0.011273 0.000000 0.000000 0.000000 0.011273 0.000000 0.000000 0.000000 0.013813 0.00000 0.00000 0.00000 Zhao, H. Tang, L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 88.705 88.705 72.394 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 423 413 426 10.1016/j.jmb.2012.07.016 22858866 Structural and Functional Studies of the Phage Sf6 Terminase Small Subunit Reveal a DNA-Spooling Device Facilitated by Structural Plasticity. 2012 10.2210/pdb4dyq/pdb pdb_00004dyq 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298.0 1 Rh coated flat mirror CCD 2009-07-02 ADSC QUANTUM 315r side scattering I-beam bent single crystal; asymmetric cut 4.9650 deg. SINGLE WAVELENGTH M x-ray 1 0.97946 1.0 BL7-1 SSRL 0.97946 SYNCHROTRON SSRL BEAMLINE BL7-1 15576.782 Gene 1 protein 2 man polymer 18.015 water 264 nat water no no MATEPKAGRPSDYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEARADSIFEEIFEIAD NAIPDAAEVAKARLRVDTRKWALARMNPRKYGDKVTNELVGKDGGAIQIETSPMSTLFGK MATEPKAGRPSDYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEARADSIFEEIFEIAD NAIPDAAEVAKARLRVDTRKWALARMNPRKYGDKVTNELVGKDGGAIQIETSPMSTLFGK A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Shigella flexneri bacteriophage VI bacteriophage Sf6 sample gp1 10761 Shigella phage Sf6 469008 Escherichia coli Bl21(DE3)pLysS plasmid pET20b 1 2.29 46.18 VAPOR DIFFUSION, HANGING DROP 6.4 1.2M NAH2PO4/0.8M K2HPO4, 0.2M Li2SO4, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Refinement description Data collection Database references Refinement description 1 0 2012-10-17 1 1 2017-11-15 1 2 2023-09-13 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession Crystal structure of the bacteriophage sf6 terminase small subunit Crystal structure of the terminase small subunit gp1 with D19R mutation of the bacterial virus sf6 RCSB Y RCSB 2012-02-29 REL REL HOH water 3HEF PDB ENTRY 3HEF PDB experimental model HOH 1 2 HOH HOH 201 A HOH 2 2 HOH HOH 202 A HOH 4 2 HOH HOH 203 A HOH 8 2 HOH HOH 204 A HOH 9 2 HOH HOH 205 A HOH 11 2 HOH HOH 206 A HOH 12 2 HOH HOH 207 A HOH 13 2 HOH HOH 208 A HOH 14 2 HOH HOH 209 A HOH 17 2 HOH HOH 210 A HOH 18 2 HOH HOH 211 A HOH 19 2 HOH HOH 212 A HOH 20 2 HOH HOH 213 A HOH 23 2 HOH HOH 214 A HOH 27 2 HOH HOH 215 A HOH 30 2 HOH HOH 216 A HOH 31 2 HOH HOH 217 A HOH 34 2 HOH HOH 218 A HOH 40 2 HOH HOH 219 A HOH 42 2 HOH HOH 220 A HOH 44 2 HOH