0.008321
0.004804
0.000000
0.000000
0.009608
0.000000
0.000000
0.000000
0.012852
0.000000
0.000000
0.000000
Figueiredo, A.C.
de Sanctis, D.
Gutierrez-Gallego, R.
Cereija, T.B.
Macedo-Ribeiro, S.
Fuentes-Prior, P.
Pereira, P.J.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
120.180
120.180
77.810
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
NA
N
251
R
C
N
252
R
C
N
253
R
C
N
254
S
C
N
255
R
C
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
N
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
O
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
R
C
N
340
N
O
N
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
N
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
N
390
N
O
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
N
408
N
C
N
409
N
C
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
Y
278
N
doub
Y
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
doub
N
285
N
sing
Y
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
109
E3649
E3658
10.1073/pnas.1211614109
23223529
Unique thrombin inhibition mechanism by anophelin, an anticoagulant from the malaria vector.
2012
10.2210/pdb4e05/pdb
pdb_00004e05
100
1
CCD
2010-10-29
ADSC QUANTUM 315r
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
ID23-1
ESRF
0.9792
SYNCHROTRON
ESRF BEAMLINE ID23-1
4096.534
Thrombin
3.4.21.5
light chain (UNP residues 328-363)
1
nat
polymer
29780.219
Thrombin
3.4.21.5
heavy chain (UNP residues 364-622)
1
nat
polymer
6542.695
Salivary anti-thrombin peptide anophelin
mature anophelin (UNP residues 23-83)
1
man
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
87
nat
water
Coagulation factor II
Coagulation factor II
no
no
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
L
polypeptide(L)
no
no
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
H
polypeptide(L)
no
no
APQYAPGDEPSYDEDTDDSDKLVENDTSITDEDYAAIEASLSETFNTAADPGRRLGEGSKP
APQYAPGDEPSYDEDTDDSDKLVENDTSITDEDYAAIEASLSETFNTAADPGRRLGEGSKP
I
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
New world malaria mosquito
sample
anophelin
7167
Anopheles albimanus
562
Escherichia coli
ER2566
plasmid
pTYB11
human
sample
9606
Homo sapiens
human
sample
9606
Homo sapiens
1
4.01
69.35
VAPOR DIFFUSION, SITTING DROP
7.5
100 mM HEPES, pH 7.5, 1.4 M tri-sodium citrate, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
pdbx_struct_conn_angle
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Database references
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2012-12-05
1
1
2012-12-26
1
2
2013-01-09
1
3
2020-07-29
1
4
2023-09-13
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
Human alpha-thrombin:inhibitor complex in space group H 3 2
RCSB
Y
RCSB
2012-03-02
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
NA
SODIUM ION
HOH
water
3U69
