0.032884 0.000000 0.000683 0.000000 0.039324 0.000000 0.000000 0.000000 0.019041 0.00000 0.00000 0.00000 Zhao, M. Liu, C. Sawaya, M.R. Eisenberg, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 91.19 90.00 30.410 25.430 52.530 C9 H10 Br N O2 244.085 n 4-BROMO-L-PHENYLALANINE P-BROMO-L-PHENYLALANINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C10 H11 N3 O5 253.211 {[3-(hydrazinocarbonyl)-4-methoxyphenyl]amino}(oxo)acetic acid peptide-like H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H14 O2 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL non-polymer C5 H12 N2 O2 132.161 n L-ornithine L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Y 1 N C Y 2 N C Y 3 N C N 4 N BR Y 5 N C Y 6 N C Y 7 N C N 8 N C N 9 S C N 10 N N N 11 N C N 12 N O N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N N N 25 S C N 26 N C N 27 N O N 28 N C N 29 N C N 30 N C N 31 N O N 32 N N N 33 N O N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N N N 45 S C N 46 N C N 47 N O N 48 N C N 49 N C N 50 N C N 51 N O N 52 N O N 53 N O N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N N N 64 N N N 65 N C N 66 N O Y 67 N C Y 68 N C Y 69 N C N 70 N C N 71 N O Y 72 N C Y 73 N C Y 74 N C N 75 N N N 76 N C N 77 N O N 78 N C N 79 N O N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N H N 90 N H N 91 N H N 92 N O N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 S C N 100 N C N 101 N C N 102 N C N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N N N 118 S C N 119 N C N 120 N O N 121 N C N 122 N C N 123 N C N 124 N C N 125 N N N 126 N O N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N C N 143 N C N 144 N O N 145 N C N 146 N C N 147 S C N 148 N O N 149 N C N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N N N 165 S C N 166 N C N 167 N C N 168 N C N 169 N N N 170 N C N 171 N O N 172 N O N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N N N 186 S C N 187 N C N 188 N O N 189 N C Y 190 N C Y 191 N C Y 192 N C Y 193 N C Y 194 N C Y 195 N C N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N P N 209 N O N 210 N O N 211 N O N 212 N O N 213 N N N 214 S C N 215 N C N 216 N O N 217 N C N 218 N O N 219 N O N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C Y 232 N C Y 233 N C Y 234 N C Y 235 N C Y 236 N C Y 237 N C N 238 N O N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H Y 1 N doub Y 2 N sing N 3 N sing Y 4 N sing N 5 N sing N 6 N sing Y 7 N doub Y 8 N sing N 9 N sing Y 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N doub N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N doub