HEADER DNA 28-FEB-12 4DY8 TITLE INTERACTIONS OF MN2+ WITH A NON-SELF-COMPLEMENTARY Z-TYPE DNA DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*CP*GP*CP*GP*TP*G)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(P*TP*G)-3'); COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 SYNTHETIC: YES KEYWDS Z-TYPE DNA DOUBLE HELICES, MANGANESE IONS, DNA EXPDTA X-RAY DIFFRACTION AUTHOR P.K.MANDAL,S.VENKADESH,N.GAUTHAM REVDAT 3 20-MAR-24 4DY8 1 REMARK LINK REVDAT 2 12-DEC-12 4DY8 1 JRNL REVDAT 1 28-NOV-12 4DY8 0 JRNL AUTH P.K.MANDAL,S.VENKADESH,N.GAUTHAM JRNL TITL INTERACTIONS OF MN(2+) WITH A NON-SELF-COMPLEMENTARY Z-TYPE JRNL TITL 2 DNA DUPLEX JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 1420 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 23192018 JRNL DOI 10.1107/S1744309112041759 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 2938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 141 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 211 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 5 REMARK 3 BIN FREE R VALUE : 0.1180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 321 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.042 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.035 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.748 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 357 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 544 ; 2.341 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 61 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 170 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 357 ; 2.293 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 544 ; 2.651 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.947 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H-K, K, -L REMARK 3 TWIN FRACTION : 0.053 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000070932. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3133 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.860 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 4.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.98 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : 0.30000 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 25.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% METHYL PENTANE DIOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.63467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.81733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.22600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 7.40867 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.04333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 2300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 1070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 4 O3' DG A 4 C3' -0.052 REMARK 500 DT C 13 P DT C 13 O5' -0.084 REMARK 500 DG C 14 O3' DG C 14 C3' -0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 3 N1 - C2 - O2 