PDB ENTRY 3U69
PDB
experimental model
NAG
1373
4
NAG
NAG
601
H
NA
1
5
NA
NA
602
H
HOH
16
6
HOH
HOH
401
L
HOH
27
6
HOH
HOH
402
L
HOH
37
6
HOH
HOH
403
L
HOH
39
6
HOH
HOH
404
L
HOH
62
6
HOH
HOH
405
L
HOH
77
6
HOH
HOH
406
L
HOH
90
6
HOH
HOH
407
L
HOH
95
6
HOH
HOH
408
L
HOH
2
6
HOH
HOH
701
H
HOH
3
6
HOH
HOH
702
H
HOH
4
6
HOH
HOH
703
H
HOH
5
6
HOH
HOH
704
H
HOH
6
6
HOH
HOH
705
H
HOH
7
6
HOH
HOH
706
H
HOH
8
6
HOH
HOH
707
H
HOH
9
6
HOH
HOH
708
H
HOH
10
6
HOH
HOH
709
H
HOH
11
6
HOH
HOH
710
H
HOH
12
6
HOH
HOH
711
H
HOH
14
6
HOH
HOH
712
H
HOH
15
6
HOH
HOH
713
H
HOH
17
6
HOH
HOH
714
H
HOH
18
6
HOH
HOH
715
H
HOH
20
6
HOH
HOH
716
H
HOH
21
6
HOH
HOH
717
H
HOH
22
6
HOH
HOH
718
H
HOH
23
6
HOH
HOH
719
H
HOH
24
6
HOH
HOH
720
H
HOH
25
6
HOH
HOH
721
H
HOH
26
6
HOH
HOH
722
H
HOH
28
6
HOH
HOH
723
H
HOH
29
6
HOH
HOH
724
H
HOH
30
6
HOH
HOH
725
H
HOH
31
6
HOH
HOH
726
H
HOH
32
6
HOH
HOH
727
H
HOH
34
6
HOH
HOH
728
H
HOH
35
6
HOH
HOH
729
H
HOH
36
6
HOH
HOH
730
H
HOH
41
6
HOH
HOH
731
H
HOH
43
6
HOH
HOH
732
H
HOH
45
6
HOH
HOH
733
H
HOH
46
6
HOH
HOH
734
H
HOH
48
6
HOH
HOH
735
H
HOH
50
6
HOH
HOH
736
H
HOH
51
6
HOH
HOH
737
H
HOH
52
6
HOH
HOH
738
H
HOH
54
6
HOH
HOH
739
H
HOH
55
6
HOH
HOH
740
H
HOH
56
6
HOH
HOH
741
H
HOH
57
6
HOH
HOH
742
H
HOH
59
6
HOH
HOH
743
H
HOH
60
6
HOH
HOH
744
H
HOH
61
6
HOH
HOH
745
H
HOH
63
6
HOH
HOH
746
H
HOH
64
6
HOH
HOH
747
H
HOH
65
6
HOH
HOH
748
H
HOH
66
6
HOH
HOH
749
H
HOH
67
6
HOH
HOH
750
H
HOH
68
6
HOH
HOH
751
H
HOH
69
6
HOH
HOH
752
H
HOH
70
6
HOH
HOH
753
H
HOH
71
6
HOH
HOH
754
H
HOH
72
6
HOH
HOH
755
H
HOH
73
6
HOH
HOH
756
H
HOH
74
6
HOH
HOH
757
H
HOH
75
6
HOH
HOH
758
H
HOH
76
6
HOH
HOH
759
H
HOH
78
6
HOH
HOH
760
H
HOH
79
6
HOH
HOH
761
H
HOH
80
6
HOH
HOH
762
H
HOH
81
6
HOH
HOH
763
H
HOH
83
6
HOH
HOH
764
H
HOH
84
6
HOH
HOH
765
H
HOH
85
6
HOH
HOH
766
H
HOH
86
6
HOH
HOH
767
H
HOH
87
6
HOH
HOH
768
H
HOH
88
6
HOH
HOH
769
H
HOH
92
6
HOH
HOH
770
H
HOH
93
6
HOH
HOH
771
H
HOH
94
6
HOH
HOH
772
H
HOH
13
6
HOH
HOH
101
I
HOH
19
6
HOH
HOH
102
I
HOH
40
6
HOH
HOH
103
I
HOH
53
6
HOH
HOH
104
I
HOH
58
6
HOH
HOH
105
I
HOH
89
6
HOH
HOH
106
I
HOH
91
6
HOH
HOH
107
I
n
1
285
L
n
2
286
L
n
3
287
L
n
4
288
L
n
5
289
L
GLU
290
n
6
GLU
290
L
ALA
291
n
7
ALA
291
L
ASP
292
n
8
ASP
292
L
CYS
293
n
9
CYS
293
L
GLY
294
n
10
GLY
294
L
LEU
295
n
11
LEU
295
L
ARG
296
n
12
ARG
296
L
PRO
297
n
13
PRO
297
L
LEU
298
n
14
LEU
298
L
PHE
299
n
15
PHE
299
L
GLU
300
n
16
GLU
300
L
LYS
301
n
17
LYS
301
L
LYS
302
n
18
LYS
302
L
SER
303
n
19
SER
303
L
LEU
304
n
20
LEU
304
L
GLU
305
n
21
GLU
305
L
ASP
306
n
22
ASP
306
L
LYS
307
n
23
LYS
307
L
THR
308
n
24
THR
308
L
GLU
309
n
25
GLU
309
L
ARG
310
n
26
ARG
310
L
GLU
311
n
27
GLU
311
L
LEU
312
n
28
LEU
312
L
LEU
313
n
29
LEU
313
L
GLU
314
n
30
GLU
314
L
SER
315
n
31
SER
315
L
TYR
316
n
32
TYR
316
L
ILE
317
n
33
ILE
317
L
ASP
318
n
34