N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N doub Y 66 N sing Y 67 N doub Y 68 N sing N 69 N sing Y 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing Y 77 N sing N 78 N sing Y 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing Y 189 N doub Y 190 N sing Y 191 N sing N 192 N sing Y 193 N doub N 194 N sing Y 195 N doub N 196 N sing Y 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing Y 229 N doub Y 230 N sing Y 231 N sing N 232 N sing Y 233 N doub N 234 N sing Y 235 N doub N 236 N sing Y 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 109 20913 20918 10.1073/pnas.1218792109 23213214 Out-of-register beta-sheets suggest a pathway to toxic amyloid aggregates. 2012 10.2210/pdb4e0o/pdb pdb_00004e0o 100 1 CCD 2011-03-05 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 0.97949 1.0 24-ID-C APS 0.97949 SYNCHROTRON APS BEAMLINE 24-ID-C 1932.019 Cyclic pseudo-peptide SVQIVYK(ORN)EF(HAO)(4BF)K(ORN) 4 syn polymer 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL 7 syn non-polymer 94.971 PHOSPHATE ION 3 syn non-polymer 18.015 water 50 nat water no yes (ORN)SVQIVYK(ORN)EF(HAO)(4BF)K ASVQIVYKAEFXYK A,B,C,D polypeptide(L) n n n n n n n n n n n n n n 1 2.63 53.19 VAPOR DIFFUSION, HANGING DROP 6.2 0.1M Na/K phosphate buffer pH 6.2, 35% (v/v) 2-methyl-2,4-pentanediol, vapor diffusion, hanging drop, temperature 290K 290 pdbx_distant_solvent_atoms pdbx_struct_assembly pdbx_struct_assembly_gen pdbx_struct_assembly_prop pdbx_validate_polymer_linkage struct_conn atom_site atom_site_anisotrop chem_comp_atom chem_comp_bond database_2 pdbx_validate_rmsd_angle struct_conn struct_site repository Initial release Database references Advisory Derived calculations Atomic model Data collection Database references Derived calculations 1 0 2012-12-19 1 1 2013-06-19 1 2 2020-01-29 2 0 2023-11-15 _struct_conn.pdbx_leaving_atom_flag _atom_site.auth_atom_id _atom_site.label_atom_id _atom_site_anisotrop.pdbx_auth_atom_id _atom_site_anisotrop.pdbx_label_atom_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-03-04 REL REL 1 B O HOH 206 7.03 1 B O HOH 215 7.11 MPD (4S)-2-METHYL-2,4-PENTANEDIOL PO4 PHOSPHATE ION HOH water Synthetic molecule sample MPD 1 2 MPD MPD 101 A MPD 1 2 MPD MPD 102 A PO4 3 3 PO4 PO4 101 B MPD 1 2 MPD MPD 102 B MPD 1 2 MPD MPD 103 B MPD 1 2 MPD MPD 101 C PO4 1 3 PO4 PO4 101 D PO4 2 3 PO4 PO4 102 D MPD 1 2 MPD MPD 103 D MPD 1 2 MPD MPD 104 D HOH 3 4 HOH HOH 201 A HOH 4 4 HOH HOH 202 A HOH 6 4 HOH HOH 203 A HOH 7 4 HOH HOH 204 A HOH 11 4 HOH HOH 205 A HOH 17 4 HOH HOH 206 A HOH 19 4 HOH HOH 207 A HOH 33 4 HOH HOH 208 A HOH 37 4 