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG A 4 O4' - C1' - C2' ANGL. DEV. = 3.7 DEGREES REMARK 500 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC B 7 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG B 8 O4' - C1' - C2' ANGL. DEV. = 3.0 DEGREES REMARK 500 DC B 9 O3' - P - O5' ANGL. DEV. = -12.6 DEGREES REMARK 500 DC B 9 O3' - P - OP1 ANGL. DEV. = 7.6 DEGREES REMARK 500 DC B 9 P - O5' - C5' ANGL. DEV. = 9.6 DEGREES REMARK 500 DC B 9 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG B 12 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 DT C 13 C4 - C5 - C7 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT D 15 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG D 16 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DWY RELATED DB: PDB REMARK 900 THE SAME OLIGONUCLEOTIDE SEQUENCE CO-CRYSTALLIZED WITH MN2+ IN P21 REMARK 900 SPACE GROUP DBREF 4DY8 A 1 6 PDB 4DY8 4DY8 1 6 DBREF 4DY8 B 7 12 PDB 4DY8 4DY8 7 12 DBREF 4DY8 C 13 14 PDB 4DY8 4DY8 13 14 DBREF 4DY8 D 15 16 PDB 4DY8 4DY8 15 16 SEQRES 1 A 6 DC DA DC DG DC DG SEQRES 1 B 6 DC DG DC DG DT DG SEQRES 1 C 2 DT DG SEQRES 1 D 2 DT DG HET MN A 101 2 HETNAM MN MANGANESE (II) ION FORMUL 5 MN MN 2+ FORMUL 6 HOH *34(H2 O) LINK O6 DG A 4 MN A MN A 101 1555 1555 2.74 LINK MN B MN A 101 O6 DG D 16 1555 1555 2.57 SITE 1 AC1 2 DG A 4 DG D 16 CRYST1 35.213 35.213 44.452 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028399 0.016396 0.000000 0.00000 SCALE2 0.000000 0.032792 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022496 0.00000 ATOM 1 O5' DC A 1 -9.004 8.618 10.454 1.00 9.54 O ATOM 2 C5' DC A 1 -7.840 8.676 9.655 1.00 15.13 C ATOM 3 C4' DC A 1 -7.418 10.109 9.406 1.00 17.93 C ATOM 4 O4' DC A 1 -8.541 10.924 8.937 1.00 18.86 O ATOM 5 C3' DC A 1 -6.866 10.808 10.633 1.00 17.89 C ATOM 6 O3' DC A 1 -5.847 11.679 10.289 1.00 20.10 O ATOM 7 C2' DC A 1 -8.074 11.629 11.078 1.00 16.49 C ATOM 8 C1' DC A 1 -8.598 12.100 9.736 1.00 18.27 C ATOM 9 N1 DC A 1 -10.005 12.590 9.820 1.00 17.31 N ATOM 10 C2 DC A 1 -10.301 13.921 10.112 1.00 17.07 C ATOM 11 O2 DC A 1 -9.379 14.728 10.315 1.00 16.10 O ATOM 12 N3 DC A 1 -11.620 14.277 10.182 1.00 17.19 N ATOM 13 C4 DC A 1 -12.596 13.376 9.964 1.00 17.67 C ATOM 14 N4 DC A 1 -13.872 13.766 10.015 1.00 16.32 N ATOM 15 C5 DC A 1 -12.290 12.030 9.642 1.00 16.37 C ATOM 16 C6 DC A 1 -11.002 11.694 9.593 1.00 16.95 C ATOM 17 P DA A 2 -4.322 11.248 10.401 1.00 16.57 P ATOM 18 OP1 DA A 2 -4.042 10.368 11.565 1.00 14.57 O ATOM 19 OP2 DA A 2 -3.545 12.509 10.191 1.00 19.06 O ATOM 20 O5' DA A 2 -4.154 10.376 9.096 1.00 16.15 O ATOM 21 C5' DA A 2 -4.323 10.944 7.836 1.00 19.19 C ATOM 22 C4' DA A 2 -4.308 9.834 6.838 1.00 19.27 C ATOM 23 O4' DA A 2 -5.448 9.001 7.014 1.00 20.89 O ATOM 24 C3' DA A 2 -4.417 10.390 5.441 1.00 21.86 C ATOM 25 O3' DA A 2 -3.077 10.491 5.053 1.00 24.35 O ATOM 26 C2' DA A 2 -5.189 9.325 4.669 1.00 22.30 C ATOM 27 C1' DA A 2 -5.905 8.540 5.768 1.00 22.31 C ATOM 28 N9 DA A 2 -7.348 8.691 5.779 1.00 22.54 