0.007789
0.000000
0.000000
0.000000
0.007789
0.000000
0.000000
0.000000
0.013034
0.00000
0.00000
0.00000
Durand, E.
Audoly, G.
Derrez, E.
Spinelli, S.
Ortiz-Lombardia, M.
Cascales, E.
Raoult, D.
Cambillau, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
128.390
128.390
76.720
C10 H15 N5 O10 P2
427.201
n
ADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mn 2
54.938
MANGANESE (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
N
O
N
15
R
C
N
16
N
O
N
17
R
C
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
Y
22
N
C
N
23
N
N
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
C
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
N
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
R
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
S
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
N
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
O
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
Y
184
N
C
Y
185
N
N
Y
186
N
C
Y
187
N
C
Y
188
N
N
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
S
C
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
N
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
C
N
278
N
S
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
MN
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
O
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
S
N
348
N
O
N
349
N
O
N
350
N
O
N
351
N
O
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
R
C
N
357
N
O
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
N
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
N
407
N
O
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
Y
30
N
sing
Y
31
N
sing
Y
32
N
doub
N
33
N
sing
Y
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
doub
N
39
N
sing
N
40
N
sing
Y
41
N
sing
Y
42
N
doub
N
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
Y
184
N
sing
Y
185
N
doub
Y
186
N
doub
N
187
N
sing
Y
188
N
sing
N
189
N
sing
Y
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
Y
292
N
doub
Y
293
N
sing
Y
294
N
sing
N
295
N
sing
Y
296
N
doub
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
Y
371
N
sing
N
372
N
sing
Y
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
Y
393
N
doub
Y
394
N
sing
Y
395
N
sing
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
US
J.Biol.Chem.
JBCHA3
0071
1083-351X
Structure and functional characterization of the Vibrio cholerae toxin
from the VgrG/MARTX family.
2012
10.2210/pdb4e1d/pdb
pdb_00004e1d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
IMAGE PLATE
2012-03-04
MAR scanner 345 mm plate
MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
BRUKER AXS MICROSTAR
43742.215
VgrG protein
Vibrio cholerae VgrG1 ACD (unp residues 716-1111)
1
man
polymer
427.201
ADENOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
54.938
MANGANESE (II) ION
2
syn
non-polymer
96.063
SULFATE ION
