0.032884
0.000000
0.000683
0.000000
0.039324
0.000000
0.000000
0.000000
0.019041
0.00000
0.00000
0.00000
Zhao, M.
Liu, C.
Sawaya, M.R.
Eisenberg, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
91.19
90.00
30.410
25.430
52.530
C9 H10 Br N O2
244.085
n
4-BROMO-L-PHENYLALANINE
P-BROMO-L-PHENYLALANINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C10 H11 N3 O5
253.211
{[3-(hydrazinocarbonyl)-4-methoxyphenyl]amino}(oxo)acetic acid
peptide-like
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H14 O2
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
non-polymer
C5 H12 N2 O2
132.161
n
L-ornithine
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
Y
2
N
C
Y
3
N
C
N
4
N
BR
Y
5
N
C
Y
6
N
C
Y
7
N
C
N
8
N
C
N
9
S
C
N
10
N
N
N
11
N
C
N
12
N
O
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
N
N
25
S
C
N
26
N
C
N
27
N
O
N
28
N
C
N
29
N
C
N
30
N
C
N
31
N
O
N
32
N
N
N
33
N
O
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
N
N
45
S
C
N
46
N
C
N
47
N
O
N
48
N
C
N
49
N
C
N
50
N
C
N
51
N
O
N
52
N
O
N
53
N
O
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
N
N
64
N
N
N
65
N
C
N
66
N
O
Y
67
N
C
Y
68
N
C
Y
69
N
C
N
70
N
C
N
71
N
O
Y
72
N
C
Y
73
N
C
Y
74
N
C
N
75
N
N
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
O
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
O
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
S
C
N
100
N
C
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
N
N
126
N
O
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
S
C
N
148
N
O
N
149
N
C
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
N
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
N
N
170
N
C
N
171
N
O
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
Y
190
N
C
Y
191
N
C
Y
192
N
C
Y
193
N
C
Y
194
N
C
Y
195
N
C
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
P
N
209
N
O
N
210
N
O
N
211
N
O
N
212
N
O
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
N
C
N
218
N
O
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
Y
232
N
C
Y
233
N
C
Y
234
N
C
Y
235
N
C
Y
236
N
C
Y
237
N
C
N
238
N
O
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
Y
1
N
doub
Y
2
N
sing
N
3
N
sing
Y
4
N
sing
N
5
N
sing
N
6
N
sing
Y
7
N
doub
Y
8
N
sing
N
9
N
sing
Y
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
doub
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
doub
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
doub
Y
66
N
sing
Y
67
N
doub
Y
68
N
sing
N
69
N
sing
Y
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
Y
77
N
sing
N
78
N
sing
Y
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
Y
189
N
doub
Y
190
N
sing
Y
191
N
sing
N
192
N
sing
Y
193
N
doub
N
194
N
sing
Y
195
N
doub
N
196
N
sing
Y
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
Y
229
N
doub
Y
230
N
sing
Y
231
N
sing
N
232
N
sing
Y
233
N
doub
N
234
N
sing
Y
235
N
doub
N
236
N
sing
Y
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
109
20913
20918
10.1073/pnas.1218792109
23213214
Out-of-register beta-sheets suggest a pathway to toxic amyloid aggregates.
