0.007785
0.000000
0.000000
0.000000
0.007785
0.000000
0.000000
0.000000
0.013091
0.00000
0.00000
0.00000
Durand, E.
Audoly, G.
Derrez, E.
Spinelli, S.
Ortiz-Lombardia, M.
Cascales, E.
Raoult, D.
Cambillau, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
128.460
128.460
76.390
C10 H15 N5 O10 P2
427.201
n
ADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
N
O
N
15
R
C
N
16
N
O
N
17
R
C
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
Y
22
N
C
N
23
N
N
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
C
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
N
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
R
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
S
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
N
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
O
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
C
N
180
N
O
N
181
N
C
N
182
N
O
N
183
N
C
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
N
C
Y
198
N
C
Y
199
N
N
Y
200
N
C
Y
201
N
C
Y
202
N
N
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
S
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
N
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
N
291
N
C
N
292
N
S
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
MG
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
C
N
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
O
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
S
N
362
N
O
N
363
N
O
N
364
N
O
N
365
N
O
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
R
C
N
371
N
O
N
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
N
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
N
421
N
O
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
N
439
N
C
N
440
N
C
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
Y
30
N
sing
Y
31
N
sing
Y
32
N
doub
N
33
N
sing
Y
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
doub
N
39
N
sing
N
40
N
sing
Y
41
N
sing
Y
42
N
doub
N
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
Y
197
N
sing
Y
198
N
doub
Y
199
N
doub
N
200
N
sing
Y
201
N
sing
N
202
N
sing
Y
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
Y
305
N
doub
Y
306
N
sing
Y
307
N
sing
N
308
N
sing
Y
309
N
doub
N
310
N
sing
Y
311
N
doub
N
312
N
sing
Y
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
Y
378
N
doub
Y
379
N
sing
Y
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
sing
Y
387
N
doub
N
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
Y
406
N
doub
Y
407
N
sing
Y
408
N
sing
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
doub
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
US
J.Biol.Chem.
JBCHA3
0071
1083-351X
Structure and functional characterization of the Vibrio cholerae toxin
from the VgrG/MARTX family.
2012
10.2210/pdb4e1c/pdb
pdb_00004e1c
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
IMAGE PLATE
2012-03-02
MAR scanner 345 mm plate
MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
BRUKER AXS MICROSTAR
43742.215
VgrG protein
Vibrio cholerae VgrG1 ACD (unp residues 716-1111)
1
man
polymer
427.201
ADENOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
96.063
SULFATE ION
4
syn
non-polymer
18.015
water
470
nat
water
no
no
NAQPNLGRSTKATPDFPTHFPKSSIGIENELAGLVVAMPANSAQKFGYVKSAQGDALFMLTKDMNQGSYQRPPSLQDGKN
YQNWQTHTVELVSYPCEMDDKAAVETRKQAMLWLATHFTTHIDQSNHQPLAPIQSEDGRFVIEITNAKHVIAAGNGISAE
SQGQTITMTPSGQQATVGVAAKGFGTSATPELRLLESAPWYQKSLKSQFASLTSAENLDDKELAANVFAYLTSIYLKTAE
LAKKFGIYINEWDPMSEQITPNANGLTDPKVKNAWEILPRTKPSKIVEILSKSDAKAVMKHIKPQLQSRYSESLSKNVFQ
YFQDGGEVAGHGINNATVGDKHSPELAILFEFRTVPNELQSYLPKTESTTKSEVKLLDQFDPMKRKTVIQQVESLV
NAQPNLGRSTKATPDFPTHFPKSSIGIENELAGLVVAMPANSAQKFGYVKSAQGDALFMLTKDMNQGSYQRPPSLQDGKN
YQNWQTHTVELVSYPCEMDDKAAVETRKQAMLWLATHFTTHIDQSNHQPLAPIQSEDGRFVIEITNAKHVIAAGNGISAE
SQGQTITMTPSGQQATVGVAAKGFGTSATPELRLLESAPWYQKSLKSQFASLTSAENLDDKELAANVFAYLTSIYLKTAE
LAKKFGIYINEWDPMSEQITPNANGLTDPKVKNAWEILPRTKPSKIVEILSKSDAKAVMKHIKPQLQSRYSESLSKNVFQ
YFQDGGEVAGHGINNATVGDKHSPELAILFEFRTVPNELQSYLPKTESTTKSEVKLLDQFDPMKRKTVIQQVESLV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
O395
sample
VC_1416, VgrG1
666
Vibrio cholerae
511693
Escherichia coli
BL21
petG20A
1
3.61
65.90
6.3
300 nL of protein at 13mg/mL, 100 nL of 2.4 M AmSO4, 0.1 M Bi-Tris, pH 6.3, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-08-29