ASP
318
L
n
35
319
L
n
36
320
L
ILE
321
n
1
ILE
321
H
VAL
322
n
2
VAL
322
H
GLU
323
n
3
GLU
323
H
GLY
324
n
4
GLY
324
H
SER
325
n
5
SER
325
H
ASP
326
n
6
ASP
326
H
ALA
327
n
7
ALA
327
H
GLU
328
n
8
GLU
328
H
ILE
329
n
9
ILE
329
H
GLY
330
n
10
GLY
330
H
MET
331
n
11
MET
331
H
SER
332
n
12
SER
332
H
PRO
333
n
13
PRO
333
H
TRP
334
n
14
TRP
334
H
GLN
335
n
15
GLN
335
H
VAL
336
n
16
VAL
336
H
MET
337
n
17
MET
337
H
LEU
338
n
18
LEU
338
H
PHE
339
n
19
PHE
339
H
ARG
340
n
20
ARG
340
H
LYS
341
n
21
LYS
341
H
SER
342
n
22
SER
342
H
PRO
343
n
23
PRO
343
H
GLN
344
n
24
GLN
344
H
GLU
345
n
25
GLU
345
H
LEU
346
n
26
LEU
346
H
LEU
347
n
27
LEU
347
H
CYS
348
n
28
CYS
348
H
GLY
349
n
29
GLY
349
H
ALA
350
n
30
ALA
350
H
SER
351
n
31
SER
351
H
LEU
352
n
32
LEU
352
H
ILE
353
n
33
ILE
353
H
SER
354
n
34
SER
354
H
ASP
355
n
35
ASP
355
H
ARG
356
n
36
ARG
356
H
TRP
357
n
37
TRP
357
H
VAL
358
n
38
VAL
358
H
LEU
359
n
39
LEU
359
H
THR
360
n
40
THR
360
H
ALA
361
n
41
ALA
361
H
ALA
362
n
42
ALA
362
H
HIS
363
n
43
HIS
363
H
CYS
364
n
44
CYS
364
H
LEU
365
n
45
LEU
365
H
LEU
366
n
46
LEU
366
H
TYR
367
n
47
TYR
367
H
PRO
368
n
48
PRO
368
H
PRO
369
n
49
PRO
369
H
TRP
370
n
50
TRP
370
H
ASP
371
n
51
ASP
371
H
LYS
372
n
52
LYS
372
H
ASN
373
n
53
ASN
373
H
PHE
374
n
54
PHE
374
H
THR
375
n
55
THR
375
H
GLU
376
n
56
GLU
376
H
ASN
377
n
57
ASN
377
H
ASP
378
n
58
ASP
378
H
LEU
379
n
59
LEU
379
H
LEU
380
n
60
LEU
380
H
VAL
381
n
61
VAL
381
H
ARG
382
n
62
ARG
382
H
ILE
383
n
63
ILE
383
H
GLY
384
n
64
GLY
384
H
LYS
385
n
65
LYS
385
H
HIS
386
n
66
HIS
386
H
SER
387
n
67
SER
387
H
ARG
388
n
68
ARG
388
H
THR
389
n
69
THR
389
H
ARG
390
n
70
ARG
390
H
TYR
391
n
71
TYR
391
H
GLU
392
n
72
GLU
392
H
ARG
393
n
73
ARG
393
H
ASN
394
n
74
ASN
394
H
ILE
395
n
75
ILE
395
H
GLU
396
n
76
GLU
396
H
LYS
397
n
77
LYS
397
H
ILE
398
n
78
ILE
398
H
SER
399
n
79
SER
399
H
MET
400
n
80
MET
400
H
LEU
401
n
81
LEU
401
H
GLU
402
n
82
GLU
402
H
LYS
403
n
83
LYS
403
H
ILE
404
n
84
ILE
404
H
TYR
405
n
85
TYR
405
H
ILE
406
n
86
ILE
406
H
HIS
407
n
87
HIS
407
H
PRO
408
n
88
PRO
408
H
ARG
409
n
89
ARG
409
H
TYR
410
n
90
TYR
410
H
ASN
411
n
91
ASN
411
H
TRP
412
n
92
TRP
412
H
ARG
413
n
93
ARG
413
H
GLU
414
n
94
GLU
414
H
ASN
415
n
95
ASN
415
H
LEU
416
n
96
LEU
416
H
ASP
417
n
97
ASP
417
H
ARG
418
n
98
ARG
418
H
ASP
419
n
99
ASP
419
H
ILE
420
n
100
ILE
420
H
ALA
421
n
101
ALA
421
H
LEU
422
n
102
LEU
422
H
MET
423
n
103
MET
423
H
LYS
424
n
104
LYS
424
H
LEU
425
n
105
LEU
425
H
LYS
426
n
106
LYS
426
H
LYS
427
n
107
LYS
427
H
PRO
428
n
108
PRO
428
H
VAL
429
n
109
VAL
429
H
ALA
430
n
110
ALA
430
H
PHE
431
n
111
PHE
431
H
SER
432
n
112
SER
432
H
ASP
433
n
113
ASP
433
H
TYR
434
n
114
TYR
434
H
ILE
435
n
115
ILE
435
H
HIS
436
n
116
HIS
436
H
PRO
437
n
117
PRO
437
H
VAL
438
n
118
VAL
438
H
CYS
439
n
119
CYS