3
syn
non-polymer
18.015
water
136
nat
water
no
no
NAQPNLGRSTKATPDFPTHFPKSSIGIENELAGLVVAMPANSAQKFGYVKSAQGDALFMLTKDMNQGSYQRPPSLQDGKN
YQNWQTHTVELVSYPCEMDDKAAVETRKQAMLWLATHFTTHIDQSNHQPLAPIQSEDGRFVIEITNAKHVIAAGNGISAE
SQGQTITMTPSGQQATVGVAAKGFGTSATPELRLLESAPWYQKSLKSQFASLTSAENLDDKELAANVFAYLTSIYLKTAE
LAKKFGIYINEWDPMSEQITPNANGLTDPKVKNAWEILPRTKPSKIVEILSKSDAKAVMKHIKPQLQSRYSESLSKNVFQ
YFQDGGEVAGHGINNATVGDKHSPELAILFEFRTVPNELQSYLPKTESTTKSEVKLLDQFDPMKRKTVIQQVESLV
NAQPNLGRSTKATPDFPTHFPKSSIGIENELAGLVVAMPANSAQKFGYVKSAQGDALFMLTKDMNQGSYQRPPSLQDGKN
YQNWQTHTVELVSYPCEMDDKAAVETRKQAMLWLATHFTTHIDQSNHQPLAPIQSEDGRFVIEITNAKHVIAAGNGISAE
SQGQTITMTPSGQQATVGVAAKGFGTSATPELRLLESAPWYQKSLKSQFASLTSAENLDDKELAANVFAYLTSIYLKTAE
LAKKFGIYINEWDPMSEQITPNANGLTDPKVKNAWEILPRTKPSKIVEILSKSDAKAVMKHIKPQLQSRYSESLSKNVFQ
YFQDGGEVAGHGINNATVGDKHSPELAILFEFRTVPNELQSYLPKTESTTKSEVKLLDQFDPMKRKTVIQQVESLV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
O395
sample
VC_1416, VgrG1
666
Vibrio cholerae
511693
Escherichia coli
BL21
pETG20A
1
3.62
66.01
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-08-29
1
1
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-03-06
REL
REL
ADP
ADENOSINE-5'-DIPHOSPHATE
MN
MANGANESE (II) ION
SO4
SULFATE ION
HOH
water
4E1C
PDB ENTRY 4E1C
PDB
experimental model
ADP
401
2
ADP
ADP
401
A
MN
402
3
MN
MN
402
A
MN
403
3
MN
MN
403
A
SO4
404
4
SO4
SO4
404
A
SO4
405
4
SO4
SO4
405
A
SO4
406
4
SO4
SO4
406
A
HOH
501
5
HOH
HOH
501
A
HOH
502
5
HOH
HOH
502
A
HOH
503
5
HOH
HOH
503
A
HOH
504
5
HOH
HOH
504
A
HOH
505
5
HOH
HOH
505
A
HOH
506
5
HOH
HOH
506
A
HOH
507
5
HOH
HOH
507
A
HOH
508
5
HOH
HOH
508
A
HOH
509
5
HOH
HOH
509
A
HOH
510
5
HOH
HOH
510
A
HOH
511
5
HOH
HOH
511
A
HOH
512
5
HOH
HOH
512
A
HOH
513
5
HOH
HOH
513
A
HOH
514
5
HOH
HOH
514
A
HOH
515
5
HOH
HOH
515
A
HOH
516
5
HOH
HOH
516
A
HOH
517
5
HOH
HOH
517
A
HOH
518
5
HOH
HOH
518
A
HOH
519
5
HOH
HOH
519
A
HOH
520
5
HOH
HOH
520
A
HOH
521
5
HOH
HOH
521
A
HOH
522
5
HOH
HOH
522
A
HOH
523
5
HOH
HOH
523
A
HOH
524
5
HOH
HOH
524
A
HOH
525
5
HOH
HOH
525
A
HOH
526
5
HOH
HOH
526
A
HOH
527
5
HOH
HOH
527
A
HOH
528
5
HOH
HOH
528
A
HOH
529
5
HOH
HOH
529
A
HOH
530
5
HOH
HOH
530
A
HOH
531
5
HOH
HOH
531
A
HOH
532
5
HOH
HOH
532
A
HOH
533
5
HOH
HOH
533
A
HOH
534
5
HOH
HOH
534
A
HOH
535
5
HOH
HOH
535
A
HOH
536
5
HOH
HOH
536
A
HOH
537
5
HOH
HOH
537
A
HOH
538
5
HOH
HOH
538
A
HOH
540
5
HOH
HOH
539
A
HOH
541
5
HOH
HOH
540
A
HOH
542
5
HOH
HOH
541
A
HOH
543
5
HOH
HOH
542
A
HOH
544
5
HOH
HOH
543
A
HOH
545
5
HOH
HOH
544
A
HOH
546
5
HOH
HOH
545
A
HOH
547
5
HOH
HOH
546
A
HOH
548
5
HOH
HOH
547
A
HOH
549
5
HOH
HOH
548
A
HOH
550
5
HOH
HOH
549
A
HOH
551
5
HOH
HOH
550
A
HOH
552
5
HOH
HOH
551
A
HOH
553
5
HOH
HOH
552
A
HOH
554
5
HOH
HOH
553
A
HOH
555
5
HOH
HOH
554
A
HOH
556
5
HOH
HOH
555
A
HOH
557
5
HOH
HOH
556
A
HOH
558
5
HOH
HOH
557
A
HOH
559
5
HOH
HOH
558
A
HOH
560
5
HOH
HOH
559
A
HOH
561
