0.015482
0.000000
0.000343
0.000000
0.014592
0.000000
0.000000
0.000000
0.010623
0.00000
0.00000
0.00000
Kwon, Y.D.
Kwong, P.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
91.27
90.00
64.591
68.533
94.155
C16 H19 Cl F N3 O2
339.792
N-(4-chloro-3-fluorophenyl)-N'-[(3aS,6aS)-hexahydrocyclopenta[c]pyrrol-3a(1H)-ylmethyl]ethanediamide
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C8 H18 N2 O4 S
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
N
7
N
CL
N
8
N
F
N
9
N
N
N
10
N
C
N
11
N
C
N
12
N
N
N
13
N
O
N
14
N
O
N
15
N
C
N
16
S
C
N
17
N
C
N
18
N
N
N
19
N
C
N
20
S
C
N
21
N
C
N
22
N
C
N
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
C
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
N
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
R
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
S
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
N
C
N
132
N
C
N
133
N
N
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
C
N
141
N
S
N
142
N
O
N
143
N
O
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
N
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
O
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
Y
217
N
C
Y
218
N
N
Y
219
N
C
Y
220
N
C
Y
221
N
N
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
S
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
N
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
S
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
R
C
N
326
R
C
N
327
R
C
N
328
S
C
N
329
R
C
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
N
N
334
N
O
N
335
N
O
N
336
N
O
N
337
N
O
N
338
N
O
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
N
383
N
C
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
N
400
N
O
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
N
N
410
S
C
N
411
N
C
N
412
N
O
N
413
R
C
N
414
N
O
N
415
N
C
N
416
N
O
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
N
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
N
N
454
S
C
N
455
N
C
N
456
N
O
N
457
N
C
Y
458
N
C
Y
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
N
464
N
O
N
465
N
O
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
N
N
478
S
C
N
479
N
C
N
480
N
O
N
481
N
C
N
482
N
C
N
483
N
C
N
484
N
O
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
doub
N
16
N
sing
N
17
N
sing
Y
18
N
doub
Y
19
N
sing
Y
20
N
sing
N
21
N
sing
Y
22
N
doub
Y
23
N
doub
Y
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
Y
217
N
sing
Y
218
N
doub
Y
219
N
doub
N
220
N
sing
Y
221
N
sing
N
222
N
sing
Y
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
Y
355
N
doub
Y
356
N
sing
Y
357
N
sing
N
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
Y
424
N
doub
Y
425
N
sing
Y
426
N
sing
N
427
N
sing
Y
428
N
doub
Y
429
N
sing
Y
430
N
sing
N
431
N
sing
Y
432
N
sing
Y
433
N
doub
N
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
doub
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
Y
452
N
doub
Y
453
N
sing
Y
454
N
sing
N
455
N
sing
Y
456
N
doub
N
457
N
sing
Y
458
N
doub
N
459
N
sing
Y
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
doub
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
US
Plos One
1932-6203
9
e85940
e85940
10.1371/journal.pone.0085940
24489681
Crystal Structures of HIV-1 gp120 Envelope Glycoprotein in Complex with NBD Analogues That Target the CD4-Binding Site.
2014
10.2210/pdb4dvw/pdb
pdb_00004dvw
100
1
IMAGE PLATE
2011-06-23
MAR scanner 300 mm plate
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
22-BM
APS
1
SYNCHROTRON
APS BEAMLINE 22-BM
39160.367
clade A/E 93TH057 HIV-1 gp120 core
S375H
2
man
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
20
man
non-polymer
238.305
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
syn
non-polymer
339.792
N-(4-chloro-3-fluorophenyl)-N'-[(3aS,6aS)-hexahydrocyclopenta[c]pyrrol-3a(1H)-ylmethyl]ethanediamide
2
syn
non-polymer
18.015
water
231
nat
water
no
no
VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLT
GGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSEN
LTNNAKTIIVHLNKSVEINCTRPSNGGSGSGGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITM
HSFNCRGEFFYCNTTQLFNNTCIGNETMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGG
ANNTSNETFRPGGGNIKDNWRSELYKYKVVQIE
VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLT
GGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSEN
LTNNAKTIIVHLNKSVEINCTRPSNGGSGSGGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITM
HSFNCRGEFFYCNTTQLFNNTCIGNETMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGG
ANNTSNETFRPGGGNIKDNWRSELYKYKVVQIE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
353
HIV-1 Env
11676
Human immunodeficiency virus 1
293F
9606
Homo sapiens
plasmid
Biological sequence
pVRC8400
1
2.66
53.76
VAPOR DIFFUSION, HANGING DROP
7.5
10% PEG 8000, 5% iso-propanol, 0.1M HEPES 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp
database_PDB_caveat
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Structure summary
Advisory
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2013-02-27
1
1
2014-03-19
1
2
2017-05-31
1
3
2020-07-29
1
4
2023-09-13
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
RCSB
2012-02-23