439
H
LEU
440
n
120
LEU
440
H
PRO
441
n
121
PRO
441
H
ASP
442
n
122
ASP
442
H
ARG
443
n
123
ARG
443
H
GLU
444
n
124
GLU
444
H
THR
445
n
125
THR
445
H
ALA
446
n
126
ALA
446
H
ALA
447
n
127
ALA
447
H
SER
448
n
128
SER
448
H
LEU
449
n
129
LEU
449
H
LEU
450
n
130
LEU
450
H
GLN
451
n
131
GLN
451
H
ALA
452
n
132
ALA
452
H
GLY
453
n
133
GLY
453
H
TYR
454
n
134
TYR
454
H
LYS
455
n
135
LYS
455
H
GLY
456
n
136
GLY
456
H
ARG
457
n
137
ARG
457
H
VAL
458
n
138
VAL
458
H
THR
459
n
139
THR
459
H
GLY
460
n
140
GLY
460
H
TRP
461
n
141
TRP
461
H
GLY
462
n
142
GLY
462
H
ASN
463
n
143
ASN
463
H
LEU
464
n
144
LEU
464
H
LYS
465
n
145
LYS
465
H
GLU
466
n
146
GLU
466
H
THR
467
n
147
THR
467
H
n
148
468
H
n
149
469
H
n
150
470
H
n
151
471
H
n
152
472
H
n
153
473
H
LYS
474
n
154
LYS
474
H
GLY
475
n
155
GLY
475
H
GLN
476
n
156
GLN
476
H
PRO
477
n
157
PRO
477
H
SER
478
n
158
SER
478
H
VAL
479
n
159
VAL
479
H
LEU
480
n
160
LEU
480
H
GLN
481
n
161
GLN
481
H
VAL
482
n
162
VAL
482
H
VAL
483
n
163
VAL
483
H
ASN
484
n
164
ASN
484
H
LEU
485
n
165
LEU
485
H
PRO
486
n
166
PRO
486
H
ILE
487
n
167
ILE
487
H
VAL
488
n
168
VAL
488
H
GLU
489
n
169
GLU
489
H
ARG
490
n
170
ARG
490
H
PRO
491
n
171
PRO
491
H
VAL
492
n
172
VAL
492
H
CYS
493
n
173
CYS
493
H
LYS
494
n
174
LYS
494
H
ASP
495
n
175
ASP
495
H
SER
496
n
176
SER
496
H
THR
497
n
177
THR
497
H
ARG
498
n
178
ARG
498
H
ILE
499
n
179
ILE
499
H
ARG
500
n
180
ARG
500
H
ILE
501
n
181
ILE
501
H
THR
502
n
182
THR
502
H
ASP
503
n
183
ASP
503
H
ASN
504
n
184
ASN
504
H
MET
505
n
185
MET
505
H
PHE
506
n
186
PHE
506
H
CYS
507
n
187
CYS
507
H
ALA
508
n
188
ALA
508
H
GLY
509
n
189
GLY
509
H
TYR
510
n
190
TYR
510
H
LYS
511
n
191
LYS
511
H
PRO
512
n
192
PRO
512
H
ASP
513
n
193
ASP
513
H
GLU
514
n
194
GLU
514
H
GLY
515
n
195
GLY
515
H
LYS
516
n
196
LYS
516
H
ARG
517
n
197
ARG
517
H
GLY
518
n
198
GLY
518
H
ASP
519
n
199
ASP
519
H
ALA
520
n
200
ALA
520
H
CYS
521
n
201
CYS
521
H
GLU
522
n
202
GLU
522
H
GLY
523
n
203
GLY
523
H
ASP
524
n
204
ASP
524
H
SER
525
n
205
SER
525
H
GLY
526
n
206
GLY
526
H
GLY
527
n
207
GLY
527
H
PRO
528
n
208
PRO
528
H
PHE
529
n
209
PHE
529
H
VAL
530
n
210
VAL
530
H
MET
531
n
211
MET
531
H
LYS
532
n
212
LYS
532
H
SER
533
n
213
SER
533
H
PRO
534
n
214
PRO
534
H
PHE
535
n
215
PHE
535
H
ASN
536
n
216
ASN
536
H
ASN
537
n
217
ASN
537
H
ARG
538
n
218
ARG
538
H
TRP
539
n
219
TRP
539
H
TYR
540
n
220
TYR
540
H
GLN
541
n
221
GLN
541
H
MET
542
n
222
MET
542
H
GLY
543
n
223
GLY
543
H
ILE
544
n
224
ILE
544
H
VAL
545
n
225
VAL
545
H
SER
546
n
226
SER
546
H
TRP
547
n
227
TRP
547
H
GLY
548
n
228
GLY
548
H
GLU
549
n
229
GLU
549
H
GLY
550
n
230
GLY
550
H
CYS
551
n
231
CYS
551
H
ASP
552
n
232
ASP
552
H
ARG
553
n
233
ARG
553
H
ASP
554
n
234
ASP
554
H
GLY
555
n
235
GLY
555
H
LYS
556
n
236
LYS
556
H
TYR
557
n
237
TYR
557
H
GLY
558
