0.004770
0.002754
0.000000
0.000000
0.005508
0.000000
0.000000
0.000000
0.007849
0.000000
0.000000
0.000000
Figueiredo, A.C.
de Sanctis, D.
Gutierrez-Gallego, R.
Cereija, T.B.
Macedo-Ribeiro, S.
Fuentes-Prior, P.
Pereira, P.J.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.000
90.000
120.000
209.659
209.659
127.412
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
NA
N
251
R
C
N
252
R
C
N
253
R
C
N
254
S
C
N
255
R
C
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
N
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
N
326
N
O
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
R
C
N
340
N
O
N
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
N
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
N
390
N
O
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
N
408
N
C
N
409
N
C
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
Y
278
N
doub
Y
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
doub
N
285
N
sing
Y
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
109
E3649
E3658
10.1073/pnas.1211614109
23223529
Unique thrombin inhibition mechanism by anophelin, an anticoagulant from the malaria vector.
2012
10.2210/pdb4e06/pdb
pdb_00004e06
100
1
PIXEL
2010-09-30
DECTRIS PILATUS 6M
channel-cut Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9763
1.0
ID29
ESRF
0.9763
SYNCHROTRON
ESRF BEAMLINE ID29
4096.534
Thrombin
3.4.21.5
light chain (UNP residues 328-363)
1
nat
polymer
29780.219
Thrombin
3.4.21.5
heavy chain (UNP residues 364-622)
1
nat
polymer
6542.695
Salivary anti-thrombin peptide anophelin
mature anophelin (UNP residues 23-83)
1
man
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
23
nat
water
Coagulation factor II
Coagulation factor II
no
no
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
L
polypeptide(L)
no
no
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
H
polypeptide(L)
no
no
APQYAPGDEPSYDEDTDDSDKLVENDTSITDEDYAAIEASLSETFNTAADPGRRLGEGSKP
APQYAPGDEPSYDEDTDDSDKLVENDTSITDEDYAAIEASLSETFNTAADPGRRLGEGSKP
I
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
New world malaria mosquito
sample
anophelin
7167
Anopheles albimanus
562
Escherichia coli
ER2566
plasmid
pTYB11
human
sample
9606
Homo sapiens
human
sample
9606
Homo sapiens
1
6.67
81.55
VAPOR DIFFUSION, SITTING DROP
4.5
100 mM sodium acetate, pH 4.5, 3 M sodium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