N ATOM 29 C8 DA A 2 -8.279 7.700 5.696 1.00 20.34 C ATOM 30 N7 DA A 2 -9.503 8.151 5.721 1.00 22.42 N ATOM 31 C5 DA A 2 -9.378 9.525 5.822 1.00 23.67 C ATOM 32 C6 DA A 2 -10.299 10.612 5.893 1.00 24.01 C ATOM 33 N6 DA A 2 -11.640 10.513 5.871 1.00 23.03 N ATOM 34 N1 DA A 2 -9.779 11.856 5.993 1.00 22.95 N ATOM 35 C2 DA A 2 -8.459 12.037 6.023 1.00 22.13 C ATOM 36 N3 DA A 2 -7.512 11.113 5.957 1.00 22.31 N ATOM 37 C4 DA A 2 -8.039 9.877 5.862 1.00 22.89 C ATOM 38 P DC A 3 -2.427 11.878 4.667 1.00 25.80 P ATOM 39 OP1 DC A 3 -1.031 11.629 4.211 1.00 23.90 O ATOM 40 OP2 DC A 3 -2.741 12.851 5.753 1.00 19.12 O ATOM 41 O5' DC A 3 -3.257 12.175 3.309 1.00 22.49 O ATOM 42 C5' DC A 3 -2.781 13.021 2.257 1.00 20.77 C ATOM 43 C4' DC A 3 -3.740 14.171 1.984 1.00 19.54 C ATOM 44 O4' DC A 3 -5.018 13.665 1.512 1.00 16.49 O ATOM 45 C3' DC A 3 -4.036 15.002 3.232 1.00 18.17 C ATOM 46 O3' DC A 3 -4.314 16.363 2.923 1.00 18.42 O ATOM 47 C2' DC A 3 -5.282 14.286 3.738 1.00 15.73 C ATOM 48 C1' DC A 3 -6.021 14.113 2.405 1.00 13.64 C ATOM 49 N1 DC A 3 -7.150 13.103 2.427 1.00 15.26 N ATOM 50 C2 DC A 3 -8.508 13.482 2.644 1.00 11.64 C ATOM 51 O2 DC A 3 -8.851 14.660 2.831 1.00 14.86 O ATOM 52 N3 DC A 3 -9.436 12.491 2.656 1.00 15.52 N ATOM 53 C4 DC A 3 -9.081 11.215 2.463 1.00 12.96 C ATOM 54 N4 DC A 3 -10.060 10.312 2.488 1.00 10.47 N ATOM 55 C5 DC A 3 -7.722 10.805 2.248 1.00 15.10 C ATOM 56 C6 DC A 3 -6.805 11.786 2.248 1.00 14.34 C ATOM 57 P DG A 4 -3.160 17.451 2.944 1.00 17.30 P ATOM 58 OP1 DG A 4 -2.529 17.251 4.273 1.00 15.96 O ATOM 59 OP2 DG A 4 -3.708 18.781 2.671 1.00 18.65 O ATOM 60 O5' DG A 4 -2.133 16.946 1.833 1.00 17.82 O ATOM 61 C5' DG A 4 -2.405 17.150 0.445 1.00 19.29 C ATOM 62 C4' DG A 4 -1.401 16.562 -0.522 1.00 20.51 C ATOM 63 O4' DG A 4 -1.184 15.146 -0.382 1.00 20.37 O ATOM 64 C3' DG A 4 -1.951 16.713 -1.922 1.00 22.45 C ATOM 65 O3' DG A 4 -1.499 17.922 -2.372 1.00 26.96 O ATOM 66 C2' DG A 4 -1.393 15.571 -2.750 1.00 21.20 C ATOM 67 C1' DG A 4 -1.264 14.525 -1.657 1.00 20.56 C ATOM 68 N9 DG A 4 -2.315 13.509 -1.669 1.00 20.00 N ATOM 69 C8 DG A 4 -2.037 12.180 -1.817 1.00 20.20 C ATOM 70 N7 DG A 4 -3.062 11.398 -1.803 1.00 21.52 N ATOM 71 C5 DG A 4 -4.115 12.265 -1.638 1.00 20.53 C ATOM 72 C6 DG A 4 -5.486 11.946 -1.541 1.00 19.05 C ATOM 73 O6 DG A 4 -6.002 10.827 -1.608 1.00 19.14 O ATOM 74 N1 DG A 4 -6.265 13.078 -1.340 1.00 17.02 N ATOM 75 C2 DG A 4 -5.776 14.351 -1.296 1.00 15.41 C ATOM 76 N2 DG A 4 -6.711 15.272 -1.120 1.00 15.15 N ATOM 77 N3 DG A 4 -4.478 14.679 -1.362 1.00 16.63 N ATOM 78 C4 DG A 4 -3.690 13.581 -1.548 1.00 18.98 C ATOM 79 P DC A 5 -2.566 19.009 -2.819 1.00 30.14 P ATOM 80 OP1 DC A 5 -1.754 20.127 -3.321 1.00 30.37 O ATOM 81 OP2 DC A 5 -3.582 19.280 -1.774 1.00 29.67 O ATOM 82 O5' DC A 5 -3.236 18.335 -4.106 1.00 26.21 O ATOM 83 C5' DC A 5 -3.566 19.158 -5.216 1.00 21.76 C ATOM 84 C4' DC A 5 -5.047 19.034 -5.512 1.00 18.60 C ATOM 85 O4' DC A 5 -5.294 17.702 -6.042 1.00 18.31 O ATOM 86 C3' DC A 5 -6.009 19.208 -4.340 1.00 17.27 C ATOM 87 O3' DC A 5 -7.264 19.697 -4.796 1.00 18.37 O ATOM 88 C2' DC A 5 -6.158 17.780 -3.826 1.00 18.80 C ATOM 89 C1' DC A 5 -6.108 16.995 -5.121 1.00 17.84 C ATOM 90 N1 DC A 5 -5.671 15.562 -5.004 1.00 18.88 N ATOM 91 C2 DC A 5 -6.667 14.591 -4.819 1.00 16.20 C ATOM 92 O2 DC A 5 -7.829 14.967 -4.720 1.00 12.47 O ATOM 93 N3 DC A 5 -6.337 13.286 -4.732 1.00 17.98 N ATOM 94 C4 DC A 5 -5.049 12.924 -4.831 1.00 16.14 C ATOM 95 N4 DC A 5 -4.772 11.627 -4.745 1.00 17.12 N ATOM 96 C5 DC A 5 -4.016 13.888 -5.025 1.00 18.06 C ATOM 97 C6 DC A 5 -4.365 15.187 -5.113 1.00 18.56 C ATOM 98 P DG A 6 -7.565 21.229 -4.618 1.00 20.76 P ATOM 99 OP1 DG A 6 -7.148 21.707 -3.304 1.00 21.57 O ATOM 100 OP2 DG A 6 -8.982 21.499 -4.946 1.00 20.70 O ATOM 101 O5' DG A 6 -6.690 21.910 -5.756 1.00 21.41 O ATOM 102 C5' DG A 6 -7.181 22.003 -7.087 1.00 23.72 C ATOM 103 C4' DG A 6 -6.082 22.490 -8.011 1.00 25.35 C ATOM 104 O4' DG A 6 -4.991 21.562 -7.864 1.00 25.99 O ATOM 105 C3' DG A 6 -6.465 22.443 -9.492 1.00 25.48 C ATOM 106 O3' DG A 6 -6.807 23.724 -10.031 1.00 27.28 O ATOM 107 C2' DG A 6 -5.276 21.807 -10.227 1.00 24.59 C ATOM 108 C1' DG A 6 -4.313 21.430 -9.112 1.00 23.62 C ATOM 109 N9 DG A 6 -3.835 20.064 -9.186 1.00 23.43 N ATOM 110 C8 DG A 6 -2.546 19.690 -9.443 1.00 21.96 C ATOM 111 N7 DG A 6 -2.374 18.400 -9.423 1.00 21.34 N ATOM 112 C5 DG A 6 -3.634 17.877 -9.147 1.00 23.24 C ATOM 113 C6 DG A 6 -4.078 16.530 -8.991 1.00 22.82 C ATOM 114 O6 DG A 6 -3.440 15.474 -9.096 1.00 26.07 O ATOM 115 N1 DG A 6 -5.428 16.448 -8.700 1.00 23.51 N ATOM 116 C2 DG A 6 -6.267 17.532 -8.568 1.00 22.63 C ATOM 117 N2 DG A 6 -7.539 17.282 -8.263 1.00 24.66 N ATOM 118 N3 DG A 6 -5.875 18.787 -8.687 1.00 23.20 N ATOM 119 C4 DG A 6 -4.547 18.894 -8.989 1.00 22.55 C TER 120 DG A 6 ATOM 121 O5' DC B 7 -9.880 8.842 -8.653 1.00 17.04 O ATOM 122 C5' DC B 7 -10.660 8.994 -7.478 1.00 16.21 C ATOM 123 C4' DC B 7 -11.002 10.452 -7.402 1.00 18.17 C ATOM 124 O4' DC B 7 -9.812 11.136 -6.960 1.00 19.10 O ATOM 125 C3' DC B 7 -11.403 11.123 -8.728 1.00 18.48 C ATOM 126 O3' DC B 7 -12.347 12.112 -8.374 1.00 19.14 O ATOM 127 C2' DC B 7 -10.098 11.750 -9.257 1.00 18.94 C ATOM 128 C1' DC B 7 -9.419 12.107 -7.923 1.00 18.14 C ATOM 129 N1 DC B 7 -7.917 12.257 -7.964 1.00 18.46 N ATOM 130 C2 DC B 7 -7.350 13.534 -8.003 1.00 15.64 C ATOM 131 O2 DC B 7 -8.063 14.540 -8.013 1.00 18.83 O ATOM 132 N3 DC B 7 -6.006 13.649 -8.041 1.00 18.12 N ATOM 133 C4 DC B 7 -5.224 12.576 -8.057 1.00 13.77 C ATOM 134 N4 DC B 7 -3.914 12.778 -8.095 1.00 15.68 N ATOM 135 C5 DC B 7 -5.781 11.272 -7.997 1.00 16.42 C ATOM 136 C6 DC B 7 -7.110 11.154 -7.939 1.00 15.74 C ATOM 137 P DG B 8 -13.910 11.815 -8.234 1.00 23.84 P ATOM 138 OP1 DG B 8 -14.471 11.009 -9.345 1.00 23.74 O ATOM 139 OP2 DG B 8 -14.507 13.105 -7.850 1.00 25.55 O ATOM 140 O5' DG B 8 -13.907 10.901 -6.938 1.00 23.91 O ATOM 141 C5' DG B 8 -14.367 11.429 -5.716 1.00 21.70 C ATOM 142 C4' DG B 8 -14.631 10.278 -4.777 