HOH HOH 209 A HOH 42 4 HOH HOH 210 A HOH 44 4 HOH HOH 211 A HOH 53 4 HOH HOH 212 A HOH 2 4 HOH HOH 201 B HOH 8 4 HOH HOH 202 B HOH 10 4 HOH HOH 203 B HOH 13 4 HOH HOH 204 B HOH 15 4 HOH HOH 205 B HOH 20 4 HOH HOH 206 B HOH 23 4 HOH HOH 207 B HOH 25 4 HOH HOH 208 B HOH 28 4 HOH HOH 209 B HOH 29 4 HOH HOH 210 B HOH 30 4 HOH HOH 211 B HOH 34 4 HOH HOH 212 B HOH 40 4 HOH HOH 213 B HOH 46 4 HOH HOH 214 B HOH 47 4 HOH HOH 215 B HOH 49 4 HOH HOH 216 B HOH 1 4 HOH HOH 201 C HOH 9 4 HOH HOH 202 C HOH 16 4 HOH HOH 203 C HOH 18 4 HOH HOH 204 C HOH 22 4 HOH HOH 205 C HOH 26 4 HOH HOH 206 C HOH 32 4 HOH HOH 207 C HOH 41 4 HOH HOH 208 C HOH 45 4 HOH HOH 209 C HOH 5 4 HOH HOH 201 D HOH 12 4 HOH HOH 202 D HOH 14 4 HOH HOH 203 D HOH 27 4 HOH HOH 204 D HOH 35 4 HOH HOH 205 D HOH 36 4 HOH HOH 206 D HOH 38 4 HOH HOH 207 D HOH 39 4 HOH HOH 208 D HOH 43 4 HOH HOH 209 D HOH 48 4 HOH HOH 210 D HOH 50 4 HOH HOH 211 D HOH 51 4 HOH HOH 212 D HOH 52 4 HOH HOH 213 D 2.000 2.000 18.370 18.370 Phaser MODE: MR_AUTO ORN 0 n 1 ORN 0 A SER 1 n 2 SER 1 A VAL 2 n 3 VAL 2 A GLN 3 n 4 GLN 3 A ILE 4 n 5 ILE 4 A VAL 5 n 6 VAL 5 A TYR 6 n 7 TYR 6 A LYS 7 n 8 LYS 7 A ORN 8 n 9 ORN 8 A GLU 9 n 10 GLU 9 A PHE 10 n 11 PHE 10 A HAO 11 n 12 HAO 11 A 4BF 12 n 13 4BF 12 A LYS 13 n 14 LYS 13 A ORN 0 n 1 ORN 0 B SER 1 n 2 SER 1 B VAL 2 n 3 VAL 2 B GLN 3 n 4 GLN 3 B ILE 4 n 5 ILE 4 B VAL 5 n 6 VAL 5 B TYR 6 n 7 TYR 6 B LYS 7 n 8 LYS 7 B ORN 8 n 9 ORN 8 B GLU 9 n 10 GLU 9 B PHE 10 n 11 PHE 10 B HAO 11 n 12 HAO 11 B 4BF 12 n 13 4BF 12 B LYS 13 n 14 LYS 13 B ORN 0 n 1 ORN 0 C SER 1 n 2 SER 1 C VAL 2 n 3 VAL 2 C GLN 3 n 4 GLN 3 C ILE 4 n 5 ILE 4 C VAL 5 n 6 VAL 5 C TYR 6 n 7 TYR 6 C LYS 7 n 8 LYS 7 C ORN 8 n 9 ORN 8 C GLU 9 n 10 GLU 9 C PHE 10 n 11 PHE 10 C HAO 11 n 12 HAO 11 C 4BF 12 n 13 4BF 12 C LYS 13 n 14 LYS 13 C ORN 0 n 1 ORN 0 D SER 1 n 2 SER 1 D VAL 2 n 3 VAL 2 D GLN 3 n 4 GLN 3 D ILE 4 n 5 ILE 4 D VAL 5 n 6 VAL 5 D TYR 6 n 7 TYR 6 D LYS 7 n 8 LYS 7 D ORN 8 n 9 ORN 8 D GLU 9 n 10 GLU 9 D PHE 10 n 11 PHE 10 D HAO 11 n 12 HAO 11 D 4BF 12 n 13 4BF 12 D LYS 13 n 14 LYS 13 D 1.8492 0.1395 -1.4144 4.1704 1.2660 1.9376 -0.0194 0.1181 -0.0020 -0.0831 -0.1537 0.3266 0.1580 -0.1659 0.1731 -0.0279 0.0009 -0.0064 -0.0900 0.0008 0.0043 refined 10.4438 -1.9065 23.2075 X-RAY DIFFRACTION 2.3895 -1.6697 -2.7145 5.1972 2.8130 3.7185 0.1848 0.2965 0.1487 -0.3851 -0.1897 0.0221 -0.1307 -0.2034 0.0049 -0.1507 0.0157 -0.0114 -0.1791 -0.0059 -0.0501 refined 11.8810 8.2013 21.8595 X-RAY DIFFRACTION 0.1518 0.0014 0.7420 4.3502 -1.4501 2.5646 0.1262 -0.0309 0.0197 0.2342 -0.2080 -0.4126 -0.2411 0.3486 0.0818 