pdbx_struct_conn_angle
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Database references
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2012-12-05
1
1
2012-12-26
1
2
2013-01-09
1
3
2020-07-29
1
4
2023-09-13
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
Human alpha-thrombin:inhibitor complex in space group P 31 1 2
RCSB
Y
RCSB
2012-03-02
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
NA
SODIUM ION
HOH
water
3U69
PDB ENTRY 3U69
PDB
experimental model
NAG
1373
4
NAG
NAG
601
H
NA
1
5
NA
NA
602
H
HOH
2
6
HOH
HOH
701
H
HOH
3
6
HOH
HOH
702
H
HOH
4
6
HOH
HOH
703
H
HOH
5
6
HOH
HOH
704
H
HOH
6
6
HOH
HOH
705
H
HOH
8
6
HOH
HOH
706
H
HOH
9
6
HOH
HOH
707
H
HOH
10
6
HOH
HOH
708
H
HOH
12
6
HOH
HOH
709
H
HOH
14
6
HOH
HOH
710
H
HOH
15
6
HOH
HOH
711
H
HOH
16
6
HOH
HOH
712
H
HOH
17
6
HOH
HOH
713
H
HOH
18
6
HOH
HOH
714
H
HOH
19
6
HOH
HOH
715
H
HOH
20
6
HOH
HOH
716
H
HOH
21
6
HOH
HOH
717
H
HOH
22
6
HOH
HOH
718
H
HOH
23
6
HOH
HOH
719
H
HOH
24
6
HOH
HOH
720
H
HOH
7
6
HOH
HOH
101
I
HOH
11
6
HOH
HOH
102
I
HOH
13
6
HOH
HOH
103
I
n
1
285
L
n
2
286
L
n
3
287
L
n
4
288
L
n
5
289
L
n
6
290
L
ALA
291
n
7
ALA
291
L
ASP
292
n
8
ASP
292
L
CYS
293
n
9
CYS
293
L
GLY
294
n
10
GLY
294
L
LEU
295
n
11
LEU
295
L
ARG
296
n
12
ARG
296
L
PRO
297
n
13
PRO
297
L
LEU
298
n
14
LEU
298
L
PHE
299
n
15
PHE
299
L
GLU
300
n
16
GLU
300
L
LYS
301
n
17
LYS
301
L
LYS
302
n
18
LYS
302
L
SER
303
n
19
SER
303
L
LEU
304
n
20
LEU
304
L
GLU
305
n
21
GLU
305
L
ASP
306
n
22
ASP
306
L
LYS
307
n
23
LYS
307
L
THR
308
n
24
THR
308
L
GLU
309
n
25
GLU
309
L
ARG
310
n
26
ARG
310
L
GLU
311
n
27
GLU
311
L
LEU
312
n
28
LEU
312
L
LEU
313
n
29
LEU
313
L
GLU
314
n
30
GLU
314
L
SER
315
n
31
SER
315
L
TYR
316
n
32
TYR
316
L
ILE
317
n
33
ILE
317
L
ASP
318
n
34
ASP
318
L
n
35
319
L
n
36
320
L
ILE
321
n
1
ILE
321
H
VAL
322
n
2
VAL
322
H
GLU
323
n
3
GLU
323
H
GLY
324
n
4
GLY
324
H
SER
325
n
5
SER
325
H
ASP
326
n
6
ASP
326
H
ALA
327
n
7
ALA
327
H
GLU
328
n
8
GLU
328
H
ILE
329
n
9
ILE
329
H
GLY
330
n
10
GLY
330
H
MET
331
n
11
MET
331
H
SER
332
n
12
SER
332
H
PRO
333
n
13
PRO
333
H
TRP
334
n
14
TRP
334
H
GLN
335
n
15
GLN
335
H
VAL
336
n
16
VAL
336
H
MET
337
n
17
MET
337
H
LEU
338
n
18
LEU
338
H
PHE
339
n
19
PHE
339
H
ARG
340
n
20
ARG
340
H
LYS
341
n
21
LYS
341
H
SER
342
n
22
SER
342
H
PRO
343
n
23
PRO
343
H
GLN
344
n
24
GLN
344
H
GLU
345
n
25
GLU
345
H
LEU
346
n
26
LEU
346
H