2012
10.2210/pdb4e0o/pdb
pdb_00004e0o
100
1
CCD
2011-03-05
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.97949
1.0
24-ID-C
APS
0.97949
SYNCHROTRON
APS BEAMLINE 24-ID-C
1932.019
Cyclic pseudo-peptide SVQIVYK(ORN)EF(HAO)(4BF)K(ORN)
4
syn
polymer
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
7
syn
non-polymer
94.971
PHOSPHATE ION
3
syn
non-polymer
18.015
water
50
nat
water
no
yes
(ORN)SVQIVYK(ORN)EF(HAO)(4BF)K
ASVQIVYKAEFXYK
A,B,C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
2.63
53.19
VAPOR DIFFUSION, HANGING DROP
6.2
0.1M Na/K phosphate buffer pH 6.2, 35% (v/v) 2-methyl-2,4-pentanediol, vapor diffusion, hanging drop, temperature 290K
290
pdbx_distant_solvent_atoms
pdbx_struct_assembly
pdbx_struct_assembly_gen
pdbx_struct_assembly_prop
pdbx_validate_polymer_linkage
struct_conn
atom_site
atom_site_anisotrop
chem_comp_atom
chem_comp_bond
database_2
pdbx_validate_rmsd_angle
struct_conn
struct_site
repository
Initial release
Database references
Advisory
Derived calculations
Atomic model
Data collection
Database references
Derived calculations
1
0
2012-12-19
1
1
2013-06-19
1
2
2020-01-29
2
0
2023-11-15
_struct_conn.pdbx_leaving_atom_flag
_atom_site.auth_atom_id
_atom_site.label_atom_id
_atom_site_anisotrop.pdbx_auth_atom_id
_atom_site_anisotrop.pdbx_label_atom_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-03-04
REL
REL
1
B
O
HOH
206
7.03
1
B
O
HOH
215
7.11
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL
PO4
PHOSPHATE ION
HOH
water
Synthetic molecule
sample
MPD
1
2
MPD
MPD
101
A
MPD
1
2
MPD
MPD
102
A
PO4
3
3
PO4
PO4
101
B
MPD
1
2
MPD
MPD
102
B
MPD
1
2
MPD
MPD
103
B
MPD
1
2
MPD
MPD
101
C
PO4
1
3
PO4
PO4
101
D
PO4
2
3
PO4
PO4
102
D
MPD
1
2
MPD
MPD
103
D
MPD
1
2
MPD
MPD
104
D
HOH
3
4
HOH
HOH
201
A
HOH
4
4
HOH
HOH
202
A
HOH
6
4
HOH
HOH
203
A
HOH
7
4
HOH
HOH
204
A
HOH
11
4
HOH
HOH
205
A
HOH
17
4
HOH
HOH
206
A
HOH
19
4
HOH
HOH
207
A
HOH
33
4
HOH
HOH
208
A
HOH
37
4
HOH
HOH
209
A
HOH
42
4
HOH
HOH
210
A
HOH
44
4
HOH
HOH
211
A
HOH
53
4
HOH
HOH
212
A
HOH
2
4
HOH
HOH
201
B
HOH
8
4
HOH
HOH
202
B
HOH
10
4
HOH
HOH
203
B
HOH
13
4
HOH
HOH
204
B
HOH
15
4
HOH
HOH
205
B
HOH
20
4
HOH
HOH
206
B
HOH
23
4
HOH
HOH
207
B
HOH
25
4
HOH
HOH
208
B
HOH
28
4
HOH
HOH
209
B
HOH
29
4
HOH
HOH
210
B
HOH
30
4
HOH
HOH
211
B
HOH
34
4
HOH
HOH
212
B
HOH
40
4
HOH
HOH
213
B
HOH
46
4
HOH
HOH
214
B
HOH
47
4
HOH
HOH
215
B
HOH
49
4
HOH
HOH
216
B
HOH
1
4
HOH
HOH
201
C
HOH
9
4
HOH
HOH
202
C
HOH
16
4
HOH
HOH
203
C
HOH
