0.020004 0.000000 0.000000 0.000000 0.012324 0.000000 0.000000 0.000000 0.008489 0.00000 0.00000 0.00000 Kim, H. Wachter, R.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 49.990 81.140 117.800 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C17 H16 N5 O4 -1 354.340 n 2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETHYL]-1-(CARBOXYMETHYL)-4-[(4-OXOCYCLOHEXA-2,5-DIEN-1-YLIDENE)METHYL]-1H-IMIDAZOL-5-OLATE CHROMOPHORE (HIS-TYR-GLY) L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N C N 75 N C N 76 N C N 77 N C N 78 N C N 79 N C N 80 N C Y 81 N C Y 82 N C N 83 N O Y 84 N N Y 85 N C Y 86 N N Y 87 N C Y 88 N N N 89 N C Y 90 N C Y 91 N N Y 92 N C N 93 N O N 94 N N N 95 S C N 96 N C N 97 N C N 98 N O N 99 N O N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N N N 117 R C N 118 N C N 119 N O N 120 N C N 121 N S N 122 N O N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N N N 131 S C N 132 N C N 133 N O N 134 N C N 135 N C N 136 N C N 137 N O N 138 N N N 139 N O N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N N N 151 S C N 152 N C N 153 N O N 154 N C N 155 N C N 156 N C N 157 N O N 158 N O N 159 N O N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 N C N 171 N C N 172 N O N 173 N O N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N N N 180 S C N 181 N C N 182 N O N 183 N C Y 184 N C Y 185 N N Y 186 N C Y 187 N C Y 188 N N N 189 N O N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N O N 201 N H N 202 N H N 203 N N N 204 S C N 205 N C N 206 N O N 207 S C N 208 N C N 209 N C N 210 N C N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N N N 226 S C N 227 N C N 228 N O N 229 N C N 230 N C N 231 N C N 232 N C N 233 N O N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C N 252 N C N 253 N C N 254 N C N 255 N N N 256 N O N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N N N 273 S C N 274 N C N 275 N O N 276 N C N 277 N C N 278 N S N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N N N 293 S C N 294 N C N 295 N O N 296 N C Y 297 N C Y 298 N C Y 299 N C Y 300 N C Y 301 N C Y 302 N C N 303 N O N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C N 320 N C N 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N N N 333 S C N 334 N C N 335 N O N 336 N C N 337 N O N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 R C N 351 N O N 352 N C N 353 N O N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N N Y 372 N C Y 373 N C Y 374 N C Y 375 N C Y 376 N C N 377 N O N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N N N 391 S C N 392 N C N 393 N O N 394 N C Y 395 N C Y 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N C N 401 N O N 402 N