LEU
347
n
27
LEU
347
H
CYS
348
n
28
CYS
348
H
GLY
349
n
29
GLY
349
H
ALA
350
n
30
ALA
350
H
SER
351
n
31
SER
351
H
LEU
352
n
32
LEU
352
H
ILE
353
n
33
ILE
353
H
SER
354
n
34
SER
354
H
ASP
355
n
35
ASP
355
H
ARG
356
n
36
ARG
356
H
TRP
357
n
37
TRP
357
H
VAL
358
n
38
VAL
358
H
LEU
359
n
39
LEU
359
H
THR
360
n
40
THR
360
H
ALA
361
n
41
ALA
361
H
ALA
362
n
42
ALA
362
H
HIS
363
n
43
HIS
363
H
CYS
364
n
44
CYS
364
H
LEU
365
n
45
LEU
365
H
LEU
366
n
46
LEU
366
H
TYR
367
n
47
TYR
367
H
PRO
368
n
48
PRO
368
H
PRO
369
n
49
PRO
369
H
TRP
370
n
50
TRP
370
H
ASP
371
n
51
ASP
371
H
LYS
372
n
52
LYS
372
H
ASN
373
n
53
ASN
373
H
PHE
374
n
54
PHE
374
H
THR
375
n
55
THR
375
H
GLU
376
n
56
GLU
376
H
ASN
377
n
57
ASN
377
H
ASP
378
n
58
ASP
378
H
LEU
379
n
59
LEU
379
H
LEU
380
n
60
LEU
380
H
VAL
381
n
61
VAL
381
H
ARG
382
n
62
ARG
382
H
ILE
383
n
63
ILE
383
H
GLY
384
n
64
GLY
384
H
LYS
385
n
65
LYS
385
H
HIS
386
n
66
HIS
386
H
SER
387
n
67
SER
387
H
ARG
388
n
68
ARG
388
H
THR
389
n
69
THR
389
H
ARG
390
n
70
ARG
390
H
TYR
391
n
71
TYR
391
H
GLU
392
n
72
GLU
392
H
ARG
393
n
73
ARG
393
H
ASN
394
n
74
ASN
394
H
ILE
395
n
75
ILE
395
H
GLU
396
n
76
GLU
396
H
LYS
397
n
77
LYS
397
H
ILE
398
n
78
ILE
398
H
SER
399
n
79
SER
399
H
MET
400
n
80
MET
400
H
LEU
401
n
81
LEU
401
H
GLU
402
n
82
GLU
402
H
LYS
403
n
83
LYS
403
H
ILE
404
n
84
ILE
404
H
TYR
405
n
85
TYR
405
H
ILE
406
n
86
ILE
406
H
HIS
407
n
87
HIS
407
H
PRO
408
n
88
PRO
408
H
ARG
409
n
89
ARG
409
H
TYR
410
n
90
TYR
410
H
ASN
411
n
91
ASN
411
H
TRP
412
n
92
TRP
412
H
ARG
413
n
93
ARG
413
H
GLU
414
n
94
GLU
414
H
ASN
415
n
95
ASN
415
H
LEU
416
n
96
LEU
416
H
ASP
417
n
97
ASP
417
H
ARG
418
n
98
ARG
418
H
ASP
419
n
99
ASP
419
H
ILE
420
n
100
ILE
420
H
ALA
421
n
101
ALA
421
H
LEU
422
n
102
LEU
422
H
MET
423
n
103
MET
423
H
LYS
424
n
104
LYS
424
H
LEU
425
n
105
LEU
425
H
LYS
426
n
106
LYS
426
H
LYS
427
n
107
LYS
427
H
PRO
428
n
108
PRO
428
H
VAL
429
n
109
VAL
429
H
ALA
430
n
110
ALA
430
H
PHE
431
n
111
PHE
431
H
SER
432
n
112
SER
432
H
ASP
433
n
113
ASP
433
H
TYR
434
n
114
TYR
434
H
ILE
435
n
115
ILE
435
H
HIS
436
n
116
HIS
436
H
PRO
437
n
117
PRO
437
H
VAL
438
n
118
VAL
438
H
CYS
439
n
119
CYS
439
H
LEU
440
n
120
LEU
440
H
PRO
441
n
121
PRO
441
H
ASP
442
n
122
ASP
442
H
ARG
443
n
123
ARG
443
H
GLU
444
n
124
GLU
444
H
THR
445
n
125
THR
445
H
ALA
446
n
126
ALA
446
H
ALA
447
n
127
ALA
447
H
SER
448
n
128