5
HOH
HOH
560
A
HOH
562
5
HOH
HOH
561
A
HOH
563
5
HOH
HOH
562
A
HOH
564
5
HOH
HOH
563
A
HOH
565
5
HOH
HOH
564
A
HOH
567
5
HOH
HOH
565
A
HOH
568
5
HOH
HOH
566
A
HOH
570
5
HOH
HOH
567
A
HOH
572
5
HOH
HOH
568
A
HOH
573
5
HOH
HOH
569
A
HOH
574
5
HOH
HOH
570
A
HOH
575
5
HOH
HOH
571
A
HOH
576
5
HOH
HOH
572
A
HOH
578
5
HOH
HOH
573
A
HOH
579
5
HOH
HOH
574
A
HOH
580
5
HOH
HOH
575
A
HOH
581
5
HOH
HOH
576
A
HOH
582
5
HOH
HOH
577
A
HOH
583
5
HOH
HOH
578
A
HOH
584
5
HOH
HOH
579
A
HOH
585
5
HOH
HOH
580
A
HOH
586
5
HOH
HOH
581
A
HOH
588
5
HOH
HOH
582
A
HOH
589
5
HOH
HOH
583
A
HOH
590
5
HOH
HOH
584
A
HOH
592
5
HOH
HOH
585
A
HOH
593
5
HOH
HOH
586
A
HOH
594
5
HOH
HOH
587
A
HOH
595
5
HOH
HOH
588
A
HOH
596
5
HOH
HOH
589
A
HOH
597
5
HOH
HOH
590
A
HOH
598
5
HOH
HOH
591
A
HOH
599
5
HOH
HOH
592
A
HOH
600
5
HOH
HOH
593
A
HOH
601
5
HOH
HOH
594
A
HOH
602
5
HOH
HOH
595
A
HOH
603
5
HOH
HOH
596
A
HOH
604
5
HOH
HOH
597
A
HOH
605
5
HOH
HOH
598
A
HOH
606
5
HOH
HOH
599
A
HOH
608
5
HOH
HOH
600
A
HOH
609
5
HOH
HOH
601
A
HOH
610
5
HOH
HOH
602
A
HOH
613
5
HOH
HOH
603
A
HOH
615
5
HOH
HOH
604
A
HOH
616
5
HOH
HOH
605
A
HOH
617
5
HOH
HOH
606
A
HOH
619
5
HOH
HOH
607
A
HOH
620
5
HOH
HOH
608
A
HOH
621
5
HOH
HOH
609
A
HOH
622
5
HOH
HOH
610
A
HOH
623
5
HOH
HOH
611
A
HOH
624
5
HOH
HOH
612
A
HOH
625
5
HOH
HOH
613
A
HOH
626
5
HOH
HOH
614
A
HOH
627
5
HOH
HOH
615
A
HOH
629
5
HOH
HOH
616
A
HOH
631
5
HOH
HOH
617
A
HOH
632
5
HOH
HOH
618
A
HOH
633
5
HOH
HOH
619
A
HOH
634
5
HOH
HOH
620
A
HOH
638
5
HOH
HOH
621
A
HOH
639
5
HOH
HOH
622
A
HOH
640
5
HOH
HOH
623
A
HOH
641
5
HOH
HOH
624
A
HOH
642
5
HOH
HOH
625
A
HOH
643
5
HOH
HOH
626
A
HOH
645
5
HOH
HOH
627
A
HOH
646
5
HOH
HOH
628
A
HOH
647
5
HOH
HOH
629
A
HOH
648
5
HOH
HOH
630
A
HOH
649
5
HOH
HOH
631
A
HOH
650
5
HOH
HOH
632
A
HOH
651
5
HOH
HOH
633
A
HOH
652
5
HOH
HOH
634
A
HOH
653
5
HOH
HOH
635
A
HOH
655
5
HOH
HOH
636
A
n
1
-11
A
n
2
-10
A
n
3
-9
A
n
4
-8
A
n
5
-7
A
n
6
-6
A
n
7
-5
A
n
8
-4
A
n
9
-3
A
n
10
-2
A
n
11
-1
A
ALA
0
n
12
ALA
0
A
THR
1
n
13
THR
1
A
PRO
2
n
14
PRO
2
A
ASP
3
n
15
ASP
3
A
PHE
4
n
16
PHE
4
A
PRO
5
n
17
PRO
5
A
THR
6
n
18
THR
6
A
HIS
7
n
19
HIS
7
A
PHE
8
n
20
PHE
8
A
PRO
9
n
21
PRO
9
A
LYS
10
n
22
LYS
10
A
SER
11
n
23
SER
11
A
SER
12
n
24
SER
12
A
ILE
13
n
25
ILE
13
A
GLY
14
n
26
GLY
14
A
ILE
15
n
27
ILE
15
A
GLU
16
n
28
GLU
16
A
ASN
17
n
29
ASN
17
A
GLU
18
n
30
GLU
18
A
LEU
19
n
31
LEU
19
A
ALA
20
n
32
ALA
20
A
GLY
21
n
33
GLY
21
A
LEU
22
n
34
LEU
22
A
VAL
23
n
35
VAL
23
A
VAL
24
n
36
VAL
24
A
ALA
25
n
37
ALA
25
A
MET
26
n
38
MET
26
A
PRO
27
n
39
PRO
27
A
ALA
28
n
40
ALA
28
A
ASN
29
n
41
ASN
29
A
SER
30
n
42
SER
30
A
ALA
31
n
43
ALA
31
A
GLN
32
n
44
GLN
32
A
LYS
33
n
45
LYS
33
A
PHE
34
n
46
PHE
34
A
GLY
35
n
47
GLY
35
A
TYR
36
n
48
TYR
36
A
VAL
37
n
49
VAL
37
A
LYS
38
n
50
LYS
38
A
SER
39
n
51
SER
39
A
ALA
40
n
52
ALA
40
A
GLN
41
n
53
GLN
41
A
GLY
42
n
54
GLY