0.0682 0.0020 -0.0025 -0.0538 0.0367 0.0153 refined 5.2427 9.6723 -0.8092 X-RAY DIFFRACTION -0.0125 0.1943 0.2650 7.4537 1.0181 3.3683 0.2177 0.0841 -0.0601 -0.0967 -0.1541 -0.5075 0.1527 0.2822 -0.0636 0.0135 0.0035 -0.0343 -0.0877 0.0242 0.0060 refined 4.4004 -0.3648 -2.9006 X-RAY DIFFRACTION A 0 A 13 X-RAY DIFFRACTION 1 B 0 B 13 X-RAY DIFFRACTION 2 C 0 C 13 X-RAY DIFFRACTION 3 D 0 D 13 X-RAY DIFFRACTION 4 software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 2 dimeric 1760 -39 3210 1610 -34 3290 A ORN 0 L-ORNITHINE A ORN 1 ALA A ORN 8 L-ORNITHINE A ORN 9 ALA A 4BF 12 4-BROMO-L-PHENYLALANINE A 4BF 13 TYR B ORN 0 L-ORNITHINE B ORN 1 ALA B ORN 8 L-ORNITHINE B ORN 9 ALA B 4BF 12 4-BROMO-L-PHENYLALANINE B 4BF 13 TYR C ORN 0 L-ORNITHINE C ORN 1 ALA C ORN 8 L-ORNITHINE C ORN 9 ALA C 4BF 12 4-BROMO-L-PHENYLALANINE C 4BF 13 TYR D ORN 0 L-ORNITHINE D ORN 1 ALA D ORN 8 L-ORNITHINE D ORN 9 ALA D 4BF 12 4-BROMO-L-PHENYLALANINE D 4BF 13 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 4 A N ILE 5 B O TYR 6 B O TYR 7 C N TYR 6 C N TYR 7 D O ILE 4 D O ILE 5 1 A CG LYS 13 A CG LYS 14 1 Y 1 A CD LYS 13 A CD LYS 14 1 Y 1 A CE LYS 13 A CE LYS 14 1 Y 1 A NZ LYS 13 A NZ LYS 14 1 Y 1 D CG LYS 13 D CG LYS 14 1 Y 1 D CD LYS 13 D CD LYS 14 1 Y 1 D CE LYS 13 D CE LYS 14 1 Y 1 D NZ LYS 13 D NZ LYS 14 1 Y 1 B 4BF 12 -23.38 A 1 B 4BF 12 -25.31 B 1 C ORN 8 -11.13 1 D ORN 8 12.32 1 11.59 1.60 122.70 134.29 A A A O C N ORN ORN SER 0 0 1 Y 1 26.28 2.20 117.20 143.48 A A A CA C N HAO HAO 4BF 11 11 12 Y 1 24.46 2.20 117.20 141.66 B B B CA C N HAO HAO 4BF 11 11 12 Y 1 -12.58 1.60 122.70 110.12 B B B O C N 4BF 4BF LYS 12 12 13 Y 1 31.30 2.20 117.20 148.50 C C C CA C N HAO HAO 4BF 11 11 12 Y 1 -14.75 2.20 117.20 102.45 D D D CA C N ORN ORN GLU 8 8 9 Y 1 30.60 2.20 117.20 147.80 D D D CA C N HAO HAO 4BF 11 11 12 Y 1 A A C N ORN SER 0 1 0.140 0.023 1.336 1.476 Y 1 D D C N ORN SER 0 1 0.180 0.023 1.336 1.516 Y 30.34 1.9989 0.0000 -0.3510 -4.4835 0.0000 2.4846 0.9405 0.9206 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS; U VALUES: RESIDUAL ONLY 0.2294 0.1818 0.1842 1.82 18.37 369 7365 5.01 100.0000 1.000 0.500 5.9890 0.0860 0.1368 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT 0.1370 0.1430 0.8000 0.8000 1.4000 MAXIMUM LIKELIHOOD MASK 0.196 1.82 18.37 50 641 71 0 520 0.010 646 HARMONIC 2.00 1.38 869 HARMONIC 2.00 129 SINUSOIDAL 2.00 29 HARMONIC 2.00 97 HARMONIC 5.00 430 HARMONIC 20.00 0 SEMIHARMONIC 5.00 0.2168 0.1687 0.1712 2.04 103 1945 2048 5 5.03 21.25 1.8200 18.3700 4E0O -3.000 0.056 1 10.330 96.500 0.411 1.850 1.900 2.530 1 96.200 0.289 1.900 