1
1
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-03-06
REL
REL
ADP
ADENOSINE-5'-DIPHOSPHATE
GOL
GLYCEROL
MG
MAGNESIUM ION
SO4
SULFATE ION
HOH
water
4DTF
PDB ENTRY 4DTF
PDB
experimental model
ADP
1
2
ADP
ADP
401
A
GOL
1
3
GOL
GOL
402
A
MG
2
4
MG
MG
403
A
MG
3
4
MG
MG
404
A
SO4
1
5
SO4
SO4
405
A
SO4
2
5
SO4
SO4
406
A
SO4
3
5
SO4
SO4
407
A
SO4
4
5
SO4
SO4
408
A
HOH
1
6
HOH
HOH
501
A
HOH
2
6
HOH
HOH
502
A
HOH
3
6
HOH
HOH
503
A
HOH
4
6
HOH
HOH
504
A
HOH
5
6
HOH
HOH
505
A
HOH
6
6
HOH
HOH
506
A
HOH
7
6
HOH
HOH
507
A
HOH
8
6
HOH
HOH
508
A
HOH
9
6
HOH
HOH
509
A
HOH
10
6
HOH
HOH
510
A
HOH
11
6
HOH
HOH
511
A
HOH
12
6
HOH
HOH
512
A
HOH
513
6
HOH
HOH
513
A
HOH
14
6
HOH
HOH
514
A
HOH
15
6
HOH
HOH
515
A
HOH
16
6
HOH
HOH
516
A
HOH
17
6
HOH
HOH
517
A
HOH
18
6
HOH
HOH
518
A
HOH
19
6
HOH
HOH
519
A
HOH
20
6
HOH
HOH
520
A
HOH
21
6
HOH
HOH
521
A
HOH
22
6
HOH
HOH
522
A
HOH
23
6
HOH
HOH
523
A
HOH
24
6
HOH
HOH
524
A
HOH
25
6
HOH
HOH
525
A
HOH
26
6
HOH
HOH
526
A
HOH
27
6
HOH
HOH
527
A
HOH
28
6
HOH
HOH
528
A
HOH
29
6
HOH
HOH
529
A
HOH
30
6
HOH
HOH
530
A
HOH
31
6
HOH
HOH
531
A
HOH
32
6
HOH
HOH
532
A
HOH
33
6
HOH
HOH
533
A
HOH
34
6
HOH
HOH
534
A
HOH
35
6
HOH
HOH
535
A
HOH
36
6
HOH
HOH
536
A
HOH
37
6
HOH
HOH
537
A
HOH
38
6
HOH
HOH
538
A
HOH
39
6
HOH
HOH
539
A
HOH
40
6
HOH
HOH
540
A
HOH
41
6
HOH
HOH
541
A
HOH
42
6
HOH
HOH
542
A
HOH
43
6
HOH
HOH
543
A
HOH
44
6
HOH
HOH
544
A
HOH
45
6
HOH
HOH
545
A
HOH
46
6
HOH
HOH
546
A
HOH
47
6
HOH
HOH
547
A
HOH
48
6
HOH
HOH
548
A
HOH
49
6
HOH
HOH
549
A
HOH
50
6
HOH
HOH
550
A
HOH
51
6
HOH
HOH
551
A
HOH
52
6
HOH
HOH
552
A
HOH
53
6
HOH
HOH
553
A
HOH
54
6
HOH
HOH
554
A
HOH
55
6
HOH
HOH
555
A
HOH
56
6
HOH
HOH
556
A
HOH
57
6
HOH
HOH
557
A
HOH
58
6
HOH
HOH
558
A
HOH
59
6
HOH
HOH
559
A
HOH
60
6
HOH
HOH
560
A
HOH
61
6
HOH
HOH
561
A
HOH
62
6
HOH
HOH
562
A
HOH
63
6
HOH
HOH
563
A
HOH
64
6
HOH
HOH
564
A
HOH
65
6
HOH
HOH
565
A
HOH
66
6
HOH
HOH
566
A
HOH
67
6
HOH
HOH
567
A
HOH
68
6
HOH
HOH
568
A
HOH
569
6
HOH
HOH
569
A
HOH
70
6
HOH
HOH
570
A
HOH
71
6
HOH
HOH
571
A
HOH
72
6
HOH
HOH
572
A
HOH
73
6
HOH
HOH
573
A
HOH
74
6
HOH
HOH
574
A
HOH
75
6
HOH
HOH
575
A
HOH
76
6
HOH
HOH
576
A
HOH
77
6
HOH
HOH
577
A
HOH
78
6
HOH
HOH
578
A
HOH
79
6
HOH
HOH
579
A
HOH
80
6
HOH
HOH
580
A
HOH
81
6
HOH
HOH
581
A
HOH
82
6
HOH
HOH
582
A
HOH
83
6
HOH
HOH
583
A
HOH
84
6
HOH
HOH
584
A
HOH
85
6
HOH
HOH
585
A
HOH
86
6
HOH
HOH
586
A
HOH
87
6
HOH
HOH
587
A
HOH
88
6
HOH
HOH
588
A
HOH
89
6
HOH
HOH
589
A
HOH
90
6
HOH
HOH
590
A
HOH
91
6
HOH
HOH
591
A
HOH
92
6
HOH
HOH
592
A
HOH
93
6
HOH
HOH
593
A
HOH
94
6
HOH
HOH
594
A
HOH
95
6
HOH
HOH
595
A
HOH
96
6
HOH
HOH
596
A
HOH
97
6
HOH
HOH
597
A
HOH
98
6
HOH
HOH
598
A
HOH
99
6
HOH
HOH
599
A
HOH
100
6
HOH
HOH
600
A
HOH
101
6
HOH
HOH
601
A
HOH
102
6
HOH
HOH
602
A
HOH
103
6
HOH
HOH
603
A
HOH
104
6
HOH
HOH
604
A
HOH
105
6
HOH
HOH
605
A
HOH
106
6
HOH
HOH
606
A
HOH
107
6
HOH
HOH
607
A
HOH
108
6
HOH
HOH
608
A
HOH
109
6
HOH
HOH
609
A
HOH
110
6
HOH
HOH
610
A
HOH
111
6
HOH
HOH
611
A
HOH
112
6
HOH
HOH
612
A
HOH
113
6
HOH
HOH
613
A
HOH
114
6
HOH
HOH
614
A
HOH
115
6
HOH
HOH
615
A
HOH
116
6
HOH
HOH
616
A
HOH
117
6
HOH
HOH
617
A
HOH
118
6
HOH
HOH
618
A
HOH
119
6
HOH
HOH
619
A
HOH
120
6
HOH
HOH
620
A
HOH
121
6
HOH
HOH
621
A
HOH
122
6
HOH
HOH
622
A
HOH
123
6
HOH
HOH
623
A
HOH
124
6
HOH
HOH
624
A
HOH
125
6
HOH
HOH
625
A
HOH
126
6
HOH
HOH
626
A
HOH
127
6
HOH
HOH
627
A
HOH
128
6
HOH
HOH
628
A
HOH
129
6
HOH
HOH
629
A
HOH
130
6
HOH
HOH
630
A
HOH
131
6
HOH
HOH
631
A
HOH
132
6
HOH
HOH
632
A
HOH
133
6
HOH
HOH
633
A
HOH
134
6
HOH
HOH
634
A
HOH
135
6
HOH
HOH
635
A
HOH
136
6
HOH
HOH
636
A
HOH
137
6
HOH
HOH
637
A
HOH
138
6
HOH
HOH
638
A
HOH
139
6
HOH
HOH
639
A
HOH
140
6
HOH
HOH
640
A
HOH
141
6
HOH
HOH
641
A
HOH
142
6
HOH
HOH
642
A
HOH
143
6
HOH
HOH
643
A
HOH
144
6
HOH
HOH
644
A
HOH
145
6
HOH
HOH
645
A
HOH
146
6
HOH
HOH
646
A
HOH
147
6
HOH
HOH
647
A
HOH
148
6
HOH
HOH
648
A
HOH
149
6
HOH
HOH
649
A
HOH
150
6
HOH
HOH
650
A
HOH
151
6
HOH
HOH
651
A
HOH
152
6
HOH
HOH
652
A
HOH
153
6
HOH
HOH
653
A
HOH
154
6
HOH
HOH
654
A
HOH
155
6
HOH
HOH
655
A
HOH
156
6
HOH
HOH
656
A
HOH
157
6
HOH
HOH
657
A
HOH
158
6
HOH
HOH
658
A
HOH
159
6
HOH
HOH
659
A
HOH
160
6
HOH
HOH
660
A
HOH
161
6
HOH
HOH
661
A
HOH
162
6
HOH
HOH
662
A
HOH
163
6
HOH
HOH
663
A
HOH
164
6
HOH
HOH
664
A
HOH
165
6
HOH
HOH
665
A
HOH
166
6
HOH
HOH
666
A