42
A
ASP
43
n
55
ASP
43
A
ALA
44
n
56
ALA
44
A
LEU
45
n
57
LEU
45
A
PHE
46
n
58
PHE
46
A
MET
47
n
59
MET
47
A
LEU
48
n
60
LEU
48
A
THR
49
n
61
THR
49
A
LYS
50
n
62
LYS
50
A
ASP
51
n
63
ASP
51
A
MET
52
n
64
MET
52
A
ASN
53
n
65
ASN
53
A
GLN
54
n
66
GLN
54
A
GLY
55
n
67
GLY
55
A
SER
56
n
68
SER
56
A
TYR
57
n
69
TYR
57
A
GLN
58
n
70
GLN
58
A
ARG
59
n
71
ARG
59
A
PRO
60
n
72
PRO
60
A
PRO
61
n
73
PRO
61
A
SER
62
n
74
SER
62
A
LEU
63
n
75
LEU
63
A
GLN
64
n
76
GLN
64
A
ASP
65
n
77
ASP
65
A
GLY
66
n
78
GLY
66
A
LYS
67
n
79
LYS
67
A
ASN
68
n
80
ASN
68
A
TYR
69
n
81
TYR
69
A
GLN
70
n
82
GLN
70
A
ASN
71
n
83
ASN
71
A
TRP
72
n
84
TRP
72
A
GLN
73
n
85
GLN
73
A
THR
74
n
86
THR
74
A
HIS
75
n
87
HIS
75
A
THR
76
n
88
THR
76
A
VAL
77
n
89
VAL
77
A
GLU
78
n
90
GLU
78
A
LEU
79
n
91
LEU
79
A
VAL
80
n
92
VAL
80
A
SER
81
n
93
SER
81
A
TYR
82
n
94
TYR
82
A
PRO
83
n
95
PRO
83
A
CYS
84
n
96
CYS
84
A
GLU
85
n
97
GLU
85
A
MET
86
n
98
MET
86
A
ASP
87
n
99
ASP
87
A
ASP
88
n
100
ASP
88
A
LYS
89
n
101
LYS
89
A
ALA
90
n
102
ALA
90
A
ALA
91
n
103
ALA
91
A
VAL
92
n
104
VAL
92
A
GLU
93
n
105
GLU
93
A
THR
94
n
106
THR
94
A
ARG
95
n
107
ARG
95
A
LYS
96
n
108
LYS
96
A
GLN
97
n
109
GLN
97
A
ALA
98
n
110
ALA
98
A
MET
99
n
111
MET
99
A
LEU
100
n
112
LEU
100
A
TRP
101
n
113
TRP
101
A
LEU
102
n
114
LEU
102
A
ALA
103
n
115
ALA
103
A
THR
104
n
116
THR
104
A
HIS
105
n
117
HIS
105
A
PHE
106
n
118
PHE
106
A
THR
107
n
119
THR
107
A
THR
108
n
120
THR
108
A
HIS
109
n
121
HIS
109
A
ILE
110
n
122
ILE
110
A
ASP
111
n
123
ASP
111
A
GLN
112
n
124
GLN
112
A
SER
113
n
125
SER
113
A
ASN
114
n
126
ASN
114
A
HIS
115
n
127
HIS
115
A
GLN
116
n
128
GLN
116
A
PRO
117
n
129
PRO
117
A
LEU
118
n
130
LEU
118
A
ALA
119
n
131
ALA
119
A
PRO
120
n
132
PRO
120
A
ILE
121
n
133
ILE
121
A
GLN
122
n
134
GLN
122
A
SER
123
n
135
SER
123
A
GLU
124
n
136
GLU
124
A
ASP
125
n
137
ASP
125
A
GLY
126
n
138
GLY
126
A
ARG
127
n
139
ARG
127
A
PHE
128
n
140
PHE
128
A
VAL
129
n
141
VAL
129
A
ILE
130
n
142
ILE
130
A
GLU
131
n
143
GLU
131
A
ILE
132
n
144
ILE
132
A
THR
133
n
145
THR
133
A
ASN
134
n
146
ASN
134
A
ALA
135
n
147
ALA
135
A
LYS
136
n
148
LYS
136
A
HIS
137
n
149
HIS
137
A
VAL
138
n
150
VAL
138
A
ILE
139
n
151
ILE
139
A
ALA
140
n
152
ALA
140
A
ALA
141
n
153
ALA
141
A
GLY
142
n
154
GLY
142
A
ASN
143
n
155
ASN
143
A
GLY
144
n
156
GLY
144
A
ILE
145
n
157
ILE
145
A
SER
146
n
158
SER
146
A
ALA
147
n
159
ALA
147
A
GLU
148
n
160
GLU
148
A
SER
149
n
161
SER
149
A
GLN
150
n
162
GLN
150
A
GLY
151
n
163
GLY
151
A
GLN
152
n
164
GLN
152
A
THR
153
n
165
THR
153
A
ILE
154
n
166
ILE
154
A
THR
155
n
167
THR
155
A
MET
156
n
168
MET
156
A
THR
157
n
169
THR
157
A
PRO
158
n
170
PRO
158
A
SER
159
n
171
SER
159
A
GLY
160
n
172
GLY
160
A
GLN
161
n
173
GLN
161
A
GLN
162
n
174
GLN
162
A
ALA
163
n
175
ALA
163
A
THR
164
n
176
THR
164
A
VAL
165
n
177
VAL
165
A
GLY
166
n
178
GLY
166
