0.016190
0.000000
0.000000
0.000000
0.016190
0.000000
0.000000
0.000000
0.008171
0.00000
0.00000
0.00000
Tan, K.
Chhor, G.
Bearden, J.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
61.766
61.766
122.379
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
The crystal structure of protein-(glutamine-N5) methyltransferase (release factor-specific) from Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirror
CCD
2012-02-16
ADSC QUANTUM 315
Si 111 crystal
MAD
M
x-ray
1
0.97931
1.0
0.97948
1.0
19-ID
APS
0.97931, 0.97948
SYNCHROTRON
APS BEAMLINE 19-ID
23795.627
Protein-(Glutamine-N5) methyltransferase, release factor-specific
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
59.044
ACETATE ION
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
5
nat
water
no
yes
FEVGPDCLIPRPDTEVLVEEAIRFLKR(MSE)PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLS(MSE)DALAVARR
NAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRR(MSE)AA
LPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTREPGSPPESENL
FEVGPDCLIPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAV
VDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAG
VFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTREPGSPPESENL
A
MCSG-APC100341
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
subsp. acidocaldarius DSM 446
sample
Aaci_2779
521098
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
469008
Escherichia coli
BL21 (DE3) magic
plasmid
pMCSG7
1
2.45
49.85
VAPOR DIFFUSION, SITTING DROP
7.5
0.2M calcium acetate hydrate, pH 7.5, 20% (w/v) PEG 3350, 0.0125mg/ml Trypsin, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
289
Midwest Center for Structural Genomics
MCSG
PSI:Biology
repository
Initial release
1
0
2012-03-14
Y
RCSB
Y
RCSB
2012-03-01
REL
REL
CA
CALCIUM ION
ACT
ACETATE ION
GOL
GLYCEROL
HOH
water
THE AUTHORS STATE THAT THE EXPRESSED PROTEIN WAS A FULL LENGTH
PROTEIN WITH SEQUENCE: SNA(MSE)SEAKYFVARLLKAIAEQLPQSPAYRALPLDE
RKRLAEREAEQIVAHALGWDRVKLLQSLGDEVPDEIAERAARLAALRVQGEPLAYVLGKQDF
YGRTFEVGPDCLIPRPDTEVLVEEAIRFLKR(MSE)PSGTRVIDVGTGSGCIAVSIALACPG
VSVTAVDLS(MSE)DALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSNPPYI
PTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRR(MSE)AALPPYVLARGRAGVFLEVGHNQA
DEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTREPGSPPESENL AND SINCE TRYPSIN WAS ADDED IN PROTEIN FOR CRYSTALLIZATION PURPOSES, THE PROTEIN WAS CHOPPED AT MULTIPLE SITES. ESPECIALLY, AN EXPECTED N-TERMINAL DOMAIN WAS COMPLETELY GONE AND SEVERAL LOOPS ARE MISSING IN THE STRUCTURE. HOWEVER, THE AUTHORS DO NOT KNOW EXACTLY WHERE THE SEQUENCE STARTS.