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
EPE
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
0M4
N-(4-chloro-3-fluorophenyl)-N'-[(3aS,6aS)-hexahydrocyclopenta[c]pyrrol-3a(1H)-ylmethyl]ethanediamide
HOH
water
THE CRYSTALLIZED SEQUENCE WAS CONSTRUCTED BY DELETION OF N-TERMINAL 1-43, BY REPLACING THE V1/V2 REGIONS WITH A GG LINKER, AND REPLACING V3 REGION WITH A LINKER GGSGSG
3TGT
pdb entry 3TGT
PDB
experimental model
NAG
734
2
NAG
NAG
501
A
NAG
741
2
NAG
NAG
502
A
NAG
762
2
NAG
NAG
503
A
NAG
776
2
NAG
NAG
504
A
NAG
789
2
NAG
NAG
505
A
NAG
795
2
NAG
NAG
506
A
NAG
834
2
NAG
NAG
507
A
NAG
855
2
NAG
NAG
508
A
NAG
886
2
NAG
NAG
509
A
NAG
948
2
NAG
NAG
510
A
EPE
1
3
EPE
EPE
511
A
0M4
1
4
0M4
0M4
512
A
NAG
734
2
NAG
NAG
501
B
NAG
741
2
NAG
NAG
502
B
NAG
762
2
NAG
NAG
503
B
NAG
776
2
NAG
NAG
504
B
NAG
789
2
NAG
NAG
505
B
NAG
795
2
NAG
NAG
506
B
NAG
834
2
NAG
NAG
507
B
NAG
855
2
NAG
NAG
508
B
NAG
886
2
NAG
NAG
509
B
NAG
948
2
NAG
NAG
510
B
EPE
1
3
EPE
EPE
511
B
0M4
1
4
0M4
0M4
512
B
HOH
1
5
HOH
HOH
601
A
HOH
3
5
HOH
HOH
602
A
HOH
4
5
HOH
HOH
603
A
HOH
5
5
HOH
HOH
604
A
HOH
6
5
HOH
HOH
605
A
HOH
7
5
HOH
HOH
606
A
HOH
8
5
HOH
HOH
607
A
HOH
9
5
HOH
HOH
608
A
HOH
10
5
HOH
HOH
609
A
HOH
11
5
HOH
HOH
610
A
HOH
14
5
HOH
HOH
611
A
HOH
15
5
HOH
HOH
612
A
HOH
17
5
HOH
HOH
613
A
HOH
18
5
HOH
HOH
614
A
HOH
19
5
HOH
HOH
615
A
HOH
20
5
HOH
HOH
616
A
HOH
22
5
HOH
HOH
617
A
HOH
25
5
HOH
HOH
618
A
HOH
27
5
HOH
HOH
619
A
HOH
31
5
HOH
HOH
620
A
HOH
32
5
HOH
HOH
621
A
HOH
35
5
HOH
HOH
622
A
HOH
36
5
HOH
HOH
623
A
HOH
38
5
HOH
HOH
624
A
HOH
39
5
HOH
HOH
625
A
HOH
40
5
HOH
HOH
626
A
HOH
42
5
HOH
HOH
627
A
HOH
43
5
HOH
HOH
628
A
HOH
44
5
HOH
HOH
629
A
HOH
45
5
HOH
HOH
630
A
HOH
46
5
HOH
HOH
631
A
HOH
47
5
HOH
HOH
632
A
HOH
48
5
HOH
HOH
633
A
HOH
49
5
HOH
HOH
634
A
HOH
50
5
HOH
HOH
635
A
HOH
51
5
HOH
HOH
636
A
HOH
53
5
HOH
HOH
637
A
HOH
58
5
HOH
HOH
638
A
HOH
60
5
HOH
HOH
639
A
HOH
62
5
HOH
HOH
640
A
HOH
63
5
HOH
HOH
641
A
HOH
66
5
HOH
HOH
642
A
HOH
67
5
HOH
HOH
643
A
HOH
68
5
HOH
HOH
644
A
HOH
69
5
HOH
HOH
645
A
HOH
73
5
HOH
HOH
646
A
HOH
75
5
HOH
HOH
647
A
HOH
76
5
HOH
HOH
648
A
HOH
77
5
HOH
HOH
649
A
HOH
78
5
HOH
HOH
650
A
HOH
79
5
HOH
HOH
651
A
HOH
80
5
HOH
HOH
652
A
HOH
81
5
HOH
HOH
653
A
HOH
82
5
HOH
HOH
654
A
HOH
84
5
HOH
HOH
655
A
HOH
87
5
HOH
HOH
656
A
HOH
88
5
HOH
HOH
657
A
HOH
90
5
HOH
HOH
658
A
HOH
92
5
HOH
HOH
659
A
HOH
94
5
HOH
HOH
660
A
HOH
96
5
HOH
HOH
661
A
HOH
99
5
HOH
HOH
662
A
HOH
100
5
HOH
HOH
663
A
HOH
101
5
HOH
HOH
664
A
HOH
102
5
HOH
HOH
665
A
HOH
104
5
HOH
HOH
666
A
HOH
105
5
HOH
HOH
667
A
HOH
106
5
HOH
HOH
668
A
HOH
107
5
HOH
HOH
669
A
HOH
109
5
HOH
HOH
670
A
HOH
110
5
HOH
HOH
671
A
HOH
113
5
HOH
HOH
672
A
HOH
114
5
HOH
HOH
673
A
HOH
115
5
HOH
HOH
674
A
HOH
116
5
HOH
HOH
675
A
HOH
118
5
HOH
HOH
676
A
HOH
119
5
HOH
HOH
677
A
HOH
120
5
HOH
HOH
678
A
HOH
122
5
HOH
HOH
679
A
HOH
123
5
HOH
HOH
680
A
HOH
126
5
HOH
HOH
681
A
HOH
127
5
HOH
HOH
682
A
HOH
129
5
HOH
HOH
683
A
HOH
130
5
HOH
HOH
684
A
HOH
131
5
HOH
HOH
685
A
HOH
132
5
HOH
HOH
686
A
HOH
134
5
HOH
HOH
687
A
HOH
135
5
HOH
HOH
688
A
HOH
136
5
HOH
HOH
689
A
HOH
138
5
HOH
HOH
690
A
HOH
139
5
HOH
HOH
691
A
HOH
140
5
HOH
HOH
692
A
HOH
142
5
HOH
HOH
693
A
HOH
144
5
HOH
HOH
694
A
HOH
146
5
HOH
HOH
695
A
HOH
148
5
HOH
HOH
696
A
HOH
150
5
HOH
HOH
697
A
HOH
151
5
HOH
HOH
698
A
HOH
152
5
HOH
HOH
699
A
HOH
156
5
HOH
HOH
700
A
HOH
157
5
HOH
HOH
701
A
HOH
158
5
HOH
HOH
702
A
HOH
159
5
HOH
HOH
703
A
HOH
160
5
HOH
HOH
704
A
HOH
161
5
HOH
HOH
705
A
HOH
162
5
HOH
HOH
706
A
HOH
163
5
HOH
HOH
707
A
HOH
164
5
HOH
HOH
708
A
HOH
165
5
HOH
HOH
709
A
HOH
167
5
HOH
HOH
710
A
HOH
170
5
HOH
HOH
711
A
HOH
172
5
HOH
HOH
712
A
HOH
173
5
HOH
HOH
713
A
HOH
174
5
HOH
HOH
714
A
HOH
176
5
HOH
HOH
715
A
HOH
179
5
HOH
HOH
716
A
HOH
182
5
HOH
HOH
717
A
HOH
183
5
HOH
HOH
718
A
HOH
184
5
HOH
HOH
719
A
HOH
185
5
HOH
HOH
720
A
HOH
186
5
HOH
HOH
721
A
HOH
187
5
HOH
HOH
722
A
HOH
189
5
HOH
HOH
723
A
HOH
191
5
HOH
HOH
724
A
HOH
192
5
HOH
HOH
725
A
HOH
194
5
HOH
HOH
726
A
HOH
195
5
HOH
HOH
727
A
HOH
196
5
HOH
HOH
728
A
HOH
197
5
HOH
HOH
729
A
HOH
198
5
HOH
HOH
730
A
HOH
199
5
HOH
HOH
731
A
HOH
203
5
HOH
HOH
732
A
HOH
204
5
HOH
HOH
733
A
HOH
205
5
HOH
HOH
734
A
HOH
207
5
HOH
HOH
735
A
HOH
209
5
HOH
HOH
736
A
HOH
211
5
HOH
HOH
737
A
HOH
212
5
HOH
HOH
738
A
HOH
213
5
HOH
HOH
739
A
HOH
214
5
HOH
HOH
740
A
HOH
215
5
HOH
HOH
741
A
HOH
216
5
HOH
HOH
742
A
HOH
218
5
HOH
HOH
743
A
HOH
219
5
HOH
HOH
744
A
HOH
222
5
HOH
HOH
745
A
HOH
225
5
HOH
HOH
746
A
HOH
226
5
HOH
HOH
747
A
HOH
227
5
HOH
HOH
748
A
HOH
228
5
HOH
HOH
749
A
HOH
230
5
HOH
HOH
750
A
HOH
2
5
HOH
HOH
601
B
HOH
12
5
HOH
HOH
602
B
HOH
13
5
HOH
HOH
603
B
HOH
16
5
HOH
HOH
604
B
HOH
21
5
HOH
HOH
605
B
HOH
23
5
HOH
HOH
606
B
HOH
24
5
HOH
HOH
607
B
HOH
26
5
HOH
HOH
608
B
HOH
28
5
HOH
HOH
609
B
HOH
29
5
HOH
HOH
610
B
HOH
30
5
HOH
HOH
611
B
HOH
33
5
HOH
HOH
612
B
HOH
34
5
HOH
HOH
613
B
HOH
37
5
HOH
HOH
614
B
HOH
41
5
HOH
HOH
615
B
HOH
52
5
HOH
HOH
616
B
HOH
54
5
HOH
HOH
617
B
HOH
55
5
HOH
HOH
618
B
HOH
56
5
HOH
HOH
619
B
HOH
57
5
HOH
HOH
620
B
HOH
59
5
HOH
HOH
621
B
HOH
61
5
HOH
HOH
622
B
HOH
64
5
HOH
HOH
623
B
HOH
65
5
HOH
HOH
624
B
HOH
70
5
HOH
HOH
625
B
HOH
71
5
HOH
HOH
626
B
HOH
72
5
HOH
HOH