SER
448
H
LEU
449
n
129
LEU
449
H
LEU
450
n
130
LEU
450
H
GLN
451
n
131
GLN
451
H
ALA
452
n
132
ALA
452
H
GLY
453
n
133
GLY
453
H
TYR
454
n
134
TYR
454
H
LYS
455
n
135
LYS
455
H
GLY
456
n
136
GLY
456
H
ARG
457
n
137
ARG
457
H
VAL
458
n
138
VAL
458
H
THR
459
n
139
THR
459
H
GLY
460
n
140
GLY
460
H
TRP
461
n
141
TRP
461
H
GLY
462
n
142
GLY
462
H
ASN
463
n
143
ASN
463
H
LEU
464
n
144
LEU
464
H
LYS
465
n
145
LYS
465
H
GLU
466
n
146
GLU
466
H
THR
467
n
147
THR
467
H
n
148
468
H
n
149
469
H
n
150
470
H
n
151
471
H
n
152
472
H
n
153
473
H
n
154
474
H
GLY
475
n
155
GLY
475
H
GLN
476
n
156
GLN
476
H
PRO
477
n
157
PRO
477
H
SER
478
n
158
SER
478
H
VAL
479
n
159
VAL
479
H
LEU
480
n
160
LEU
480
H
GLN
481
n
161
GLN
481
H
VAL
482
n
162
VAL
482
H
VAL
483
n
163
VAL
483
H
ASN
484
n
164
ASN
484
H
LEU
485
n
165
LEU
485
H
PRO
486
n
166
PRO
486
H
ILE
487
n
167
ILE
487
H
VAL
488
n
168
VAL
488
H
GLU
489
n
169
GLU
489
H
ARG
490
n
170
ARG
490
H
PRO
491
n
171
PRO
491
H
VAL
492
n
172
VAL
492
H
CYS
493
n
173
CYS
493
H
LYS
494
n
174
LYS
494
H
ASP
495
n
175
ASP
495
H
SER
496
n
176
SER
496
H
THR
497
n
177
THR
497
H
ARG
498
n
178
ARG
498
H
ILE
499
n
179
ILE
499
H
ARG
500
n
180
ARG
500
H
ILE
501
n
181
ILE
501
H
THR
502
n
182
THR
502
H
ASP
503
n
183
ASP
503
H
ASN
504
n
184
ASN
504
H
MET
505
n
185
MET
505
H
PHE
506
n
186
PHE
506
H
CYS
507
n
187
CYS
507
H
ALA
508
n
188
ALA
508
H
GLY
509
n
189
GLY
509
H
TYR
510
n
190
TYR
510
H
LYS
511
n
191
LYS
511
H
PRO
512
n
192
PRO
512
H
ASP
513
n
193
ASP
513
H
GLU
514
n
194
GLU
514
H
GLY
515
n
195
GLY
515
H
LYS
516
n
196
LYS
516
H
ARG
517
n
197
ARG
517
H
GLY
518
n
198
GLY
518
H
ASP
519
n
199
ASP
519
H
ALA
520
n
200
ALA
520
H
CYS
521
n
201
CYS
521
H
GLU
522
n
202
GLU
522
H
GLY
523
n
203
GLY
523
H
ASP
524
n
204
ASP
524
H
SER
525
n
205
SER
525
H
GLY
526
n
206
GLY
526
H
GLY
527
n
207
GLY
527
H
PRO
528
n
208
PRO
528
H
PHE
529
n
209
PHE
529
H
VAL
530
n
210
VAL
530
H
MET
531
n
211
MET
531
H
LYS
532
n
212
LYS
532
H
SER
533
n
213
SER
533
H
PRO
534
n
214
PRO
534
H
PHE
535
n
215
PHE
535
H
ASN
536
n
216
ASN
536
H
ASN
537
n
217
ASN
537
H
ARG
538
n
218
ARG
538
H
TRP
539
n
219
TRP
539
H
TYR
540
n
220
TYR
540
H
GLN
541
n
221
GLN
541
H
MET
542
n
222
MET
542
H
GLY
543
n
223
GLY
543
H
ILE
544
n
224
ILE
544
H
VAL
545
n
225
VAL
545
H
SER
546
n
226
SER
546
H
TRP
547
n
227
TRP
547
H
GLY
548
n
228
GLY
548
H
GLU
549
n
229
GLU
549
H
GLY
550
n
230