CA
1
2
CA
CA
401
A
ACT
1
3
ACT
ACT
402
A
GOL
1
4
GOL
GOL
403
A
HOH
1
5
HOH
HOH
501
A
HOH
2
5
HOH
HOH
502
A
HOH
3
5
HOH
HOH
503
A
HOH
4
5
HOH
HOH
504
A
HOH
5
5
HOH
HOH
505
A
PHE
99
n
1
PHE
99
A
GLU
100
n
2
GLU
100
A
VAL
101
n
3
VAL
101
A
GLY
102
n
4
GLY
102
A
PRO
103
n
5
PRO
103
A
ASP
104
n
6
ASP
104
A
CYS
105
n
7
CYS
105
A
LEU
106
n
8
LEU
106
A
ILE
107
n
9
ILE
107
A
PRO
108
n
10
PRO
108
A
ARG
109
n
11
ARG
109
A
PRO
110
n
12
PRO
110
A
ASP
111
n
13
ASP
111
A
THR
112
n
14
THR
112
A
GLU
113
n
15
GLU
113
A
VAL
114
n
16
VAL
114
A
LEU
115
n
17
LEU
115
A
VAL
116
n
18
VAL
116
A
GLU
117
n
19
GLU
117
A
GLU
118
n
20
GLU
118
A
ALA
119
n
21
ALA
119
A
ILE
120
n
22
ILE
120
A
ARG
121
n
23
ARG
121
A
PHE
122
n
24
PHE
122
A
LEU
123
n
25
LEU
123
A
LYS
124
n
26
LYS
124
A
ARG
125
n
27
ARG
125
A
MSE
126
n
28
MSE
126
A
PRO
127
n
29
PRO
127
A
SER
128
n
30
SER
128
A
GLY
129
n
31
GLY
129
A
THR
130
n
32
THR
130
A
ARG
131
n
33
ARG
131
A
VAL
132
n
34
VAL
132
A
ILE
133
n
35
ILE
133
A
ASP
134
n
36
ASP
134
A
VAL
135
n
37
VAL
135
A
GLY
136
n
38
GLY
136
A
THR
137
n
39
THR
137
A
GLY
138
n
40
GLY
138
A
SER
139
n
41
SER
139
A
GLY
140
n
42
GLY
140
A
CYS
141
n
43
CYS
141
A
ILE
142
n
44
ILE
142
A
ALA
143
n
45
ALA
143
A
VAL
144
n
46
VAL
144
A
SER
145
n
47
SER
145
A
ILE
146
n
48
ILE
146
A
ALA
147
n
49
ALA
147
A
LEU
148
n
50
LEU
148
A
ALA
149
n
51
ALA
149
A
CYS
150
n
52
CYS
150
A
PRO
151
n
53
PRO
151
A
GLY
152
n
54
GLY
152
A
VAL
153
n
55
VAL
153
A
SER
154
n
56
SER
154
A
VAL
155
n
57
VAL
155
A
THR
156
n
58
THR
156
A
ALA
157
n
59
ALA
157
A
VAL
158
n
60
VAL
158
A
ASP
159
n
61
ASP
159
A
LEU
160
n
62
LEU
160
A
SER
161
n
63
SER
161
A
n
64
162
A
n
65
163
A
n
66
164
A
n
67
165
A
n
68
166
A
n
69
167
A
n
70
168
A
n
71
169
A
n
72
170
A
n
73
171
A
n
74
172
A
n
75
173
A
n
76
174
A
n
77
175
A
n
78
176
A
n
79
177
A
n
80
178
A
n
81
179
A
n
82
180
A
TRP
181
n
83
TRP
181
A
ALA
182
n
84
ALA
182
A
ALA
183
n
85
ALA
183
A
ALA
184
n
86
ALA
184
A
ASP
185
n
87
ASP
185
A
GLY
186
n
88
GLY
186
A
ILE
187
n
89
ILE
187
A
GLU
188
n
90
GLU
188
A
TRP
189
n
91
TRP
189
A
LEU
190
n
92
LEU
190
A
ILE
191
n
93
ILE
191
A
GLU
192
n
94
GLU
192
A
ARG
193
n
95
ARG
193
A
ALA
194
n
96
ALA
194
A
GLU
195
n
97
GLU
195
A
ARG
196
n
98
ARG
196
A
GLY
197
n
99
GLY
197
A
ARG
198
n
100
ARG
198
A
PRO
199
n
101
PRO
199
A
TRP
200
n
102
TRP
200
A
HIS
201
n
103
HIS
201
A
ALA
202