627
B
HOH
74
5
HOH
HOH
628
B
HOH
83
5
HOH
HOH
629
B
HOH
85
5
HOH
HOH
630
B
HOH
86
5
HOH
HOH
631
B
HOH
89
5
HOH
HOH
632
B
HOH
91
5
HOH
HOH
633
B
HOH
93
5
HOH
HOH
634
B
HOH
95
5
HOH
HOH
635
B
HOH
97
5
HOH
HOH
636
B
HOH
98
5
HOH
HOH
637
B
HOH
103
5
HOH
HOH
638
B
HOH
108
5
HOH
HOH
639
B
HOH
111
5
HOH
HOH
640
B
HOH
112
5
HOH
HOH
641
B
HOH
117
5
HOH
HOH
642
B
HOH
121
5
HOH
HOH
643
B
HOH
124
5
HOH
HOH
644
B
HOH
125
5
HOH
HOH
645
B
HOH
128
5
HOH
HOH
646
B
HOH
133
5
HOH
HOH
647
B
HOH
137
5
HOH
HOH
648
B
HOH
141
5
HOH
HOH
649
B
HOH
143
5
HOH
HOH
650
B
HOH
145
5
HOH
HOH
651
B
HOH
147
5
HOH
HOH
652
B
HOH
149
5
HOH
HOH
653
B
HOH
153
5
HOH
HOH
654
B
HOH
154
5
HOH
HOH
655
B
HOH
155
5
HOH
HOH
656
B
HOH
166
5
HOH
HOH
657
B
HOH
168
5
HOH
HOH
658
B
HOH
169
5
HOH
HOH
659
B
HOH
171
5
HOH
HOH
660
B
HOH
175
5
HOH
HOH
661
B
HOH
177
5
HOH
HOH
662
B
HOH
178
5
HOH
HOH
663
B
HOH
180
5
HOH
HOH
664
B
HOH
181
5
HOH
HOH
665
B
HOH
188
5
HOH
HOH
666
B
HOH
190
5
HOH
HOH
667
B
HOH
193
5
HOH
HOH
668
B
HOH
200
5
HOH
HOH
669
B
HOH
201
5
HOH
HOH
670
B
HOH
202
5
HOH
HOH
671
B
HOH
206
5
HOH
HOH
672
B
HOH
208
5
HOH
HOH
673
B
HOH
210
5
HOH
HOH
674
B
HOH
217
5
HOH
HOH
675
B
HOH
220
5
HOH
HOH
676
B
HOH
221
5
HOH
HOH
677
B
HOH
223
5
HOH
HOH
678
B
HOH
224
5
HOH
HOH
679
B
HOH
229
5
HOH
HOH
680
B
HOH
231
5
HOH
HOH
681
B
VAL
44
n
1
VAL
44
A
TRP
45
n
2
TRP
45
A
LYS
46
n
3
LYS
46
A
ASP
47
n
4
ASP
47
A
ALA
48
n
5
ALA
48
A
ASP
49
n
6
ASP
49
A
THR
50
n
7
THR
50
A
THR
51
n
8
THR
51
A
LEU
52
n
9
LEU
52
A
PHE
53
n
10
PHE
53
A
CYS
54
n
11
CYS
54
A
ALA
55
n
12
ALA
55
A
SER
56
n
13
SER
56
A
ASP
57
n
14
ASP
57
A
ALA
58
n
15
ALA
58
A
LYS
59
n
16
LYS
59
A
ALA
60
n
17
ALA
60
A
HIS
61
n
18
HIS
61
A
GLU
62
n
19
GLU
62
A
THR
63
n
20
THR
63
A
GLU
64
n
21
GLU
64
A
VAL
65
n
22
VAL
65
A
HIS
66
n
23
HIS
66
A
ASN
67
n
24
ASN
67
A
VAL
68
n
25
VAL
68
A
TRP
69
n
26
TRP
69
A
ALA
70
n
27
ALA
70
A
THR
71
n
28
THR
71
A
HIS
72
n
29
HIS
72
A
ALA
73
n
30
ALA
73
A
CYS
74
n
31
CYS
74
A
VAL
75
n
32
VAL
75
A
PRO
76
n
33
PRO
76
A
THR
77
n
34
THR
77
A
ASP
78
n
35
ASP
78
A
PRO
79
n
36
PRO
79
A
ASN
80
n
37
ASN
80
A
PRO
81
n
38
PRO
81
A
GLN
82
n
39
GLN
82
A
GLU
83
n
40
GLU
83
A
ILE
84
n
41
ILE
84
A
HIS
85
n
42
HIS
85
A
LEU
86
n
43
LEU
86
A
GLU
87
n
44
GLU
87
A
ASN
88
n
45
ASN
88
A
VAL
89
n
46
VAL
89
A
THR
90
n
47
THR
90
A
GLU
91
n
48
GLU
91
A
ASN
92
n
49
ASN
92
A
PHE
93
n
50
PHE
93
A
ASN
94
n
51
ASN
94
A
MET
95
n
52
MET
95
A
TRP
96
n
53
TRP
96
A
LYS
97
n
54
LYS
97
A
ASN
98
n
55
ASN
98
A
ASN
99
n
56
ASN
99
A
MET
100
n
57
MET
100
A
VAL
101
n
58
VAL
101
A
GLU
102
n
59
GLU
102
A
GLN
103
n
60
GLN
103
A
MET
104
n
61
MET
104
A
GLN
105
n
62
GLN
105
A
GLU
106
n
63
GLU
106
A
ASP
107
n
64
ASP
107
A
VAL
108
n
65
VAL
108
A
ILE
109
n
66
ILE
109
A
SER
110
n
67
SER
110
A
LEU
111
n
68
LEU
111
A
TRP
112
n
69
TRP
112
A
ASP
113
n
70
ASP
113
A
GLN
114
n
71
GLN
114
A
SER
115
n
72
SER
115
A
LEU
116
n
73
LEU
116
A
GLN
117
n
74
GLN
117
A
PRO
118
n
75
PRO
118
A
CYS
119
n
76
CYS
119
A
VAL
120
n
77
VAL
120
A
LYS
121
n
78
LYS
121
A
LEU
122
n
79
LEU
122
A
THR
123
n
80
THR
123
A
GLY
124
n
81
GLY
124
A
GLY
198
n
82
GLY
198
A
SER
199
n
83
SER
199
A
VAL
200
n
84
VAL
200
A
ILE
201
n
85
ILE
201
A
LYS
202
n
86
LYS
202
A
GLN
203
n
87
GLN
203
A
ALA
204
n
88
ALA
204
A
CYS
205
n
89
CYS
205
A
PRO
206
n
90
PRO
206
A
LYS
207
n
91
LYS
207
A
ILE
208
n
92
ILE
208
A
SER
209
n
93
SER
209
A
PHE
210
n
94
PHE
210
A
ASP
211
n
95
ASP
211
A
PRO
212
n
96
PRO
212
A
ILE
213
n
97
ILE
213
A
PRO
214
n
98
PRO
214
A
ILE
215
n
99
ILE
215
A
HIS
216
n
100
HIS
216
A
TYR
217
n
101
TYR
217
A
CYS
218
n
102
CYS
218
A
THR
219
n
103
THR
219
A
PRO
220
n
104
PRO
220
A
ALA
221
n
105
ALA
221
A
GLY
222
n
106
GLY
222
A
TYR
223
n
107
TYR
223
A
VAL
224
n
108
VAL
224
A
ILE
225
n
109
ILE
225
A
LEU
226
n
110
LEU
226
A
LYS
227
n
111
LYS
227
A
CYS
228
n
112
CYS
228
A
ASN
229
n
113
ASN
229
A
ASP
230
n
114
ASP
230
A
LYS
231
n
115
LYS
231
A
ASN
232
n
116
ASN
232
A
PHE
233
n
117
PHE
233
A
ASN
234
n
118
ASN
234
A
GLY
235
n
119
GLY
235
A
THR
236
n
120
THR
236
A
GLY
237
n
121
GLY
237
A
PRO
238
n
122
PRO
238
A
CYS
239
n
123
CYS
239
A
LYS
240
n
124
LYS
240
A
ASN
241
n
125
ASN
241
A
VAL
242
n
126
VAL
242
A
SER
243
n
127
SER
243
A
SER
244
n
128
SER
244
A
VAL
245
n
129
VAL
245
A
GLN
246
n
130
GLN
246
A
CYS
247
n
131
CYS
247
A
THR
248
n
132
THR
248
A
HIS
249
n
133
HIS
249
A
GLY
250
n
134
GLY
250
A
ILE
251
n
135
ILE
251
A
LYS
252
n
136
LYS
252
A
PRO
253
n
137
PRO
253
A
VAL
254
n
138
VAL
254
A
VAL
255
n
139
VAL
255
A
SER
256
n
140
SER
256
A
THR
257
n
141
THR
257
A
GLN
258
n
142
GLN
258
A
LEU
259
n
143
LEU
259
A
LEU
260
n
144
LEU
260
A
LEU
261
n
145
LEU
261
A
ASN
262
n
146
ASN
262
A
GLY
263
n
147
GLY
263
A
SER
264
n
148
SER
264
A
LEU
265
n
149
LEU
265
A
ALA
266
n
150
ALA
266
A
GLU
267
n
151
GLU
267
A
GLU
268
n
152
GLU
268
A
GLU
269
n
153
GLU
269
A
ILE
270
n
154
ILE
270
A
ILE
271
n
155
ILE
271
A
ILE
272
n
156
ILE
272
A
ARG
273
n
157
ARG
273
A
SER
274
n
158
SER
274
A
GLU
275
n
159
GLU
275
A
ASN
276
n
160
ASN
276
A
LEU
277
n
161
LEU
277
A
THR
278
n
162
THR
278
A
ASN
279
n
163
ASN
279
A
ASN
280
n
164
ASN
280
A
ALA
281
n
165
ALA
281
A
LYS
282
n
166
LYS
282
A
THR
283
n
167
THR
283
A
ILE
284
n
168
ILE
284
A
ILE
285
n
169
ILE
285
A