GLY
550
H
CYS
551
n
231
CYS
551
H
ASP
552
n
232
ASP
552
H
ARG
553
n
233
ARG
553
H
ASP
554
n
234
ASP
554
H
GLY
555
n
235
GLY
555
H
LYS
556
n
236
LYS
556
H
TYR
557
n
237
TYR
557
H
GLY
558
n
238
GLY
558
H
PHE
559
n
239
PHE
559
H
TYR
560
n
240
TYR
560
H
THR
561
n
241
THR
561
H
HIS
562
n
242
HIS
562
H
VAL
563
n
243
VAL
563
H
PHE
564
n
244
PHE
564
H
ARG
565
n
245
ARG
565
H
LEU
566
n
246
LEU
566
H
LYS
567
n
247
LYS
567
H
LYS
568
n
248
LYS
568
H
TRP
569
n
249
TRP
569
H
ILE
570
n
250
ILE
570
H
GLN
571
n
251
GLN
571
H
LYS
572
n
252
LYS
572
H
VAL
573
n
253
VAL
573
H
ILE
574
n
254
ILE
574
H
ASP
575
n
255
ASP
575
H
GLN
576
n
256
GLN
576
H
PHE
577
n
257
PHE
577
H
GLY
578
n
258
GLY
578
H
GLU
579
n
259
GLU
579
H
n
1
1
I
n
2
2
I
n
3
3
I
n
4
4
I
n
5
5
I
n
6
6
I
n
7
7
I
n
8
8
I
n
9
9
I
n
10
10
I
n
11
11
I
n
12
12
I
n
13
13
I
n
14
14
I
n
15
15
I
n
16
16
I
n
17
17
I
n
18
18
I
n
19
19
I
n
20
20
I
n
21
21
I
n
22
22
I
n
23
23
I
n
24
24
I
n
25
25
I
n
26
26
I
n
27
27
I
n
28
28
I
n
29
29
I
n
30
30
I
n
31
31
I
n
32
32
I
n
33
33
I
TYR
34
n
34
TYR
34
I
ALA
35
n
35
ALA
35
I
ALA
36
n
36
ALA
36
I
ILE
37
n
37
ILE
37
I
GLU
38
n
38
GLU
38
I
ALA
39
n
39
ALA
39
I
SER
40
n
40
SER
40
I
LEU
41
n
41
LEU
41
I
SER
42
n
42
SER
42
I
GLU
43
n
43
GLU
43
I
THR
44
n
44
THR
44
I
PHE
45
n
45
PHE
45
I
ASN
46
n
46
ASN
46
I
THR
47
n
47
THR
47
I
ALA
48
n
48
ALA
48
I
ALA
49
n
49
ALA
49
I
ASP
50
n
50
ASP
50
I
PRO
51
n
51
PRO
51
I
GLY
52
n
52
GLY
52
I
ARG
53
n
53
ARG
53
I
ARG
54
n
54
ARG
54
I
LEU
55
n
55
LEU
55
I
GLY
56
n
56
GLY
56
I
GLU
57
n
57
GLU
57
I
GLY
58
n
58
GLY
58
I
SER
59
n
59
SER
59
I
LYS
60
n
60
LYS
60
I
PRO
61
n
61
PRO
61
I
author_and_software_defined_assembly
PISA
3
trimeric
5320
-26
13210
H
ARG
553
B
O
ARG
233
1_555
H
NA
602
E
NA
NA
1_555
H
LYS
556
B
O
LYS
236
1_555
92.0
H
ARG
553
B
O
ARG
233
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
701
F
O
HOH
1_555
162.6
H
LYS
556
B
O
LYS
236
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
701
F
O
HOH
1_555
70.6
H
ARG
553
B
O
ARG
233
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
702
F
O
HOH
1_555
89.1
H
LYS
556
B
O
LYS
236
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
702
F
O
HOH
1_555
105.3
H
HOH
701
F
O
HOH
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
702
F
O
HOH
1_555
94.6
H
ARG
553
B
O
ARG
233
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
703
F
O
HOH
1_555
99.5
H
LYS
556
B
O
