303
Software
6
BINDING SITE FOR RESIDUE P6G U 304
Software
2
U
HIS
57
A
HIS
46
8
1_555
U
GLN
192
A
GLN
195
8
1_555
U
GLY
193
A
GLY
196
8
1_555
U
SER
195
A
SER
198
8
1_555
U
HOH
543
F
HOH
8
1_555
U
HOH
545
F
HOH
8
1_555
U
HOH
547
F
HOH
8
1_555
U
HOH
559
F
HOH
8
1_555
U
ASN
87
A
ASN
80
6
9_445
U
GLN
170
A
GLN
169
6
1_555
U
PRO
170
A
PRO
170
A
6
1_555
U
HIS
170
A
HIS
171
B
6
1_555
U
HOH
470
F
HOH
6
9_445
U
HOH
477
F
HOH
6
9_445
U
LEU
162
A
LEU
161
6
1_555
U
ILE
163
A
ILE
162
6
1_555
U
ALA
184
A
ALA
185
6
1_555
U
ASP
185
A
ASP
186
6
1_555
U
PRO
185
A
PRO
187
A
6
1_555
U
TRP
186
A
TRP
189
6
1_555
U
ASN
74
A
ASN
67
2
1_555
U
SER
202
A
SER
205
2
6_445
146
H 3