n
238
GLY
558
H
PHE
559
n
239
PHE
559
H
TYR
560
n
240
TYR
560
H
THR
561
n
241
THR
561
H
HIS
562
n
242
HIS
562
H
VAL
563
n
243
VAL
563
H
PHE
564
n
244
PHE
564
H
ARG
565
n
245
ARG
565
H
LEU
566
n
246
LEU
566
H
LYS
567
n
247
LYS
567
H
LYS
568
n
248
LYS
568
H
TRP
569
n
249
TRP
569
H
ILE
570
n
250
ILE
570
H
GLN
571
n
251
GLN
571
H
LYS
572
n
252
LYS
572
H
VAL
573
n
253
VAL
573
H
ILE
574
n
254
ILE
574
H
ASP
575
n
255
ASP
575
H
GLN
576
n
256
GLN
576
H
PHE
577
n
257
PHE
577
H
GLY
578
n
258
GLY
578
H
GLU
579
n
259
GLU
579
H
n
1
1
I
n
2
2
I
n
3
3
I
n
4
4
I
n
5
5
I
n
6
6
I
n
7
7
I
n
8
8
I
n
9
9
I
n
10
10
I
n
11
11
I
n
12
12
I
n
13
13
I
n
14
14
I
n
15
15
I
n
16
16
I
n
17
17
I
n
18
18
I
n
19
19
I
n
20
20
I
n
21
21
I
n
22
22
I
n
23
23
I
n
24
24
I
n
25
25
I
n
26
26
I
n
27
27
I
n
28
28
I
n
29
29
I
n
30
30
I
n
31
31
I
GLU
32
n
32
GLU
32
I
ASP
33
n
33
ASP
33
I
TYR
34
n
34
TYR
34
I
ALA
35
n
35
ALA
35
I
ALA
36
n
36
ALA
36
I
ILE
37
n
37
ILE
37
I
GLU
38
n
38
GLU
38
I
ALA
39
n
39
ALA
39
I
SER
40
n
40
SER
40
I
LEU
41
n
41
LEU
41
I
SER
42
n
42
SER
42
I
GLU
43
n
43
GLU
43
I
THR
44
n
44
THR
44
I
PHE
45
n
45
PHE
45
I
ASN
46
n
46
ASN
46
I
THR
47
n
47
THR
47
I
ALA
48
n
48
ALA
48
I
ALA
49
n
49
ALA
49
I
ASP
50
n
50
ASP
50
I
PRO
51
n
51
PRO
51
I
GLY
52
n
52
GLY
52
I
ARG
53
n
53
ARG
53
I
ARG
54
n
54
ARG
54
I
LEU
55
n
55
LEU
55
I
GLY
56
n
56
GLY
56
I
GLU
57
n
57
GLU
57
I
GLY
58
n
58
GLY
58
I
SER
59
n
59
SER
59
I
LYS
60
n
60
LYS
60
I
PRO
61
n
61
PRO
61
I
3.1992
-0.6441
1.0504
2.8546
-0.5031
2.1589
0.1302
0.3886
-0.0914
-0.3377
-0.1334
-0.1091
0.0413
0.3758
0.0266
0.3277
0.0027
0.0097
0.3951
0.0512
0.3692
refined
44.3012
-1.2088
2.3464
X-RAY DIFFRACTION
2.4010
-0.9055
0.6734
3.1343
-1.2317
2.0828
0.0754
-0.0557
-0.2344
0.0346
0.1929
0.7269
-0.0183
-0.2152
-0.2484
0.2567
-0.0113
0.0098
0.3218
0.0938
0.4561
refined
31.4936
-2.4733
10.5958
X-RAY DIFFRACTION
6.4717
-2.6090
-2.6311
2.9823
3.0986
6.1860
0.0745
0.4884
-0.8697
-0.3273
-0.0822
1.0130
0.4499
-0.4990
0.1750
0.5355
-0.0472
-0.1416
0.3588
0.1139
0.5447
refined
29.0802
-7.8647
2.8042
X-RAY DIFFRACTION
6.5228
3.8787
5.5159
2.5934
3.1809
4.6993
0.7762
-0.4230
-0.6516
-0.7558
0.3431
-2.8831
0.4569
2.7215
-1.1024
0.7873
0.3204
0.2497
2.0096
0.0087
1.7491
refined
62.4712
-2.1480
-1.4531
X-RAY DIFFRACTION
1.8904
-3.7861
1.4149
8.1606
-1.8721
3.4136
0.1098
0.8492
1.7972
-0.4177
-0.1369
-0.5567
-0.1810
0.3157
-0.0219
0.4108
-0.0909
-0.0424
0.3936
0.0636
0.4636
refined
39.5372
11.6021
4.0227
X-RAY DIFFRACTION
9.6411
2.0360
5.8336
8.9161
-0.0621
3.7282
0.4147
-0.1825
-1.3061
0.0875
0.3938
0.2956
0.6888
0.1156
-0.9388
0.4512
0.0426
-0.0472
0.4860
0.1367
0.7372
refined
44.3496
-16.6011
18.4342
X-RAY DIFFRACTION
5.8025
5.6250
-4.6537
5.4597
-4.5136
3.7320
1.0354
-0.9101
0.1900
1.0431
-0.4808
0.2343
-0.3883
0.2584
-0.6641