LYS
236
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
703
F
O
HOH
1_555
168.5
H
HOH
701
F
O
HOH
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
703
F
O
HOH
1_555
97.9
H
HOH
702
F
O
HOH
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
703
F
O
HOH
1_555
75.7
H
ARG
553
B
O
ARG
233
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
704
F
O
HOH
1_555
84.8
H
LYS
556
B
O
LYS
236
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
704
F
O
HOH
1_555
75.3
H
HOH
701
F
O
HOH
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
704
F
O
HOH
1_555
91.4
H
HOH
702
F
O
HOH
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
704
F
O
HOH
1_555
173.9
H
HOH
703
F
O
HOH
1_555
H
NA
602
E
NA
NA
1_555
H
HOH
704
F
O
HOH
1_555
105.0
H
ASN
373
GLYCOSYLATION SITE
B
ASN
53
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
SER
325
B
N
SER
5
H
O
VAL
482
B
O
VAL
162
H
O
VAL
483
B
O
VAL
163
H
N
VAL
458
B
N
VAL
138
H
N
ARG
457
B
N
ARG
137
H
O
VAL
530
B
O
VAL
210
H
N
MET
531
B
N
MET
211
H
O
TYR
540
B
O
TYR
220
H
N
TRP
547
B
N
TRP
227
H
O
PHE
559
B
O
PHE
239
H
O
TYR
560
B
O
TYR
240
H
N
PHE
506
B
N
PHE
186
I
O
ASN
46
C
O
ASN
46
H
N
LEU
346
B
N
LEU
26
H
N
SER
351
B
N
SER
31
H
O
LEU
359
B
O
LEU
39
H
N
VAL
358
B
N
VAL
38
H
O
MET
423
B
O
MET
103
H
O
LYS
424
B
O
LYS
104
H
N
GLU
402
B
N
GLU
82
H
O
LYS
397
B
O
LYS
77
H
N
ILE
383
B
N
ILE
63
H
O
LEU
380
B
O
LEU
60
H
N
PHE
339
B
N
PHE
19
H
N
VAL
336
B
N
VAL
16
H
O
ALA
350
B
O
ALA
30
H
N
TYR
367
B
N
TYR
47
H
O
LYS
372
B
O
LYS
52
1
H
HOH
709
F
HOH
1
I
HOH
102
G
HOH
1
L
THR
285
A
THR
1
1
Y
1
L
PHE
286
A
PHE
2
1
Y
1
L
GLY
287
A
GLY
3
1
Y
1
L
SER
288
A
SER
4
1
Y
1
L
GLY
289
A
GLY
5
1
Y
1
L
GLU
290
A
GLU
6
1
Y
1
L
GLY
319
A
GLY
35
1
Y
1
L
ARG
320
A
ARG
36
1
Y
1
H
TRP
468
B
TRP
148
1
Y
1
H
THR
469
B
THR
149
1
Y
1
H
ALA
470
B
ALA
150
1
Y
1
H
ASN
471
B
ASN
151
1
Y
1
H
VAL
472
B
VAL
152
1
Y
1
H
GLY
473
B
GLY
153
1
Y
1
H
LYS
474
B
LYS
154
1
Y
1
I
ALA
1
C
ALA
1
1
Y
1
I
PRO
2
C
PRO
2
1
Y
1
I
GLN
3
C
GLN
3
1
Y
1
I
TYR
4
C
TYR
4
1
Y
1
I
ALA
5
C
ALA
5
1
Y
1
I
PRO
6
C
PRO
6
1
Y
1
I
GLY
7
C
GLY
7
1
Y
1
I
ASP
8
C
ASP
8
1
Y
1
I
GLU
9
C
GLU
9
1
Y
1
I
PRO
10
C
PRO
10
1
Y
1
I
SER
11
C
SER
11
1
Y
1
I
TYR
12
C
TYR
12
1
Y
1
I
ASP
13
C
ASP
13
1
Y
1
I
GLU
14
C
GLU
14
1
Y
1
I
ASP
15
C
ASP
15
1
Y
1
I
THR
16
C
THR
16
1
Y
1
I
ASP
17
C
ASP
17
1
Y
1
I
ASP
18
C
ASP
18
1
Y
1
I
SER
19
C
SER
19
1
Y
1
I
ASP
20
C
ASP
20
1
Y
1
I