HOH 221 A HOH 47 2 HOH HOH 222 A HOH 48 2 HOH HOH 223 A HOH 51 2 HOH HOH 224 A HOH 52 2 HOH HOH 225 A HOH 53 2 HOH HOH 226 A HOH 55 2 HOH HOH 227 A HOH 56 2 HOH HOH 228 A HOH 57 2 HOH HOH 229 A HOH 58 2 HOH HOH 230 A HOH 61 2 HOH HOH 231 A HOH 62 2 HOH HOH 232 A HOH 64 2 HOH HOH 233 A HOH 65 2 HOH HOH 234 A HOH 66 2 HOH HOH 235 A HOH 71 2 HOH HOH 236 A HOH 75 2 HOH HOH 237 A HOH 79 2 HOH HOH 238 A HOH 81 2 HOH HOH 239 A HOH 85 2 HOH HOH 240 A HOH 87 2 HOH HOH 241 A HOH 91 2 HOH HOH 242 A HOH 92 2 HOH HOH 243 A HOH 93 2 HOH HOH 244 A HOH 96 2 HOH HOH 245 A HOH 104 2 HOH HOH 246 A HOH 105 2 HOH HOH 247 A HOH 109 2 HOH HOH 248 A HOH 110 2 HOH HOH 249 A HOH 117 2 HOH HOH 250 A HOH 119 2 HOH HOH 251 A HOH 120 2 HOH HOH 252 A HOH 121 2 HOH HOH 253 A HOH 122 2 HOH HOH 254 A HOH 124 2 HOH HOH 255 A HOH 125 2 HOH HOH 256 A HOH 128 2 HOH HOH 257 A HOH 132 2 HOH HOH 258 A HOH 133 2 HOH HOH 259 A HOH 134 2 HOH HOH 260 A HOH 137 2 HOH HOH 261 A HOH 138 2 HOH HOH 262 A HOH 139 2 HOH HOH 263 A HOH 140 2 HOH HOH 264 A HOH 141 2 HOH HOH 265 A HOH 142 2 HOH HOH 266 A HOH 146 2 HOH HOH 267 A HOH 147 2 HOH HOH 268 A HOH 153 2 HOH HOH 269 A HOH 157 2 HOH HOH 270 A HOH 159 2 HOH HOH 271 A HOH 163 2 HOH HOH 272 A HOH 165 2 HOH HOH 273 A HOH 174 2 HOH HOH 274 A HOH 175 2 HOH HOH 275 A HOH 179 2 HOH HOH 276 A HOH 182 2 HOH HOH 277 A HOH 183 2 HOH HOH 278 A HOH 187 2 HOH HOH 279 A HOH 191 2 HOH HOH 280 A HOH 195 2 HOH HOH 281 A HOH 196 2 HOH HOH 282 A HOH 200 2 HOH HOH 283 A HOH 201 2 HOH HOH 284 A HOH 203 2 HOH HOH 285 A HOH 206 2 HOH HOH 286 A HOH 207 2 HOH HOH 287 A HOH 210 2 HOH HOH 288 A HOH 214 2 HOH HOH 289 A HOH 216 2 HOH HOH 290 A HOH 221 2 HOH HOH 291 A HOH 222 2 HOH HOH 292 A HOH 224 2 HOH HOH 293 A HOH 225 2 HOH HOH 294 A HOH 229 2 HOH HOH 295 A HOH 231 2 HOH HOH 296 A HOH 232 2 HOH HOH 297 A HOH 234 2 HOH HOH 298 A HOH 236 2 HOH HOH 299 A HOH 237 2 HOH HOH 300 A HOH 239 2 HOH HOH 301 A HOH 240 2 HOH HOH 302 A HOH 242 2 HOH HOH 303 A HOH 244 2 HOH HOH 304 A HOH 245 2 HOH HOH 305 A HOH 246 2 HOH HOH 306 A HOH 248 2 HOH HOH 307 A HOH 251 2 HOH HOH 308 A HOH 252 2 HOH HOH 309 A HOH 255 2 HOH HOH 310 A HOH 256 2 HOH HOH 311 A HOH 259 2 HOH HOH 312 A HOH 260 2 HOH HOH 313 A HOH 262 2 HOH HOH 314 A HOH 263 2 HOH HOH 315 A HOH 264 2 HOH HOH 316 A HOH 3 2 HOH HOH 201 B HOH 5 2 HOH HOH 202 B HOH 6 2 HOH HOH 203 B HOH 7 2 HOH HOH 204 B