O N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N N N 415 S C N 416 N C N 417 N O N 418 N C N 419 N C N 420 N C N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N doub N 74 N sing N 75 N doub N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N doub N 82 N sing N 83 N sing Y 84 N doub Y 85 N sing Y 86 N doub Y 87 N sing N 88 N sing Y 89 N sing Y 90 N sing N 91 N sing Y 92 N sing N 93 N sing Y 94 N doub N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N doub N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing Y 184 N sing Y 185 N doub Y 186 N doub N 187 N sing Y 188 N sing N 189 N sing Y 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing Y 292 N doub Y 293 N sing Y 294 N sing N 295 N sing Y 296 N doub N 297 N sing Y 298 N doub N 299 N sing Y 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing Y 361 N doub Y 362 N sing Y 363 N sing N 364 N sing Y 365 N doub Y 366 N sing Y 367 N sing N 368 N sing Y 369 N sing Y 370 N doub N 371 N sing Y 372 N doub N 373 N sing Y 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing Y 389 N doub Y 390 N sing Y 391 N sing N 392 N sing Y 393 N doub N 394 N sing Y 395 N doub N 396 N sing Y 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N doub N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing US Biochemistry BICHAW 0033 0006-2960 52 8048 8059 10.1021/bi401000e 24134825 Acid-Base Catalysis and Crystal Structures of a Least Evolved Ancestral GFP-like Protein Undergoing Green-to-Red Photoconversion. 2013 10.2210/pdb4dxq/pdb pdb_00004dxq SEVERAL PEPTIDE LINKAGES HAVE DEVIATION FROM THE STANDARD VALUES 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2011-09-13 RIGAKU RAXIS IV++ GRAPHITE SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU300 26434.064 LEA Q38A GFP-LIKE PROTEINS 1 man polymer 18.015 water 160 nat water KAEDE-TYPE RED FLUORESCENT PROTEIN no yes MSVIKSDMKIKLRMEGTVNGHKFVIEGEGEGKPYEGTQTMNLKVKEGAPLPFAYDILTTVF(CR8)NRVFAKYPKHIPDY FKQSFPEGYSWERSMTFEDGGICTARNDITLEGDCFFNEIRFDGVNFPPNGPVMQKKTLKWEPSTEKMYVRDGVLTGDIN MALLLEGGGHYRCDFKTTYKAKKGVQLPDYHFVDHCIEILSHDKDYNNVKLYEHAVAHSGLPRQAKHHHHHH MSVIKSDMKIKLRMEGTVNGHKFVIEGEGEGKPYEGTQTMNLKVKEGAPLPFAYDILTTVFHYGNRVFAKYPKHIPDYFK QSFPEGYSWERSMTFEDGGICTARNDITLEGDCFFNEIRFDGVNFPPNGPVMQKKTLKWEPSTEKMYVRDGVLTGDINMA LLLEGGGHYRCDFKTTYKAKKGVQLPDYHFVDHCIEILSHDKDYNNVKLYEHAVAHSGLPRQAKHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n artificial sample 32630 Synthetic Construct 469008 Escherichia coli BL21(DE3) PLASMID pGEM-T 1 2.26 45.56 VAPOR DIFFUSION, HANGING DROP 7.5 0.085M tris, 0.085M sodium acetate, 16% PEG 4000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 atom_site