LYS
21
C
LYS
21
1
Y
1
I
LEU
22
C
LEU
22
1
Y
1
I
VAL
23
C
VAL
23
1
Y
1
I
GLU
24
C
GLU
24
1
Y
1
I
ASN
25
C
ASN
25
1
Y
1
I
ASP
26
C
ASP
26
1
Y
1
I
THR
27
C
THR
27
1
Y
1
I
SER
28
C
SER
28
1
Y
1
I
ILE
29
C
ILE
29
1
Y
1
I
THR
30
C
THR
30
1
Y
1
I
ASP
31
C
ASP
31
1
Y
1
I
GLU
32
C
GLU
32
1
Y
1
I
ASP
33
C
ASP
33
1
Y
1
L
CYS
293
-42.33
155.48
1
L
PHE
299
-142.74
-76.97
1
L
SER
303
34.11
73.48
1
H
LYS
341
-63.40
-72.69
1
H
CYS
348
-171.99
-178.14
1
H
TYR
367
-160.46
84.62
1
H
ASN
373
-166.60
90.52
1
H
HIS
386
-128.13
-55.68
1
H
ILE
395
-142.15
-65.20
1
H
ASN
415
-151.31
17.98
1
H
SER
432
-127.77
-169.35
1
H
THR
502
-59.51
173.67
1
H
SER
525
-44.79
151.47
1
H
ASN
537
48.76
14.69
1
H
GLN
576
-76.05
-92.72
1
I
ALA
35
62.07
80.98
1
I
ALA
36
-154.13
54.47
1
I
ILE
37
11.76
98.46
1
I
ALA
39
58.89
14.39
1
I
THR
44
-154.46
79.52
1
I
ALA
48
-71.14
-158.59
181.840
83.5621
28.050
-15.9794
0.0000
0.0000
-15.9794
-0.0000
31.9588
0.2079
0.1766
0.1782
3.196
46.833
911
17855
17852
5.1
99.7200
1.000
0.500
0.8396
0.7300
RANDOM
1
1.350
MOLECULAR REPLACEMENT
22.5000
0.8600
1.1000
PDB ENTRY 3U69
ML
FLAT BULK SOLVENT MODEL
79.7090
0.3580
3.196
46.833
23
2512
15
0
2474
0.011
2556
1.297
3451
0.087
360
0.005
444
16.912
968
0.3389
0.3169
3.3641
141
2380
2521
7
99.0
0.2701
0.2351
3.5749
123
2379
2502
7
100.0
0.2144
0.1781
3.8508
140
2395
2535
7
100.0
0.1932
0.1492
4.2380
135
2420
2555
7
100.0
0.1509
0.1231
4.8507
124
2413
2537
7
100.0
0.1698
0.1516
6.1093
131
2443
2574
7
100.0
0.2270
0.1929
46.8381
117
2511
2628
7
100.0
3.196
46.833
4E06
17855
17855
0
0
0.143
1
9.9
5.1
99.8
0.807
3.196
3.370
1.00
12699
2578
0.807
1
4.9
98.8
0.462
3.370
3.570
1.60
12452
2426
0.462
1
5.1
100.0
0.293
3.570
3.820
2.20
12123
2308
0.293
1
5.3
100.0
0.203
3.820
4.130
3.50
10838
2159
0.203
1
5.0
99.9
0.124
4.130
4.520
6.10
10031
1969
0.124
1
5.1
99.9
0.101
4.520
5.050
7.40
9338
1798
0.101
1
5.2
99.9
0.097
5.050
5.830
7.70
7970
1609
0.097
1
5.0
100.0
0.082
5.830
7.150
9.00
7026
1345
0.082
1
5.2
100.0
0.047
7.150
10.110
14.70
5151
1061
0.047
1
4.9
99.9
0.035
10.110
46.833
18.60
2813
602
0.035
1
4.7
99.1
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2010/01/06
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.3.16
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.7.2_869
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
DNA
data reduction
XDS