0.6182
-0.0408
0.0932
0.5020
0.1187
0.6706
refined
32.9571
-8.5785
26.6877
X-RAY DIFFRACTION
H
321
H
408
X-RAY DIFFRACTION
1
(chain H and resid 321:408)
H
409
H
552
X-RAY DIFFRACTION
2
(chain H and resid 409:552)
H
553
H
579
X-RAY DIFFRACTION
3
(chain H and resid 553:579)
I
32
I
39
X-RAY DIFFRACTION
4
(chain I and resid 32:39)
I
40
I
61
X-RAY DIFFRACTION
5
(chain I and resid 40:61)
L
290
L
305
X-RAY DIFFRACTION
6
(chain L and resid 290:305)
L
306
L
318
X-RAY DIFFRACTION
7
(chain L and resid 306:318)
author_and_software_defined_assembly
PISA
3
trimeric
5380
-29
13590
H
ARG
553
B
O
ARG
233
1_555
H
NA
602
E
NA
NA
1_555
H
LYS
556
B
O
LYS
236
1_555
91.9
H
ARG
553
B
O
ARG
233
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
753
G
O
HOH
1_555
159.6
H
LYS
556
B
O
LYS
236
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
753
G
O
HOH
1_555
70.8
H
ARG
553
B
O
ARG
233
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
754
G
O
HOH
1_555
88.6
H
LYS
556
B
O
LYS
236
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
754
G
O
HOH
1_555
93.5
H
HOH
753
G
O
HOH
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
754
G
O
HOH
1_555
81.9
H
ARG
553
B
O
ARG
233
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
755
G
O
HOH
1_555
102.5
H
LYS
556
B
O
LYS
236
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
755
G
O
HOH
1_555
164.9
H
HOH
753
G
O
HOH
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
755
G
O
HOH
1_555
94.1
H
HOH
754
G
O
HOH
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
755
G
O
HOH
1_555
82.7
H
ARG
553
B
O
ARG
233
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
756
G
O
HOH
1_555
96.5
H
LYS
556
B
O
LYS
236
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
756
G
O
HOH
1_555
81.1
H
HOH
753
G
O
HOH
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
756
G
O
HOH
1_555
91.6
H
HOH
754
G
O
HOH
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
756
G
O
HOH
1_555
172.7
H
HOH
755
G
O
HOH
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
756
G
O
HOH
1_555
101.2
H
ASN
373
GLYCOSYLATION SITE
B
ASN
53
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
SER
325
B
N
SER
5
H
O
VAL
482
B
O
VAL
162
H
O
VAL
483
B
O
VAL
163
H
N
VAL
458
B
N
VAL
138
H
N
ARG
457
B
N
ARG
137
H
O
VAL
530
B
O
VAL
210
H
N
MET
531
B
N
MET
211
H
O
TYR
540
B
O
TYR
220
H
N
TRP
547
B
N
TRP
227
H
O
PHE
559
B
O
PHE
239
H
O
TYR
560
B
O
TYR
240
H
N
PHE
506
B
N
PHE
186
H
N
ARG
340
B
N
ARG
20
H
O
GLU
345
B
O
GLU
25
H
N
SER
351
B
N
SER
31
H
O
LEU
359
B
O
LEU
39
H
N
THR
360
B
N
THR
40
H
O
ALA
421
B
O
ALA
101
H
O
LYS
424
B
O
LYS
104
H
N
GLU
402
B
N
GLU
82
H
O
LYS
397
B
O
LYS
77
H
N
ILE
383
B
N
ILE
63
H
O
LEU
380
B
O
LEU
60
H
N
PHE
339
B
N
PHE
19
H
N
TYR
367
B
N
TYR
47
H
O
LYS
372
B
O
LYS
52
1
L
HOH
406
F
HOH
1
H
HOH
771
G
HOH
1
L
THR
285
A
THR