A
VAL
167
n
179
VAL
167
A
ALA
168
n
180
ALA
168
A
ALA
169
n
181
ALA
169
A
LYS
170
n
182
LYS
170
A
GLY
171
n
183
GLY
171
A
PHE
172
n
184
PHE
172
A
GLY
173
n
185
GLY
173
A
THR
174
n
186
THR
174
A
SER
175
n
187
SER
175
A
ALA
176
n
188
ALA
176
A
THR
177
n
189
THR
177
A
PRO
178
n
190
PRO
178
A
GLU
179
n
191
GLU
179
A
LEU
180
n
192
LEU
180
A
ARG
181
n
193
ARG
181
A
LEU
182
n
194
LEU
182
A
LEU
183
n
195
LEU
183
A
GLU
184
n
196
GLU
184
A
SER
185
n
197
SER
185
A
ALA
186
n
198
ALA
186
A
PRO
187
n
199
PRO
187
A
TRP
188
n
200
TRP
188
A
TYR
189
n
201
TYR
189
A
GLN
190
n
202
GLN
190
A
LYS
191
n
203
LYS
191
A
SER
192
n
204
SER
192
A
LEU
193
n
205
LEU
193
A
LYS
194
n
206
LYS
194
A
SER
195
n
207
SER
195
A
GLN
196
n
208
GLN
196
A
PHE
197
n
209
PHE
197
A
ALA
198
n
210
ALA
198
A
SER
199
n
211
SER
199
A
LEU
200
n
212
LEU
200
A
THR
201
n
213
THR
201
A
SER
202
n
214
SER
202
A
ALA
203
n
215
ALA
203
A
GLU
204
n
216
GLU
204
A
ASN
205
n
217
ASN
205
A
LEU
206
n
218
LEU
206
A
ASP
207
n
219
ASP
207
A
ASP
208
n
220
ASP
208
A
LYS
209
n
221
LYS
209
A
GLU
210
n
222
GLU
210
A
LEU
211
n
223
LEU
211
A
ALA
212
n
224
ALA
212
A
ALA
213
n
225
ALA
213
A
ASN
214
n
226
ASN
214
A
VAL
215
n
227
VAL
215
A
PHE
216
n
228
PHE
216
A
ALA
217
n
229
ALA
217
A
TYR
218
n
230
TYR
218
A
LEU
219
n
231
LEU
219
A
THR
220
n
232
THR
220
A
SER
221
n
233
SER
221
A
ILE
222
n
234
ILE
222
A
TYR
223
n
235
TYR
223
A
LEU
224
n
236
LEU
224
A
LYS
225
n
237
LYS
225
A
THR
226
n
238
THR
226
A
ALA
227
n
239
ALA
227
A
GLU
228
n
240
GLU
228
A
LEU
229
n
241
LEU
229
A
ALA
230
n
242
ALA
230
A
LYS
231
n
243
LYS
231
A
LYS
232
n
244
LYS
232
A
PHE
233
n
245
PHE
233
A
GLY
234
n
246
GLY
234
A
ILE
235
n
247
ILE
235
A
TYR
236
n
248
TYR
236
A
ILE
237
n
249
ILE
237
A
ASN
238
n
250
ASN
238
A
GLU
239
n
251
GLU
239
A
TRP
240
n
252
TRP
240
A
ASP
241
n
253
ASP
241
A
PRO
242
n
254
PRO
242
A
MET
243
n
255
MET
243
A
SER
244
n
256
SER
244
A
GLU
245
n
257
GLU
245
A
GLN
246
n
258
GLN
246
A
ILE
247
n
259
ILE
247
A
THR
248
n
260
THR
248
A
PRO
249
n
261
PRO
249
A
ASN
250
n
262
ASN
250
A
ALA
251
n
263
ALA
251
A
ASN
252
n
264
ASN
252
A
GLY
253
n
265
GLY
253
A
LEU
254
n
266
LEU
254
A
THR
255
n
267
THR
255
A
ASP
256
n
268
ASP
256
A
PRO
257
n
269
PRO
257
A
LYS
258
n
270
LYS
258
A
VAL
259
n
271
VAL
259
A
LYS
260
n
272
LYS
260
A
ASN
261
n
273
ASN
261
A
ALA
262
n
274
ALA
262
A
TRP
263
n
275
TRP
263
A
GLU
264
n
276
GLU
264
A
ILE
265
n
277
ILE
265
A
LEU
266
n
278
LEU
266
A
PRO
267
n
279
PRO
267
A
ARG
268
n
280
ARG
268
A
THR
269
n
281
THR
269
A
LYS
270
n
282
LYS
270
A
PRO
271
n
283
PRO
271
A
SER
272
n
284
SER
272
A
LYS
273
n
285
LYS
273
A
ILE
274
n
286
ILE
274
A
VAL
275
n
287
VAL
275
A
GLU
276
n
288
GLU
276
A
ILE
277
n
289
ILE
277
A
LEU
278
n
290
LEU
278
A
SER
279
n
291
SER
279
A
LYS
280
n
292
LYS
280
A
SER
281
n
293
SER
281
A
ASP
282
n
294
ASP
282
A
ALA
283
n
295
ALA
283
A
LYS
284
n