Anophelin from the malaria vector inhibits thrombin through a novel reverse-binding mechanism
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
L
THR
308
A
THR
24
HELX_P
L
ASP
318
A
ASP
34
1
1
11
H
PRO
368
B
PRO
48
HELX_P
H
ASP
371
B
ASP
51
5
2
4
H
ASP
442
B
ASP
122
HELX_P
H
LEU
450
B
LEU
130
1
3
9
H
GLU
489
B
GLU
169
HELX_P
H
ASP
495
B
ASP
175
1
4
7
H
LEU
566
B
LEU
246
HELX_P
H
GLN
576
B
GLN
256
1
5
11
I
PRO
51
C
PRO
51
HELX_P
I
SER
59
C
SER
59
5
6
9
disulf
2.050
L
CYS
293
A
SG
CYS
9
1_555
H
CYS
439
B
SG
CYS
119
1_555
disulf
2.040
H
CYS
348
B
SG
CYS
28
1_555
H
CYS
364
B
SG
CYS
44
1_555
disulf
2.028
H
CYS
493
B
SG
CYS
173
1_555
H
CYS
507
B
SG
CYS
187
1_555
disulf
2.059
H
CYS
521
B
SG
CYS
201
1_555
H
CYS
551
B
SG
CYS
231
1_555
covale
1.456
one
N-Glycosylation
H
ASN
373
B
ND2
ASN
53
1_555
H
NAG
601
D
C1
NAG
1_555
metalc
2.540
H
ARG
553
B
O
ARG
233
1_555
H
NA
602
E
NA
NA
1_555
metalc
2.221
H
LYS
556
B
O
LYS
236
1_555
H
NA
602
E
NA
NA
1_555
metalc
2.420
H
NA
602
E
NA
NA
1_555
H
HOH
701
F
O
HOH
1_555
metalc
2.520
H
NA
602
E
NA
NA
1_555
H
HOH
702
F
O
HOH
1_555
metalc
2.405
H
NA
602
E
NA
NA
1_555
H
HOH
703
F
O
HOH
1_555
metalc
2.588
H
NA
602
E
NA
NA
1_555
H
HOH
704
F
O
HOH
1_555
HYDROLASE/HYDROLASE INHIBITOR
HYDROLASE-HYDROLASE INHIBITOR complex
H
SER
342
B
SER
22
1
H
PRO
343
B
PRO
23
-5.35
THRB_HUMAN
UNP
1
328
P00734
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
THRB_HUMAN
UNP
2
364
P00734
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
Q9NJS1_ANOAL
UNP
3
23
Q9NJS1
APQYAPGDEPSYDEDTDDSDKLVENDTSITDEDYAAIEASLSETFNTAADPGRRLGEGSKP
328
363
4E06
285
320
P00734
L
1
1
36
364
622
4E06
321
579
P00734
H
2
1
259
23
83
4E06
1
61
Q9NJS1
I
3
1
61
7
8
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
SER
325
B
SER
5
H
ASP
326
B
ASP
6
H
GLN
481
B
GLN
161
H
PRO
486
B
PRO
166
H
LYS
455
B
LYS
135
H
GLY
460
B
GLY
140
H
PRO
528
B
PRO
208
H
LYS
532
B
LYS
212
H
TRP
539
B
TRP
219
H
GLY
548
B
GLY
228
H
GLY
558
B
GLY
238
H
HIS
562
B
HIS
242
H
MET
505
B
MET
185
H
ALA
508
B
ALA
188
I
ASN
46
C
ASN
46
I
THR
47
C
THR
47
H
GLU
345
B
GLU
25
H
LEU
352
B
LEU
32
H
TRP
357
B
TRP
37
H
THR
360
B
THR
40
H
ALA
421
B
ALA
101
H
LEU
425
B
LEU
105
H
LYS
397
B
LYS
77
H
ILE
406
B
ILE
86
H
LEU
379
B
LEU
59
H
ILE
383
B
ILE
63
H
GLN
335
B
GLN
15
H
ARG
340
B
ARG
20
H
GLU
345
B
GLU
25
H
LEU
352
B
LEU
32
H
LEU
366
B
LEU
46
H
TYR
367
B
TYR
47
H
LYS
372
B
LYS
52
H
ASN
373
B
ASN
53
155
H 3 2