1.950 3.470 1 95.300 0.228 1.950 2.010 4.040 1 95.900 0.179 2.010 2.070 5.270 1 97.400 0.154 2.070 2.140 6.450 1 96.300 0.115 2.140 2.210 7.170 1 97.300 0.125 2.210 2.290 7.860 1 97.200 0.114 2.290 2.390 7.880 1 96.900 0.083 2.390 2.490 9.810 1 96.300 0.076 2.490 2.620 10.010 1 97.800 0.067 2.620 2.760 12.200 1 96.600 0.053 2.760 2.930 13.570 1 97.800 0.047 2.930 3.130 15.880 1 96.500 0.042 3.130 3.380 17.660 1 96.100 0.036 3.380 3.700 20.110 1 94.800 0.033 3.700 4.140 20.680 1 96.200 0.030 4.140 4.780 22.810 1 96.200 0.029 4.780 5.850 22.960 1 97.000 0.026 5.850 8.270 21.660 1 96.500 0.024 8.270 23.540 1 88.300 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Wed Jun 24 14:00:05 2009 http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.1.4 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 refinement BUSTER 2.8.0 SVQIVYK segment from human Tau (305-311) displayed on 54-membered macrocycle scaffold (form III) 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 3 N N 2 N N 2 N N 2 N N 3 N N 3 N N 2 N N 2 N N 4 N N 4 N N 4 N N 4 N N covale 1.476 both A ORN 0 A C ORN 1 1_555 A SER 1 A N SER 2 1_555 covale 1.370 both A ORN 0 A NE ORN 1 1_555 A LYS 13 A C LYS 14 1_555 covale 1.387 both A LYS 7 A C LYS 8 1_555 A ORN 8 A NE ORN 9 1_555 covale 1.355 both A ORN 8 A C ORN 9 1_555 A GLU 9 A N GLU 10 1_555 covale 1.379 both A PHE 10 A C PHE 11 1_555 A HAO 11 A N HAO 12 1_555 covale 1.358 both A HAO 11 A C HAO 12 1_555 A 4BF 12 A N 4BF 13 1_555 covale 1.338 both A 4BF 12 A C 4BF 13 1_555 A LYS 13 A N LYS 14 1_555 covale 1.449 both B ORN 0 B C ORN 1 1_555 B SER 1 B N SER 2 1_555 covale 1.411 both B ORN 0 B NE ORN 1 1_555 B LYS 13 B C LYS 14 1_555 covale 1.370 both B LYS 7 B C LYS 8 1_555 B ORN 8 B NE ORN 9 1_555 covale 1.335 both B ORN 8 B C ORN 9 1_555 B GLU 9 B N GLU 10 1_555 covale 1.333 both B PHE 10 B C PHE 11 1_555 B HAO 11 B N HAO 12 1_555 covale 1.303 both B HAO 11 B C HAO 12 1_555 B 4BF 12 B N 4BF 13 1_555 covale 1.354 both B 4BF 12 B C 4BF 13 1_555 B LYS 13 B N LYS 14 1_555 covale 1.451 both C ORN 0 C C ORN 1 1_555 C SER 1 C N SER 2 1_555 covale 1.319 both C ORN 0 C NE ORN 1 1_555 C LYS 13 C C LYS 14 1_555 covale 1.454 both C LYS 7 C C LYS 8 1_555 C ORN 8 C NE ORN 9 1_555 covale 1.346 both C ORN 8 C C ORN 9 1_555 C GLU 9 C N GLU 10 1_555 covale 1.347 both C PHE 10 C C PHE 11 1_555 C HAO 11 C N HAO 12 1_555 covale 1.236 both C HAO 11 C C HAO 12 1_555 C 4BF 12 C N 4BF 13 1_555 covale 1.357 both C 4BF 12 C C 4BF 13 1_555 C LYS 13 C N LYS 14 1_555 covale 1.516 both D ORN 0 D C ORN 1 1_555 D SER 1 D N SER 2 1_555 covale 1.348 both D ORN 