n
104
ALA
202
A
ILE
203
n
105
ILE
203
A
VAL
204
n
106
VAL
204
A
SER
205
n
107
SER
205
A
ASN
206
n
108
ASN
206
A
PRO
207
n
109
PRO
207
A
PRO
208
n
110
PRO
208
A
TYR
209
n
111
TYR
209
A
ILE
210
n
112
ILE
210
A
PRO
211
n
113
PRO
211
A
n
114
212
A
n
115
213
A
n
116
214
A
n
117
215
A
n
118
216
A
n
119
217
A
n
120
218
A
n
121
219
A
n
122
220
A
n
123
221
A
n
124
222
A
n
125
223
A
n
126
224
A
n
127
225
A
n
128
226
A
n
129
227
A
n
130
228
A
n
131
229
A
n
132
230
A
n
133
231
A
n
134
232
A
n
135
233
A
n
136
234
A
n
137
235
A
ASP
236
n
138
ASP
236
A
GLY
237
n
139
GLY
237
A
LEU
238
n
140
LEU
238
A
GLN
239
n
141
GLN
239
A
PHE
240
n
142
PHE
240
A
TYR
241
n
143
TYR
241
A
ARG
242
n
144
ARG
242
A
ARG
243
n
145
ARG
243
A
MSE
244
n
146
MSE
244
A
ALA
245
n
147
ALA
245
A
ALA
246
n
148
ALA
246
A
LEU
247
n
149
LEU
247
A
PRO
248
n
150
PRO
248
A
PRO
249
n
151
PRO
249
A
TYR
250
n
152
TYR
250
A
VAL
251
n
153
VAL
251
A
LEU
252
n
154
LEU
252
A
ALA
253
n
155
ALA
253
A
ALA
254
n
156
ARG
254
A
GLY
255
n
157
GLY
255
A
ARG
256
n
158
ARG
256
A
ALA
257
n
159
ALA
257
A
GLY
258
n
160
GLY
258
A
VAL
259
n
161
VAL
259
A
PHE
260
n
162
PHE
260
A
LEU
261
n
163
LEU
261
A
GLU
262
n
164
GLU
262
A
VAL
263
n
165
VAL
263
A
GLY
264
n
166
GLY
264
A
HIS
265
n
167
HIS
265
A
ASN
266
n
168
ASN
266
A
ALA
267
n
169
GLN
267
A
ALA
268
n
170
ALA
268
A
ASP
269
n
171
ASP
269
A
GLU
270
n
172
GLU
270
A
VAL
271
n
173
VAL
271
A
ALA
272
n
174
ALA
272
A
ARG
273
n
175
ARG
273
A
LEU
274
n
176
LEU
274
A
PHE
275
n
177
PHE
275
A
ALA
276
n
178
ALA
276
A
PRO
277
n
179
PRO
277
A
TRP
278
n
180
TRP
278
A
ARG
279
n
181
ARG
279
A
GLU
280
n
182
GLU
280
A
ARG
281
n
183
ARG
281
A
GLY
282
n
184
GLY
282
A
PHE
283
n
185
PHE
283
A
ALA
284
n
186
ARG
284
A
VAL
285
n
187
VAL
285
A
ARG
286
n
188
ARG
286
A
LYS
287
n
189
LYS
287
A
VAL
288
n
190
VAL
288
A
LYS
289
n
191
LYS
289
A
ASP
290
n
192
ASP
290
A
LEU
291
n
193
LEU
291
A
ARG
292
n
194
ARG
292
A
GLY
293
n
195
GLY
293
A
ILE
294
n
196
ILE
294
A
ASP
295
n
197
ASP
295
A
ARG
296
n
198
ARG
296
A
VAL
297
n
199
VAL
297
A
ILE
298
n
200
ILE
298
A
ALA
299
n
201
ALA
299
A
VAL
300
n
202
VAL
300
A
THR
301
n
203
THR
301
A
ARG
302
n
204
ARG
302
A
GLU
303
n
205
GLU
303
A
PRO
304
n
206
PRO
304
A
n
207
305
A
n
208
306
A
n
209
307
A
n
210
308
A
n
211
309
A
n
212
310
A
n
213
311
A
n
214
312
A
n
215
313
A
2.8335
0.7852
-0.3953
5.3863