atom_site_anisotrop chem_comp_atom chem_comp_bond database_2 pdbx_validate_polymer_linkage pdbx_validate_rmsd_bond struct_conn repository Initial release Database references Database references Advisory Atomic model Data collection Database references Derived calculations 1 0 2013-02-27 1 1 2013-10-30 1 2 2013-12-04 2 0 2023-11-15 _atom_site.auth_atom_id _atom_site.label_atom_id _atom_site_anisotrop.pdbx_auth_atom_id _atom_site_anisotrop.pdbx_label_atom_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_validate_polymer_linkage.auth_atom_id_1 _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr2_label_atom_id RCSB Y RCSB 2012-02-27 REL REL HOH water HOH 1 2 HOH HOH 301 A HOH 2 2 HOH HOH 302 A HOH 3 2 HOH HOH 303 A HOH 4 2 HOH HOH 304 A HOH 5 2 HOH HOH 305 A HOH 6 2 HOH HOH 306 A HOH 7 2 HOH HOH 307 A HOH 8 2 HOH HOH 308 A HOH 9 2 HOH HOH 309 A HOH 10 2 HOH HOH 310 A HOH 11 2 HOH HOH 311 A HOH 12 2 HOH HOH 312 A HOH 13 2 HOH HOH 313 A HOH 14 2 HOH HOH 314 A HOH 15 2 HOH HOH 315 A HOH 16 2 HOH HOH 316 A HOH 17 2 HOH HOH 317 A HOH 18 2 HOH HOH 318 A HOH 19 2 HOH HOH 319 A HOH 20 2 HOH HOH 320 A HOH 21 2 HOH HOH 321 A HOH 22 2 HOH HOH 322 A HOH 23 2 HOH HOH 323 A HOH 24 2 HOH HOH 324 A HOH 25 2 HOH HOH 325 A HOH 26 2 HOH HOH 326 A HOH 27 2 HOH HOH 327 A HOH 28 2 HOH HOH 328 A HOH 29 2 HOH HOH 329 A HOH 30 2 HOH HOH 330 A HOH 31 2 HOH HOH 331 A HOH 32 2 HOH HOH 332 A HOH 33 2 HOH HOH 333 A HOH 34 2 HOH HOH 334 A HOH 35 2 HOH HOH 335 A HOH 36 2 HOH HOH 336 A HOH 38 2 HOH HOH 337 A HOH 40 2 HOH HOH 338 A HOH 41 2 HOH HOH 339 A HOH 42 2 HOH HOH 340 A HOH 43 2 HOH HOH 341 A HOH 44 2 HOH HOH 342 A HOH 45 2 HOH HOH 343 A HOH 46 2 HOH HOH 344 A HOH 47 2 HOH HOH 345 A HOH 48 2 HOH HOH 346 A HOH 49 2 HOH HOH 347 A HOH 50 2 HOH HOH 348 A HOH 51 2 HOH HOH 349 A HOH 52 2 HOH HOH 350 A HOH 53 2 HOH HOH 351 A HOH 54 2 HOH HOH 352 A HOH 55 2 HOH HOH 353 A HOH 56 2 HOH HOH 354 A HOH 57 2 HOH HOH 355 A HOH 58 2 HOH HOH 356 A HOH 59 2 HOH HOH 357 A HOH 60 2 HOH HOH 358 A HOH 61 2 HOH HOH 359 A HOH 62 2 HOH HOH 360 A HOH 63 2 HOH HOH 361 A HOH 64 2 HOH HOH 362 A HOH 65 2 HOH HOH 363 A HOH 66 2 HOH HOH 364 A HOH 67 2 HOH HOH 365 A HOH 68 2 HOH HOH 366 A HOH 70 2 HOH HOH 367 A HOH 72 2 HOH HOH 368 A HOH 73 2 HOH HOH 369 A HOH 74 2 HOH HOH 370 A HOH 76 2 HOH HOH 371 A HOH 77 2 HOH HOH 372 A HOH 78 2 HOH HOH 373 A HOH 79 2 HOH HOH 374 A HOH 80 2 HOH HOH 375 A HOH 81 2 HOH HOH 376 A HOH 82 2 HOH HOH 377 A HOH 83 2 HOH HOH 378 A HOH 84 2 HOH HOH 379 A HOH 85 2 HOH HOH 380 A HOH 87 2 HOH HOH 381 A HOH 88 2 HOH HOH 382 A HOH 89 2 HOH HOH 383 A HOH 90 2 HOH HOH 384 A HOH 91 2 HOH HOH 385 A HOH 92 2 HOH HOH 386 A HOH 93 2 HOH HOH 387 A HOH 