HOH
167
6
HOH
HOH
667
A
HOH
168
6
HOH
HOH
668
A
HOH
169
6
HOH
HOH
669
A
HOH
170
6
HOH
HOH
670
A
HOH
171
6
HOH
HOH
671
A
HOH
172
6
HOH
HOH
672
A
HOH
173
6
HOH
HOH
673
A
HOH
174
6
HOH
HOH
674
A
HOH
175
6
HOH
HOH
675
A
HOH
176
6
HOH
HOH
676
A
HOH
177
6
HOH
HOH
677
A
HOH
178
6
HOH
HOH
678
A
HOH
179
6
HOH
HOH
679
A
HOH
180
6
HOH
HOH
680
A
HOH
181
6
HOH
HOH
681
A
HOH
182
6
HOH
HOH
682
A
HOH
183
6
HOH
HOH
683
A
HOH
684
6
HOH
HOH
684
A
HOH
185
6
HOH
HOH
685
A
HOH
186
6
HOH
HOH
686
A
HOH
187
6
HOH
HOH
687
A
HOH
188
6
HOH
HOH
688
A
HOH
189
6
HOH
HOH
689
A
HOH
190
6
HOH
HOH
690
A
HOH
191
6
HOH
HOH
691
A
HOH
192
6
HOH
HOH
692
A
HOH
193
6
HOH
HOH
693
A
HOH
194
6
HOH
HOH
694
A
HOH
195
6
HOH
HOH
695
A
HOH
196
6
HOH
HOH
696
A
HOH
197
6
HOH
HOH
697
A
HOH
198
6
HOH
HOH
698
A
HOH
199
6
HOH
HOH
699
A
HOH
200
6
HOH
HOH
700
A
HOH
201
6
HOH
HOH
701
A
HOH
202
6
HOH
HOH
702
A
HOH
203
6
HOH
HOH
703
A
HOH
204
6
HOH
HOH
704
A
HOH
205
6
HOH
HOH
705
A
HOH
206
6
HOH
HOH
706
A
HOH
207
6
HOH
HOH
707
A
HOH
208
6
HOH
HOH
708
A
HOH
209
6
HOH
HOH
709
A
HOH
210
6
HOH
HOH
710
A
HOH
211
6
HOH
HOH
711
A
HOH
212
6
HOH
HOH
712
A
HOH
213
6
HOH
HOH
713
A
HOH
214
6
HOH
HOH
714
A
HOH
215
6
HOH
HOH
715
A
HOH
216
6
HOH
HOH
716
A
HOH
217
6
HOH
HOH
717
A
HOH
218
6
HOH
HOH
718
A
HOH
219
6
HOH
HOH
719
A
HOH
220
6
HOH
HOH
720
A
HOH
221
6
HOH
HOH
721
A
HOH
222
6
HOH
HOH
722
A
HOH
223
6
HOH
HOH
723
A
HOH
224
6
HOH
HOH
724
A
HOH
225
6
HOH
HOH
725
A
HOH
226
6
HOH
HOH
726
A
HOH
227
6
HOH
HOH
727
A
HOH
228
6
HOH
HOH
728
A
HOH
229
6
HOH
HOH
729
A
HOH
230
6
HOH
HOH
730
A
HOH
231
6
HOH
HOH
731
A
HOH
233
6
HOH
HOH
732
A
HOH
234
6
HOH
HOH
733
A
HOH
235
6
HOH
HOH
734
A
HOH
236
6
HOH
HOH
735
A
HOH
237
6
HOH
HOH
736
A
HOH
238
6
HOH
HOH
737
A
HOH
239
6
HOH
HOH
738
A
HOH
240
6
HOH
HOH
739
A
HOH
241
6
HOH
HOH
740
A
HOH
242
6
HOH
HOH
741
A
HOH
243
6
HOH
HOH
742
A
HOH
244
6
HOH
HOH
743
A
HOH
245
6
HOH
HOH
744
A
HOH
246
6
HOH
HOH
745
A
HOH
247
6
HOH
HOH
746
A
HOH
248
6
HOH
HOH
747
A
HOH
249
6
HOH
HOH
748
A
HOH
250
6
HOH
HOH
749
A
HOH
251
6
HOH
HOH
750
A
HOH
252
6
HOH
HOH
751
A
HOH
253
6
HOH
HOH
752
A
HOH
254
6
HOH
HOH
753
A
HOH
255
6
HOH
HOH
754
A
HOH
256
6
HOH
HOH
755
A
HOH
257
6
HOH
HOH
756
A
HOH
258
6
HOH
HOH
757
A
HOH
259
6
HOH
HOH
758
A
HOH
260
6
HOH
HOH
759
A
HOH
261
6
HOH
HOH
760
A
HOH
262
6
HOH
HOH
761
A
HOH
263
6
HOH
HOH
762
A
HOH
264
6
HOH
HOH
763
A
HOH
265
6
HOH
HOH
764
A
HOH
266
6
HOH
HOH
765
A
HOH
267
6
HOH
HOH
766
A
HOH
268
6
HOH
HOH
767
A
HOH
269
6
HOH
HOH
768
A
HOH
270
6
HOH
HOH
769
A
HOH
271
6
HOH
HOH
770
A
HOH
272
6
HOH
HOH
771
A
HOH
273
6
HOH
HOH
772
A
HOH
274
6
HOH
HOH
773
A
HOH
275
6
HOH
HOH
774
A
HOH
276
6
HOH
HOH
775
A
HOH
277
6
HOH
HOH
776
A
HOH
278
6
HOH
HOH
777
A
HOH
279
6
HOH
HOH
778
A
HOH
280
6
HOH
HOH
779
A
HOH
281
6
HOH
HOH
780
A
HOH
282
6
HOH
HOH
781
A
HOH
283
6
HOH
HOH
782
A
HOH
284
6
HOH
HOH
783
A
HOH
285
6
HOH
HOH
784
A
HOH
286
6
HOH
HOH
785
A
HOH
287
6
HOH
HOH
786
A
HOH
288
6
HOH
HOH
787
A
HOH
289
6
HOH
HOH
788
A
HOH
290
6
HOH
HOH
789
A
HOH
291
6
HOH
HOH
790
A
HOH
292
6
HOH
HOH
791
A
HOH
293
6
HOH
HOH
792
A
HOH
294
6
HOH
HOH
793
A
HOH
295
6
HOH
HOH
794
A
HOH
296
6
HOH
HOH
795
A
HOH
297
6
HOH
HOH
796
A
HOH
298
6
HOH
HOH
797
A
HOH
299
6
HOH
HOH
798
A
HOH
300
6
HOH
HOH
799
A
HOH
301
6
HOH
HOH
800
A
HOH
302
6
HOH
HOH
801
A
HOH
303
6
HOH
HOH
802
A
HOH
304
6
HOH
HOH
803
A
HOH
305
6
HOH
HOH
804
A
HOH
307
6
HOH
HOH
805
A
HOH
308
6
HOH
HOH
806
A
HOH
309
6
HOH
HOH
807
A
HOH
310
6
HOH
HOH
808
A
HOH
311
6
HOH
HOH
809
A
HOH
313
6
HOH
HOH
810
A
HOH
314
6
HOH
HOH
811
A
HOH
315
6
HOH
HOH
812
A
HOH
316
6
HOH
HOH
813
A
HOH
317
6
HOH
HOH
814
A
HOH
318
6
HOH
HOH
815
A
HOH
319
6
HOH
HOH
816
A
HOH
320
6
HOH
HOH
817
A
HOH
321
6
HOH
HOH
818
A
HOH
322
6
HOH
HOH
819
A
HOH
323
6
HOH
HOH
820
A
HOH
324
6
HOH
HOH
821
A
HOH
325
6
HOH
HOH
822
A
HOH
326
6
HOH
HOH
823
A
HOH
327
6
HOH
HOH
824
A
HOH
328
6
HOH
HOH
825
A
HOH
329
6
HOH
HOH
826
A
HOH
330
6
HOH
HOH
827
A
HOH
331
6
HOH
HOH
828
A
HOH
332
6
HOH
HOH
829
A
HOH
333
6
HOH
HOH
830
A
HOH
334
6
HOH
HOH
831
A
HOH
335
6
HOH
HOH
832
A
HOH
336
6
HOH
HOH
833
A
HOH
337
6
HOH
HOH
834
A
HOH
338
6
HOH
HOH
835
A
HOH
839
6
HOH
HOH
836
A
HOH
340
6
HOH
HOH
837
A
HOH
341
6
HOH
HOH
838
A
HOH
342
6
HOH
HOH
839
A
HOH
343
6
HOH
HOH
840
A
HOH
344
6
HOH
HOH
841
A
HOH
345
6
HOH
HOH
842
A
HOH
346
6
HOH
HOH
843
A
HOH
347