1.0661
10.6789
0.0771
-0.3980
0.1045
0.7514
0.0235
-0.0055
0.1368
-1.0472
-0.0771
0.5504
0.1326
-0.0581
0.4244
0.0217
0.2727
refined
7.2410
14.5400
15.4956
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
2800
-37
15630
A
HOH
503
E
O
HOH
1_555
A
CA
401
B
CA
CA
1_555
A
ASN
206
A
OD1
ASN
108
1_555
75.9
A
HOH
503
E
O
HOH
1_555
A
CA
401
B
CA
CA
1_555
A
GLU
262
A
OE1
GLU
164
1_555
163.9
A
ASN
206
A
OD1
ASN
108
1_555
A
CA
401
B
CA
CA
1_555
A
GLU
262
A
OE1
GLU
164
1_555
88.4
A
HOH
503
E
O
HOH
1_555
A
CA
401
B
CA
CA
1_555
A
ASP
111
A
OD1
ASP
13
1_555
71.0
A
ASN
206
A
OD1
ASN
108
1_555
A
CA
401
B
CA
CA
1_555
A
ASP
111
A
OD1
ASP
13
1_555
68.4
A
GLU
262
A
OE1
GLU
164
1_555
A
CA
401
B
CA
CA
1_555
A
ASP
111
A
OD1
ASP
13
1_555
106.9
A
HOH
503
E
O
HOH
1_555
A
CA
401
B
CA
CA
1_555
A
ASP
111
A
OD2
ASP
13
1_555
111.8
A
ASN
206
A
OD1
ASN
108
1_555
A
CA
401
B
CA
CA
1_555
A
ASP
111
A
OD2
ASP
13
1_555
90.2
A
GLU
262
A
OE1
GLU
164
1_555
A
CA
401
B
CA
CA
1_555
A
ASP
111
A
OD2
ASP
13
1_555
71.3
A
ASP
111
A
OD1
ASP
13
1_555
A
CA
401
B
CA
CA
1_555
A
ASP
111
A
OD2
ASP
13
1_555
42.6
A
MSE
126
SELENOMETHIONINE
A
MSE
28
MET
A
MSE
244
SELENOMETHIONINE
A
MSE
146
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
156
A
O
THR
58
A
N
ASP
134
A
N
ASP
36
A
N
VAL
135
A
N
VAL
37
A
O
VAL
204
A
O
VAL
106
A
N
ILE
203
A
N
ILE
105
A
O
PHE
260
A
O
PHE
162
A
N
LEU
261
A
N
LEU
163
A
O
ILE
298
A
O
ILE
200
A
O
THR
301
A
O
THR
203
A
N
ARG
284
A
N
ARG
186
A
O
THR
156
A
O
THR
58
A
N
ASP
134
A
N
ASP
36
A
N
VAL
135
A
N
VAL
37
A
O
VAL
204
A
O
VAL
106
A
N
ILE
203
A
N
ILE
105
A
O
PHE
260
A
O
PHE
162
A
N
LEU
261
A
N
LEU
163
A
O
ILE
298
A
O
ILE
200
A
O
VAL
297
A
O
VAL
199
A
N
VAL
288
A
N
VAL
190
1
A
ACT
402
C
ACT
1
A
ACT
402
C
ACT
1
A
CG
ARG
254
A
CG
ARG
156
1
Y
1
A
CD
ARG
254
A
CD
ARG
156
1
Y
1
A
NE
ARG
254
A
NE
ARG
156
1
Y
1
A
CZ
ARG
254
A
CZ
ARG
156
1
Y
1
A
NH1
ARG
254
A
NH1
ARG
156
1
Y
1
A
NH2
ARG
254
A
NH2
ARG
156
1
Y
1
A
CG
GLN
267
A
CG
GLN
169
1
Y
1
A
CD
GLN
267
A
CD
GLN
169
1
Y
1
A
OE1
GLN
267
A
OE1
GLN
169
1
Y
1
A
NE2
GLN
267
A
NE2
GLN
169
1
Y
1
A
CG
ARG
284
A
CG
ARG
186
1
Y
1
A
CD
ARG
284
A
CD
ARG
186
1
Y
1
A
NE
ARG
284
A
NE
ARG
186
1
Y
1
A
CZ
ARG
284
A
CZ
ARG
186
1
Y
1
A
NH1
ARG
284
A
NH1
ARG
186
1
Y
1
A
NH2
ARG
284
A
NH2
ARG
186
1
Y
1
A
MSE
162
A
MSE
64
1
Y
1
A
ASP
163
A
ASP
65
1
Y
1
A
ALA
164
A
ALA
66
1
Y
1
A