HOH 10 2 HOH HOH 205 B HOH 15 2 HOH HOH 206 B HOH 16 2 HOH HOH 207 B HOH 21 2 HOH HOH 208 B HOH 22 2 HOH HOH 209 B HOH 24 2 HOH HOH 210 B HOH 25 2 HOH HOH 211 B HOH 26 2 HOH HOH 212 B HOH 28 2 HOH HOH 213 B HOH 29 2 HOH HOH 214 B HOH 32 2 HOH HOH 215 B HOH 33 2 HOH HOH 216 B HOH 35 2 HOH HOH 217 B HOH 36 2 HOH HOH 218 B HOH 37 2 HOH HOH 219 B HOH 38 2 HOH HOH 220 B HOH 39 2 HOH HOH 221 B HOH 41 2 HOH HOH 222 B HOH 43 2 HOH HOH 223 B HOH 45 2 HOH HOH 224 B HOH 46 2 HOH HOH 225 B HOH 49 2 HOH HOH 226 B HOH 50 2 HOH HOH 227 B HOH 54 2 HOH HOH 228 B HOH 59 2 HOH HOH 229 B HOH 60 2 HOH HOH 230 B HOH 63 2 HOH HOH 231 B HOH 67 2 HOH HOH 232 B HOH 68 2 HOH HOH 233 B HOH 69 2 HOH HOH 234 B HOH 70 2 HOH HOH 235 B HOH 72 2 HOH HOH 236 B HOH 73 2 HOH HOH 237 B HOH 74 2 HOH HOH 238 B HOH 76 2 HOH HOH 239 B HOH 77 2 HOH HOH 240 B HOH 78 2 HOH HOH 241 B HOH 80 2 HOH HOH 242 B HOH 82 2 HOH HOH 243 B HOH 83 2 HOH HOH 244 B HOH 84 2 HOH HOH 245 B HOH 86 2 HOH HOH 246 B HOH 88 2 HOH HOH 247 B HOH 89 2 HOH HOH 248 B HOH 90 2 HOH HOH 249 B HOH 94 2 HOH HOH 250 B HOH 95 2 HOH HOH 251 B HOH 97 2 HOH HOH 252 B HOH 98 2 HOH HOH 253 B HOH 99 2 HOH HOH 254 B HOH 100 2 HOH HOH 255 B HOH 101 2 HOH HOH 256 B HOH 102 2 HOH HOH 257 B HOH 103 2 HOH HOH 258 B HOH 106 2 HOH HOH 259 B HOH 107 2 HOH HOH 260 B HOH 108 2 HOH HOH 261 B HOH 111 2 HOH HOH 262 B HOH 112 2 HOH HOH 263 B HOH 113 2 HOH HOH 264 B HOH 114 2 HOH HOH 265 B HOH 115 2 HOH HOH 266 B HOH 116 2 HOH HOH 267 B HOH 118 2 HOH HOH 268 B HOH 123 2 HOH HOH 269 B HOH 126 2 HOH HOH 270 B HOH 127 2 HOH HOH 271 B HOH 129 2 HOH HOH 272 B HOH 130 2 HOH HOH 273 B HOH 131 2 HOH HOH 274 B HOH 135 2 HOH HOH 275 B HOH 136 2 HOH HOH 276 B HOH 143 2 HOH HOH 277 B HOH 144 2 HOH HOH 278 B HOH 145 2 HOH HOH 279 B HOH 148 2 HOH HOH 280 B HOH 149 2 HOH HOH 281 B HOH 150 2 HOH HOH 282 B HOH 151 2 HOH HOH 283 B HOH 152 2 HOH HOH 284 B HOH 154 2 HOH HOH 285 B HOH 155 2 HOH HOH 286 B HOH 156 2 HOH HOH 287 B HOH 158 2 HOH HOH 288 B HOH 160 2 HOH HOH 289 B HOH 161 2 HOH HOH 290 B HOH 162 2 HOH HOH 291 B HOH 164 2 HOH HOH 292 B HOH 166 2 HOH HOH 293 B HOH 167 2 HOH HOH 294 B HOH 168 2 HOH HOH 295 B HOH 169 2 HOH HOH 296 B HOH 170 2 HOH HOH 297 B HOH 171 2 HOH HOH 298 B HOH 172 2 HOH HOH 299 B HOH 173 2 HOH HOH 300 B HOH 176 2 HOH HOH 301 B HOH 177 2 HOH HOH 302 B HOH 178 2 HOH HOH 303 B HOH 180 2 HOH HOH 304 B HOH 