0 D NE ORN 1 1_555 D LYS 13 D C LYS 14 1_555 covale 1.340 both D LYS 7 D C LYS 8 1_555 D ORN 8 D NE ORN 9 1_555 covale 1.403 both D ORN 8 D C ORN 9 1_555 D GLU 9 D N GLU 10 1_555 covale 1.329 both D PHE 10 D C PHE 11 1_555 D HAO 11 D N HAO 12 1_555 covale 1.290 both D HAO 11 D C HAO 12 1_555 D 4BF 12 D N 4BF 13 1_555 covale 1.348 both D 4BF 12 D C 4BF 13 1_555 D LYS 13 D N LYS 14 1_555 PROTEIN FIBRIL amyloid, out-of-register, fiber-forming, macrocycle, PROTEIN FIBRIL 4E0O PDB 1 1 4E0O (ORN)SVQIVYK(ORN)EF(HAO)(4BF)K 0 13 4E0O 0 13 4E0O A 1 1 14 0 13 4E0O 0 13 4E0O B 1 1 14 0 13 4E0O 0 13 4E0O C 1 1 14 0 13 4E0O 0 13 4E0O D 1 1 14 2 2 anti-parallel anti-parallel A ILE 4 A ILE 5 A TYR 6 A TYR 7 B ILE 4 B ILE 5 B TYR 6 B TYR 7 C ILE 4 C ILE 5 C TYR 6 C TYR 7 D ILE 4 D ILE 5 D TYR 6 D TYR 7 BINDING SITE FOR RESIDUE MPD A 101 A MPD 101 Software 4 BINDING SITE FOR RESIDUE MPD A 102 A MPD 102 Software 5 BINDING SITE FOR RESIDUE PO4 B 101 B PO4 101 Software 6 BINDING SITE FOR RESIDUE MPD B 102 B MPD 102 Software 5 BINDING SITE FOR RESIDUE MPD B 103 B MPD 103 Software 3 BINDING SITE FOR RESIDUE MPD C 101 C MPD 101 Software 5 BINDING SITE FOR RESIDUE PO4 D 101 D PO4 101 Software 6 BINDING SITE FOR RESIDUE PO4 D 102 D PO4 102 Software 6 BINDING SITE FOR RESIDUE MPD D 103 D MPD 103 Software 5 BINDING SITE FOR RESIDUE MPD D 104 D MPD 104 Software 4 A VAL 5 A VAL 6 4 1_555 A GLU 9 A GLU 10 4 1_555 A PHE 10 A PHE 11 4 1_555 A HAO 11 A HAO 12 4 1_555 A VAL 2 A VAL 3 5 1_555 A HAO 11 A HAO 12 5 1_555 A 4BF 12 A 4BF 13 5 1_555 B HAO 11 B HAO 12 5 1_545 B 4BF 12 B 4BF 13 5 1_545 B TYR 6 B TYR 7 6 1_555 B ORN 8 B ORN 9 6 1_555 B HOH 203 P HOH 6 1_555 B HOH 209 P HOH 6 1_555 B HOH 212 P HOH 6 1_555 B HOH 213 P HOH 6 1_555 B VAL 5 B VAL 6 5 1_555 B GLU 9 B GLU 10 5 1_555 B PHE 10 B PHE 11 5 1_555 B HAO 11 B HAO 12 5 1_555 B HOH 216 P HOH 5 1_555 B GLN 3 B GLN 4 3 1_555 B VAL 5 B VAL 6 3 1_555 B HAO 11 B HAO 12 3 1_555 C GLN 3 C GLN 4 5 1_555 C VAL 5 C VAL 6 5 1_555 C HAO 11 C HAO 12 5 1_555 C 4BF 12 C 4BF 13 5 1_555 D 4BF 12 D 4BF 13 5 1_565 D TYR 6 D TYR 7 6 1_555 D ORN 8 D ORN 9 6 1_555 D PO4 102 L PO4 6 1_555 D HOH 207 R HOH 6 1_555 D HOH 209 R HOH 6 1_555 D HOH 210 R HOH 6 1_555 D ORN 8 D ORN 9 6 1_555 D PO4 101 K PO4 6 1_555 D HOH 201 R HOH 6 1_555 D HOH 208 R HOH 6 1_555 D HOH 211 R HOH 6 1_555 D HOH 212 R HOH 6 1_555 C VAL 2 C VAL 3 5 1_545 C HAO 11 C HAO 12 5 1_545 C 4BF 12 C 4BF 13 5 1_545 D HAO 11 D HAO 12 5 1_555 D 4BF 12 D 4BF 13 5 1_555 D VAL 5 D VAL 6 4 1_555 D GLU 9 D GLU 10 4 1_555 D PHE 10 D PHE 11 4 1_555 D HAO 11 D HAO 12 4 1_555 4 P 1 21 1