VAL
286
n
170
VAL
286
A
HIS
287
n
171
HIS
287
A
LEU
288
n
172
LEU
288
A
ASN
289
n
173
ASN
289
A
LYS
290
n
174
LYS
290
A
SER
291
n
175
SER
291
A
VAL
292
n
176
VAL
292
A
GLU
293
n
177
GLU
293
A
ILE
294
n
178
ILE
294
A
ASN
295
n
179
ASN
295
A
CYS
296
n
180
CYS
296
A
THR
297
n
181
THR
297
A
ARG
298
n
182
ARG
298
A
PRO
299
n
183
PRO
299
A
SER
300
n
184
SER
300
A
ASN
301
n
185
ASN
301
A
n
186
318
A
n
187
319
A
n
188
320
A
n
189
321
A
n
190
322
A
n
191
323
A
GLY
324
n
192
GLY
324
A
ASP
325
n
193
ASP
325
A
ILE
326
n
194
ILE
326
A
ARG
327
n
195
ARG
327
A
LYS
328
n
196
LYS
328
A
ALA
329
n
197
ALA
329
A
TYR
330
n
198
TYR
330
A
CYS
331
n
199
CYS
331
A
GLU
332
n
200
GLU
332
A
ILE
333
n
201
ILE
333
A
ASN
334
n
202
ASN
334
A
GLY
335
n
203
GLY
335
A
THR
336
n
204
THR
336
A
LYS
337
n
205
LYS
337
A
TRP
338
n
206
TRP
338
A
ASN
339
n
207
ASN
339
A
LYS
340
n
208
LYS
340
A
VAL
341
n
209
VAL
341
A
LEU
342
n
210
LEU
342
A
LYS
343
n
211
LYS
343
A
GLN
344
n
212
GLN
344
A
VAL
345
n
213
VAL
345
A
THR
346
n
214
THR
346
A
GLU
347
n
215
GLU
347
A
LYS
348
n
216
LYS
348
A
LEU
349
n
217
LEU
349
A
LYS
350
n
218
LYS
350
A
GLU
351
n
219
GLU
351
A
HIS
352
n
220
HIS
352
A
PHE
353
n
221
PHE
353
A
ASN
354
n
222
ASN
354
A
ASN
355
n
223
ASN
355
A
LYS
357
n
224
LYS
357
A
THR
358
n
225
THR
358
A
ILE
359
n
226
ILE
359
A
ILE
360
n
227
ILE
360
A
PHE
361
n
228
PHE
361
A
GLN
362
n
229
GLN
362
A
PRO
363
n
230
PRO
363
A
PRO
364
n
231
PRO
364
A
SER
365
n
232
SER
365
A
GLY
366
n
233
GLY
366
A
GLY
367
n
234
GLY
367
A
ASP
368
n
235
ASP
368
A
LEU
369
n
236
LEU
369
A
GLU
370
n
237
GLU
370
A
ILE
371
n
238
ILE
371
A
THR
372
n
239
THR
372
A
MET
373
n
240
MET
373
A
HIS
374
n
241
HIS
374
A
SER
375
n
242
SER
375
A
PHE
376
n
243
PHE
376
A
ASN
377
n
244
ASN
377
A
CYS
378
n
245
CYS
378
A
ARG
379
n
246
ARG
379
A
GLY
380
n
247
GLY
380
A
GLU
381
n
248
GLU
381
A
PHE
382
n
249
PHE
382
A
PHE
383
n
250
PHE
383
A
TYR
384
n
251
TYR
384
A
CYS
385
n
252
CYS
385
A
ASN
386
n
253
ASN
386
A
THR
387
n
254
THR
387
A
THR
388
n
255
THR
388
A
GLN
389
n
256
GLN
389
A
LEU
390
n
257
LEU
390
A
PHE
391
n
258
PHE
391
A
ASN
392
n
259
ASN
392
A
ASN
393
n
260
ASN
393
A
THR
394
n
261
THR
394
A
CYS
395
n
262
CYS
395
A
ILE
396
n
263
ILE
396
A
n
264
403
A
n
265
404
A
n
266
405
A
n
267
406
A
n
268
407
A
n
269
408
A
n
270
409
A
n
271
410
A
ASN
411
n
272
ASN
411
A
GLY
412
n
273
GLY
412
A
THR
413
n
274
THR
413
A
ILE
414
n
275
ILE
414
A
THR
415
n
276
THR
415
A
LEU
416
n
277
LEU
416
A
PRO
417
n
278
PRO
417
A
CYS
418
n
279
CYS
418
A
LYS
419
n
280
LYS
419
A
ILE
420
n
281
ILE
420
A
LYS
421
n
282
LYS
421
A
GLN
422
n
283
GLN
422
A
ILE
423
n
284
ILE
423
A
ILE
424
n
285
ILE
424
A
ASN
425
n
286
ASN
425
A
MET
426
n
287
MET
426
A
TRP
427
n
288
TRP
427
A
GLN
428
n
289
GLN
428
A
GLY
429
n
290
GLY
429
A
THR
430
n
291
THR
430
A
GLY
431
n
292
GLY
431
A
GLN
432
n
293
GLN
432
A
ALA
433
n
294
ALA
433
A
MET
434
n
295
MET
434
A
TYR
435
n
296
TYR
435
A
ALA
436
n
297
ALA
436
A
PRO
437
n
298
PRO
437
A
PRO
438
n
299
PRO
438
A
ILE
439
n
300
ILE
439
A
ASP
440
n
301
ASP
440
A
GLY
441
n
302
GLY
441
A
LYS
442
n
303
LYS
442
A
ILE
443
n
304
ILE
443
A
ASN
444
n
305
ASN
444
A
CYS
445
n
306
CYS
445
A
VAL
446
n
307
VAL
446
A
SER
447
n
308
SER
447
A
ASN
448
n
309
ASN
448
A
ILE
449
n
310
ILE
449
A
THR
450
n
311
THR
450
A
GLY
451
n
312
GLY
451
A
ILE
452
n
313
ILE
452
A
LEU
453
n
314
LEU
453
A
LEU
454
n
315
LEU
454
A
THR
455
n
316
THR
455
A
ARG
456
n
317
ARG
456
A
ASP
457
n
318
ASP
457
A
GLY
458
n
319
GLY
458
A
GLY
459
n
320
GLY
459
A
ALA
460
n
321
ALA
460
A
ASN
461
n
322
ASN
461
A
ASN
462
n
323
ASN
462
A
THR
463
n
324
THR
463
A
SER
464
n
325
SER
464
A
ASN
465
n
326
ASN
465
A
GLU
466
n
327
GLU
466
A
THR
467
n
328
THR
467
A
PHE
468
n
329
PHE
468
A
ARG
469
n
330
ARG
469
A
PRO
470
n
331
PRO
470
A
GLY
471
n
332
GLY
471
A
GLY
472
n
333
GLY
472
A
GLY
473
n
334
GLY
473
A
ASN
474
n
335
ASN
474
A
ILE
475
n
336
ILE
475
A
LYS
476
n
337
LYS
476
A
ASP
477
n
338
ASP
477
A
ASN
478
n
339
ASN
478
A
TRP
479
n
340
TRP
479
A
ARG
480
n
341
ARG
480
A
SER
481
n
342
SER
481
A
GLU
482
n
343
GLU
482
A
LEU
483
n
344
LEU
483
A
TYR
484
n
345
TYR
484
A
LYS
485
n
346
LYS
485
A
TYR
486
n
347
TYR
486
A
LYS
487
n
348
LYS
487
A
VAL
488
n
349
VAL
488
A
VAL
489
n
350
VAL
489
A
GLN
490
n
351
GLN
490
A
ILE
491
n
352
ILE
491
A
GLU
492
n
353
GLU
492
A
VAL
44
n
1
VAL
44
B
TRP
45
n
2
TRP
45
B
LYS
46
n
3
LYS
46
B
ASP
47
n
4
ASP
47
B
ALA
48
n
5
ALA
48
B
ASP
49
n
6
ASP
49
B
THR
50
n
7
THR
50
B
THR
51
n
8
THR
51
B
LEU
52
n
9
LEU
52
B
PHE
53
n
10
PHE
53
B
CYS
54
n
11
CYS
54
B
ALA
55
n
12
ALA
55
B
SER
56
n
13
SER
56
B
ASP
57
n
14
ASP
57
B
ALA
58
n
15
ALA
58
B
LYS
59
n
16
LYS
59
B
ALA
60
n
17
ALA
60
B
HIS
61
n
18
HIS
61
B
GLU
62
n
19
GLU
62
B
THR
63
n
20
THR
63
B
GLU
64
n
21
GLU
64
B
VAL
65
n
22
VAL
65
B
HIS
66
n
23
HIS
66
B
ASN
67
n
24
ASN
67
B
VAL
68
n
25
VAL
68
B
TRP
69
n
26
TRP
69
B
ALA
70
n
27
ALA
70
B
THR
71
n
28
THR
71
B
HIS
72
n
29
HIS
72
B
ALA
73
n
30
ALA
73
B
CYS
74
n
31
CYS
74
B
VAL
75
n
32
VAL
75
B
PRO
76
n
33
PRO
76
B
THR
77
n
34
THR
77
B
ASP
78
n
35
ASP
78
B
PRO
79
n
36
PRO
79
B
ASN
80
n
37
ASN
80
B
PRO
81
n
38
PRO
81
B
GLN
82
n
39
GLN
82
B
GLU
83
n
40
GLU
83
B
ILE
84
n
41
ILE
84
B
HIS
85
n
42
HIS
85
B
LEU
86
n