181 2 HOH HOH 305 B HOH 184 2 HOH HOH 306 B HOH 185 2 HOH HOH 307 B HOH 186 2 HOH HOH 308 B HOH 188 2 HOH HOH 309 B HOH 189 2 HOH HOH 310 B HOH 190 2 HOH HOH 311 B HOH 192 2 HOH HOH 312 B HOH 193 2 HOH HOH 313 B HOH 194 2 HOH HOH 314 B HOH 197 2 HOH HOH 315 B HOH 198 2 HOH HOH 316 B HOH 199 2 HOH HOH 317 B HOH 202 2 HOH HOH 318 B HOH 204 2 HOH HOH 319 B HOH 205 2 HOH HOH 320 B HOH 208 2 HOH HOH 321 B HOH 209 2 HOH HOH 322 B HOH 211 2 HOH HOH 323 B HOH 212 2 HOH HOH 324 B HOH 213 2 HOH HOH 325 B HOH 215 2 HOH HOH 326 B HOH 217 2 HOH HOH 327 B HOH 218 2 HOH HOH 328 B HOH 219 2 HOH HOH 329 B HOH 220 2 HOH HOH 330 B HOH 223 2 HOH HOH 331 B HOH 226 2 HOH HOH 332 B HOH 227 2 HOH HOH 333 B HOH 228 2 HOH HOH 334 B HOH 230 2 HOH HOH 335 B HOH 233 2 HOH HOH 336 B HOH 235 2 HOH HOH 337 B HOH 238 2 HOH HOH 338 B HOH 241 2 HOH HOH 339 B HOH 243 2 HOH HOH 340 B HOH 247 2 HOH HOH 341 B HOH 249 2 HOH HOH 342 B HOH 250 2 HOH HOH 343 B HOH 253 2 HOH HOH 344 B HOH 254 2 HOH HOH 345 B HOH 257 2 HOH HOH 346 B HOH 258 2 HOH HOH 347 B HOH 261 2 HOH HOH 348 B n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A PRO 10 n 10 PRO 10 A SER 11 n 11 SER 11 A ASP 12 n 12 ASP 12 A TYR 13 n 13 TYR 13 A MET 14 n 14 MET 14 A PRO 15 n 15 PRO 15 A GLU 16 n 16 GLU 16 A VAL 17 n 17 VAL 17 A ALA 18 n 18 ALA 18 A ASP 19 n 19 ASP 19 A ASP 20 n 20 ASP 20 A ILE 21 n 21 ILE 21 A CYS 22 n 22 CYS 22 A SER 23 n 23 SER 23 A LEU 24 n 24 LEU 24 A LEU 25 n 25 LEU 25 A SER 26 n 26 SER 26 A SER 27 n 27 SER 27 A GLY 28 n 28 GLY 28 A GLU 29 n 29 GLU 29 A SER 30 n 30 SER 30 A LEU 31 n 31 LEU 31 A LEU 32 n 32 LEU 32 A LYS 33 n 33 LYS 33 A VAL 34 n 34 VAL 34 A CYS 35 n 35 CYS 35 A LYS 36 n 36 LYS 36 A ARG 37 n 37 ARG 37 A PRO 38 n 38 PRO 38 A GLY 39 n 39 GLY 39 A MET 40 n 40 MET 40 A PRO 41 n 41 PRO 41 A ASP 42 n 42 ASP 42 A LYS 43 n 43 LYS 43 A SER 44 n 44 SER 44 A THR 45 n 45 THR 45 A VAL 46 n 46 VAL 46 A PHE 47 n 47 PHE 47 A ARG 48 n 48 ARG 48 A TRP 49 n 49 TRP 49 A LEU 50 n 50 LEU 50 A ALA 51 n 51 ALA 51 A LYS 52 n 52 LYS 52 A HIS 53 n 53 HIS 53 A GLU 54 n 54 GLU 54 A ASP 55 n 55 ASP 55 A PHE 56 n 56 PHE 56 A ARG 57 n 57 ARG 57 A ASP 58 n 58 ASP 58 A LYS 59 n 59 LYS 59 A TYR 60 n 60 TYR 60 A ALA 61 n 61 ALA 61 A LYS 62 n 62 LYS 62 A ALA 63 n 63 ALA 63 A THR 64 n 64 THR 64 A GLU 65 n 65 GLU 65 A ALA 66 n 66 ALA 66 A ARG 67 n 67 ARG 67 A ALA 68 n 68 ALA 68 A ASP 69 