18
4
HOH
HOH
204
C
HOH
22
4
HOH
HOH
205
C
HOH
26
4
HOH
HOH
206
C
HOH
32
4
HOH
HOH
207
C
HOH
41
4
HOH
HOH
208
C
HOH
45
4
HOH
HOH
209
C
HOH
5
4
HOH
HOH
201
D
HOH
12
4
HOH
HOH
202
D
HOH
14
4
HOH
HOH
203
D
HOH
27
4
HOH
HOH
204
D
HOH
35
4
HOH
HOH
205
D
HOH
36
4
HOH
HOH
206
D
HOH
38
4
HOH
HOH
207
D
HOH
39
4
HOH
HOH
208
D
HOH
43
4
HOH
HOH
209
D
HOH
48
4
HOH
HOH
210
D
HOH
50
4
HOH
HOH
211
D
HOH
51
4
HOH
HOH
212
D
HOH
52
4
HOH
HOH
213
D
2.000
2.000
18.370
18.370
Phaser MODE: MR_AUTO
ORN
0
n
1
ORN
0
A
SER
1
n
2
SER
1
A
VAL
2
n
3
VAL
2
A
GLN
3
n
4
GLN
3
A
ILE
4
n
5
ILE
4
A
VAL
5
n
6
VAL
5
A
TYR
6
n
7
TYR
6
A
LYS
7
n
8
LYS
7
A
ORN
8
n
9
ORN
8
A
GLU
9
n
10
GLU
9
A
PHE
10
n
11
PHE
10
A
HAO
11
n
12
HAO
11
A
4BF
12
n
13
4BF
12
A
LYS
13
n
14
LYS
13
A
ORN
0
n
1
ORN
0
B
SER
1
n
2
SER
1
B
VAL
2
n
3
VAL
2
B
GLN
3
n
4
GLN
3
B
ILE
4
n
5
ILE
4
B
VAL
5
n
6
VAL
5
B
TYR
6
n
7
TYR
6
B
LYS
7
n
8
LYS
7
B
ORN
8
n
9
ORN
8
B
GLU
9
n
10
GLU
9
B
PHE
10
n
11
PHE
10
B
HAO
11
n
12
HAO
11
B
4BF
12
n
13
4BF
12
B
LYS
13
n
14
LYS
13
B
ORN
0
n
1
ORN
0
C
SER
1
n
2
SER
1
C
VAL
2
n
3
VAL
2
C
GLN
3
n
4
GLN
3
C
ILE
4
n
5
ILE
4
C
VAL
5
n
6
VAL
5
C
TYR
6
n
7
TYR
6
C
LYS
7
n
8
LYS
7
C
ORN
8
n
9
ORN
8
C
GLU
9
n
10
GLU
9
C
PHE
10
n
11
PHE
10
C
HAO
11
n
12
HAO
11
C
4BF
12
n
13
4BF
12
C
LYS
13
n
14
LYS
13
C
ORN
0
n
1
ORN
0
D
SER
1
n
2
SER
1
D
VAL
2
n
3
VAL
2
D
GLN
3
n
4
GLN
3
D
ILE
4
n
5
ILE
4
D
VAL
5
n
6
VAL
5
D
TYR
6
n
7
TYR
6
D
LYS
7
n
8
LYS
7
D
ORN
8
n
9
ORN
8
D
GLU
9
n
10
GLU
9
D
PHE
10
n
11
PHE
10
D
HAO
11
n
12
HAO
11
D
4BF
12
n
13
4BF
12
D
LYS
13
n
14
LYS
13
D
1.8492
0.1395
-1.4144
4.1704
1.2660
1.9376
-0.0194
0.1181
-0.0020
-0.0831
-0.1537
0.3266
0.1580
-0.1659
0.1731
-0.0279
0.0009
-0.0064
-0.0900
0.0008
0.0043
refined
10.4438
-1.9065
23.2075
X-RAY DIFFRACTION
2.3895
-1.6697
-2.7145
5.1972
2.8130
3.7185
0.1848
0.2965
0.1487
-0.3851
-0.1897
0.0221
-0.1307
-0.2034
0.0049
-0.1507
0.0157
-0.0114
-0.1791
-0.0059
-0.0501
refined
11.8810
8.2013
21.8595
X-RAY DIFFRACTION
0.1518
0.0014
0.7420
4.3502
-1.4501
2.5646
0.1262
-0.0309
0.0197
0.2342
-0.2080
-0.4126
-0.2411
0.3486
0.0818
0.0682
0.0020
-0.0025
-0.0538
0.0367
0.0153
refined
5.2427
9.6723
-0.8092
X-RAY DIFFRACTION
-0.0125
0.1943
0.2650
7.4537
1.0181
3.3683
0.2177
0.0841
-0.0601
-0.0967
-0.1541
-0.5075
0.1527
0.2822
-0.0636
0.0135
0.0035
-0.0343
-0.0877
0.0242
0.0060
refined
4.4004
-0.3648
-2.9006
X-RAY DIFFRACTION
A
0
A
13
X-RAY DIFFRACTION
1
B
0
B
13
X-RAY DIFFRACTION
2
C
0
C
13
X-RAY DIFFRACTION