95 2 HOH HOH 388 A HOH 96 2 HOH HOH 389 A HOH 97 2 HOH HOH 390 A HOH 99 2 HOH HOH 391 A HOH 101 2 HOH HOH 392 A HOH 102 2 HOH HOH 393 A HOH 103 2 HOH HOH 394 A HOH 105 2 HOH HOH 395 A HOH 106 2 HOH HOH 396 A HOH 107 2 HOH HOH 397 A HOH 108 2 HOH HOH 398 A HOH 110 2 HOH HOH 399 A HOH 113 2 HOH HOH 400 A HOH 117 2 HOH HOH 401 A HOH 118 2 HOH HOH 402 A HOH 119 2 HOH HOH 403 A HOH 120 2 HOH HOH 404 A HOH 121 2 HOH HOH 405 A HOH 122 2 HOH HOH 406 A HOH 125 2 HOH HOH 407 A HOH 126 2 HOH HOH 408 A HOH 127 2 HOH HOH 409 A HOH 130 2 HOH HOH 410 A HOH 131 2 HOH HOH 411 A HOH 136 2 HOH HOH 412 A HOH 143 2 HOH HOH 413 A HOH 145 2 HOH HOH 414 A HOH 147 2 HOH HOH 415 A HOH 148 2 HOH HOH 416 A HOH 149 2 HOH HOH 417 A HOH 150 2 HOH HOH 418 A HOH 152 2 HOH HOH 419 A HOH 153 2 HOH HOH 420 A HOH 156 2 HOH HOH 421 A HOH 157 2 HOH HOH 422 A HOH 158 2 HOH HOH 423 A HOH 159 2 HOH HOH 424 A HOH 160 2 HOH HOH 425 A HOH 161 2 HOH HOH 426 A HOH 165 2 HOH HOH 427 A HOH 167 2 HOH HOH 428 A HOH 168 2 HOH HOH 429 A HOH 169 2 HOH HOH 430 A HOH 170 2 HOH HOH 431 A HOH 171 2 HOH HOH 432 A HOH 172 2 HOH HOH 433 A HOH 173 2 HOH HOH 434 A HOH 174 2 HOH HOH 435 A HOH 177 2 HOH HOH 436 A HOH 178 2 HOH HOH 437 A HOH 179 2 HOH HOH 438 A HOH 180 2 HOH HOH 439 A HOH 181 2 HOH HOH 440 A HOH 183 2 HOH HOH 441 A HOH 184 2 HOH HOH 442 A HOH 186 2 HOH HOH 443 A HOH 187 2 HOH HOH 444 A HOH 189 2 HOH HOH 445 A HOH 190 2 HOH HOH 446 A HOH 191 2 HOH HOH 447 A HOH 192 2 HOH HOH 448 A HOH 193 2 HOH HOH 449 A HOH 194 2 HOH HOH 450 A HOH 195 2 HOH HOH 451 A HOH 196 2 HOH HOH 452 A HOH 199 2 HOH HOH 453 A HOH 200 2 HOH HOH 454 A HOH 201 2 HOH HOH 455 A HOH 202 2 HOH HOH 456 A HOH 203 2 HOH HOH 457 A HOH 204 2 HOH HOH 458 A HOH 205 2 HOH HOH 459 A HOH 206 2 HOH HOH 460 A n 1 1 A n 2 2 A VAL 3 n 3 VAL 3 A ILE 4 n 4 ILE 4 A LYS 5 n 5 LYS 5 A SER 6 n 6 SER 6 A ASP 7 n 7 ASP 7 A MET 8 n 8 MET 8 A LYS 9 n 9 LYS 9 A ILE 10 n 10 ILE 10 A LYS 11 n 11 LYS 11 A LEU 12 n 12 LEU 12 A ARG 13 n 13 ARG 13 A MET 14 n 14 MET 14 A GLU 15 n 15 GLU 15 A GLY 16 n 16 GLY 16 A THR 17 n 17 THR 17 A VAL 18 n 18 VAL 18 A ASN 19 n 19 ASN 19 A GLY 20 n 20 GLY 20 A HIS 21 n 21 HIS 21 A LYS 22 n 22 LYS 22 A PHE 23 n 23 PHE 23 A VAL 24 n 24 VAL 24 A ILE 25 n 25 ILE 25 A GLU 26 n 26 GLU 26 A GLY 27 n 27 GLY 27 A GLU 28 n 28 GLU 28 A GLY 29 n 29 GLY 29 A GLU 30 n 30 GLU 30 A GLY 31 n 31 GLY 31 A LYS 32 n 32 LYS 32 A PRO 33 n 33 PRO 33 A TYR 34 n 34 TYR 34 A GLU 35 n 35 GLU 35 A GLY 36 n 36 GLY 36 A THR 37 n 37 THR 37 A ALA 38 n 38 GLN 38 A THR 39 n 39 THR 39 A MET 40 n 40 MET 40 A ASN 41 n 41 ASN 41 A LEU 42 n 42 LEU 42 A LYS 43 n 43 LYS 43 A VAL 44 n 44 VAL 44 A LYS 45 n 45 LYS 45 A GLU 46 