n 69 ASP 69 A SER 70 n 70 SER 70 A ILE 71 n 71 ILE 71 A PHE 72 n 72 PHE 72 A GLU 73 n 73 GLU 73 A GLU 74 n 74 GLU 74 A ILE 75 n 75 ILE 75 A PHE 76 n 76 PHE 76 A GLU 77 n 77 GLU 77 A ILE 78 n 78 ILE 78 A ALA 79 n 79 ALA 79 A ASP 80 n 80 ASP 80 A ASN 81 n 81 ASN 81 A ALA 82 n 82 ALA 82 A ILE 83 n 83 ILE 83 A PRO 84 n 84 PRO 84 A ASP 85 n 85 ASP 85 A ALA 86 n 86 ALA 86 A ALA 87 n 87 ALA 87 A GLU 88 n 88 GLU 88 A VAL 89 n 89 VAL 89 A ALA 90 n 90 ALA 90 A LYS 91 n 91 LYS 91 A ALA 92 n 92 ALA 92 A ARG 93 n 93 ARG 93 A LEU 94 n 94 LEU 94 A ARG 95 n 95 ARG 95 A VAL 96 n 96 VAL 96 A ASP 97 n 97 ASP 97 A THR 98 n 98 THR 98 A ARG 99 n 99 ARG 99 A LYS 100 n 100 LYS 100 A TRP 101 n 101 TRP 101 A ALA 102 n 102 ALA 102 A LEU 103 n 103 LEU 103 A ALA 104 n 104 ALA 104 A ARG 105 n 105 ARG 105 A MET 106 n 106 MET 106 A ASN 107 n 107 ASN 107 A PRO 108 n 108 PRO 108 A ARG 109 n 109 ARG 109 A LYS 110 n 110 LYS 110 A TYR 111 n 111 TYR 111 A GLY 112 n 112 GLY 112 A ASP 113 n 113 ASP 113 A LYS 114 n 114 LYS 114 A VAL 115 n 115 VAL 115 A THR 116 n 116 THR 116 A ASN 117 n 117 ASN 117 A GLU 118 n 118 GLU 118 A LEU 119 n 119 LEU 119 A VAL 120 n 120 VAL 120 A GLY 121 n 121 GLY 121 A LYS 122 n 122 LYS 122 A ASP 123 n 123 ASP 123 A GLY 124 n 124 GLY 124 A GLY 125 n 125 GLY 125 A ALA 126 n 126 ALA 126 A ILE 127 n 127 ILE 127 A GLN 128 n 128 GLN 128 A ILE 129 n 129 ILE 129 A GLU 130 n 130 GLU 130 A THR 131 n 131 THR 131 A SER 132 n 132 SER 132 A n 133 133 A n 134 134 A n 135 135 A n 136 136 A n 137 137 A n 138 138 A n 139 139 A n 140 140 A n 1 1 B n 2 2 B n 3 3 B n 4 4 B n 5 5 B n 6 6 B n 7 7 B n 8 8 B n 9 9 B PRO 10 n 10 PRO 10 B SER 11 n 11 SER 11 B ASP 12 n 12 ASP 12 B TYR 13 n 13 TYR 13 B MET 14 n 14 MET 14 B PRO 15 n 15 PRO 15 B GLU 16 n 16 GLU 16 B VAL 17 n 17 VAL 17 B ALA 18 n 18 ALA 18 B ASP 19 n 19 ASP 19 B ASP 20 n 20 ASP 20 B ILE 21 n 21 ILE 21 B CYS 22 n 22 CYS 22 B SER 23 n 23 SER 23 B LEU 24 n 24 LEU 24 B LEU 25 n 25 LEU 25 B SER 26 n 26 SER 26 B SER 27 n 27 SER 27 B GLY 28 n 28 GLY 28 B GLU 29 n 29 GLU 29 B SER 30 n 30 SER 30 B LEU 31 n 31 LEU 31 B LEU 32 n 32 LEU 32 B LYS 33 n 33 LYS 33 B VAL 34 n 34 VAL 34 B CYS 35 n 35 CYS 35 B LYS 36 n 36 LYS 36 B ARG 37 n 37 ARG 37 B PRO 38 n 38 PRO 38 B GLY 39 n 39 GLY 39 B MET 40 n 40 MET 40 B PRO 41 n 41 PRO 41 B ASP 42 n 42 ASP 42 B LYS 43 n 43 LYS 43 B SER 44 n 44 SER 44 B THR 45 n 45 THR 