6
HOH
HOH
844
A
HOH
348
6
HOH
HOH
845
A
HOH
349
6
HOH
HOH
846
A
HOH
350
6
HOH
HOH
847
A
HOH
851
6
HOH
HOH
848
A
HOH
352
6
HOH
HOH
849
A
HOH
353
6
HOH
HOH
850
A
HOH
354
6
HOH
HOH
851
A
HOH
355
6
HOH
HOH
852
A
HOH
356
6
HOH
HOH
853
A
HOH
357
6
HOH
HOH
854
A
HOH
358
6
HOH
HOH
855
A
HOH
359
6
HOH
HOH
856
A
HOH
360
6
HOH
HOH
857
A
HOH
361
6
HOH
HOH
858
A
HOH
362
6
HOH
HOH
859
A
HOH
363
6
HOH
HOH
860
A
HOH
364
6
HOH
HOH
861
A
HOH
365
6
HOH
HOH
862
A
HOH
366
6
HOH
HOH
863
A
HOH
367
6
HOH
HOH
864
A
HOH
870
6
HOH
HOH
865
A
HOH
371
6
HOH
HOH
866
A
HOH
372
6
HOH
HOH
867
A
HOH
373
6
HOH
HOH
868
A
HOH
374
6
HOH
HOH
869
A
HOH
375
6
HOH
HOH
870
A
HOH
376
6
HOH
HOH
871
A
HOH
377
6
HOH
HOH
872
A
HOH
378
6
HOH
HOH
873
A
HOH
379
6
HOH
HOH
874
A
HOH
380
6
HOH
HOH
875
A
HOH
381
6
HOH
HOH
876
A
HOH
382
6
HOH
HOH
877
A
HOH
383
6
HOH
HOH
878
A
HOH
884
6
HOH
HOH
879
A
HOH
385
6
HOH
HOH
880
A
HOH
386
6
HOH
HOH
881
A
HOH
387
6
HOH
HOH
882
A
HOH
388
6
HOH
HOH
883
A
HOH
889
6
HOH
HOH
884
A
HOH
890
6
HOH
HOH
885
A
HOH
391
6
HOH
HOH
886
A
HOH
393
6
HOH
HOH
887
A
HOH
394
6
HOH
HOH
888
A
HOH
395
6
HOH
HOH
889
A
HOH
896
6
HOH
HOH
890
A
HOH
397
6
HOH
HOH
891
A
HOH
398
6
HOH
HOH
892
A
HOH
399
6
HOH
HOH
893
A
HOH
400
6
HOH
HOH
894
A
HOH
401
6
HOH
HOH
895
A
HOH
402
6
HOH
HOH
896
A
HOH
403
6
HOH
HOH
897
A
HOH
404
6
HOH
HOH
898
A
HOH
405
6
HOH
HOH
899
A
HOH
406
6
HOH
HOH
900
A
HOH
407
6
HOH
HOH
901
A
HOH
408
6
HOH
HOH
902
A
HOH
409
6
HOH
HOH
903
A
HOH
410
6
HOH
HOH
904
A
HOH
411
6
HOH
HOH
905
A
HOH
412
6
HOH
HOH
906
A
HOH
413
6
HOH
HOH
907
A
HOH
414
6
HOH
HOH
908
A
HOH
415
6
HOH
HOH
909
A
HOH
416
6
HOH
HOH
910
A
HOH
417
6
HOH
HOH
911
A
HOH
418
6
HOH
HOH
912
A
HOH
419
6
HOH
HOH
913
A
HOH
420
6
HOH
HOH
914
A
HOH
421
6
HOH
HOH
915
A
HOH
422
6
HOH
HOH
916
A
HOH
424
6
HOH
HOH
917
A
HOH
425
6
HOH
HOH
918
A
HOH
426
6
HOH
HOH
919
A
HOH
427
6
HOH
HOH
920
A
HOH
428
6
HOH
HOH
921
A
HOH
929
6
HOH
HOH
922
A
HOH
430
6
HOH
HOH
923
A
HOH
431
6
HOH
HOH
924
A
HOH
432
6
HOH
HOH
925
A
HOH
433
6
HOH
HOH
926
A
HOH
434
6
HOH
HOH
927
A
HOH
435
6
HOH
HOH
928
A
HOH
936
6
HOH
HOH
929
A
HOH
437
6
HOH
HOH
930
A
HOH
438
6
HOH
HOH
931
A
HOH
439
6
HOH
HOH
932
A
HOH
440
6
HOH
HOH
933
A
HOH
441
6
HOH
HOH
934
A
HOH
442
6
HOH
HOH
935
A
HOH
443
6
HOH
HOH
936
A
HOH
444
6
HOH
HOH
937
A
HOH
445
6
HOH
HOH
938
A
HOH
446
6
HOH
HOH
939
A
HOH
447
6
HOH
HOH
940
A
HOH
448
6
HOH
HOH
941
A
HOH
449
6
HOH
HOH
942
A
HOH
450
6
HOH
HOH
943
A
HOH
451
6
HOH
HOH
944
A
HOH
452
6
HOH
HOH
945
A
HOH
453
6
HOH
HOH
946
A
HOH
454
6
HOH
HOH
947
A
HOH
455
6
HOH
HOH
948
A
HOH
456
6
HOH
HOH
949
A
HOH
457
6
HOH
HOH
950
A
HOH
458
6
HOH
HOH
951
A
HOH
459
6
HOH
HOH
952
A
HOH
460
6
HOH
HOH
953
A
HOH
961
6
HOH
HOH
954
A
HOH
462
6
HOH
HOH
955
A
HOH
463
6
HOH
HOH
956
A
HOH
464
6
HOH
HOH
957
A
HOH
465
6
HOH
HOH
958
A
HOH
466
6
HOH
HOH
959
A
HOH
468
6
HOH
HOH
960
A
HOH
469
6
HOH
HOH
961
A
HOH
470
6
HOH
HOH
962
A
HOH
471
6
HOH
HOH
963
A
HOH
472
6
HOH
HOH
964
A
HOH
473
6
HOH
HOH
965
A
HOH
474
6
HOH
HOH
966
A
HOH
475
6
HOH
HOH
967
A
HOH
476
6
HOH
HOH
968
A
HOH
477
6
HOH
HOH
969
A
HOH
478
6
HOH
HOH
970
A
n
1
-11
A
n
2
-10
A
n
3
-9
A
n
4
-8
A
n
5
-7
A
n
6
-6
A
n
7
-5
A
n
8
-4
A
n
9
-3
A
n
10
-2
A
n
11
-1
A
ALA
0
n
12
ALA
0
A
THR
1
n
13
THR
1
A
PRO
2
n
14
PRO
2
A
ASP
3
n
15
ASP
3
A
PHE
4
n
16
PHE
4
A
PRO
5
n
17
PRO
5
A
THR
6
n
18
THR
6
A
HIS
7
n
19
HIS
7
A
PHE
8
n
20
PHE
8
A
PRO
9
n
21
PRO
9
A
LYS
10
n
22
LYS
10
A
SER
11
n
23
SER
11
A
SER
12
n
24
SER
12
A
ILE
13
n
25
ILE
13
A
GLY
14
n
26
GLY
14
A
ILE
15
n
27
ILE
15
A
GLU
16
n
28
GLU
16
A
ASN
17
n
29
ASN
17
A
GLU
18
n
30
GLU
18
A
LEU
19
n
31
LEU
19
A
ALA
20
n
32
ALA
20
A
GLY
21
n
33
GLY
21
A
LEU
22
n
34
LEU
22
A
VAL
23
n
35
VAL
23
A
VAL
24
n
36
VAL
24
A
ALA
25
n
37
ALA
25
A
MET
26
n
38
MET
26
A
PRO
27
n
39
PRO
27
A
ALA
28
n
40
ALA
28
A
ASN
29
n
41
ASN
29
A
SER
30
n
42
SER
30
A
ALA
31
n
43
ALA
31
A
GLN
32
n
44
GLN
32
A
LYS
33
n
45
LYS
33
A
PHE
34
n
46
PHE
34
A
GLY
35
n
47
GLY
35
A
TYR
36
n
48
TYR
36
A
VAL
37
n
49
VAL
37
A
LYS
38
n
50
LYS
38
A
SER
39
n
51
SER
39
A
ALA
40
n
52
ALA
40
A
GLN
41
n
53
GLN
41
A
GLY
42
n
54
GLY
42
A
ASP
43
n
55
ASP
43
A
ALA
44
n
56
ALA
44
A
LEU
45
n
57
LEU
45
A
PHE
46
n
58
PHE
46
A
MET
47
n
59
MET
47
A
LEU
48
n
60
LEU
48
A
THR
49
n
61
THR
49
A
LYS
50
n
62
LYS
50
A
ASP
51
n
63
ASP
51
A
MET
52
n
64
MET
52
A
ASN
53
n
65
ASN
53
A