296
LYS
284
A
ALA
285
n
297
ALA
285
A
VAL
286
n
298
VAL
286
A
MET
287
n
299
MET
287
A
LYS
288
n
300
LYS
288
A
HIS
289
n
301
HIS
289
A
ILE
290
n
302
ILE
290
A
LYS
291
n
303
LYS
291
A
PRO
292
n
304
PRO
292
A
GLN
293
n
305
GLN
293
A
LEU
294
n
306
LEU
294
A
GLN
295
n
307
GLN
295
A
SER
296
n
308
SER
296
A
ARG
297
n
309
ARG
297
A
TYR
298
n
310
TYR
298
A
SER
299
n
311
SER
299
A
GLU
300
n
312
GLU
300
A
SER
301
n
313
SER
301
A
LEU
302
n
314
LEU
302
A
SER
303
n
315
SER
303
A
LYS
304
n
316
LYS
304
A
ASN
305
n
317
ASN
305
A
VAL
306
n
318
VAL
306
A
PHE
307
n
319
PHE
307
A
GLN
308
n
320
GLN
308
A
TYR
309
n
321
TYR
309
A
PHE
310
n
322
PHE
310
A
GLN
311
n
323
GLN
311
A
ASP
312
n
324
ASP
312
A
GLY
313
n
325
GLY
313
A
GLY
314
n
326
GLY
314
A
GLU
315
n
327
GLU
315
A
VAL
316
n
328
VAL
316
A
ALA
317
n
329
ALA
317
A
GLY
318
n
330
GLY
318
A
HIS
319
n
331
HIS
319
A
GLY
320
n
332
GLY
320
A
ILE
321
n
333
ILE
321
A
ASN
322
n
334
ASN
322
A
ASN
323
n
335
ASN
323
A
ALA
324
n
336
ALA
324
A
THR
325
n
337
THR
325
A
VAL
326
n
338
VAL
326
A
GLY
327
n
339
GLY
327
A
ASP
328
n
340
ASP
328
A
LYS
329
n
341
LYS
329
A
HIS
330
n
342
HIS
330
A
SER
331
n
343
SER
331
A
PRO
332
n
344
PRO
332
A
GLU
333
n
345
GLU
333
A
LEU
334
n
346
LEU
334
A
ALA
335
n
347
ALA
335
A
ILE
336
n
348
ILE
336
A
LEU
337
n
349
LEU
337
A
PHE
338
n
350
PHE
338
A
GLU
339
n
351
GLU
339
A
PHE
340
n
352
PHE
340
A
ARG
341
n
353
ARG
341
A
THR
342
n
354
THR
342
A
VAL
343
n
355
VAL
343
A
PRO
344
n
356
PRO
344
A
ASN
345
n
357
ASN
345
A
GLU
346
n
358
GLU
346
A
LEU
347
n
359
LEU
347
A
GLN
348
n
360
GLN
348
A
SER
349
n
361
SER
349
A
TYR
350
n
362
TYR
350
A
LEU
351
n
363
LEU
351
A
PRO
352
n
364
PRO
352
A
LYS
353
n
365
LYS
353
A
THR
354
n
366
THR
354
A
GLU
355
n
367
GLU
355
A
n
368
356
A
n
369
357
A
n
370
358
A
n
371
359
A
n
372
360
A
n
373
361
A
n
374
362
A
n
375
363
A
n
376
364
A
n
377
365
A
n
378
366
A
n
379
367
A
n
380
368
A
n
381
369
A
n
382
370
A
n
383
371
A
n
384
372
A
n
385
373
A
n
386
374
A
n
387
375
A
n
388
376
A
n
389
377
A
n
390
378
A
n
391
379
A
n
392
380
A
n
393
381
A
n
394
382
A
n
395
383
A
n
396
384
A
0.2548
0.2312
0.1600
0.2619
-0.2428
0.1581
0.0007
-0.0017
-0.0026
0.0080
0.0019
-0.0039
0.0024
-0.0066
-0.0026
0.0061
0.0048
0.0014
0.0171
0.0204
0.0137
refined
34.4052
89.1664
16.5802
X-RAY DIFFRACTION
0.5591
-0.1479
-0.2740
0.0000
0.2767
0.0000
0.0000
-0.0094
0.0006
0.0158
0.0043
0.0009
-0.0017
-0.0048
-0.0043
-0.0518
-0.0164
-0.0090
0.0135
0.0197
0.0272
refined
46.0951
89.9733
6.2790
X-RAY DIFFRACTION
0.0344
0.0439
-0.1146
0.1186
-0.0197
0.0000
-0.0002
0.0060
-0.0066
-0.0023
0.0050
-0.0003
-0.0024
0.0068
-0.0048
-0.0317
-0.0199
0.0092
-0.0088
-0.0081
0.0180
refined
55.2347
88.0492
-7.2223
X-RAY DIFFRACTION
0.0010
-0.2173
0.2039
0.0033
-0.1842
0.0073
0.0012
-0.0215
0.0081
0.0152
-0.0015
-0.0074
-0.0049
-0.0263
0.0002
-0.0398
-0.0021
-0.0105