n 46 GLU 46 A GLY 47 n 47 GLY 47 A ALA 48 n 48 ALA 48 A PRO 49 n 49 PRO 49 A LEU 50 n 50 LEU 50 A PRO 51 n 51 PRO 51 A PHE 52 n 52 PHE 52 A ALA 53 n 53 ALA 53 A TYR 54 n 54 TYR 54 A ASP 55 n 55 ASP 55 A ILE 56 n 56 ILE 56 A LEU 57 n 57 LEU 57 A THR 58 n 58 THR 58 A THR 59 n 59 THR 59 A VAL 60 n 60 VAL 60 A PHE 61 n 61 PHE 61 A CR8 63 n 62 CR8 63 A ASN 65 n 63 ASN 65 A ARG 66 n 64 ARG 66 A VAL 67 n 65 VAL 67 A PHE 68 n 66 PHE 68 A ALA 69 n 67 ALA 69 A LYS 70 n 68 LYS 70 A TYR 71 n 69 TYR 71 A PRO 72 n 70 PRO 72 A LYS 73 n 71 LYS 73 A HIS 74 n 72 HIS 74 A ILE 75 n 73 ILE 75 A PRO 76 n 74 PRO 76 A ASP 77 n 75 ASP 77 A TYR 78 n 76 TYR 78 A PHE 79 n 77 PHE 79 A LYS 80 n 78 LYS 80 A GLN 81 n 79 GLN 81 A SER 82 n 80 SER 82 A PHE 83 n 81 PHE 83 A PRO 84 n 82 PRO 84 A GLU 85 n 83 GLU 85 A GLY 86 n 84 GLY 86 A TYR 87 n 85 TYR 87 A SER 88 n 86 SER 88 A TRP 89 n 87 TRP 89 A GLU 90 n 88 GLU 90 A ARG 91 n 89 ARG 91 A SER 92 n 90 SER 92 A MET 93 n 91 MET 93 A THR 94 n 92 THR 94 A PHE 95 n 93 PHE 95 A GLU 96 n 94 GLU 96 A ASP 97 n 95 ASP 97 A GLY 98 n 96 GLY 98 A GLY 99 n 97 GLY 99 A ILE 100 n 98 ILE 100 A CYS 101 n 99 CYS 101 A THR 102 n 100 THR 102 A ALA 103 n 101 ALA 103 A ARG 104 n 102 ARG 104 A ASN 105 n 103 ASN 105 A ASP 106 n 104 ASP 106 A ILE 107 n 105 ILE 107 A THR 108 n 106 THR 108 A LEU 109 n 107 LEU 109 A GLU 110 n 108 GLU 110 A GLY 111 n 109 GLY 111 A ASP 112 n 110 ASP 112 A CYS 113 n 111 CYS 113 A PHE 114 n 112 PHE 114 A PHE 115 n 113 PHE 115 A ASN 116 n 114 ASN 116 A GLU 117 n 115 GLU 117 A ILE 118 n 116 ILE 118 A ARG 119 n 117 ARG 119 A PHE 120 n 118 PHE 120 A ASP 121 n 119 ASP 121 A GLY 122 n 120 GLY 122 A VAL 123 n 121 VAL 123 A ASN 124 n 122 ASN 124 A PHE 125 n 123 PHE 125 A PRO 126 n 124 PRO 126 A PRO 127 n 125 PRO 127 A ASN 128 n 126 ASN 128 A GLY 129 n 127 GLY 129 A PRO 130 n 128 PRO 130 A VAL 131 n 129 VAL 131 A MET 132 n 130 MET 132 A GLN 133 n 131 GLN 133 A LYS 134 n 132 LYS 134 A LYS 135 n 133 LYS 135 A THR 136 n 134 THR 136 A LEU 137 n 135 LEU 137 A LYS 138 n 136 LYS 138 A TRP 139 n 137 TRP 139 A GLU 140 n 138 GLU 140 A PRO 141 n 139 PRO 141 A SER 142 n 140 SER 142 A THR 143 n 141 THR 143 A GLU 144 n 142 GLU 144 A LYS 145 n 143 LYS 145 A MET 146 n 144 MET 146 A TYR 147 n 145 TYR 147 A VAL 148 n 146 VAL 148 A ARG 149 n 147 ARG 149 A ASP 150 n 148 ASP 150 A GLY 151 n 149 GLY 151 A VAL 152 n 150 VAL 152 A LEU 153 n 151 LEU 153 A THR 154 n 152 THR 154 A GLY 155 n 153 GLY 155 A ASP 156 n 154 ASP 156 A ILE 157 n 155 ILE 157 A ASN 158 n 156 ASN 158 A MET 159 n 157 MET 159 A ALA 160 n 158 ALA 160 A LEU 161 n 159 LEU 161 A LEU 162 n 160 LEU 162 A LEU 163 n 161 LEU 163 A GLU 164 n 162 GLU 164 A GLY 165 