43
LEU
86
B
GLU
87
n
44
GLU
87
B
ASN
88
n
45
ASN
88
B
VAL
89
n
46
VAL
89
B
THR
90
n
47
THR
90
B
GLU
91
n
48
GLU
91
B
ASN
92
n
49
ASN
92
B
PHE
93
n
50
PHE
93
B
ASN
94
n
51
ASN
94
B
MET
95
n
52
MET
95
B
TRP
96
n
53
TRP
96
B
LYS
97
n
54
LYS
97
B
ASN
98
n
55
ASN
98
B
ASN
99
n
56
ASN
99
B
MET
100
n
57
MET
100
B
VAL
101
n
58
VAL
101
B
GLU
102
n
59
GLU
102
B
GLN
103
n
60
GLN
103
B
MET
104
n
61
MET
104
B
GLN
105
n
62
GLN
105
B
GLU
106
n
63
GLU
106
B
ASP
107
n
64
ASP
107
B
VAL
108
n
65
VAL
108
B
ILE
109
n
66
ILE
109
B
SER
110
n
67
SER
110
B
LEU
111
n
68
LEU
111
B
TRP
112
n
69
TRP
112
B
ASP
113
n
70
ASP
113
B
GLN
114
n
71
GLN
114
B
SER
115
n
72
SER
115
B
LEU
116
n
73
LEU
116
B
GLN
117
n
74
GLN
117
B
PRO
118
n
75
PRO
118
B
CYS
119
n
76
CYS
119
B
VAL
120
n
77
VAL
120
B
LYS
121
n
78
LYS
121
B
LEU
122
n
79
LEU
122
B
THR
123
n
80
THR
123
B
GLY
124
n
81
GLY
124
B
GLY
198
n
82
GLY
198
B
SER
199
n
83
SER
199
B
VAL
200
n
84
VAL
200
B
ILE
201
n
85
ILE
201
B
LYS
202
n
86
LYS
202
B
GLN
203
n
87
GLN
203
B
ALA
204
n
88
ALA
204
B
CYS
205
n
89
CYS
205
B
PRO
206
n
90
PRO
206
B
LYS
207
n
91
LYS
207
B
ILE
208
n
92
ILE
208
B
SER
209
n
93
SER
209
B
PHE
210
n
94
PHE
210
B
ASP
211
n
95
ASP
211
B
PRO
212
n
96
PRO
212
B
ILE
213
n
97
ILE
213
B
PRO
214
n
98
PRO
214
B
ILE
215
n
99
ILE
215
B
HIS
216
n
100
HIS
216
B
TYR
217
n
101
TYR
217
B
CYS
218
n
102
CYS
218
B
THR
219
n
103
THR
219
B
PRO
220
n
104
PRO
220
B
ALA
221
n
105
ALA
221
B
GLY
222
n
106
GLY
222
B
TYR
223
n
107
TYR
223
B
VAL
224
n
108
VAL
224
B
ILE
225
n
109
ILE
225
B
LEU
226
n
110
LEU
226
B
LYS
227
n
111
LYS
227
B
CYS
228
n
112
CYS
228
B
ASN
229
n
113
ASN
229
B
ASP
230
n
114
ASP
230
B
LYS
231
n
115
LYS
231
B
ASN
232
n
116
ASN
232
B
PHE
233
n
117
PHE
233
B
ASN
234
n
118
ASN
234
B
GLY
235
n
119
GLY
235
B
THR
236
n
120
THR
236
B
GLY
237
n
121
GLY
237
B
PRO
238
n
122
PRO
238
B
CYS
239
n
123
CYS
239
B
LYS
240
n
124
LYS
240
B
ASN
241
n
125
ASN
241
B
VAL
242
n
126
VAL
242
B
SER
243
n
127
SER
243
B
SER
244
n
128
SER
244
B
VAL
245
n
129
VAL
245
B
GLN
246
n
130
GLN
246
B
CYS
247
n
131
CYS
247
B
THR
248
n
132
THR
248
B
HIS
249
n
133
HIS
249
B
GLY
250
n
134
GLY
250
B
ILE
251
n
135
ILE
251
B
LYS
252
n
136
LYS
252
B
PRO
253
n
137
PRO
253
B
VAL
254
n
138
VAL
254
B
VAL
255
n
139
VAL
255
B
SER
256
n
140
SER
256
B
THR
257
n
141
THR
257
B
GLN
258
n
142
GLN
258
B
LEU
259
n
143
LEU
259
B
LEU
260
n
144
LEU
260
B
LEU
261
n
145
LEU
261
B
ASN
262
n
146
ASN
262
B
GLY
263
n
147
GLY
263
B
SER
264
n
148
SER
264
B
LEU
265
n
149
LEU
265
B
ALA
266
n
150
ALA
266
B
GLU
267
n
151
GLU
267
B
GLU
268
n
152
GLU
268
B
GLU
269
n
153
GLU
269
B
ILE
270
n
154
ILE
270
B
ILE
271
n
155
ILE
271
B
ILE
272
n
156
ILE
272
B
ARG
273
n
157
ARG
273
B
SER
274
n
158
SER
274
B
GLU
275
n
159
GLU
275
B
ASN
276
n
160
ASN
276
B
LEU
277
n
161
LEU
277
B
THR
278
n
162
THR
278
B
ASN
279
n
163
ASN
279
B
ASN
280
n
164
ASN
280
B
ALA
281
n
165
ALA
281
B
LYS
282
n
166
LYS
282
B
THR
283
n
167
THR
283
B
ILE
284
n
168
ILE
284
B
ILE
285
n
169
ILE
285
B
VAL
286
n
170
VAL
286
B
HIS
287
n
171
HIS
287
B
LEU
288
n
172
LEU
288
B
ASN
289
n
173
ASN
289
B
LYS
290
n
174
LYS
290
B
SER
291
n
175
SER
291
B
VAL
292
n
176
VAL
292
B
GLU
293
n
177
GLU
293
B
ILE
294
n
178
ILE
294
B
ASN
295
n
179
ASN
295
B
CYS
296
n
180
CYS
296
B
THR
297
n
181
THR
297
B
ARG
298
n
182
ARG
298
B
PRO
299
n
183
PRO
299
B
SER
300
n
184
SER
300
B
ASN
301
n
185
ASN
301
B
n
186
318
B
n
187
319
B
n
188
320
B
n
189
321
B
n
190
322
B
n
191
323
B
GLY
324
n
192
GLY
324
B
ASP
325
n
193
ASP
325
B
ILE
326
n
194
ILE
326
B
ARG
327
n
195
ARG
327
B
LYS
328
n
196
LYS
328
B
ALA
329
n
197
ALA
329
B
TYR
330
n
198
TYR
330
B
CYS
331
n
199
CYS
331
B
GLU
332
n
200
GLU
332
B
ILE
333
n
201
ILE
333
B
ASN
334
n
202
ASN
334
B
GLY
335
n
203
GLY
335
B
THR
336
n
204
THR
336
B
LYS
337
n
205
LYS
337
B
TRP
338
n
206
TRP
338
B
ASN
339
n
207
ASN
339
B
LYS
340
n
208
LYS
340
B
VAL
341
n
209
VAL
341
B
LEU
342
n
210
LEU
342
B
LYS
343
n
211
LYS
343
B
GLN
344
n
212
GLN
344
B
VAL
345
n
213
VAL
345
B
THR
346
n
214
THR
346
B
GLU
347
n
215
GLU
347
B
LYS
348
n
216
LYS
348
B
LEU
349
n
217
LEU
349
B
LYS
350
n
218
LYS
350
B
GLU
351
n
219
GLU
351
B
HIS
352
n
220
HIS
352
B
PHE
353
n
221
PHE
353
B
ASN
354
n
222
ASN
354
B
ASN
355
n
223
ASN
355
B
LYS
357
n
224
LYS
357
B
THR
358
n
225
THR
358
B
ILE
359
n
226
ILE
359
B
ILE
360
n
227
ILE
360
B
PHE
361
n
228
PHE
361
B
GLN
362
n
229
GLN
362
B
PRO
363
n
230
PRO
363
B
PRO
364
n
231
PRO
364
B
SER
365
n
232
SER
365
B
GLY
366
n
233
GLY
366
B
GLY
367
n
234
GLY
367
B
ASP
368
n
235
ASP
368
B
LEU
369
n
236
LEU
369
B
GLU
370
n
237
GLU
370
B
ILE
371
n
238
ILE
371
B
THR
372
n
239
THR
372
B
MET
373
n
240
MET
373
B
HIS
374
n
241
HIS
374
B
SER
375
n
242
SER
375
B
PHE
376
n
243
PHE
376
B
ASN
377
n
244
ASN
377
B
CYS
378
n
245
CYS
378
B
ARG
379
n
246
ARG
379
B
GLY
380
n
247
GLY
380
B
GLU
381
n
248
GLU
381
B
PHE
382
n
249
PHE
382
B
PHE
383
n
250
PHE
383
B
TYR
384
n
251
TYR
384
B
CYS
385
n
252
CYS
385
B
ASN
386
n
253
ASN
386
B
THR
387
n
254
THR
387
B
THR
388
n
255
THR
388
B
GLN
389
n
256
GLN
389
B
LEU
390
n
257
LEU
390
B
PHE
391
n
258
PHE
391
B
ASN
392
n
259
ASN
392
B
ASN
393
n
260
ASN
393
B
THR
394
n
261
THR
394
B
CYS
395
n
262
CYS
395
B
ILE
396
n
263