GLN
54
n
66
GLN
54
A
GLY
55
n
67
GLY
55
A
SER
56
n
68
SER
56
A
TYR
57
n
69
TYR
57
A
GLN
58
n
70
GLN
58
A
ARG
59
n
71
ARG
59
A
PRO
60
n
72
PRO
60
A
PRO
61
n
73
PRO
61
A
SER
62
n
74
SER
62
A
LEU
63
n
75
LEU
63
A
GLN
64
n
76
GLN
64
A
ASP
65
n
77
ASP
65
A
GLY
66
n
78
GLY
66
A
LYS
67
n
79
LYS
67
A
ASN
68
n
80
ASN
68
A
TYR
69
n
81
TYR
69
A
GLN
70
n
82
GLN
70
A
ASN
71
n
83
ASN
71
A
TRP
72
n
84
TRP
72
A
GLN
73
n
85
GLN
73
A
THR
74
n
86
THR
74
A
HIS
75
n
87
HIS
75
A
THR
76
n
88
THR
76
A
VAL
77
n
89
VAL
77
A
GLU
78
n
90
GLU
78
A
LEU
79
n
91
LEU
79
A
VAL
80
n
92
VAL
80
A
SER
81
n
93
SER
81
A
TYR
82
n
94
TYR
82
A
PRO
83
n
95
PRO
83
A
CYS
84
n
96
CYS
84
A
GLU
85
n
97
GLU
85
A
MET
86
n
98
MET
86
A
ASP
87
n
99
ASP
87
A
ASP
88
n
100
ASP
88
A
LYS
89
n
101
LYS
89
A
ALA
90
n
102
ALA
90
A
ALA
91
n
103
ALA
91
A
VAL
92
n
104
VAL
92
A
GLU
93
n
105
GLU
93
A
THR
94
n
106
THR
94
A
ARG
95
n
107
ARG
95
A
LYS
96
n
108
LYS
96
A
GLN
97
n
109
GLN
97
A
ALA
98
n
110
ALA
98
A
MET
99
n
111
MET
99
A
LEU
100
n
112
LEU
100
A
TRP
101
n
113
TRP
101
A
LEU
102
n
114
LEU
102
A
ALA
103
n
115
ALA
103
A
THR
104
n
116
THR
104
A
HIS
105
n
117
HIS
105
A
PHE
106
n
118
PHE
106
A
THR
107
n
119
THR
107
A
THR
108
n
120
THR
108
A
HIS
109
n
121
HIS
109
A
ILE
110
n
122
ILE
110
A
ASP
111
n
123
ASP
111
A
GLN
112
n
124
GLN
112
A
SER
113
n
125
SER
113
A
ASN
114
n
126
ASN
114
A
HIS
115
n
127
HIS
115
A
GLN
116
n
128
GLN
116
A
PRO
117
n
129
PRO
117
A
LEU
118
n
130
LEU
118
A
ALA
119
n
131
ALA
119
A
PRO
120
n
132
PRO
120
A
ILE
121
n
133
ILE
121
A
GLN
122
n
134
GLN
122
A
SER
123
n
135
SER
123
A
GLU
124
n
136
GLU
124
A
ASP
125
n
137
ASP
125
A
GLY
126
n
138
GLY
126
A
ARG
127
n
139
ARG
127
A
PHE
128
n
140
PHE
128
A
VAL
129
n
141
VAL
129
A
ILE
130
n
142
ILE
130
A
GLU
131
n
143
GLU
131
A
ILE
132
n
144
ILE
132
A
THR
133
n
145
THR
133
A
ASN
134
n
146
ASN
134
A
ALA
135
n
147
ALA
135
A
LYS
136
n
148
LYS
136
A
HIS
137
n
149
HIS
137
A
VAL
138
n
150
VAL
138
A
ILE
139
n
151
ILE
139
A
ALA
140
n
152
ALA
140
A
ALA
141
n
153
ALA
141
A
GLY
142
n
154
GLY
142
A
ASN
143
n
155
ASN
143
A
GLY
144
n
156
GLY
144
A
ILE
145
n
157
ILE
145
A
SER
146
n
158
SER
146
A
ALA
147
n
159
ALA
147
A
GLU
148
n
160
GLU
148
A
SER
149
n
161
SER
149
A
GLN
150
n
162
GLN
150
A
GLY
151
n
163
GLY
151
A
GLN
152
n
164
GLN
152
A
THR
153
n
165
THR
153
A
ILE
154
n
166
ILE
154
A
THR
155
n
167
THR
155
A
MET
156
n
168
MET
156
A
THR
157
n
169
THR
157
A
PRO
158
n
170
PRO
158
A
SER
159
n
171
SER
159
A
GLY
160
n
172
GLY
160
A
GLN
161
n
173
GLN
161
A
GLN
162
n
174
GLN
162
A
ALA
163
n
175
ALA
163
A
THR
164
n
176
THR
164
A
VAL
165
n
177
VAL
165
A
GLY
166
n
178
GLY
166
A
VAL
167
n
179
VAL
167
A
ALA
168
n
180
ALA
168
A
ALA
169
n
181
ALA
169
A
LYS
170
n
182
LYS
170
A
GLY
171
n
183
GLY
171
A
PHE
172
n
184
PHE
172
A
GLY
173
n
185
GLY
173
A
THR
174
n
186
THR
174
A
SER
175
n
187
SER
175
A
ALA
176
n
188
ALA
176
A
THR
177
n
189
THR
177
A
PRO
178
n
190
PRO
178
A
GLU
179
n
191
GLU
179
A
LEU
180
n
192
LEU
180
A
ARG
181
n
193
ARG
181
A
LEU
182
n
194
LEU
182
A
LEU
183
n
195
LEU
183
A
GLU
184
n
196
GLU
184
A
SER
185
n
197
SER
185
A
ALA
186
n
198
ALA
186
A
PRO
187
n
199
PRO
187
A
TRP
188
n
200
TRP
188
A
TYR
189
n
201
TYR
189
A
GLN
190
n
202
GLN
190
A
LYS
191
n
203
LYS
191
A
SER
192
n
204
SER
192
A
LEU
193
n
205
LEU
193
A
LYS
194
n
206
LYS
194
A
SER
195
n
207
SER
195
A
GLN
196
n
208
GLN
196
A
PHE
197
n
209
PHE
197
A
ALA
198
n
210
ALA
198
A
SER
199
n
211
SER
199
A
LEU
200
n
212
LEU
200
A
THR
201
n
213
THR
201
A
SER
202
n
214
SER
202
A
ALA
203
n
215
ALA
203
A
GLU
204
n
216
GLU
204
A
ASN
205
n
217
ASN
205
A
LEU
206
n
218
LEU
206
A
ASP
207
n
219
ASP
207
A
ASP
208
n
220
ASP
208
A
LYS
209
n
221
LYS
209
A
GLU
210
n
222
GLU
210
A
LEU
211
n
223
LEU
211
A
ALA
212
n
224
ALA
212
A
ALA
213
n
225
ALA
213
A
ASN
214
n
226
ASN
214
A
VAL
215
n
227
VAL
215
A
PHE
216
n
228
PHE
216
A
ALA
217
n
229
ALA
217
A
TYR
218
n
230
TYR
218
A
LEU
219
n
231
LEU
219
A
THR
220
n
232
THR
220
A
SER
221
n
233
SER
221
A
ILE
222
n
234
ILE
222
A
TYR
223
n
235
TYR
223
A
LEU
224
n
236
LEU
224
A
LYS
225
n
237
LYS
225
A
THR
226
n
238
THR
226
A
ALA
227
n
239
ALA
227
A
GLU
228
n
240
GLU
228
A
LEU
229
n
241
LEU
229
A
ALA
230
n
242
ALA
230
A
LYS
231
n
243
LYS
231
A
LYS
232
n
244
LYS
232
A
PHE
233
n
245
PHE
233
A
GLY
234
n
246
GLY
234
A
ILE
235
n
247
ILE
235
A
TYR
236
n
248