45 B VAL 46 n 46 VAL 46 B PHE 47 n 47 PHE 47 B ARG 48 n 48 ARG 48 B TRP 49 n 49 TRP 49 B LEU 50 n 50 LEU 50 B ALA 51 n 51 ALA 51 B LYS 52 n 52 LYS 52 B HIS 53 n 53 HIS 53 B GLU 54 n 54 GLU 54 B ASP 55 n 55 ASP 55 B PHE 56 n 56 PHE 56 B ARG 57 n 57 ARG 57 B ASP 58 n 58 ASP 58 B LYS 59 n 59 LYS 59 B TYR 60 n 60 TYR 60 B ALA 61 n 61 ALA 61 B LYS 62 n 62 LYS 62 B ALA 63 n 63 ALA 63 B THR 64 n 64 THR 64 B GLU 65 n 65 GLU 65 B ALA 66 n 66 ALA 66 B ARG 67 n 67 ARG 67 B ALA 68 n 68 ALA 68 B ASP 69 n 69 ASP 69 B SER 70 n 70 SER 70 B ILE 71 n 71 ILE 71 B PHE 72 n 72 PHE 72 B GLU 73 n 73 GLU 73 B GLU 74 n 74 GLU 74 B ILE 75 n 75 ILE 75 B PHE 76 n 76 PHE 76 B GLU 77 n 77 GLU 77 B ILE 78 n 78 ILE 78 B ALA 79 n 79 ALA 79 B ASP 80 n 80 ASP 80 B ASN 81 n 81 ASN 81 B ALA 82 n 82 ALA 82 B ILE 83 n 83 ILE 83 B PRO 84 n 84 PRO 84 B ASP 85 n 85 ASP 85 B ALA 86 n 86 ALA 86 B ALA 87 n 87 ALA 87 B GLU 88 n 88 GLU 88 B VAL 89 n 89 VAL 89 B ALA 90 n 90 ALA 90 B LYS 91 n 91 LYS 91 B ALA 92 n 92 ALA 92 B ARG 93 n 93 ARG 93 B LEU 94 n 94 LEU 94 B ARG 95 n 95 ARG 95 B VAL 96 n 96 VAL 96 B ASP 97 n 97 ASP 97 B THR 98 n 98 THR 98 B ARG 99 n 99 ARG 99 B LYS 100 n 100 LYS 100 B TRP 101 n 101 TRP 101 B ALA 102 n 102 ALA 102 B LEU 103 n 103 LEU 103 B ALA 104 n 104 ALA 104 B ARG 105 n 105 ARG 105 B MET 106 n 106 MET 106 B ASN 107 n 107 ASN 107 B PRO 108 n 108 PRO 108 B ARG 109 n 109 ARG 109 B LYS 110 n 110 LYS 110 B TYR 111 n 111 TYR 111 B GLY 112 n 112 GLY 112 B ASP 113 n 113 ASP 113 B LYS 114 n 114 LYS 114 B VAL 115 n 115 VAL 115 B THR 116 n 116 THR 116 B ASN 117 n 117 ASN 117 B GLU 118 n 118 GLU 118 B LEU 119 n 119 LEU 119 B VAL 120 n 120 VAL 120 B GLY 121 n 121 GLY 121 B LYS 122 n 122 LYS 122 B ASP 123 n 123 ASP 123 B GLY 124 n 124 GLY 124 B GLY 125 n 125 GLY 125 B ALA 126 n 126 ALA 126 B ILE 127 n 127 ILE 127 B GLN 128 n 128 GLN 128 B ILE 129 n 129 ILE 129 B GLU 130 n 130 GLU 130 B THR 131 n 131 THR 131 B SER 132 n 132 SER 132 B PRO 133 n 133 PRO 133 B MET 134 n 134 MET 134 B SER 135 n 135 SER 135 B THR 136 n 136 THR 136 B LEU 137 n 137 LEU 137 B PHE 138 n 138 PHE 138 B GLY 139 n 139 GLY 139 B n 140 140 B 3.3060 0.6600 -1.2547 0.3301 -0.4760 2.7079 0.5648 0.2511 1.3813 -0.0155 0.1597 0.1558 -0.2859 0.2558 -0.5948 0.2970 0.1187 0.0349 0.2443 0.0573 0.7270 refined 36.3354 35.3551 16.8900 X-RAY DIFFRACTION 0.7171 -0.0868 -0.0435 0.9472 0.5072 