ILE
396
B
n
264
403
B
n
265
404
B
n
266
405
B
n
267
406
B
n
268
407
B
n
269
408
B
n
270
409
B
n
271
410
B
ASN
411
n
272
ASN
411
B
GLY
412
n
273
GLY
412
B
THR
413
n
274
THR
413
B
ILE
414
n
275
ILE
414
B
THR
415
n
276
THR
415
B
LEU
416
n
277
LEU
416
B
PRO
417
n
278
PRO
417
B
CYS
418
n
279
CYS
418
B
LYS
419
n
280
LYS
419
B
ILE
420
n
281
ILE
420
B
LYS
421
n
282
LYS
421
B
GLN
422
n
283
GLN
422
B
ILE
423
n
284
ILE
423
B
ILE
424
n
285
ILE
424
B
ASN
425
n
286
ASN
425
B
MET
426
n
287
MET
426
B
TRP
427
n
288
TRP
427
B
GLN
428
n
289
GLN
428
B
GLY
429
n
290
GLY
429
B
THR
430
n
291
THR
430
B
GLY
431
n
292
GLY
431
B
GLN
432
n
293
GLN
432
B
ALA
433
n
294
ALA
433
B
MET
434
n
295
MET
434
B
TYR
435
n
296
TYR
435
B
ALA
436
n
297
ALA
436
B
PRO
437
n
298
PRO
437
B
PRO
438
n
299
PRO
438
B
ILE
439
n
300
ILE
439
B
ASP
440
n
301
ASP
440
B
GLY
441
n
302
GLY
441
B
LYS
442
n
303
LYS
442
B
ILE
443
n
304
ILE
443
B
ASN
444
n
305
ASN
444
B
CYS
445
n
306
CYS
445
B
VAL
446
n
307
VAL
446
B
SER
447
n
308
SER
447
B
ASN
448
n
309
ASN
448
B
ILE
449
n
310
ILE
449
B
THR
450
n
311
THR
450
B
GLY
451
n
312
GLY
451
B
ILE
452
n
313
ILE
452
B
LEU
453
n
314
LEU
453
B
LEU
454
n
315
LEU
454
B
THR
455
n
316
THR
455
B
ARG
456
n
317
ARG
456
B
ASP
457
n
318
ASP
457
B
GLY
458
n
319
GLY
458
B
GLY
459
n
320
GLY
459
B
ALA
460
n
321
ALA
460
B
ASN
461
n
322
ASN
461
B
ASN
462
n
323
ASN
462
B
THR
463
n
324
THR
463
B
SER
464
n
325
SER
464
B
ASN
465
n
326
ASN
465
B
GLU
466
n
327
GLU
466
B
THR
467
n
328
THR
467
B
PHE
468
n
329
PHE
468
B
ARG
469
n
330
ARG
469
B
PRO
470
n
331
PRO
470
B
GLY
471
n
332
GLY
471
B
GLY
472
n
333
GLY
472
B
GLY
473
n
334
GLY
473
B
ASN
474
n
335
ASN
474
B
ILE
475
n
336
ILE
475
B
LYS
476
n
337
LYS
476
B
ASP
477
n
338
ASP
477
B
ASN
478
n
339
ASN
478
B
TRP
479
n
340
TRP
479
B
ARG
480
n
341
ARG
480
B
SER
481
n
342
SER
481
B
GLU
482
n
343
GLU
482
B
LEU
483
n
344
LEU
483
B
TYR
484
n
345
TYR
484
B
LYS
485
n
346
LYS
485
B
TYR
486
n
347
TYR
486
B
LYS
487
n
348
LYS
487
B
VAL
488
n
349
VAL
488
B
VAL
489
n
350
VAL
489
B
GLN
490
n
351
GLN
490
B
ILE
491
n
352
ILE
491
B
GLU
492
n
353
GLU
492
B
2.6453
-0.4796
1.0333
3.5863
-0.8751
3.0171
-0.0543
0.0267
0.2427
0.0488
-0.0806
0.0005
-0.2915
-0.0838
0.1065
0.1882
-0.0038
0.0296
0.2198
-0.0268
0.2771
refined
18.2687
2.4974
39.3487
X-RAY DIFFRACTION
2.2110
-0.3252
1.9815
2.0541
-0.4033
3.4133
0.0275
-0.1834
-0.1368
0.0332
-0.0318
0.0044
0.2733
-0.1041
-0.0093
0.1869
0.0153
0.0589
0.2370
-0.0203
0.2758
refined
14.8954
-19.8112
40.7309
X-RAY DIFFRACTION
5.3767
-1.3951
-0.9618
3.4971
-0.1584
3.3274
0.0930
0.0942
0.2665
-0.2529
0.0519
0.2927
-0.1566
-0.4761
-0.1113
0.4949
0.0282
-0.0803
0.3058
0.0719
0.3286
refined
-12.4127
-16.3857
9.2280
X-RAY DIFFRACTION
4.0532
-1.0476
-0.6433
2.8045
0.4108
2.8538
-0.0165
-0.0928
-0.8375
-0.1800
0.1431
0.5830
0.7396
-0.4754
-0.0511
0.7341
-0.1272
-0.1130
0.3404
0.0871
0.5401
refined
-10.9850
-38.6429
12.0497
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain A and (resid 1:252 or resid 474:492)
X-RAY DIFFRACTION
2
chain A and resid 253:473
X-RAY DIFFRACTION
3
chain B and (resid 1:252 or resid 474:492)
X-RAY DIFFRACTION
4
chain B and resid 253:473
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
A
ASN
355
GLYCOSYLATION SITE
A
ASN
223
ASN
A
ASN
295
GLYCOSYLATION SITE
A
ASN
179
ASN
A
ASN
386
GLYCOSYLATION SITE
A
ASN
253
ASN
A
ASN
234
GLYCOSYLATION SITE
A
ASN
118
ASN
B
ASN
234
GLYCOSYLATION SITE
B
ASN
118
ASN
B
ASN
241
GLYCOSYLATION SITE
B
ASN
125
ASN
B
ASN
386
GLYCOSYLATION SITE
B
ASN
253
ASN
B
ASN
295
GLYCOSYLATION SITE
B
ASN
179
ASN
B
ASN
448
GLYCOSYLATION SITE
B
ASN
309
ASN
A
ASN
241
GLYCOSYLATION SITE
A
ASN
125
ASN
B
ASN
289
GLYCOSYLATION SITE
B
ASN
173
ASN
B
ASN
276
GLYCOSYLATION SITE
B
ASN
160
ASN
B
ASN
334
GLYCOSYLATION SITE
B
ASN
202
ASN
A
ASN
448
GLYCOSYLATION SITE
A
ASN
309
ASN
B
ASN
262
GLYCOSYLATION SITE
B
ASN
146
ASN
A
ASN
276
GLYCOSYLATION SITE
A
ASN
160
ASN
A
ASN
334
GLYCOSYLATION SITE
A
ASN
202
ASN
B
ASN
355
GLYCOSYLATION SITE
B
ASN
223
ASN
A
ASN
289
GLYCOSYLATION SITE
A
ASN
173
ASN
A
ASN
262
GLYCOSYLATION SITE
A
ASN
146
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
46
A
N
LYS
3
A
O
GLN
490
A
O
GLN
351
A
O
LYS
487
A
O
LYS
348
A
N
LEU
226
A
N
LEU
110
A
N
LYS
227
A
N
LYS
111
A
O
SER
243
A
O
SER
127
A
O
SER
244
A
O
SER
128
A
N
ILE
84
A
N
ILE
41
A
O
VAL
75
A
O
VAL
32
A
N
SER
56
A
N
SER
13
A
N
PHE
53
A
N
PHE
10
A
O
CYS
218
A
O
CYS
102
A
N
PHE
93
A
N
PHE
50
A
O
GLY
237
A
O
GLY
121
A
O
ILE
201
A
O
ILE
85
A
N
LYS
121
A
N
LYS
78
A
N
LEU
122
A
N
LEU
79
A
O
GLN
432
A
O
GLN
293
A
O
ALA
433
A
O
ALA
294
A
N
ILE
424
A
N
ILE
285
A
N
LEU
260
A
N
LEU
144
A
O
GLY
451
A
O
GLY
312
A
O
ILE
452
A
O
ILE
313
A
N
VAL
286
A
N
VAL
170
A
O
PHE
468
A
O
PHE
329
A
N
ILE
360
A
N
ILE
227
A
N
ILE
271
A
N
ILE
155
A
O
HIS
287
A
O
HIS
171
A
N
VAL
286
A
N
VAL
170
A
O
ILE
452
A
O
ILE
313
A
N
CYS
331
A
N
CYS
199
A
O
LEU
416
A
O
LEU
277
A
O
LYS
419
A
O
LYS
280
A
N
TYR
384
A
N
TYR
251
A
O
PHE
383
A
O
PHE
250
A
N
PHE
376
A
N
PHE
243
B
N
LYS
46
B
N
LYS
3
B
O
GLN
490
B
O
GLN
351
B
O
LYS
487
B
O
LYS
348
B
N
LEU
226
B
N
LEU
110
B
N
LYS
227
B
N
LYS
111
B
O
SER
243
B
O
SER
127
B
O
SER
244
B
O
SER
128
B
N
ILE
84
B
N
ILE
41
B
O
VAL