TYR
236
A
ILE
237
n
249
ILE
237
A
ASN
238
n
250
ASN
238
A
GLU
239
n
251
GLU
239
A
TRP
240
n
252
TRP
240
A
ASP
241
n
253
ASP
241
A
PRO
242
n
254
PRO
242
A
MET
243
n
255
MET
243
A
SER
244
n
256
SER
244
A
GLU
245
n
257
GLU
245
A
GLN
246
n
258
GLN
246
A
ILE
247
n
259
ILE
247
A
THR
248
n
260
THR
248
A
PRO
249
n
261
PRO
249
A
ASN
250
n
262
ASN
250
A
ALA
251
n
263
ALA
251
A
ASN
252
n
264
ASN
252
A
GLY
253
n
265
GLY
253
A
LEU
254
n
266
LEU
254
A
THR
255
n
267
THR
255
A
ASP
256
n
268
ASP
256
A
PRO
257
n
269
PRO
257
A
LYS
258
n
270
LYS
258
A
VAL
259
n
271
VAL
259
A
LYS
260
n
272
LYS
260
A
ASN
261
n
273
ASN
261
A
ALA
262
n
274
ALA
262
A
TRP
263
n
275
TRP
263
A
GLU
264
n
276
GLU
264
A
ILE
265
n
277
ILE
265
A
LEU
266
n
278
LEU
266
A
PRO
267
n
279
PRO
267
A
ARG
268
n
280
ARG
268
A
THR
269
n
281
THR
269
A
LYS
270
n
282
LYS
270
A
PRO
271
n
283
PRO
271
A
SER
272
n
284
SER
272
A
LYS
273
n
285
LYS
273
A
ILE
274
n
286
ILE
274
A
VAL
275
n
287
VAL
275
A
GLU
276
n
288
GLU
276
A
ILE
277
n
289
ILE
277
A
LEU
278
n
290
LEU
278
A
SER
279
n
291
SER
279
A
LYS
280
n
292
LYS
280
A
SER
281
n
293
SER
281
A
ASP
282
n
294
ASP
282
A
ALA
283
n
295
ALA
283
A
LYS
284
n
296
LYS
284
A
ALA
285
n
297
ALA
285
A
VAL
286
n
298
VAL
286
A
MET
287
n
299
MET
287
A
LYS
288
n
300
LYS
288
A
HIS
289
n
301
HIS
289
A
ILE
290
n
302
ILE
290
A
LYS
291
n
303
LYS
291
A
PRO
292
n
304
PRO
292
A
GLN
293
n
305
GLN
293
A
LEU
294
n
306
LEU
294
A
GLN
295
n
307
GLN
295
A
SER
296
n
308
SER
296
A
ARG
297
n
309
ARG
297
A
TYR
298
n
310
TYR
298
A
SER
299
n
311
SER
299
A
GLU
300
n
312
GLU
300
A
SER
301
n
313
SER
301
A
LEU
302
n
314
LEU
302
A
SER
303
n
315
SER
303
A
LYS
304
n
316
LYS
304
A
ASN
305
n
317
ASN
305
A
VAL
306
n
318
VAL
306
A
PHE
307
n
319
PHE
307
A
GLN
308
n
320
GLN
308
A
TYR
309
n
321
TYR
309
A
PHE
310
n
322
PHE
310
A
GLN
311
n
323
GLN
311
A
ASP
312
n
324
ASP
312
A
GLY
313
n
325
GLY
313
A
GLY
314
n
326
GLY
314
A
GLU
315
n
327
GLU
315
A
VAL
316
n
328
VAL
316
A
ALA
317
n
329
ALA
317
A
GLY
318
n
330
GLY
318
A
HIS
319
n
331
HIS
319
A
GLY
320
n
332
GLY
320
A
ILE
321
n
333
ILE
321
A
ASN
322
n
334
ASN
322
A
ASN
323
n
335
ASN
323
A
ALA
324
n
336
ALA
324
A
THR
325
n
337
THR
325
A
VAL
326
n
338
VAL
326
A
GLY
327
n
339
GLY
327
A
ASP
328
n
340
ASP
328
A
LYS
329
n
341
LYS
329
A
HIS
330
n
342
HIS
330
A
SER
331
n
343
SER
331
A
PRO
332
n
344
PRO
332
A
GLU
333
n
345
GLU
333
A
LEU
334
n
346
LEU
334
A
ALA
335
n
347
ALA
335
A
ILE
336
n
348
ILE
336
A
LEU
337
n
349
LEU
337
A
PHE
338
n
350
PHE
338
A
GLU
339
n
351
GLU
339
A
PHE
340
n
352
PHE
340
A
ARG
341
n
353
ARG
341
A
THR
342
n
354
THR
342
A
VAL
343
n
355
VAL
343
A
PRO
344
n
356
PRO
344
A
ASN
345
n
357
ASN
345
A
GLU
346
n
358
GLU
346
A
LEU
347
n
359
LEU
347
A
GLN
348
n
360
GLN
348
A
SER
349
n
361
SER
349
A
TYR
350
n
362
TYR
350
A
LEU
351
n
363
LEU
351
A
PRO
352
n
364
PRO
352
A
LYS
353
n
365
LYS
353
A
THR
354
n
366
THR
354
A
GLY
355
n
367
GLU
355
A
n
368
356
A
n
369
357
A
n
370
358
A
n
371
359
A
n
372
360
A
n
373
361
A
n
374
362
A
n
375
363
A
n
376
364
A
n
377
365
A
n
378
366
A
n
379
367
A
n
380
368
A
n
381
369
A
n
382
370
A
n
383
371
A
n
384
372
A
n
385
373
A
n
386
374
A
n
387
375
A
n
388
376
A
n
389
377
A
n
390
378
A
n
391
379
A
n
392
380
A
n
393
381
A
n
394
382
A
n
395
383
A
n
396
384
A
0.1942
0.2158
0.0935
0.0971
-0.1793
0.0358
0.0018
-0.0030
-0.0021
0.0031
-0.0002
-0.0034
0.0030
-0.0032
-0.0016
-0.0186
-0.0137
0.0191
0.0267
0.0082
-0.0063
refined
34.3198
89.1554
16.5402
X-RAY DIFFRACTION
1.4269
0.3882
-0.3824
0.0000
0.1996
0.0053
0.0008
0.0047
-0.0176
0.0112
0.0021
0.0057
0.0014
-0.0097
-0.0028
-0.0421
-0.0256
-0.0098
0.0494
-0.0139
-0.0118
refined
46.1439
90.0334
6.3373
X-RAY DIFFRACTION
0.3571
-0.0160
0.3797
0.0000
0.2034
0.6518
0.0007
0.0089
-0.0110
-0.0076
0.0012
-0.0005
0.0081
-0.0018
-0.0019
-0.0418
0.0132
-0.0019
0.0527
-0.0312
-0.0091
refined
55.2183
87.9177
-7.2292
X-RAY DIFFRACTION
0.5450
0.0690
0.8880
0.0361
0.3473
0.6086
-0.0006
-0.0110
0.0108
0.0145
-0.0130
-0.0042
-0.0016
-0.0140
0.0136
-0.0550
-0.0236
-0.0165
0.0366
-0.0155
-0.0110
refined
46.4501
98.4860
11.3262
X-RAY DIFFRACTION
0.9327
-0.1936
0.1953
0.0000
0.2044
0.0006
0.0013
-0.0093
-0.0021
-0.0010
-0.0054
-0.0038
0.0001
0.0074
0.0041
-0.0310
-0.0004
-0.0077
0.0475
-0.0195
-0.0185
refined
54.1067
93.1353
9.4907
X-RAY DIFFRACTION
0.1697