1.00 22.44 C ATOM 143 O4' DG B 8 -13.605 9.285 -5.015 1.00 19.26 O ATOM 144 C3' DG B 8 -14.461 10.713 -3.329 1.00 22.63 C ATOM 145 O3' DG B 8 -15.685 10.855 -2.676 1.00 24.97 O ATOM 146 C2' DG B 8 -13.783 9.543 -2.646 1.00 22.82 C ATOM 147 C1' DG B 8 -13.139 8.785 -3.780 1.00 19.01 C ATOM 148 N9 DG B 8 -11.700 8.847 -3.814 1.00 19.89 N ATOM 149 C8 DG B 8 -10.921 7.733 -3.744 1.00 16.17 C ATOM 150 N7 DG B 8 -9.665 8.008 -3.832 1.00 19.47 N ATOM 151 C5 DG B 8 -9.588 9.392 -3.971 1.00 20.10 C ATOM 152 C6 DG B 8 -8.455 10.246 -4.110 1.00 19.56 C ATOM 153 O6 DG B 8 -7.260 9.917 -4.139 1.00 21.03 O ATOM 154 N1 DG B 8 -8.817 11.595 -4.238 1.00 18.60 N ATOM 155 C2 DG B 8 -10.123 12.059 -4.219 1.00 16.24 C ATOM 156 N2 DG B 8 -10.342 13.385 -4.359 1.00 10.71 N ATOM 157 N3 DG B 8 -11.174 11.257 -4.092 1.00 18.90 N ATOM 158 C4 DG B 8 -10.852 9.938 -3.962 1.00 19.17 C ATOM 159 P DC B 9 -15.666 11.062 -1.040 0.50 25.26 P ATOM 160 OP1 DC B 9 -14.661 10.279 -0.237 0.50 26.11 O ATOM 161 OP2 DC B 9 -17.087 10.922 -0.623 0.50 26.86 O ATOM 162 O5' DC B 9 -15.100 12.595 -1.199 1.00 25.37 O ATOM 163 C5' DC B 9 -15.404 13.823 -0.418 1.00 22.14 C ATOM 164 C4' DC B 9 -14.266 14.850 -0.219 1.00 20.35 C ATOM 165 O4' DC B 9 -13.099 14.247 0.391 1.00 18.94 O ATOM 166 C3' DC B 9 -13.740 15.652 -1.445 1.00 20.51 C ATOM 167 O3' DC B 9 -13.329 17.028 -1.148 1.00 21.03 O ATOM 168 C2' DC B 9 -12.494 14.876 -1.827 1.00 20.31 C ATOM 169 C1' DC B 9 -11.970 14.457 -0.457 1.00 21.63 C ATOM 170 N1 DC B 9 -11.137 13.217 -0.543 1.00 18.28 N ATOM 171 C2 DC B 9 -9.737 13.281 -0.615 1.00 19.83 C ATOM 172 O2 DC B 9 -9.179 14.374 -0.593 1.00 19.29 O ATOM 173 N3 DC B 9 -9.044 12.114 -0.694 1.00 18.65 N ATOM 174 C4 DC B 9 -9.713 10.948 -0.735 1.00 21.51 C ATOM 175 N4 DC B 9 -9.033 9.810 -0.802 1.00 23.54 N ATOM 176 C5 DC B 9 -11.127 10.857 -0.638 1.00 19.89 C ATOM 177 C6 DC B 9 -11.779 12.019 -0.560 1.00 20.16 C ATOM 178 P DG B 10 -14.416 18.207 -0.938 1.00 24.06 P ATOM 179 OP1 DG B 10 -15.400 18.229 -2.046 1.00 19.37 O ATOM 180 OP2 DG B 10 -13.684 19.433 -0.558 1.00 21.39 O ATOM 181 O5' DG B 10 -15.212 17.675 0.350 1.00 23.66 O ATOM 182 C5' DG B 10 -15.299 18.407 1.568 1.00 22.50 C ATOM 183 C4' DG B 10 -16.275 17.776 2.557 1.00 20.28 C ATOM 184 O4' DG B 10 -16.537 16.365 2.307 1.00 22.06 O ATOM 185 C3' DG B 10 -15.781 17.841 3.985 1.00 18.38 C ATOM 186 O3' DG B 10 -16.145 19.130 4.475 1.00 17.79 O ATOM 187 C2' DG B 10 -16.501 16.683 4.683 1.00 18.35 C ATOM 188 C1' DG B 10 -16.774 15.698 3.553 1.00 17.77 C ATOM 189 N9 DG B 10 -15.969 14.490 3.471 1.00 17.90 N ATOM 190 C8 DG B 10 -16.484 13.219 3.447 1.00 16.69 C ATOM 191 N7 DG B 10 -15.580 12.299 3.328 1.00 17.99 N ATOM 192 C5 DG B 10 -14.381 13.003 3.269 1.00 17.18 C ATOM 193 C6 DG B 10 -13.044 12.516 3.159 1.00 18.91 C ATOM 194 O6 DG B 10 -12.681 11.325 3.046 1.00 18.17 O ATOM 195 N1 DG B 10 -12.102 13.562 3.144 1.00 18.19 N ATOM 196 C2 DG B 10 -12.399 14.898 3.219 1.00 16.00 C ATOM 197 N2 DG B 10 -11.383 15.765 3.186 