n 163 GLY 165 A GLY 166 n 164 GLY 166 A GLY 167 n 165 GLY 167 A HIS 168 n 166 HIS 168 A TYR 169 n 167 TYR 169 A ARG 170 n 168 ARG 170 A CYS 171 n 169 CYS 171 A ASP 172 n 170 ASP 172 A PHE 173 n 171 PHE 173 A LYS 174 n 172 LYS 174 A THR 175 n 173 THR 175 A THR 176 n 174 THR 176 A TYR 177 n 175 TYR 177 A LYS 178 n 176 LYS 178 A ALA 179 n 177 ALA 179 A LYS 180 n 178 LYS 180 A LYS 181 n 179 LYS 181 A GLY 182 n 180 GLY 182 A VAL 183 n 181 VAL 183 A GLN 184 n 182 GLN 184 A LEU 185 n 183 LEU 185 A PRO 186 n 184 PRO 186 A ASP 187 n 185 ASP 187 A TYR 188 n 186 TYR 188 A HIS 189 n 187 HIS 189 A PHE 190 n 188 PHE 190 A VAL 191 n 189 VAL 191 A ASP 192 n 190 ASP 192 A HIS 193 n 191 HIS 193 A CYS 194 n 192 CYS 194 A ILE 195 n 193 ILE 195 A GLU 196 n 194 GLU 196 A ILE 197 n 195 ILE 197 A LEU 198 n 196 LEU 198 A SER 199 n 197 SER 199 A HIS 200 n 198 HIS 200 A ASP 201 n 199 ASP 201 A LYS 202 n 200 LYS 202 A ASP 203 n 201 ASP 203 A TYR 204 n 202 TYR 204 A ASN 205 n 203 ASN 205 A ASN 206 n 204 ASN 206 A VAL 207 n 205 VAL 207 A LYS 208 n 206 LYS 208 A LEU 209 n 207 LEU 209 A TYR 210 n 208 TYR 210 A GLU 211 n 209 GLU 211 A HIS 212 n 210 HIS 212 A ALA 213 n 211 ALA 213 A VAL 214 n 212 VAL 214 A ALA 215 n 213 ALA 215 A HIS 216 n 214 HIS 216 A SER 217 n 215 SER 217 A GLY 218 n 216 GLY 218 A LEU 219 n 217 LEU 219 A n 218 220 A n 219 221 A n 220 222 A n 221 223 A n 222 224 A n 223 225 A n 224 226 A n 225 227 A n 226 228 A n 227 229 A n 228 230 A author_and_software_defined_assembly PISA 4 tetrameric 8290 -11 31730 A CR8 63 A CR8 62 HIS A CR8 63 A CR8 62 TYR A CR8 63 A CR8 62 GLY 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_545 -x,-y-1,z crystal symmetry operation 0.0000000000 -81.1400000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_555 -x,y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_545 x,-y-1,-z crystal symmetry operation 0.0000000000 -81.1400000000 0.0000000000 A N LYS 138 A N LYS 136 A O LEU 162 A O LEU 160 A N LEU 153 A N LEU 151 A O TYR 177 A O TYR 175 A O LYS 178 A O LYS 176 A N SER 88 A N SER 86 A N MET 93 A N MET 91 A O CYS 101 A O CYS 99 A N THR 102 A N THR 100 A O ASP 121 A O ASP 119 A O PHE 114 A O PHE 112 A N LYS 9 A N LYS 9 A N MET 14 A N MET 14 A O ILE 25 A O ILE 25 A N GLU 26 A N GLU 26 A O LYS 43 A O LYS 43 A N LEU 42 A N LEU 42 A O VAL 207 A O VAL 205 A O TYR 210 A O TYR 208 A N GLU 196 A N GLU 194 A O VAL 191 A O VAL 189 A N GLU 144 A N GLU 142 A N TYR 147 A N TYR 145 A O THR 154 A O THR 152 1 A CG GLN 38 A CG GLN 38 1 Y 1 A CD GLN 38 A CD GLN 38 1 Y 1 A OE1 GLN 38 A OE1 GLN 38 1 Y 1 A NE2 GLN 38 A NE2 GLN 38 1 Y 1 A CG GLU 196 A CG GLU 194 0 Y 1 A MET 1 A MET 