0.8717 0.0445 -0.0586 0.1085 0.0259 0.0098 -0.0618 -0.0452 -0.0289 -0.0453 0.1616 -0.0093 0.0066 0.1644 -0.0074 0.1837 refined 49.0249 11.8898 17.7052 X-RAY DIFFRACTION 1.8285 -0.1891 -0.2416 0.6923 0.0951 0.9541 0.0633 -0.0270 0.5635 0.1674 0.0158 -0.2943 -0.0397 -0.0308 -0.0565 0.3036 -0.0654 0.0142 0.2430 -0.0019 0.3957 refined 64.0462 30.4447 19.3956 X-RAY DIFFRACTION 0.5242 0.0964 -0.0365 1.0839 0.3802 0.4824 -0.0148 -0.0086 0.0473 -0.0761 0.0486 -0.0773 -0.1262 0.0343 -0.0233 0.1632 0.0041 -0.0071 0.1562 -0.0066 0.1830 refined 53.4950 5.0335 15.1209 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain A and resseq 10:63 X-RAY DIFFRACTION 2 chain A and resseq 64:132 X-RAY DIFFRACTION 3 chain B and resseq 10:63 X-RAY DIFFRACTION 4 chain B and resseq 64:139 author_and_software_defined_assembly PISA 8 octameric 32170 -144 43840 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_655 -x+1,-y,z crystal symmetry operation 88.7050000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_545 -y+1/2,x-1/2,z crystal symmetry operation 44.3525000000 -44.3525000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4_555 y+1/2,-x+1/2,z crystal symmetry operation 44.3525000000 44.3525000000 0.0000000000 A N GLU 118 A N GLU 118 B O VAL 115 B O VAL 115 A N GLU 130 A N GLU 130 B O ILE 127 B O ILE 127 1 A MET 1 A MET 1 1 Y 1 A ALA 2 A ALA 2 1 Y 1 A THR 3 A THR 3 1 Y 1 A GLU 4 A GLU 4 1 Y 1 A PRO 5 A PRO 5 1 Y 1 A LYS 6 A LYS 6 1 Y 1 A ALA 7 A ALA 7 1 Y 1 A GLY 8 A GLY 8 1 Y 1 A ARG 9 A ARG 9 1 Y 1 A PRO 133 A PRO 133 1 Y 1 A MET 134 A MET 134 1 Y 1 A SER 135 A SER 135 1 Y 1 A THR 136 A THR 136 1 Y 1 A LEU 137 A LEU 137 1 Y 1 A PHE 138 A PHE 138 1 Y 1 A GLY 139 A GLY 139 1 Y 1 A LYS 140 A LYS 140 1 Y 1 B MET 1 B MET 1 1 Y 1 B ALA 2 B ALA 2 1 Y 1 B THR 3 B THR 3 1 Y 1 B GLU 4 B GLU 4 1 Y 1 B PRO 5 B PRO 5 1 Y 1 B LYS 6 B LYS 6 1 Y 1 B ALA 7 B ALA 7 1 Y 1 B GLY 8 B GLY 8 1 Y 1 B ARG 9 B ARG 9 1 Y 1 B LYS 140 B LYS 140 1 Y 1 A A O O HOH HOH 298 299 1.87 1 B B O O HOH HOH 327 334 1.88 1 B B O O HOH HOH 296 317 1.94 1 B B O O HOH HOH 251 294 2.10 1 B B O O HOH HOH 265 270 2.12 1 A A NH1 O ARG HOH 67 295 2.16 A 1 B B O O HOH HOH 341 346 2.16 1 B B O O HOH HOH 263 317 2.17 1 B B O O HOH HOH 239 281 2.19 1 A B O O HOH HOH 275 302 1.69 1_555 3_545 1 A GLU 16 161.47 -42.74 19.318 -2.9380 -0.0000 0.0000 -2.9380 0.0000 5.8760 0.2020 0.1769 