LEU
165
A
LEU
67
1
Y
1
A
ALA
166
A
ALA
68
1
Y
1
A
VAL
167
A
VAL
69
1
Y
1
A
ALA
168
A
ALA
70
1
Y
1
A
ARG
169
A
ARG
71
1
Y
1
A
ARG
170
A
ARG
72
1
Y
1
A
ASN
171
A
ASN
73
1
Y
1
A
ALA
172
A
ALA
74
1
Y
1
A
GLU
173
A
GLU
75
1
Y
1
A
ARG
174
A
ARG
76
1
Y
1
A
PHE
175
A
PHE
77
1
Y
1
A
GLY
176
A
GLY
78
1
Y
1
A
ALA
177
A
ALA
79
1
Y
1
A
VAL
178
A
VAL
80
1
Y
1
A
VAL
179
A
VAL
81
1
Y
1
A
ASP
180
A
ASP
82
1
Y
1
A
THR
212
A
THR
114
1
Y
1
A
GLY
213
A
GLY
115
1
Y
1
A
GLU
214
A
GLU
116
1
Y
1
A
ILE
215
A
ILE
117
1
Y
1
A
ASP
216
A
ASP
118
1
Y
1
A
GLN
217
A
GLN
119
1
Y
1
A
LEU
218
A
LEU
120
1
Y
1
A
GLU
219
A
GLU
121
1
Y
1
A
PRO
220
A
PRO
122
1
Y
1
A
SER
221
A
SER
123
1
Y
1
A
VAL
222
A
VAL
124
1
Y
1
A
ARG
223
A
ARG
125
1
Y
1
A
ASP
224
A
ASP
126
1
Y
1
A
TYR
225
A
TYR
127
1
Y
1
A
GLU
226
A
GLU
128
1
Y
1
A
PRO
227
A
PRO
129
1
Y
1
A
ARG
228
A
ARG
130
1
Y
1
A
LEU
229
A
LEU
131
1
Y
1
A
ALA
230
A
ALA
132
1
Y
1
A
LEU
231
A
LEU
133
1
Y
1
A
ASP
232
A
ASP
134
1
Y
1
A
GLY
233
A
GLY
135
1
Y
1
A
GLY
234
A
GLY
136
1
Y
1
A
GLU
235
A
GLU
137
1
Y
1
A
GLY
305
A
GLY
207
1
Y
1
A
SER
306
A
SER
208
1
Y
1
A
PRO
307
A
PRO
209
1
Y
1
A
PRO
308
A
PRO
210
1
Y
1
A
GLU
309
A
GLU
211
1
Y
1
A
SER
310
A
SER
212
1
Y
1
A
GLU
311
A
GLU
213
1
Y
1
A
ASN
312
A
ASN
214
1
Y
1
A
LEU
313
A
LEU
215
1
Y
1
A
ASP
111
-16.44
-71.18
1
A
PRO
127
-69.91
-176.68
1
A
ARG
286
-170.14
134.46
4.4262
0.0000
-0.0000
4.4262
0.0000
-8.8525
0.2689
0.2071
0.2097
2.551
30.883
379
8179
8179
4.63
99.38
0.82
random
1
1.35
MAD
26.26
0.95
1.20
ML
FLAT BULK SOLVENT MODEL
62.155
0.314
2.551
30.883
5
1271
11
0
1255
0.009
1293
1.204
1755
14.615
473
0.069
195
0.004
229
0.3470
0.2855
2.9202
130
2526
100.00
0.2972
0.2116
3.6781
129
2559
100.00
0.2377
0.1925
30.8852
120
2715
99.00
2.55
31.0
4DZR
8235
8235
0
0
0.071
1
28.8
4.5
99.4
0.692
2.55
2.59
2.2
403
1
4.7
100.0
data collection
SBC-Collect
phasing
SHELXD
phasing
MLPHARE
model building
DM
model building
RESOLVE
phasing
HKL-3000
refinement
PHENIX
(phenix.refine: 1.7.1_743)
data reduction
HKL-3000
data scaling
HKL-3000
phasing
DM
phasing
RESOLVE
Protein-(Glutamine-N5) methyltransferase, release factor-specific
The crystal structure of protein-(glutamine-N5) methyltransferase (release factor-specific) from Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
Experimentally unknown. It is predicted the molecule is a monomer.