1.00 15.52 N ATOM 198 N3 DG B 10 -13.635 15.354 3.333 1.00 17.16 N ATOM 199 C4 DG B 10 -14.586 14.362 3.365 1.00 17.92 C ATOM 200 P DT B 11 -15.066 20.227 4.942 1.00 21.93 P ATOM 201 OP1 DT B 11 -15.814 21.303 5.594 1.00 19.65 O ATOM 202 OP2 DT B 11 -14.152 20.558 3.831 1.00 19.32 O ATOM 203 O5' DT B 11 -14.287 19.469 6.125 1.00 20.39 O ATOM 204 C5' DT B 11 -13.534 20.199 7.130 1.00 19.91 C ATOM 205 C4' DT B 11 -12.135 19.619 7.271 1.00 19.65 C ATOM 206 O4' DT B 11 -12.205 18.270 7.753 1.00 15.86 O ATOM 207 C3' DT B 11 -11.295 19.584 6.000 1.00 19.98 C ATOM 208 O3' DT B 11 -9.971 20.064 6.333 1.00 20.51 O ATOM 209 C2' DT B 11 -11.361 18.118 5.565 1.00 18.10 C ATOM 210 C1' DT B 11 -11.513 17.395 6.904 1.00 17.71 C ATOM 211 N1 DT B 11 -12.210 16.029 6.892 1.00 18.15 N ATOM 212 C2 DT B 11 -11.396 14.917 6.781 1.00 18.63 C ATOM 213 O2 DT B 11 -10.186 14.987 6.685 1.00 18.63 O ATOM 214 N3 DT B 11 -12.033 13.695 6.783 1.00 20.87 N ATOM 215 C4 DT B 11 -13.400 13.468 6.885 1.00 20.38 C ATOM 216 O4 DT B 11 -13.878 12.335 6.890 1.00 23.07 O ATOM 217 C5 DT B 11 -14.215 14.663 7.019 1.00 20.64 C ATOM 218 C7 DT B 11 -15.706 14.494 7.145 1.00 23.94 C ATOM 219 C6 DT B 11 -13.600 15.864 7.020 1.00 17.35 C ATOM 220 P DG B 12 -9.588 21.631 6.334 1.00 24.90 P ATOM 221 OP1 DG B 12 -10.223 22.415 5.257 1.00 23.02 O ATOM 222 OP2 DG B 12 -8.123 21.641 6.550 1.00 25.01 O ATOM 223 O5' DG B 12 -10.267 22.177 7.646 1.00 20.59 O ATOM 224 C5' DG B 12 -9.891 21.647 8.866 1.00 15.23 C ATOM 225 C4' DG B 12 -10.306 22.657 9.904 1.00 18.21 C ATOM 226 O4' DG B 12 -11.757 22.685 9.902 1.00 19.02 O ATOM 227 C3' DG B 12 -9.858 22.270 11.301 1.00 17.82 C ATOM 228 O3' DG B 12 -9.134 23.365 11.907 1.00 21.52 O ATOM 229 C2' DG B 12 -11.130 22.008 12.078 1.00 17.13 C ATOM 230 C1' DG B 12 -12.294 22.228 11.131 1.00 14.74 C ATOM 231 N9 DG B 12 -13.073 21.002 10.997 1.00 14.89 N ATOM 232 C8 DG B 12 -14.444 20.876 11.029 1.00 12.50 C ATOM 233 N7 DG B 12 -14.855 19.649 10.873 1.00 14.02 N ATOM 234 C5 DG B 12 -13.696 18.905 10.738 1.00 14.83 C ATOM 235 C6 DG B 12 -13.525 17.519 10.539 1.00 15.52 C ATOM 236 O6 DG B 12 -14.439 16.683 10.460 1.00 15.92 O ATOM 237 N1 DG B 12 -12.153 17.149 10.455 1.00 17.80 N ATOM 238 C2 DG B 12 -11.091 18.038 10.525 1.00 16.79 C ATOM 239 N2 DG B 12 -9.808 17.603 10.409 1.00 8.80 N ATOM 240 N3 DG B 12 -11.285 19.342 10.685 1.00 15.22 N ATOM 241 C4 DG B 12 -12.591 19.713 10.794 1.00 14.25 C TER 242 DG B 12 ATOM 243 P DT C 13 -6.843 -4.419 -0.672 0.83 20.87 P ATOM 244 OP1 DT C 13 -7.865 -3.520 -1.319 0.83 21.01 O ATOM 245 OP2 DT C 13 -7.063 -5.854 -0.537 0.83 23.35 O ATOM 246 O5' DT C 13 -5.419 -3.988 -0.923 1.00 13.95 O ATOM 247 C5' DT C 13 -4.630 -4.972 -1.589 1.00 15.07 C ATOM 248 C4' DT C 13 -3.248 -4.470 -1.889 1.00 15.41 C ATOM 249 O4' DT C 13 -3.451 -3.121 -2.356 1.00 14.08 O ATOM 250 C3' DT C 13 -2.315 -4.453 -0.695 1.00 18.53 C ATOM 251 O3' DT C 13 -0.962 -4.895 -1.048 1.00 19.18 O ATOM 252 C2' DT C 13 -2.345 -2.985 -0.310 1.00 18.73 