0.0088
0.0117
0.0019
refined
46.4972
98.5248
11.3811
X-RAY DIFFRACTION
0.1414
-0.3474
-0.1336
0.0000
0.0290
0.0004
0.0005
-0.0130
-0.0039
0.0134
-0.0011
-0.0020
-0.0017
0.0020
0.0006
-0.0246
-0.0001
-0.0017
0.0143
-0.0065
0.0044
refined
54.1639
93.1939
9.5281
X-RAY DIFFRACTION
0.1848
-0.1632
0.4357
0.0090
-0.4619
0.1118
0.0008
-0.0105
-0.0024
-0.0051
0.0035
-0.0124
-0.0032
-0.0158
-0.0044
-0.0259
-0.0121
0.0119
-0.0097
0.0253
0.0105
refined
40.7538
99.1257
2.9213
X-RAY DIFFRACTION
0.3729
-0.1454
-0.1217
0.0000
0.0427
0.1947
0.0012
-0.0082
0.0002
0.0051
0.0000
0.0038
-0.0072
-0.0039
-0.0012
-0.0647
0.0100
0.0036
0.0512
0.0051
0.0055
refined
9.2846
91.3206
13.2702
X-RAY DIFFRACTION
0.3834
-0.9379
0.1333
0.0000
-0.3339
0.0004
0.0038
-0.0249
0.0035
0.0211
-0.0081
-0.0065
-0.0013
-0.0103
0.0043
-0.0801
0.0139
-0.0083
0.0222
0.0128
0.0140
refined
12.4122
85.7006
4.0558
X-RAY DIFFRACTION
0.5110
-0.0446
-0.2718
0.0000
0.1387
0.0009
-0.0003
-0.0070
0.0039
-0.0012
-0.0023
-0.0050
0.0076
0.0032
0.0026
-0.0439
0.0069
-0.0071
0.0023
0.0036
0.0140
refined
20.5665
85.9637
-7.0358
X-RAY DIFFRACTION
0.9032
0.0577
-0.2551
0.0000
-1.3437
0.3228
0.0022
-0.0034
-0.0116
0.0344
-0.0079
-0.0019
0.0151
-0.0106
0.0057
-0.0810
-0.0482
-0.0172
0.0471
0.0432
0.0159
refined
11.9668
78.3427
4.7469
X-RAY DIFFRACTION
0.4644
0.1431
0.0950
0.0000
-0.2806
0.0000
0.0008
-0.0158
0.0026
0.0222
-0.0001
0.0028
0.0063
-0.0063
-0.0007
-0.0217
-0.0185
-0.0079
0.0210
0.0296
0.0064
refined
26.1770
86.6694
15.8146
X-RAY DIFFRACTION
0.0405
-0.0868
0.0190
0.1189
-0.0005
0.0000
-0.0002
-0.0028
0.0002
0.0015
0.0005
0.0020
-0.0020
-0.0020
-0.0002
-0.0111
-0.0005
0.0053
0.0009
-0.0014
0.0085
refined
32.6212
105.0237
10.6475
X-RAY DIFFRACTION
0.0786
0.0036
0.0458
0.0947
-0.0318
0.0212
-0.0005
0.0012
-0.0023
-0.0014
0.0011
0.0007
0.0008
0.0004
-0.0006
0.0195
-0.0006
-0.0018
0.0225
0.0051
0.0160
refined
33.5670
88.7836
10.1476
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
{ A|0 - A|17 }
X-RAY DIFFRACTION
2
{ A|18 - A|53 }
X-RAY DIFFRACTION
3
{ A|54 - A|78 }
X-RAY DIFFRACTION
4
{ A|79 - A|116 }
X-RAY DIFFRACTION
5
{ A|117 - A|143 }
X-RAY DIFFRACTION
6
{ A|144 - A|170 }
X-RAY DIFFRACTION
7
{ A|171 - A|206 }
X-RAY DIFFRACTION
8
{ A|207 - A|236 }
X-RAY DIFFRACTION
9
{ A|237 - A|269 }
X-RAY DIFFRACTION
10
{ A|270 - A|319 }
X-RAY DIFFRACTION
11
{ A|320 - A|343 }
X-RAY DIFFRACTION
12
{ A|344 - A|355 }
X-RAY DIFFRACTION
13
{ A|401 - A|401 }
author_and_software_defined_assembly
PISA
1
monomeric
A
GLU
16
A
OE2
GLU
28
1_555
A
MN
402
C
MN
MN
1_555
A
GLN
162
A
OE1
GLN
174
1_555
109.5
A
GLU
16
A
OE2
GLU
28
1_555
A
MN
403
D
MN
MN
1_555
A
GLU
78
A
OE1
GLU
90
1_555
102.0
A
GLU
16
A
OE2
GLU
28
1_555
A
MN
403
D
MN
MN
1_555
A
ADP
401
B
O3B
ADP
1_555
71.6
A
GLU
78
A
OE1
GLU
90
1_555
A
MN
403
D
MN
MN
1_555
A
ADP
401
B
O3B
ADP
1_555
170.0
A