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A PRO 220 A PRO 218 1 Y 1 A ARG 221 A ARG 219 1 Y 1 A GLN 222 A GLN 220 1 Y 1 A ALA 223 A ALA 221 1 Y 1 A LYS 224 A LYS 222 1 Y 1 A HIS 225 A HIS 223 1 Y 1 A HIS 226 A HIS 224 1 Y 1 A HIS 227 A HIS 225 1 Y 1 A HIS 228 A HIS 226 1 Y 1 A HIS 229 A HIS 227 1 Y 1 A HIS 230 A HIS 228 1 Y 1 A A OG O SER HOH 217 393 2.07 1 A A OD2 O ASP HOH 150 390 2.13 1 A GLU 196 0.230 SIDE CHAIN 1 A A C3 N CR8 ASN 63 65 2.28 1 -15.97 2.50 113.10 97.13 A A A N CA C GLY GLY GLY 166 166 166 N 1 -13.35 2.10 122.30 108.95 A A A C N CA GLY GLY GLY 166 167 167 Y 1 -16.40 2.20 113.40 97.00 A A A CA CB CG GLU GLU GLU 196 196 196 N 1 -41.72 2.00 118.30 76.58 A A A CG CD OE2 GLU GLU GLU 196 196 196 N 1 A A CB CG GLU GLU 196 196 0.348 0.019 1.517 1.865 N 1 A A CG CD GLU GLU 196 196 -0.267 0.015 1.515 1.248 N 1 A ASP 150 39.52 49.87 1 A TYR 188 -39.66 127.54 31.473 -0.04 0.00 0.00 -0.17 0.00 0.21 0.958 0.934 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.23617 0.18538 0.18795 1.95 30.88 898 16950 5.0 99.83 8.207 0.106 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.157 0.80 0.80 1.40 MAXIMUM LIKELIHOOD WITH PHASES MASK 1.95 30.88 160 1901 0 0 1741 0.024 0.022 1786 1.895 1.970 2407 7.087 5.000 212 34.647 24.217 83 16.299 15.000 304 12.770 15.000 7 0.130 0.200 246 0.010 0.021 1365 1.788 1.500 1062 2.542 2.000 1710 3.768 3.000 724 4.942 4.500 697 2.620 3.000 1786 6.071 3.000 160 5.538 3.000 1740 0.309 0.266 2.001 65 1245 20 99.92 1.95 34.50 4DXQ 101622 17887 3.0 2.0 0.060 1 8.6 5.7 100 0.350 1.95 2.06 2.2 1 5.7 100 data collection CrystalClear phasing PHASER refinement REFMAC 5.5.0110 data reduction MOSFLM data scaling SCALA Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, LEA Q38A 1 N N 2 N N A TYR 54 A TYR 54 HELX_P A THR 59 A THR 59 1 1 6 A ASP 77 A ASP 75 HELX_P A SER 82 A SER 80 1 2 6 covale 1.515 both A PHE 61 A C PHE 61 1_555 A CR8 63 A N1 CR8 62 1_555 LUMINESCENT PROTEIN BETA BARREL, LUMINESCENT PROTEIN A ALA 48 A ALA 48 1 A PRO 49 A PRO 49 -4.86 A PHE 83 A PHE 81 1 A PRO 84 A PRO 82 5.25 4DXQ PDB 1 4DXQ 1 230 4DXQ 1 230 4DXQ A 1 1 228 13 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 136 A THR 134 A TRP 139 A TRP 137 A VAL 152 A VAL 150 A LEU 163 A LEU 161 A HIS 168 A HIS 166 A ALA 179 A ALA 177 A TYR 87 A TYR 85 A PHE 95 A PHE 93 A ILE 100 A ILE 98 A GLU 110 A GLU 108 A CYS 113 A CYS 111 A VAL 123 A VAL 121 A MET 8 A MET 8 A VAL 18 A VAL 18 A HIS 21 A HIS 21 A LYS 32 A LYS 32 A THR 37 A THR 37 A GLU 46 A GLU 46 A ASN 206 A ASN 204 A HIS 216 A HIS 214 A HIS 189 A HIS 187 A HIS 200 A HIS 198 A SER 142 A SER 140 A ARG 149 A ARG 147 A VAL 152 A VAL 150 A LEU 163 A LEU 161 23 I 2 2 2