C ATOM 253 C1' DT C 13 -2.504 -2.318 -1.684 1.00 16.47 C ATOM 254 N1 DT C 13 -3.031 -0.947 -1.587 1.00 16.11 N ATOM 255 C2 DT C 13 -2.170 0.083 -1.293 1.00 12.95 C ATOM 256 O2 DT C 13 -0.967 -0.070 -1.112 1.00 15.30 O ATOM 257 N3 DT C 13 -2.742 1.285 -1.219 1.00 12.16 N ATOM 258 C4 DT C 13 -4.069 1.577 -1.387 1.00 14.32 C ATOM 259 O4 DT C 13 -4.451 2.718 -1.277 1.00 19.22 O ATOM 260 C5 DT C 13 -4.937 0.459 -1.713 1.00 15.17 C ATOM 261 C7 DT C 13 -6.415 0.606 -1.933 0.17 15.32 C ATOM 262 C6 DT C 13 -4.379 -0.737 -1.793 1.00 14.43 C ATOM 263 P DG C 14 -0.458 -6.369 -0.720 1.00 22.34 P ATOM 264 OP1 DG C 14 -1.200 -6.868 0.457 1.00 19.00 O ATOM 265 OP2 DG C 14 1.006 -6.412 -0.751 1.00 22.14 O ATOM 266 O5' DG C 14 -1.064 -7.163 -1.979 1.00 19.11 O ATOM 267 C5' DG C 14 -0.909 -6.709 -3.313 1.00 16.48 C ATOM 268 C4' DG C 14 -1.739 -7.540 -4.277 1.00 14.19 C ATOM 269 O4' DG C 14 -3.144 -7.160 -4.225 1.00 13.98 O ATOM 270 C3' DG C 14 -1.296 -7.198 -5.676 1.00 14.33 C ATOM 271 O3' DG C 14 -0.571 -8.257 -6.002 1.00 17.42 O ATOM 272 C2' DG C 14 -2.564 -7.138 -6.515 1.00 13.92 C ATOM 273 C1' DG C 14 -3.692 -6.986 -5.505 1.00 13.42 C ATOM 274 N9 DG C 14 -4.354 -5.655 -5.524 1.00 14.39 N ATOM 275 C8 DG C 14 -5.711 -5.465 -5.630 1.00 14.16 C ATOM 276 N7 DG C 14 -6.084 -4.224 -5.605 1.00 14.25 N ATOM 277 C5 DG C 14 -4.899 -3.531 -5.465 1.00 13.95 C ATOM 278 C6 DG C 14 -4.699 -2.137 -5.383 1.00 14.25 C ATOM 279 O6 DG C 14 -5.555 -1.244 -5.433 1.00 15.85 O ATOM 280 N1 DG C 14 -3.357 -1.812 -5.214 1.00 11.62 N ATOM 281 C2 DG C 14 -2.322 -2.720 -5.166 1.00 13.01 C ATOM 282 N2 DG C 14 -1.096 -2.210 -5.001 0.83 11.88 N ATOM 283 N3 DG C 14 -2.494 -4.036 -5.241 1.00 12.03 N ATOM 284 C4 DG C 14 -3.810 -4.385 -5.412 1.00 11.97 C TER 285 DG C 14 ATOM 286 O5' DT D 15 0.065 6.667 -5.170 1.00 16.88 O ATOM 287 C5' DT D 15 0.954 6.430 -4.030 1.00 12.12 C ATOM 288 C4' DT D 15 1.455 4.996 -3.827 1.00 13.56 C ATOM 289 O4' DT D 15 0.401 4.111 -3.359 1.00 15.63 O ATOM 290 C3' DT D 15 2.055 4.334 -5.070 1.00 12.96 C ATOM 291 O3' DT D 15 3.126 3.511 -4.705 1.00 17.80 O ATOM 292 C2' DT D 15 0.914 3.423 -5.542 1.00 12.43 C ATOM 293 C1' DT D 15 0.299 2.981 -4.203 1.00 10.83 C ATOM 294 N1 DT D 15 -1.143 2.572 -4.352 1.00 11.94 N ATOM 295 C2 DT D 15 -1.483 1.255 -4.588 1.00 2.76 C ATOM 296 O2 DT D 15 -0.640 0.382 -4.692 1.00 13.06 O ATOM 297 N3 DT D 15 -2.832 1.000 -4.700 1.00 12.06 N ATOM 298 C4 DT D 15 -3.847 1.933 -4.630 1.00 8.95 C ATOM 299 O4 DT D 15 -5.038 1.639 -4.745 1.00 13.46 O ATOM 300 C5 DT D 15 -3.419 3.266 -4.365 1.00 11.09 C ATOM 301 C7 DT D 15 -4.441 4.359 -4.238 0.17 9.60 C ATOM 302 C6 DT D 15 -2.103 3.543 -4.224 1.00 7.71 C ATOM 303 P DG D 16 4.644 4.021 -4.765 1.00 18.47 P ATOM 304 OP1 DG D 16 4.869 4.674 -6.061 1.00 19.50 O ATOM 305 OP2 DG D 16 5.454 2.861 -4.337 1.00 21.30 O ATOM 306 O5' DG D 16 4.697 5.032 -3.522 1.00 19.79 O ATOM 307 C5' DG D 16 4.728 4.458 -2.204 1.00 15.19 C ATOM 308 C4' DG D 16 4.766 5.569 -1.189 1.00 16.93 C ATOM 309 