75
B
O
VAL
32
B
N
SER
56
B
N
SER
13
B
N
PHE
53
B
N
PHE
10
B
O
CYS
218
B
O
CYS
102
B
N
PHE
93
B
N
PHE
50
B
O
GLY
237
B
O
GLY
121
B
O
ILE
201
B
O
ILE
85
B
N
LYS
121
B
N
LYS
78
B
N
LEU
122
B
N
LEU
79
B
O
GLN
432
B
O
GLN
293
B
O
ALA
433
B
O
ALA
294
B
N
ILE
424
B
N
ILE
285
B
N
LEU
260
B
N
LEU
144
B
O
GLY
451
B
O
GLY
312
B
O
ILE
452
B
O
ILE
313
B
N
VAL
286
B
N
VAL
170
B
O
PHE
468
B
O
PHE
329
B
N
ILE
360
B
N
ILE
227
B
N
ILE
271
B
N
ILE
155
B
O
HIS
287
B
O
HIS
171
B
N
VAL
286
B
N
VAL
170
B
O
ILE
452
B
O
ILE
313
B
N
CYS
331
B
N
CYS
199
B
O
LEU
416
B
O
LEU
277
B
O
LYS
419
B
O
LYS
280
B
N
TYR
384
B
N
TYR
251
B
O
GLU
381
B
O
GLU
248
B
N
CYS
378
B
N
CYS
245
1
B
O4
NAG
503
Q
O4
NAG
1
1
N
1
A
GLY
318
A
GLY
186
1
Y
1
A
GLY
319
A
GLY
187
1
Y
1
A
SER
320
A
SER
188
1
Y
1
A
GLY
321
A
GLY
189
1
Y
1
A
SER
322
A
SER
190
1
Y
1
A
GLY
323
A
GLY
191
1
Y
1
A
GLY
403
A
GLY
264
1
Y
1
A
ASN
404
A
ASN
265
1
Y
1
A
GLU
405
A
GLU
266
1
Y
1
A
THR
406
A
THR
267
1
Y
1
A
MET
407
A
MET
268
1
Y
1
A
LYS
408
A
LYS
269
1
Y
1
A
GLY
409
A
GLY
270
1
Y
1
A
CYS
410
A
CYS
271
1
Y
1
B
GLY
318
B
GLY
186
1
Y
1
B
GLY
319
B
GLY
187
1
Y
1
B
SER
320
B
SER
188
1
Y
1
B
GLY
321
B
GLY
189
1
Y
1
B
SER
322
B
SER
190
1
Y
1
B
GLY
323
B
GLY
191
1
Y
1
B
GLY
403
B
GLY
264
1
Y
1
B
ASN
404
B
ASN
265
1
Y
1
B
GLU
405
B
GLU
266
1
Y
1
B
THR
406
B
THR
267
1
Y
1
B
MET
407
B
MET
268
1
Y
1
B
LYS
408
B
LYS
269
1
Y
1
B
GLY
409
B
GLY
270
1
Y
1
B
CYS
410
B
CYS
271
1
Y
1
B
B
O
O
HOH
HOH
633
638
1.85
1
A
A
O
O
HOH
HOH
731
733
1.86
1
A
A
ND2
O
ASN
HOH
334
750
1.94
1
B
B
OE1
O
GLU
HOH
106
652
1.94
1
B
B
ND2
C2
ASN
NAG
448
510
1.96
1
A
A
O
O
HOH
HOH
736
739
1.96
1
B
B
N
O
ILE
HOH
201
657
1.97
1
B
B
N
O
ASN
HOH
461
667
1.99
1
A
A
O
O
HOH
HOH
719
729
2.03
1
B
B
O
O
HOH
HOH
673
679
2.03
1
A
A
O
O
HOH
HOH
704
711
2.05
1
A
A
O3
O
NAG
HOH
503
655
2.05
1
A
A
NE
O
ARG
HOH
480
744
2.07
1
A
A
ND2
C2
ASN
NAG
334
507
2.07
1
A
A
O
O
HOH
HOH
691
708
2.09
1
A
A
O
O
HOH
HOH
619
674
2.09
1
A
A
O
O
HOH
HOH
605
706
2.09
1
A
A
ND2
C2
ASN
NAG
289
505
2.11
1
A
A
OD1
O
ASN
HOH
411
722
2.12
1
A
A
ND2
C2
ASN
NAG
355
508
2.12
1
B
B
N
O
ASN
HOH
462
667
2.12
1
A
A
OE2
O
GLU
HOH
62
720
2.13
1
A
A
O
O
HOH
HOH
725
737
2.16
1
B
B
OG1
O
THR
SER
358
464
2.16
1
B
B
ND2
C2
ASN
NAG
289
505
2.18
1
B
B
ND2
C2
ASN
NAG
386
509
2.18
1
A
A
NZ
O
LYS
HOH
59
741
2.19
1
B
B
O5
O
NAG
HOH
509
659
2.19
1
A
A
OD1
O
ASP
HOH
457
664
2.19
1
A
A
O
O
THR
HOH
236
694
2.19
1
A
ASP
211
-170.01
105.39
1
A
GLN
258
68.79
-63.99
1
A
GLU
268
-109.86
-101.88
1
A
SER
274
-172.26
140.28
1
A
ASN
276
-171.46
94.29
1
A
PHE
391
-113.36
54.50
1
A
CYS
395
-85.90
40.56
1
B
TRP
45
51.21
164.17
1
B
ASN
94
-153.43
88.44
1
B
LEU
116
-104.47
69.57
1
B
THR
123
-107.48
-109.10
1
B
ASP
211
-163.31
103.37
1
B
GLN
258
63.14
-63.14
1
B
GLU
268
-123.12
-103.20
1
B
ASN
276
-174.71
89.48
1
B
ASP
325
75.71
110.67
1
B
ASN
354
31.79
56.29
1
B
ASN
355
49.86
25.34
1
B
SER
365
-66.18
-70.47
1
B
ASN
392
-162.95
-27.74
57.4785
6.3929
-0.0000
-2.0810
0.5200
-0.0000
-6.9129
0.2325
0.1845
0.1870
2.2
27.739
2006
42494
39980
5.02
94.08
1.000
1.000
0.27
1
1.42
MOLECULAR REPLACEMENT
25.20
0.90
1.11
pdb entry 3TGT
ML
FLAT BULK SOLVENT MODEL
2.2
27.739
231
5894
355
0
5308
0.002
5811
0.521
7886
11.998
2186
0.034
915
0.002
978
0.2878
0.2475
2.2449
107
1924
67.00
0.3218
0.2363
2.3056
120
2359
82.00
0.2772
0.2231
2.3734
149
2542
90.00
0.2516
0.2246
2.4499
135
2677
93.00
0.2625
0.2125
2.5374
137
2786
96.00
0.2639
0.2090
2.6389
161
2783
98.00
0.2755
0.2044
2.7589
150
2815
98.00
0.2533
0.2054
2.9043
140
2833
99.00
0.2508
0.1984
3.0860
154
2854
99.00
0.2326
0.1938
3.3239
156
2846
99.00
0.2204
0.1815
3.6577
139
2856
98.00
0.1934
0.1672
4.1855
157
2840
98.00
0.1983
0.1525
5.2673
151
2902
99.00
0.2434
0.1787
27.7415
150
2957
99.00
40.71
2.2
50
4DVW
42164
40942
0.0
0.0
0.050
0.062
1
19.6
3.5
97.1
0.357
2.2
2.24
2.13
0.402
1
2.6
80.3
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8_1069
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASES
Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with MAE-II-167
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
monomer
A
GLU
64
A
GLU
21
HELX_P
A
CYS
74
A
CYS
31
1
1
11
A
ASN
98
A
ASN
55
HELX_P
A
LEU
116
A
LEU
73
1
2
19
A
GLY
335
A
GLY
203
HELX_P
A
PHE
353
A
PHE
221
1
3
19
A
ASP
368
A
ASP
235
HELX_P
A
MET
373
A
MET
240
1
4
6
A
ASN
392
A
ASN
259
HELX_P
A
ILE
396
A
ILE
263
5
5
5
A
ASN
474
A
ASN
335
HELX_P
A
TYR
484
A
TYR
345
1
6
11
B
GLU
64
B
GLU
21
HELX_P
B
ALA
73
B
ALA
30
1
7
10
B
ASN
98
B
ASN
55
HELX_P
B
LEU
116
B
LEU
73
1
8
19
B
GLY
335
B
GLY
203
HELX_P
B
HIS
352
B
HIS
220
1
9
18
B
ASP
368
B
ASP
235
HELX_P
B
MET
373
B
MET
240
1
10
6
B
THR
387
B
THR
254
HELX_P
B
PHE
391
B
PHE
258
5
11
5
B
ILE
475
B
ILE
336
HELX_P
B
TYR
484
B
TYR
345
1
12
10
disulf
2.036
A
CYS
54
A
SG
CYS
11
1_555
A
CYS
74
A
SG
CYS
31
1_555
disulf
2.028
A
CYS
119
A
SG
CYS
76
1_555
A
CYS
205
A
SG
CYS
89
1_555
disulf
2.033
A
CYS
218
A
SG
CYS
102
1_555
A
CYS
247
A
SG
CYS
131
1_555
disulf
2.036
A
CYS
228
A
SG
CYS
112
1_555
A
CYS
239
A
SG
CYS
123
1_555
disulf
2.032
A
CYS
296
A
SG
CYS
180
1_555
A
CYS
331
A
SG
CYS
199
1_555
disulf
2.031
A
CYS
378
A
SG
CYS
245
1_555
A
CYS
445
A
SG
CYS
306
1_555
disulf
2.032
A
CYS
385