3
D
0
D
13
X-RAY DIFFRACTION
4
software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
2
dimeric
1760
-39
3210
1610
-34
3290
A
ORN
0
L-ORNITHINE
A
ORN
1
ALA
A
ORN
8
L-ORNITHINE
A
ORN
9
ALA
A
4BF
12
4-BROMO-L-PHENYLALANINE
A
4BF
13
TYR
B
ORN
0
L-ORNITHINE
B
ORN
1
ALA
B
ORN
8
L-ORNITHINE
B
ORN
9
ALA
B
4BF
12
4-BROMO-L-PHENYLALANINE
B
4BF
13
TYR
C
ORN
0
L-ORNITHINE
C
ORN
1
ALA
C
ORN
8
L-ORNITHINE
C
ORN
9
ALA
C
4BF
12
4-BROMO-L-PHENYLALANINE
C
4BF
13
TYR
D
ORN
0
L-ORNITHINE
D
ORN
1
ALA
D
ORN
8
L-ORNITHINE
D
ORN
9
ALA
D
4BF
12
4-BROMO-L-PHENYLALANINE
D
4BF
13
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
4
A
N
ILE
5
B
O
TYR
6
B
O
TYR
7
C
N
TYR
6
C
N
TYR
7
D
O
ILE
4
D
O
ILE
5
1
A
CG
LYS
13
A
CG
LYS
14
1
Y
1
A
CD
LYS
13
A
CD
LYS
14
1
Y
1
A
CE
LYS
13
A
CE
LYS
14
1
Y
1
A
NZ
LYS
13
A
NZ
LYS
14
1
Y
1
D
CG
LYS
13
D
CG
LYS
14
1
Y
1
D
CD
LYS
13
D
CD
LYS
14
1
Y
1
D
CE
LYS
13
D
CE
LYS
14
1
Y
1
D
NZ
LYS
13
D
NZ
LYS
14
1
Y
1
B
4BF
12
-23.38
A
1
B
4BF
12
-25.31
B
1
C
ORN
8
-11.13
1
D
ORN
8
12.32
1
11.59
1.60
122.70
134.29
A
A
A
O
C
N
ORN
ORN
SER
0
0
1
Y
1
26.28
2.20
117.20
143.48
A
A
A
CA
C
N
HAO
HAO
4BF
11
11
12
Y
1
24.46
2.20
117.20
141.66
B
B
B
CA
C
N
HAO
HAO
4BF
11
11
12
Y
1
-12.58
1.60
122.70
110.12
B
B
B
O
C
N
4BF
4BF
LYS
12
12
13
Y
1
31.30
2.20
117.20
148.50
C
C
C
CA
C
N
HAO
HAO
4BF
11
11
12
Y
1
-14.75
2.20
117.20
102.45
D
D
D
CA
C
N
ORN
ORN
GLU
8
8
9
Y
1
30.60
2.20
117.20
147.80
D
D
D
CA
C
N
HAO
HAO
4BF
11
11
12
Y
1
A
A
C
N
ORN
SER
0
1
0.140
0.023
1.336
1.476
Y
1
D
D
C
N
ORN
SER
0
1
0.180
0.023
1.336
1.516
Y
30.34
1.9989
0.0000
-0.3510
-4.4835
0.0000
2.4846
0.9405
0.9206
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS; U VALUES: RESIDUAL ONLY
0.2294
0.1818
0.1842
1.82
18.37
369
7365
5.01
100.0000
1.000
0.500
5.9890
0.0860
0.1368
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.1370
0.1430
0.8000
0.8000
1.4000
MAXIMUM LIKELIHOOD
MASK
0.196
1.82
18.37
50
641
71
0
520
0.010
646
HARMONIC
2.00
1.38
869
HARMONIC
2.00
129
SINUSOIDAL
2.00
29
HARMONIC
2.00
97
HARMONIC
5.00
430
HARMONIC
20.00
0
SEMIHARMONIC
5.00
0.2168
0.1687
0.1712
2.04
103
1945
2048
5
5.03
21.25
1.8200
18.3700
4E0O
-3.000
0.056
1
10.330
96.500
0.411
1.850
1.900
2.530
1
96.200
0.289
1.900
1.950
3.470
1
95.300
0.228
1.950
2.010
4.040
1
95.900
0.179
2.010
2.070
5.270
1
97.400
0.154
2.070
2.140
6.450
1
96.300
0.115
2.140
2.210
7.170
1
97.300
0.125
2.210
2.290
7.860
1
97.200
0.114
2.290
2.390
7.880
1
96.900
0.083
2.390
2.490
9.810