1
1
Y
1
L
PHE
286
A
PHE
2
1
Y
1
L
GLY
287
A
GLY
3
1
Y
1
L
SER
288
A
SER
4
1
Y
1
L
GLY
289
A
GLY
5
1
Y
1
L
GLY
319
A
GLY
35
1
Y
1
L
ARG
320
A
ARG
36
1
Y
1
H
TRP
468
B
TRP
148
1
Y
1
H
THR
469
B
THR
149
1
Y
1
H
ALA
470
B
ALA
150
1
Y
1
H
ASN
471
B
ASN
151
1
Y
1
H
VAL
472
B
VAL
152
1
Y
1
H
GLY
473
B
GLY
153
1
Y
1
I
ALA
1
C
ALA
1
1
Y
1
I
PRO
2
C
PRO
2
1
Y
1
I
GLN
3
C
GLN
3
1
Y
1
I
TYR
4
C
TYR
4
1
Y
1
I
ALA
5
C
ALA
5
1
Y
1
I
PRO
6
C
PRO
6
1
Y
1
I
GLY
7
C
GLY
7
1
Y
1
I
ASP
8
C
ASP
8
1
Y
1
I
GLU
9
C
GLU
9
1
Y
1
I
PRO
10
C
PRO
10
1
Y
1
I
SER
11
C
SER
11
1
Y
1
I
TYR
12
C
TYR
12
1
Y
1
I
ASP
13
C
ASP
13
1
Y
1
I
GLU
14
C
GLU
14
1
Y
1
I
ASP
15
C
ASP
15
1
Y
1
I
THR
16
C
THR
16
1
Y
1
I
ASP
17
C
ASP
17
1
Y
1
I
ASP
18
C
ASP
18
1
Y
1
I
SER
19
C
SER
19
1
Y
1
I
ASP
20
C
ASP
20
1
Y
1
I
LYS
21
C
LYS
21
1
Y
1
I
LEU
22
C
LEU
22
1
Y
1
I
VAL
23
C
VAL
23
1
Y
1
I
GLU
24
C
GLU
24
1
Y
1
I
ASN
25
C
ASN
25
1
Y
1
I
ASP
26
C
ASP
26
1
Y
1
I
THR
27
C
THR
27
1
Y
1
I
SER
28
C
SER
28
1
Y
1
I
ILE
29
C
ILE
29
1
Y
1
I
THR
30
C
THR
30
1
Y
1
I
ASP
31
C
ASP
31
1
Y
1
L
PHE
299
-131.36
-87.70
1
H
ASN
373
-152.49
73.80
1
H
HIS
386
-127.80
-59.40
1
H
ILE
395
-137.29
-64.12
1
H
ASN
411
-110.69
79.94
1
H
GLU
414
-134.18
-66.78
1
H
SER
546
-117.12
-70.20
1
I
TYR
34
-138.25
-65.15
1
I
ALA
35
-160.52
-55.86
1
I
GLU
38
-82.76
31.10
193.350
63.1407
32.990
-12.4073
0.0000
0.0000
-12.4073
-0.0000
24.8146
0.2014
0.1693
0.1709
2.304
32.658
1438
28423
28396
5.06
99.7400
1.000
0.500
0.7800
RANDOM
1
1.350
MOLECULAR REPLACEMENT
22.9700
0.7300
1.0000
PDB ENTRY 3U69
ML
FLAT BULK SOLVENT MODEL
61.8600
0.3710
2.304
32.658
87
2611
15
0
2509
0.009
2591
1.059
3497
0.073
364
0.004
451
14.093
984
0.3479
0.3174
2.3866
145
2651
2796
10
99.0
0.3367
0.2989
2.4821
146
2655
2801
10
100.0
0.3075
0.2563
2.5951
141
2697
2838
10
100.0
0.2415
0.2159
2.7318
157
2682
2839
10
100.0
0.2290
0.1867
2.9029
150
2672
2822
10
100.0
0.1976
0.1855
3.1268
138
2707
2845
10
100.0
0.2296
0.1745
3.4412
157
2678
2835
10
100.0
0.1803
0.1486
3.9384
137
2711
2848
10
100.0
0.1474
0.1249
4.9592
128
2745
2873
10
100.0
0.1779
0.1599
32.6610
139
2760
2899
10
99.0
2.304
104.079
4E05
28423
28423
0
0
0.061
1
16.6
5.8
99.8
0.683
2.304
2.430
1.10
16797
4113
0.683
1
4.1
99.0
0.395
2.430
2.580
1.90
23016
3883
0.395
1
5.9
100.0
0.238
2.580
2.750
3.20
23114
3683
0.238
1
6.3
100.0
0.141
2.750
2.970
5.20
21609
3441
0.141
1
6.3
100.0
0.084
2.970
3.260
8.00
19722
3150
0.084
1
6.3
100.0
0.056
3.260
3.640
10.20
17844
2867
0.056
1
6.2
100.0
0.046
3.640
4.210
11.90
15561
2521
0.046
1
6.2
100.0
0.043
4.210
5.150
13.10
13110
2149
0.043
1
6.1
100.0
0.042
5.150
7.290
13.60
9931
1676
0.042
1
5.9
100.0
0.039
7.290
62.320
14.10
5345
940
0.039
1
5.7
98.8
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2010/01/06
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.3.16