0.1780 1.502 19.125 1925 46607 43953 4.38 94.41 0.14 Random 1 anisotropic THROUGHOUT 0.00 MOLECULAR REPLACEMENT 18.89 0.41 0.60 PDB ENTRY 3HEF ML FLAT BULK SOLVENT MODEL 72.241 0.500 1.502 19.125 264 2243 0 0 1979 0.005 2029 0.891 2735 12.692 780 0.051 297 0.005 358 0.2523 0.2465 1.5398 117 2626 84.00 0.2509 0.2424 1.5814 132 2809 90.00 0.2323 0.2193 1.6279 130 2876 92.00 0.2204 0.2003 1.6805 136 2970 94.00 0.1995 0.1900 1.7405 137 2973 95.00 0.2160 0.1841 1.8101 136 2999 95.00 0.2224 0.1759 1.8924 140 3029 97.00 0.1948 0.1746 1.9921 138 3063 97.00 0.1807 0.1661 2.1168 144 3095 98.00 0.1885 0.1605 2.2800 143 3124 98.00 0.1648 0.1516 2.5089 142 3108 98.00 0.1948 0.1742 2.8709 143 3125 97.00 0.2051 0.1662 3.6131 145 3135 96.00 0.2141 0.1867 19.1266 142 3096 90.00 19.318 1.50 50.0 4DYQ 46607 45628 0 -3.0 0.044 1 50.183 6.7 97.9 0.503 1.50 1.55 2.8 4462 0.503 1 6.4 97.6 data collection Blu-Ice model building PHENIX refinement PHENIX (phenix.refine: 1.6.2_432) data reduction DENZO data scaling SCALEPACK phasing PHENIX High resolution crystal structure of terminase small subunit gp1 of the bacterial virus sf6 1 N N 1 N N 2 N N 2 N N A GLU 16 A GLU 16 HELX_P A SER 27 A SER 27 1 1 12 A SER 30 A SER 30 HELX_P A LYS 36 A LYS 36 1 2 7 A ASP 42 A ASP 42 HELX_P A HIS 53 A HIS 53 1 3 12 A HIS 53 A HIS 53 HELX_P A ASN 81 A ASN 81 1 4 29 A ASP 85 A ASP 85 HELX_P A ASN 107 A ASN 107 1 5 23 A ASN 107 A ASN 107 HELX_P A GLY 112 A GLY 112 1 6 6 A GLY 121 A GLY 121 HELX_P A GLY 125 A GLY 125 5 7 5 B MET 14 B MET 14 HELX_P B SER 27 B SER 27 1 8 14 B SER 30 B SER 30 HELX_P B CYS 35 B CYS 35 1 9 6 B ASP 42 B ASP 42 HELX_P B HIS 53 B HIS 53 1 10 12 B HIS 53 B HIS 53 HELX_P B ASN 81 B ASN 81 1 11 29 B ASP 85 B ASP 85 HELX_P B ASN 107 B ASN 107 1 12 23 B ASN 107 B ASN 107 HELX_P B GLY 112 B GLY 112 1 13 6 B GLY 121 B GLY 121 HELX_P B GLY 125 B GLY 125 5 14 5 VIRAL PROTEIN gp1, octamer, DNA-binding, VIRAL PROTEIN Q716H4_BPSFV UNP 1 1 Q716H4 MATEPKAGRPSDYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEARADSIFEEIFEIAD NAIPDAAEVAKARLRVDTRKWALARMNPRKYGDKVTNELVGKDGGAIQIETSPMSTLFGK 1 140 4DYQ 1 140 Q716H4 A 1 1 140 1 140 4DYQ 1 140 Q716H4 B 1 1 140 2 2 parallel parallel A VAL 115 A VAL 115 A VAL 120 A VAL 120 B ASP 113 B ASP 113 B GLU 118 B GLU 118 A ILE 129 A ILE 129 A THR 131 A THR 131 B ILE 127 B ILE 127 B ILE 129 B ILE 129 90 P 4 21 2