1
96.300
0.076
2.490
2.620
10.010
1
97.800
0.067
2.620
2.760
12.200
1
96.600
0.053
2.760
2.930
13.570
1
97.800
0.047
2.930
3.130
15.880
1
96.500
0.042
3.130
3.380
17.660
1
96.100
0.036
3.380
3.700
20.110
1
94.800
0.033
3.700
4.140
20.680
1
96.200
0.030
4.140
4.780
22.810
1
96.200
0.029
4.780
5.850
22.960
1
97.000
0.026
5.850
8.270
21.660
1
96.500
0.024
8.270
23.540
1
88.300
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Wed Jun 24 14:00:05 2009
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.1.4
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
refinement
BUSTER
2.8.0
SVQIVYK segment from human Tau (305-311) displayed on 54-membered macrocycle scaffold (form III)
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
2
N
N
2
N
N
4
N
N
4
N
N
4
N
N
4
N
N
covale
1.476
both
A
ORN
0
A
C
ORN
1
1_555
A
SER
1
A
N
SER
2
1_555
covale
1.370
both
A
ORN
0
A
NE
ORN
1
1_555
A
LYS
13
A
C
LYS
14
1_555
covale
1.387
both
A
LYS
7
A
C
LYS
8
1_555
A
ORN
8
A
NE
ORN
9
1_555
covale
1.355
both
A
ORN
8
A
C
ORN
9
1_555
A
GLU
9
A
N
GLU
10
1_555
covale
1.379
both
A
PHE
10
A
C
PHE
11
1_555
A
HAO
11
A
N
HAO
12
1_555
covale
1.358
both
A
HAO
11
A
C
HAO
12
1_555
A
4BF
12
A
N
4BF
13
1_555
covale
1.338
both
A
4BF
12
A
C
4BF
13
1_555
A
LYS
13
A
N
LYS
14
1_555
covale
1.449
both
B
ORN
0
B
C
ORN
1
1_555
B
SER
1
B
N
SER
2
1_555
covale
1.411
both
B
ORN
0
B
NE
ORN
1
1_555
B
LYS
13
B
C
LYS
14
1_555
covale
1.370
both
B
LYS
7
B
C
LYS
8
1_555
B
ORN
8
B
NE
ORN
9
1_555
covale
1.335
both
B
ORN
8
B
C
ORN
9
1_555
B
GLU
9
B
N
GLU
10
1_555
covale
1.333
both
B
PHE
10
B
C
PHE
11
1_555
B
HAO
11
B
N
HAO
12
1_555
covale
1.303
both
B
HAO
11
B
C
HAO
12
1_555
B
4BF
12
B
N
4BF
13
1_555
covale
1.354
both
B
4BF
12
B
C
4BF
13
1_555
B
LYS
13
B
N
LYS
14
1_555
covale
1.451
both
C
ORN
0
C
C
ORN
1
1_555
C
SER
1
C
N
SER
2
1_555
covale
1.319
both
C
ORN
0
C
NE
ORN
1
1_555
C
LYS
13
C
C
LYS
14
1_555
covale
1.454
both
C
LYS
7
C
C
LYS
8
1_555
C
ORN
8
C
NE
ORN
9
1_555
covale
1.346
both
C
ORN
8
C
C
ORN
9
1_555
C
GLU
9
C
N
GLU
10
1_555
covale
1.347
both
C
PHE
10
C
C
PHE
11
1_555
C
HAO
11
C
N
HAO
12
1_555
covale
1.236
both
C
HAO
11
C
C
HAO
12
1_555
C
4BF
12
C
N
4BF
13
1_555
covale
1.357
both
C
4BF
12
C
C
4BF
13
1_555
C
LYS
13
C
N
LYS
14
1_555
covale
1.516
both
D
ORN
0
D
C
ORN
1
1_555
D
SER
1
D
N
SER
2
1_555
covale
1.348
both
D
ORN
0
D
NE
ORN
1
1_555
D
LYS
13
D
C
LYS
14
1_555
covale
1.340
both
D
LYS
7
D
C
LYS
8
1_555
D
ORN
8
D
NE
ORN
9
1_555
covale
1.403
both
D
ORN
8