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.7.2_869
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
DNA
data reduction
XDS
Anophelin from the malaria vector inhibits thrombin through a novel reverse-binding mechanism
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
L
PHE
299
A
PHE
15
HELX_P
L
SER
303
A
SER
19
5
1
5
L
THR
308
A
THR
24
HELX_P
L
ASP
318
A
ASP
34
1
2
11
H
ALA
361
B
ALA
41
HELX_P
H
CYS
364
B
CYS
44
5
3
4
H
PRO
368
B
PRO
48
HELX_P
H
ASP
371
B
ASP
51
5
4
4
H
THR
375
B
THR
55
HELX_P
H
ASN
377
B
ASN
57
5
5
3
H
ASP
442
B
ASP
122
HELX_P
H
LEU
450
B
LEU
130
1
6
9
H
GLU
489
B
GLU
169
HELX_P
H
SER
496
B
SER
176
1
7
8
H
LYS
511
B
LYS
191
HELX_P
H
GLY
515
B
GLY
195
5
8
5
H
LEU
566
B
LEU
246
HELX_P
H
GLY
578
B
GLY
258
1
9
13
I
ASP
50
C
ASP
50
HELX_P
I
ARG
54
C
ARG
54
5
10
5
I
LEU
55
C
LEU
55
HELX_P
I
SER
59
C
SER
59
5
11
5
disulf
2.039
L
CYS
293
A
SG
CYS
9
1_555
H
CYS
439
B
SG
CYS
119
1_555
disulf
2.053
H
CYS
348
B
SG
CYS
28
1_555
H
CYS
364
B
SG
CYS
44
1_555
disulf
2.035
H
CYS
493
B
SG
CYS
173
1_555
H
CYS
507
B
SG
CYS
187
1_555
disulf
2.079
H
CYS
521
B
SG
CYS
201
1_555
H
CYS
551
B
SG
CYS
231
1_555
covale
1.444
one
N-Glycosylation
H
ASN
373
B
ND2
ASN
53
1_555
H
NAG
601
D
C1
NAG
1_555
metalc
2.427
H
ARG
553
B
O
ARG
233
1_555
H
NA
602
E
NA
NA
1_555
metalc
2.248
H
LYS
556
B
O
LYS
236
1_555
H
NA
602
E
NA
NA
1_555
metalc
2.487
H
NA
602
E
NA
NA
1_555
H
HOH
753
G
O
HOH
1_555
metalc
2.572
H
NA
602
E
NA
NA
1_555
H
HOH
754
G
O
HOH
1_555
metalc
2.362
H
NA
602
E
NA
NA
1_555
H
HOH
755
G
O
HOH
1_555
metalc
2.468
H
NA
602
E
NA
NA
1_555
H
HOH
756
G
O
HOH
1_555
HYDROLASE/HYDROLASE INHIBITOR
HYDROLASE-HYDROLASE INHIBITOR complex
H
SER
342
B
SER
22
1
H
PRO
343
B
PRO
23
-2.02
THRB_HUMAN
UNP
1
328
P00734
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
THRB_HUMAN
UNP
2
364
P00734
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
Q9NJS1_ANOAL
UNP
3
23
Q9NJS1
APQYAPGDEPSYDEDTDDSDKLVENDTSITDEDYAAIEASLSETFNTAADPGRRLGEGSKP
328
363
4E05
285
320
P00734
L
1
1
36
364
622
4E05
321
579
P00734
H
2
1
259
23
83
4E05
1
61
Q9NJS1
I
3
1
61
7
7
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
SER
325
B
SER
5
H
ASP
326
B
ASP
6
H
GLN
481
B
GLN
161
H
PRO
486
B
PRO
166
H
LYS
455
B
LYS
135
H
GLY
460
B
GLY
140
H
PRO
528
B
PRO
208
H
LYS
532
B
LYS
212
H
TRP
539
B
TRP
219
H
TRP
547
B
TRP
227
H
GLY
558
B
GLY
238
H
HIS
562
B
HIS
242
H
MET
505
B
MET
185
H
ALA
508
B
ALA
188
H
GLN
335
B
GLN
15
H
ARG
340
B
ARG
20
H
GLU
345
B
GLU
25
H
LEU
352
B
LEU
32
H
TRP
357
B
TRP
37
H
THR
360
B
THR
40
H
ALA
421
B
ALA
101
H
LEU
425
B
LEU
105
H
LYS
397
B
LYS
77
H
ILE
406
B
ILE
86
H
LEU
379
B
LEU
59
H
ILE
383
B
ILE
63
H
GLN
335
B
GLN
15
H
ARG
340
B
ARG
20
H
LEU
366
B
LEU
46
H
TYR
367
B
TYR
47
H
LYS
372
B
LYS
52
H
ASN
373
B
ASN
53
151
P 31 1 2