O4' DG D 16 3.772 6.557 -1.534 1.00 17.34 O ATOM 310 C3' DG D 16 4.455 5.104 0.225 1.00 15.07 C ATOM 311 O3' DG D 16 5.695 4.994 0.847 1.00 18.97 O ATOM 312 C2' DG D 16 3.647 6.235 0.844 1.00 15.42 C ATOM 313 C1' DG D 16 3.014 6.909 -0.375 1.00 16.61 C ATOM 314 N9 DG D 16 1.583 6.643 -0.574 1.00 14.93 N ATOM 315 C8 DG D 16 0.660 7.626 -0.728 1.00 11.89 C ATOM 316 N7 DG D 16 -0.542 7.202 -0.872 1.00 15.70 N ATOM 317 C5 DG D 16 -0.444 5.834 -0.815 1.00 15.45 C ATOM 318 C6 DG D 16 -1.454 4.836 -0.887 1.00 17.38 C ATOM 319 O6 DG D 16 -2.662 4.986 -1.062 1.00 19.03 O ATOM 320 N1 DG D 16 -0.919 3.555 -0.750 1.00 19.30 N ATOM 321 C2 DG D 16 0.419 3.287 -0.551 1.00 16.39 C ATOM 322 N2 DG D 16 0.781 2.010 -0.445 0.83 17.94 N ATOM 323 N3 DG D 16 1.360 4.222 -0.472 1.00 17.33 N ATOM 324 C4 DG D 16 0.866 5.473 -0.604 1.00 13.49 C TER 325 DG D 16 HETATM 326 MN A MN A 101 -4.236 8.935 -0.708 0.65 24.81 MN HETATM 327 MN B MN A 101 -3.516 7.372 -1.489 0.35 26.77 MN HETATM 328 O HOH A 201 -9.295 18.929 -8.327 1.00 26.71 O HETATM 329 O HOH A 202 -4.602 8.997 -7.078 1.00 18.07 O HETATM 330 O HOH A 203 -5.869 17.685 -0.751 1.00 21.16 O HETATM 331 O HOH A 204 -4.551 17.825 5.750 1.00 17.62 O HETATM 332 O HOH A 205 -5.334 14.254 6.928 1.00 23.31 O HETATM 333 O HOH A 206 -13.450 6.943 9.482 1.00 29.38 O HETATM 334 O HOH A 207 -2.781 20.977 2.674 1.00 31.29 O HETATM 335 O HOH A 208 -8.456 17.089 3.726 1.00 30.45 O HETATM 336 O HOH A 209 -15.935 11.225 10.043 1.00 21.46 O HETATM 337 O HOH A 210 -12.011 8.268 7.077 1.00 11.91 O HETATM 338 O HOH A 211 -0.671 13.924 7.138 1.00 19.55 O HETATM 339 O HOH A 212 -9.245 7.094 2.717 1.00 32.80 O HETATM 340 O HOH A 213 -14.164 15.689 -8.429 0.50 10.84 O HETATM 341 O HOH A 214 -14.931 17.026 -5.750 1.00 25.90 O HETATM 342 O HOH A 215 -11.275 17.085 -8.868 1.00 25.87 O HETATM 343 O HOH B 101 -4.359 21.698 6.129 1.00 20.49 O HETATM 344 O HOH B 102 -6.535 22.261 3.427 1.00 23.35 O HETATM 345 O HOH B 103 -8.870 25.277 3.017 1.00 27.55 O HETATM 346 O HOH B 104 -10.812 8.698 -10.889 1.00 14.87 O HETATM 347 O HOH B 105 -15.269 23.172 3.795 1.00 23.10 O HETATM 348 O HOH B 106 -13.810 8.862 -12.708 1.00 23.93 O HETATM 349 O HOH B 107 -10.351 20.954 2.059 1.00 23.41 O HETATM 350 O HOH B 108 -13.016 23.413 7.666 1.00 17.86 O HETATM 351 O HOH B 109 -10.780 20.807 -1.008 1.00 35.19 O HETATM 352 O HOH C 101 -4.180 -9.366 0.063 1.00 10.66 O HETATM 353 O HOH C 102 -4.586 -8.376 -2.569 1.00 19.86 O HETATM 354 O HOH C 103 -3.144 -7.855 3.406 1.00 27.27 O HETATM 355 O HOH C 104 -7.300 3.072 -1.783 1.00 12.66 O HETATM 356 O HOH C 105 0.655 -2.981 -2.634 1.00 25.57 O HETATM 357 O HOH C 106 0.953 -6.890 1.991 0.50 33.12 O HETATM 358 O HOH D 101 0.911 -1.169 1.465 1.00 14.65 O HETATM 359 O HOH D 102 7.933 4.566 -1.651 1.00 25.89 O HETATM 360 O HOH D 103 8.385 6.469 2.556 1.00 18.40 O HETATM 361 O HOH D 104 3.727 0.631 -1.831 1.00 26.25 O CONECT 73 326 CONECT 319 327 CONECT 326 73 CONECT 327 319 MASTER 330 0 1 0 0 0 1 6 356 4 4 4 END