A
GLY
102
A
GLY
4
HELX_P
A
ILE
107
A
ILE
9
5
1
6
A
ARG
109
A
ARG
11
HELX_P
A
LYS
124
A
LYS
26
1
2
16
A
GLY
140
A
GLY
42
HELX_P
A
CYS
150
A
CYS
52
1
3
11
A
ALA
182
A
ALA
84
HELX_P
A
ARG
196
A
ARG
98
1
4
15
A
LEU
238
A
LEU
140
HELX_P
A
ALA
246
A
ALA
148
1
5
9
A
PRO
248
A
PRO
150
HELX_P
A
LEU
252
A
LEU
154
5
6
5
A
GLN
267
A
GLN
169
HELX_P
A
PHE
275
A
PHE
177
1
7
9
A
ALA
276
A
ALA
178
HELX_P
A
ARG
281
A
ARG
183
5
8
6
disulf
2.071
A
CYS
105
A
SG
CYS
7
1_555
A
CYS
141
A
SG
CYS
43
1_555
covale
1.324
A
ARG
125
A
C
ARG
27
1_555
A
MSE
126
A
N
MSE
28
1_555
covale
1.343
A
MSE
126
A
C
MSE
28
1_555
A
PRO
127
A
N
PRO
29
1_555
covale
1.323
A
ARG
243
A
C
ARG
145
1_555
A
MSE
244
A
N
MSE
146
1_555
covale
1.334
A
MSE
244
A
C
MSE
146
1_555
A
ALA
245
A
N
ALA
147
1_555
metalc
2.570
A
CA
401
B
CA
CA
1_555
A
HOH
503
E
O
HOH
1_555
metalc
2.583
A
ASN
206
A
OD1
ASN
108
1_555
A
CA
401
B
CA
CA
1_555
metalc
2.594
A
GLU
262
A
OE1
GLU
164
1_555
A
CA
401
B
CA
CA
1_555
metalc
2.868
A
ASP
111
A
OD1
ASP
13
1_555
A
CA
401
B
CA
CA
1_555
metalc
3.171
A
ASP
111
A
OD2
ASP
13
1_555
A
CA
401
B
CA
CA
1_555
TRANSFERASE
structural genomics, PSI-Biology, protein structure initiative, midwest center for structural genomics, MCSG, TRANSFERASE
C8WUG7_ALIAD
UNP
1
99
C8WUG7
FEVGPDCLIPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAV
VDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAG
VFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTREPGSPPESENL
99
313
4DZR
99
313
C8WUG7
A
1
1
215
6
6
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
VAL
153
A
VAL
55
A
ASP
159
A
ASP
61
A
THR
130
A
THR
32
A
GLY
136
A
GLY
38
A
ALA
202
A
ALA
104
A
SER
205
A
SER
107
A
ALA
257
A
ALA
159
A
GLU
262
A
GLU
164
A
ASP
295
A
ASP
197
A
ARG
302
A
ARG
204
A
PHE
283
A
PHE
185
A
ARG
284
A
ARG
186
A
VAL
153
A
VAL
55
A
ASP
159
A
ASP
61
A
THR
130
A
THR
32
A
GLY
136
A
GLY
38
A
ALA
202
A
ALA
104
A
SER
205
A
SER
107
A
ALA
257
A
ALA
159
A
GLU
262
A
GLU
164
A
ASP
295
A
ASP
197
A
ARG
302
A
ARG
204
A
LYS
287
A
LYS
189
A
LYS
289
A
LYS
191
BINDING SITE FOR RESIDUE CA A 401
Software
5
BINDING SITE FOR RESIDUE ACT A 402
Software
2
BINDING SITE FOR RESIDUE GOL A 403
Software
4
A
ASP
111
A
ASP
13
5
1_555
A
ASN
206
A
ASN
108
5
1_555
A
PRO
207
A
PRO
109
5
1_555
A
GLU
262
A
GLU
164
5
1_555
A
HOH
503
E
HOH
5
1_555
A
PHE
99
A
PHE
1
2
1_555
A
PHE
99
A
PHE
1
2
7_555
A
GLY
102
A
GLY
4
4
1_555
A
PRO
103
A
PRO
5
4
1_555
A
CYS
105
A
CYS
7
4
1_555
A
ALA
147
A
ALA
49
4
7_555
92
P 41 21 2