0.5307
0.7565
0.1468
-0.2510
0.4696
-0.0010
-0.0010
0.0065
-0.0097
0.0022
-0.0041
-0.0225
-0.0002
-0.0013
-0.0353
0.0019
0.0151
0.0140
0.0034
-0.0056
refined
40.7054
99.0417
2.8214
X-RAY DIFFRACTION
0.6431
-0.3156
-0.0960
0.0000
0.5244
0.2282
0.0014
-0.0084
0.0021
0.0055
0.0073
0.0033
-0.0081
-0.0144
-0.0087
-0.0848
0.0476
-0.0062
0.0855
-0.0585
-0.0024
refined
9.2252
91.2122
13.1717
X-RAY DIFFRACTION
1.1905
-0.1708
0.8192
0.0000
-0.4167
0.0717
0.0043
-0.0303
-0.0015
-0.0067
-0.0071
0.0009
0.0030
-0.0120
0.0028
-0.0875
0.0254
-0.0394
0.0692
-0.0072
0.0032
refined
12.4292
85.5843
3.9803
X-RAY DIFFRACTION
0.7822
0.0555
-0.6829
0.0000
-0.1104
0.4858
-0.0062
0.0058
-0.0017
-0.0073
0.0035
-0.0030
0.0075
0.0058
0.0027
-0.0394
-0.0037
-0.0282
0.0538
0.0126
-0.0203
refined
20.6156
85.8448
-7.1369
X-RAY DIFFRACTION
1.3173
0.3516
-0.2332
0.0000
-0.9208
0.7439
0.0016
-0.0085
-0.0225
0.0086
-0.0110
0.0030
0.0229
-0.0171
0.0094
-0.1163
-0.0269
-0.0416
0.0972
0.0340
0.0085
refined
12.0113
78.2483
4.6769
X-RAY DIFFRACTION
0.7227
0.5824
0.4544
0.0000
-0.1907
0.0393
0.0008
-0.0071
-0.0028
0.0089
-0.0034
0.0020
0.0023
-0.0074
0.0026
-0.0319
-0.0025
-0.0270
0.0450
0.0271
-0.0122
refined
26.2265
86.4324
15.7443
X-RAY DIFFRACTION
0.0349
-0.0574
0.0420
0.0784
0.0299
0.0359
0.0001
-0.0017
0.0023
-0.0029
-0.0012
-0.0003
-0.0053
-0.0017
0.0012
-0.0071
0.0094
0.0085
0.0104
-0.0099
0.0019
refined
32.5336
105.0090
10.5272
X-RAY DIFFRACTION
0.0334
0.0161
0.0189
0.0000
0.0000
0.0053
0.0006
-0.0002
-0.0007
-0.0022
-0.0002
0.0000
0.0012
0.0003
-0.0003
-0.0062
-0.0085
-0.0024
0.0079
-0.0055
-0.0004
refined
33.3948
88.5417
10.3270
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
{ A|0 - A|17 }
X-RAY DIFFRACTION
2
{ A|18 - A|53 }
X-RAY DIFFRACTION
3
{ A|54 - A|78 }
X-RAY DIFFRACTION
4
{ A|79 - A|116 }
X-RAY DIFFRACTION
5
{ A|117 - A|143 }
X-RAY DIFFRACTION
6
{ A|144 - A|170 }
X-RAY DIFFRACTION
7
{ A|171 - A|206 }
X-RAY DIFFRACTION
8
{ A|207 - A|236 }
X-RAY DIFFRACTION
9
{ A|237 - A|269 }
X-RAY DIFFRACTION
10
{ A|270 - A|319 }
X-RAY DIFFRACTION
11
{ A|320 - A|343 }
X-RAY DIFFRACTION
12
{ A|344 - A|355 }
X-RAY DIFFRACTION
13
{ A|401 - A|401 }
author_and_software_defined_assembly
PISA
1
monomeric
A
GLU
16
A
OE2
GLU
28
1_555
A
MG
404
E
MG
MG
1_555
A
ADP
401
B
O3B
ADP
1_555
93.0
A
GLU
16
A
OE2
GLU
28
1_555
A
MG
404
E
MG
MG
1_555
A
ADP
401
B
O3A
ADP
1_555
93.6
A
ADP
401
B
O3B
ADP
1_555
A
MG
404
E
MG
MG
1_555
A
ADP
401
B
O3A
ADP
1_555
55.1
A
GLN
162
A
OE1
GLN
174
1_555
A
MG
403
D
MG
MG
1_555
A
GLU
339
A
OE2
GLU
351
1_555
96.2
A
GLN
162
A
OE1
GLN
174
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
741
J
O
HOH
1_555
132.7
A
GLU
339
A
OE2
GLU
351
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
741
J
O
HOH
1_555
111.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CB
GLU
355
A
CB
GLU
367
1
Y
1
A
CG
GLU
355
A
CG
GLU
367
1
Y
1
A
CD
GLU
355
A
CD
GLU
367
1
Y
1
A
OE1
GLU
355
A
OE1
GLU
367
1
Y
1
A
OE2
GLU
355
A
OE2
GLU
367
1
Y
1
A
ASN
-11
A
ASN
1
1
Y
1
A
ALA
-10
A
ALA
2
1
Y
1
A
GLN
-9
A
GLN
3
1
Y
1
A
PRO
-8
A
PRO
4
1
Y
1
A
ASN
-7
A
ASN
5
1
Y
1
A
LEU
-6
A
LEU
6
1
Y
1
A
GLY
-5
A
GLY
7
1
Y
1
A
ARG
-4
A
ARG
8
1
Y
1
A
SER
-3
A
SER
9
1
Y
1
A
THR
-2
A
THR
10
1
Y
1
A
LYS
-1
A
LYS
11
1
Y
1
A
SER
356
A
SER
368
1
Y
1
A
THR
357
A
THR
369
1
Y
1
A
THR
358
A
THR
370
1
Y
1
A
LYS
359
A
LYS
371
1
Y
1
A
SER
360
A
SER
372
1
Y
1
A
GLU
361
A
GLU
373
1
Y
1
A
VAL
362
A
VAL
374
1
Y
1
A
LYS
363
A
LYS
375
1
Y
1
A
LEU
364
A
LEU
376
1
Y
1
A
LEU
365
A
LEU
377
1
Y
1
A
ASP
366
A
ASP
378
1
Y
1
A
GLN
367
A
GLN
379
1
Y
1
A
PHE
368
A
PHE
380
1
Y
1
A
ASP
369
A
ASP
381
1
Y
1
A
PRO
370
A
PRO
382
1
Y
1
A
MET
371
A
MET
383
1
Y
1
A
LYS
372
A
LYS
384
1
Y
1
A
ARG
373
A
ARG
385
1
Y
1
A
LYS
374
A
LYS
386
1
Y
1
A
THR
375
A
THR
387
1
Y
1
A
VAL
376
A
VAL
388
1
Y
1
A
ILE
377
A
ILE
389
1
Y
1
A
GLN
378
A
GLN
390
1
Y
1
A
GLN
379
A
GLN
391
1
Y
1
A
VAL
380
A
VAL
392
1
Y
1
A
GLU
381
A
GLU
393
1
Y
1
A
SER
382
A
SER
394
1
Y
1
A
LEU
383
A
LEU
395
1
Y
1
A
VAL
384
A
VAL
396
1
Y
1
A
LYS
10
-132.94
-155.76
1
A
ASP
51
-118.46
-94.48
1
A
SER
175
56.93
19.65
1
A
ASN
238
51.20
-114.00
1
A
GLU
264
72.46
-59.01
1
A
ALA
317
-151.60
73.19
37.25
-2.28820
0.00000
0.00000
-2.28820
0.00000
4.57640
0.948
0.933
0.196
0.174
0.175
2.25
40.62
1019
28721
28721
3.550
92.9
0.185