D
C
ORN
9
1_555
D
GLU
9
D
N
GLU
10
1_555
covale
1.329
both
D
PHE
10
D
C
PHE
11
1_555
D
HAO
11
D
N
HAO
12
1_555
covale
1.290
both
D
HAO
11
D
C
HAO
12
1_555
D
4BF
12
D
N
4BF
13
1_555
covale
1.348
both
D
4BF
12
D
C
4BF
13
1_555
D
LYS
13
D
N
LYS
14
1_555
PROTEIN FIBRIL
amyloid, out-of-register, fiber-forming, macrocycle, PROTEIN FIBRIL
4E0O
PDB
1
1
4E0O
(ORN)SVQIVYK(ORN)EF(HAO)(4BF)K
0
13
4E0O
0
13
4E0O
A
1
1
14
0
13
4E0O
0
13
4E0O
B
1
1
14
0
13
4E0O
0
13
4E0O
C
1
1
14
0
13
4E0O
0
13
4E0O
D
1
1
14
2
2
anti-parallel
anti-parallel
A
ILE
4
A
ILE
5
A
TYR
6
A
TYR
7
B
ILE
4
B
ILE
5
B
TYR
6
B
TYR
7
C
ILE
4
C
ILE
5
C
TYR
6
C
TYR
7
D
ILE
4
D
ILE
5
D
TYR
6
D
TYR
7
BINDING SITE FOR RESIDUE MPD A 101
A
MPD
101
Software
4
BINDING SITE FOR RESIDUE MPD A 102
A
MPD
102
Software
5
BINDING SITE FOR RESIDUE PO4 B 101
B
PO4
101
Software
6
BINDING SITE FOR RESIDUE MPD B 102
B
MPD
102
Software
5
BINDING SITE FOR RESIDUE MPD B 103
B
MPD
103
Software
3
BINDING SITE FOR RESIDUE MPD C 101
C
MPD
101
Software
5
BINDING SITE FOR RESIDUE PO4 D 101
D
PO4
101
Software
6
BINDING SITE FOR RESIDUE PO4 D 102
D
PO4
102
Software
6
BINDING SITE FOR RESIDUE MPD D 103
D
MPD
103
Software
5
BINDING SITE FOR RESIDUE MPD D 104
D
MPD
104
Software
4
A
VAL
5
A
VAL
6
4
1_555
A
GLU
9
A
GLU
10
4
1_555
A
PHE
10
A
PHE
11
4
1_555
A
HAO
11
A
HAO
12
4
1_555
A
VAL
2
A
VAL
3
5
1_555
A
HAO
11
A
HAO
12
5
1_555
A
4BF
12
A
4BF
13
5
1_555
B
HAO
11
B
HAO
12
5
1_545
B
4BF
12
B
4BF
13
5
1_545
B
TYR
6
B
TYR
7
6
1_555
B
ORN
8
B
ORN
9
6
1_555
B
HOH
203
P
HOH
6
1_555
B
HOH
209
P
HOH
6
1_555
B
HOH
212
P
HOH
6
1_555
B
HOH
213
P
HOH
6
1_555
B
VAL
5
B
VAL
6
5
1_555
B
GLU
9
B
GLU
10
5
1_555
B
PHE
10
B
PHE
11
5
1_555
B
HAO
11
B
HAO
12
5
1_555
B
HOH
216
P
HOH
5
1_555
B
GLN
3
B
GLN
4
3
1_555
B
VAL
5
B
VAL
6
3
1_555
B
HAO
11
B
HAO
12
3
1_555
C
GLN
3
C
GLN
4
5
1_555
C
VAL
5
C
VAL
6
5
1_555
C
HAO
11
C
HAO
12
5
1_555
C
4BF
12
C
4BF
13
5
1_555
D
4BF
12
D
4BF
13
5
1_565
D
TYR
6
D
TYR
7
6
1_555
D
ORN
8
D
ORN
9
6
1_555
D
PO4
102
L
PO4
6
1_555
D
HOH
207
R
HOH
6
1_555
D
HOH
209
R
HOH
6
1_555
D
HOH
210
R
HOH
6
1_555
D
ORN
8
D
ORN
9
6
1_555
D
PO4
101
K
PO4
6
1_555
D
HOH
201
R
HOH
6
1_555
D
HOH
208
R
HOH
6
1_555
D
HOH
211
R
HOH
6
1_555
D
HOH
212
R
HOH
6
1_555
C
VAL
2
C
VAL
3
5
1_545
C
HAO
11
C
HAO
12
5
1_545
C
4BF
12
C
4BF
13
5
1_545
D
HAO
11
D
HAO
12
5
1_555
D
4BF
12
D
4BF
13
5
1_555
D
VAL
5
D
VAL
6
4
1_555
D
GLU
9
D
GLU
10
4
1_555
D
PHE
10
D
PHE
11
4
1_555
D
HAO
11
D
HAO
12
4
1_555
4
P 1 21 1