A
SG
CYS
252
1_555
A
CYS
418
A
SG
CYS
279
1_555
disulf
2.032
B
CYS
54
B
SG
CYS
11
1_555
B
CYS
74
B
SG
CYS
31
1_555
disulf
2.029
B
CYS
119
B
SG
CYS
76
1_555
B
CYS
205
B
SG
CYS
89
1_555
disulf
2.032
B
CYS
218
B
SG
CYS
102
1_555
B
CYS
247
B
SG
CYS
131
1_555
disulf
2.032
B
CYS
228
B
SG
CYS
112
1_555
B
CYS
239
B
SG
CYS
123
1_555
disulf
2.032
B
CYS
296
B
SG
CYS
180
1_555
B
CYS
331
B
SG
CYS
199
1_555
disulf
2.030
B
CYS
378
B
SG
CYS
245
1_555
B
CYS
445
B
SG
CYS
306
1_555
disulf
2.030
B
CYS
385
B
SG
CYS
252
1_555
B
CYS
418
B
SG
CYS
279
1_555
covale
1.438
one
N-Glycosylation
A
ASN
234
A
ND2
ASN
118
1_555
A
NAG
501
C
C1
NAG
1_555
covale
1.439
one
N-Glycosylation
A
ASN
241
A
ND2
ASN
125
1_555
A
NAG
502
D
C1
NAG
1_555
covale
1.442
one
N-Glycosylation
A
ASN
262
A
ND2
ASN
146
1_555
A
NAG
503
E
C1
NAG
1_555
covale
1.441
one
N-Glycosylation
A
ASN
276
A
ND2
ASN
160
1_555
A
NAG
504
F
C1
NAG
1_555
covale
1.441
one
N-Glycosylation
A
ASN
289
A
ND2
ASN
173
1_555
A
NAG
505
G
C1
NAG
1_555
covale
1.438
one
N-Glycosylation
A
ASN
295
A
ND2
ASN
179
1_555
A
NAG
506
H
C1
NAG
1_555
covale
1.441
one
N-Glycosylation
A
ASN
334
A
ND2
ASN
202
1_555
A
NAG
507
I
C1
NAG
1_555
covale
1.433
one
N-Glycosylation
A
ASN
355
A
ND2
ASN
223
1_555
A
NAG
508
J
C1
NAG
1_555
covale
1.438
one
N-Glycosylation
A
ASN
386
A
ND2
ASN
253
1_555
A
NAG
509
K
C1
NAG
1_555
covale
1.441
one
N-Glycosylation
A
ASN
448
A
ND2
ASN
309
1_555
A
NAG
510
L
C1
NAG
1_555
covale
1.438
one
N-Glycosylation
B
ASN
234
B
ND2
ASN
118
1_555
B
NAG
501
O
C1
NAG
1_555
covale
1.438
one
N-Glycosylation
B
ASN
241
B
ND2
ASN
125
1_555
B
NAG
502
P
C1
NAG
1_555
covale
1.441
one
N-Glycosylation
B
ASN
262
B
ND2
ASN
146
1_555
B
NAG
503
Q
C1
NAG
1_555
covale
1.440
one
N-Glycosylation
B
ASN
276
B
ND2
ASN
160
1_555
B
NAG
504
R
C1
NAG
1_555
covale
1.440
one
N-Glycosylation
B
ASN
289
B
ND2
ASN
173
1_555
B
NAG
505
S
C1
NAG
1_555
covale
1.439
one
N-Glycosylation
B
ASN
295
B
ND2
ASN
179
1_555
B
NAG
506
T
C1
NAG
1_555
covale
1.441
one
N-Glycosylation
B
ASN
334
B
ND2
ASN
202
1_555
B
NAG
507
U
C1
NAG
1_555
covale
1.441
one
N-Glycosylation
B
ASN
355
B
ND2
ASN
223
1_555
B
NAG
508
V
C1
NAG
1_555
covale
1.439
one
N-Glycosylation
B
ASN
386
B
ND2
ASN
253
1_555
B
NAG
509
W
C1
NAG
1_555
covale
1.439
one
N-Glycosylation
B
ASN
448
B
ND2
ASN
309
1_555
B
NAG
510
X
C1
NAG
1_555
viral protein/transcription inhibitor
HIV-1 gp120, small molecule inhibitor, CD4 binding site, MAE-II-167, viral protein-transcription inhibitor complex
A0A0M3KKW9_9HIV1
UNP
1
1
A0A0M3KKW9
VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLT
GGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSEN
LTNNAKTIIVHLNKSVEINCTRPSNGGSGSGGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITM
HHFNCRGEFFYCNTTQLFNNTCIGNETMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGG
ANNTSNETFRPGGGNIKDNWRSELYKYKVVQIE
1
353
4DVW
44
492
A0A0M3KKW9
A
1
1
353
1
353
4DVW
44
492
A0A0M3KKW9
B
1
1
353
1
HIS
engineered mutation
SER
375
4DVW
A
A0A0M3KKW9
UNP
242
242
2
HIS
engineered mutation
SER
375
4DVW
B
A0A0M3KKW9
UNP
242
242
5
3
2
4
5
7
5
3
2
4
5
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TRP
45
A
TRP
2
A
ASP
47
A
ASP
4
A
TYR
486
A
TYR
347
A
ILE
491
A
ILE
352
A
TYR
223
A
TYR
107
A
CYS
228
A
CYS
112
A
VAL
242
A
VAL
126
A
VAL
245
A
VAL
129
A
GLU
83
A
GLU
40
A
LEU
86
A
LEU
43
A
VAL
75
A
VAL
32
A
PRO
76
A
PRO
33
A
PHE
53
A
PHE
10
A
SER
56
A
SER
13
A
HIS
216
A
HIS
100
A
CYS
218
A
CYS
102
A
GLU
91
A
GLU
48
A
ASN
94
A
ASN
51
A
THR
236
A
THR
120
A
CYS
239
A
CYS
123
A
SER
199
A
SER
83
A
LYS
202
A
LYS
86
A
VAL
120
A
VAL
77
A
THR
123
A
THR
80
A
GLN
432
A
GLN
293
A
MET
434
A
MET
295
A
ILE
423
A
ILE
284
A
ASN
425
A
ASN
286
A
LEU
259
A
LEU
143
A
LEU
261
A
LEU
145
A
ILE
443
A
ILE
304
A
ARG
456
A
ARG
317
A
ILE
284
A
ILE
168
A
ARG
298
A
ARG
182
A
ASN
465
A
ASN
326
A
PRO
470
A
PRO
331
A
THR
358
A
THR
225
A
PHE
361
A
PHE
228
A
ILE
271
A
ILE
155
A
ARG
273
A
ARG
157
A
ILE
284
A
ILE
168
A
ARG
298
A
ARG
182
A
ILE
443
A
ILE
304
A
ARG
456
A
ARG
317
A
LYS
328
A
LYS
196
A
ASN
334
A
ASN
202
A
THR
413
A
THR
274
A
LYS
421
A
LYS
282
A
GLU
381
A
GLU
248
A
CYS
385
A
CYS
252
A
HIS
374
A
HIS
241
A
CYS
378
A
CYS
245
B
LYS
46
B
LYS
3
B
ASP
47
B
ASP
4
B
TYR
486
B
TYR
347
B
GLN
490
B
GLN
351
B
TYR
223
B
TYR
107
B
CYS
228
B
CYS
112
B
VAL
242
B
VAL
126
B
VAL
245
B
VAL
129
B
ILE
84
B
ILE
41
B
LEU
86
B
LEU
43
B
CYS
74
B
CYS
31
B
PRO
76
B
PRO
33
B
PHE
53
B
PHE
10
B
SER
56
B
SER
13
B
HIS
216
B
HIS
100
B
CYS
218
B
CYS
102
B
GLU
91
B
GLU
48
B
ASN
94
B
ASN
51
B
THR
236
B
THR
120
B
CYS
239
B
CYS
123
B
VAL
200
B
VAL
84
B
LYS
202
B
LYS
86
B
VAL
120
B
VAL
77
B
LEU
122
B
LEU
79
B
GLN
432
B
GLN
293
B
MET
434
B
MET
295
B
ILE
423
B
ILE
284
B
ASN
425
B
ASN
286
B
LEU
259
B
LEU
143
B
LEU
261
B
LEU
145
B
ILE
443
B
ILE
304
B
ARG
456
B
ARG
317
B
ILE
284
B
ILE
168
B
ARG
298
B
ARG
182
B
ASN
465
B
ASN
326
B
PRO
470
B
PRO
331
B
THR
358
B
THR
225
B
PHE
361
B
PHE
228
B
ILE
271
B
ILE
155
B
ARG
273
B
ARG
157
B
ILE
284
B
ILE
168
B
ARG
298
B
ARG
182
B
ILE
443
B
ILE
304
B
ARG
456
B
ARG
317
B
LYS
328
B
LYS
196
B
ASN
334
B
ASN
202
B
THR
413
B
THR
274
B
ILE
420
B
ILE
281
B
GLU
381
B
GLU
248
B
CYS
385
B
CYS
252
B
HIS
374
B
HIS
241
B
CYS
378
B
CYS
245
4
P 1 21 1