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
PDB ENTRY 4DTF
Engh & Huber
0.26
2.25
40.62
470
3282
55
0
2757
0.010
2888
HARMONIC
2.000
1.08
3932
HARMONIC
2.000
989
SINUSOIDAL
2.000
80
HARMONIC
2.000
422
HARMONIC
5.000
2888
HARMONIC
20.000
0
SEMIHARMONIC
5.000
3.23
19.17
0
385
SEMIHARMONIC
5.00
0
3579
SEMIHARMONIC
4.00
0.2235
0.2080
0.2085
2.33
107
2954
3061
14
3.50
92.92
39.49
2.250
50.000
4E1C
28824
0.000
0.05300
1
21.4000
4.200
100.0
0.43600
2.25
2.30
3.700
1
4.00
93.2
data collection
MAR345dtb
phasing
MOLREP
refinement
BUSTER
2.11.2
data reduction
HKL-3000
data scaling
XSCALE
Structure of a VgrG Vibrio cholerae toxin ACD domain in complex with ADP and Mg++
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
A
PRO
60
A
PRO
72
HELX_P
A
GLN
64
A
GLN
76
5
1
5
A
ASP
88
A
ASP
100
HELX_P
A
SER
113
A
SER
125
1
2
26
A
THR
157
A
THR
169
HELX_P
A
SER
159
A
SER
171
5
3
3
A
LYS
170
A
LYS
182
HELX_P
A
PHE
172
A
PHE
184
5
4
3
A
THR
177
A
THR
189
HELX_P
A
SER
185
A
SER
197
1
5
9
A
SER
192
A
SER
204
HELX_P
A
THR
201
A
THR
213
1
6
10
A
ASP
208
A
ASP
220
HELX_P
A
GLY
234
A
GLY
246
1
7
27
A
ASP
241
A
ASP
253
HELX_P
A
GLN
246
A
GLN
258
5
8
6
A
ASP
256
A
ASP
268
HELX_P
A
GLU
264
A
GLU
276
1
9
9
A
LYS
270
A
LYS
282
HELX_P
A
LEU
278
A
LEU
290
5
10
9
A
SER
279
A
SER
291
HELX_P
A
SER
296
A
SER
308
1
11
18
A
SER
299
A
SER
311
HELX_P
A
ASP
312
A
ASP
324
1
12
14
A
PRO
344
A
PRO
356
HELX_P
A
LEU
351
A
LEU
363
5
13
8
metalc
2.446
A
GLU
16
A
OE2
GLU
28
1_555
A
MG
404
E
MG
MG
1_555
metalc
2.568
A
GLN
162
A
OE1
GLN
174
1_555
A
MG
403
D
MG
MG
1_555
metalc
2.597
A
GLU
339
A
OE2
GLU
351
1_555
A
MG
403
D
MG
MG
1_555
metalc
2.606
A
ADP
401
B
O3B
ADP
1_555
A
MG
404
E
MG
MG
1_555
metalc
2.903
A
ADP
401
B
O3A
ADP
1_555
A
MG
404
E
MG
MG
1_555
metalc
2.714
A
MG
403
D
MG
MG
1_555
A
HOH
741
J
O
HOH
1_555
TOXIN
Alpha Beta protein, G-actin cross-linking Toxin, G-actin, TOXIN
Q9KS45_VIBCH
UNP
1
716
Q9KS45
NAQPNLGRSTKATPDFPTHFPKSSIGIENELAGLVVAMPANSAQKFGYVKSAQGDALFMLTKDMNQGSYQRPPSLQDGKN
YQNWQTHTVELVSYPCEMDDKAAVETRKQAMLWLATHFTTHIDQSNHQPLAPIQSEDGRFVIEITNAKHVIAAGNGISAE
SQGQTITMTPSGQQATVGVAAKGFGTSATPELRLLESAPWYQKSLKSQFASLTSAENLDDKELAANVFAYLTSIYLKTAE
LAKKFGIYINEWDPMSEQITPNANGLTDPKVKNAWEILPRTKPSKIVEILSKSDAKAVMKHIKPQLQSRYSESLSKNVFQ
YFQDGGEVAGHGINNATVGDKHSPELAILFEFRTVPNELQSYLPKTESTTKSEVKLLDQFDPMKRKTVIQQVESLV
717
1111
4E1C
-10
384
Q9KS45
A
1
2
396
BINDING SITE FOR RESIDUE ADP A 401
A
ADP
401
Software
17
BINDING SITE FOR RESIDUE GOL A 402
A
GOL
402
Software
7
BINDING SITE FOR RESIDUE MG A 403
A
MG
403
Software
4
BINDING SITE FOR RESIDUE MG A 404
A
MG
404
Software
3
BINDING SITE FOR RESIDUE SO4 A 405
A
SO4
405
Software
6
BINDING SITE FOR RESIDUE SO4 A 406
A
SO4
406
Software
7
BINDING SITE FOR RESIDUE SO4 A 407
A
SO4
407
Software
7
BINDING SITE FOR RESIDUE SO4 A 408
A
SO4
408
Software
5
A
PHE
4
A
PHE
16
17
1_555
A
SER
12
A
SER
24
17
1_555
A
GLY
14
A
GLY
26
17
1_555
A
ILE
15
A
ILE
27
17
1_555
A
GLU
16
A
GLU
28
17
1_555
A
VAL
80
A
VAL
92
17
1_555
A
SER
81
A
SER
93
17
1_555
A
PRO
83
A
PRO
95
17
1_555
A
THR
164
A
THR
176
17
1_555
A
ARG
268
A
ARG
280
17
1_555
A
ILE
321
A
ILE
333
17
1_555
A
LEU
337
A
LEU
349
17
1_555
A
MG
404
E
MG
17
1_555
A
HOH
759
J
HOH
17
1_555
A
HOH
834
J
HOH
17
1_555
A
HOH
855
J
HOH
17
1_555
A
HOH
896
J
HOH
17
1_555
A
LYS
50
A
LYS
62
7
1_555
A
ASN
53
A
ASN
65
7
1_555
A
GLY
55
A
GLY
67
7
8_664
A
SER
56
A
SER
68
7
8_664
A
HIS
75
A
HIS
87
7
1_555
A
HOH
585
J
HOH
7
1_555
A
HOH
589
J
HOH
7
1_555
A
GLU
16
A
GLU
28
4
1_555
A
GLN
162
A
GLN
174
4
1_555
A
GLU
339
A
GLU
351
4
1_555
A
HOH
741
J
HOH
4
1_555
A
GLU
16
A
GLU
28
3
1_555
A
GLU
78
A
GLU
90
3
1_555
A
ADP
401
B
ADP
3
1_555
A
PRO
257
A
PRO
269
6
1_555
A
LYS
260
A
LYS
272
6
1_555
A
ARG
341
A
ARG
353
6
1_555
A
HOH
711
J
HOH
6
1_555
A
HOH
741
J
HOH
6
1_555
A
HOH
754
J
HOH
6
1_555
A
GLY
142
A
GLY
154
7
1_555
A
ASN
143
A
ASN
155
7
1_555
A
GLY
144
A
GLY
156
7
1_555
A
ILE
145
A
ILE
157
7
1_555
A
SER
146
A
SER
158
7
1_555
A
HOH
609
J
HOH
7
1_555
A
HOH
944
J
HOH
7
1_555
A
TRP
101
A
TRP
113
7
1_555
A
HIS
105
A
HIS
117
7
1_555
A
ILE
121
A
ILE
133
7
1_555
A
GLU
124
A
GLU
136
7
1_555
A
HOH
579
J
HOH
7
1_555
A
HOH
636
J
HOH
7
1_555
A
HOH
854
J
HOH
7
1_555
A
ALA
31
A
ALA
43
5
1_555
A
GLN
32
A
GLN
44
5
1_555
A
LYS
33
A
LYS
45
5
1_555
A
HOH
904
J
HOH
5
1_555
A
HOH
934
J
HOH
5
1_555
95
P 43 2 2