GLU
16
A
OE2
GLU
28
1_555
A
MN
403
D
MN
MN
1_555
A
ADP
401
B
O2A
ADP
1_555
100.0
A
GLU
78
A
OE1
GLU
90
1_555
A
MN
403
D
MN
MN
1_555
A
ADP
401
B
O2A
ADP
1_555
105.3
A
ADP
401
B
O3B
ADP
1_555
A
MN
403
D
MN
MN
1_555
A
ADP
401
B
O2A
ADP
1_555
83.7
A
GLU
16
A
OE2
GLU
28
1_555
A
MN
403
D
MN
MN
1_555
A
HOH
636
H
O
HOH
1_555
105.7
A
GLU
78
A
OE1
GLU
90
1_555
A
MN
403
D
MN
MN
1_555
A
HOH
636
H
O
HOH
1_555
92.6
A
ADP
401
B
O3B
ADP
1_555
A
MN
403
D
MN
MN
1_555
A
HOH
636
H
O
HOH
1_555
82.0
A
ADP
401
B
O2A
ADP
1_555
A
MN
403
D
MN
MN
1_555
A
HOH
636
H
O
HOH
1_555
144.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CB
GLU
355
A
CB
GLU
367
1
Y
1
A
CG
GLU
355
A
CG
GLU
367
1
Y
1
A
CD
GLU
355
A
CD
GLU
367
1
Y
1
A
OE1
GLU
355
A
OE1
GLU
367
1
Y
1
A
OE2
GLU
355
A
OE2
GLU
367
1
Y
1
A
ASN
-11
A
ASN
1
1
Y
1
A
ALA
-10
A
ALA
2
1
Y
1
A
GLN
-9
A
GLN
3
1
Y
1
A
PRO
-8
A
PRO
4
1
Y
1
A
ASN
-7
A
ASN
5
1
Y
1
A
LEU
-6
A
LEU
6
1
Y
1
A
GLY
-5
A
GLY
7
1
Y
1
A
ARG
-4
A
ARG
8
1
Y
1
A
SER
-3
A
SER
9
1
Y
1
A
THR
-2
A
THR
10
1
Y
1
A
LYS
-1
A
LYS
11
1
Y
1
A
SER
356
A
SER
368
1
Y
1
A
THR
357
A
THR
369
1
Y
1
A
THR
358
A
THR
370
1
Y
1
A
LYS
359
A
LYS
371
1
Y
1
A
SER
360
A
SER
372
1
Y
1
A
GLU
361
A
GLU
373
1
Y
1
A
VAL
362
A
VAL
374
1
Y
1
A
LYS
363
A
LYS
375
1
Y
1
A
LEU
364
A
LEU
376
1
Y
1
A
LEU
365
A
LEU
377
1
Y
1
A
ASP
366
A
ASP
378
1
Y
1
A
GLN
367
A
GLN
379
1
Y
1
A
PHE
368
A
PHE
380
1
Y
1
A
ASP
369
A
ASP
381
1
Y
1
A
PRO
370
A
PRO
382
1
Y
1
A
MET
371
A
MET
383
1
Y
1
A
LYS
372
A
LYS
384
1
Y
1
A
ARG
373
A
ARG
385
1
Y
1
A
LYS
374
A
LYS
386
1
Y
1
A
THR
375
A
THR
387
1
Y
1
A
VAL
376
A
VAL
388
1
Y
1
A
ILE
377
A
ILE
389
1
Y
1
A
GLN
378
A
GLN
390
1
Y
1
A
GLN
379
A
GLN
391
1
Y
1
A
VAL
380
A
VAL
392
1
Y
1
A
GLU
381
A
GLU
393
1
Y
1
A
SER
382
A
SER
394
1
Y
1
A
LEU
383
A
LEU
395
1
Y
1
A
VAL
384
A
VAL
396
1
Y
1
A
LYS
10
-134.03
-152.64
1
A
ASP
51
-117.88
-93.95
1
A
ASN
238
49.20
-111.80
1
A
GLU
264
72.92
-61.44
1
A
ALA
317
-151.67
73.07
30.88
-5.49870
0.00000
0.00000
-5.49870
0.00000
10.99740
0.825
0.801
0.241
0.222
0.223
2.49
45.39
951
22761
22761
4.180
98.8
0.290
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
PDB ENTRY 4E1C
Engh & Huber
0.36
2.49
45.39
136
2937
44
0
2757
0.008
2885
HARMONIC
2.000
1.06
3927
HARMONIC
2.000
990
SINUSOIDAL
2.000
80
HARMONIC
2.000
422
HARMONIC
5.000
2885
HARMONIC
20.000
0
SEMIHARMONIC
5.000
2.47
19.44
0
385
SEMIHARMONIC
5.00
0
3326
SEMIHARMONIC
4.00
0.2615
0.2304
0.2317
2.61
121
2799
2920
11
4.14
98.81
43.43
2.490
50.000
4E1D
42340
0.000
0.10600
1
10.2000
4.200
100.0
0.41600
2.49
2.56
3.000
1
2.70
94.8
data collection
MAR345dtb
phasing
MOLREP
refinement
BUSTER
2.11.2
data reduction
XDS
data scaling
XSCALE
Structure of a VgrG Vibrio cholerae toxin ACD domain in complex with ADP and Mn++
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
5
N
N
A
PRO
60
A
PRO
72
HELX_P
A
GLN
64
A
GLN
76
5
1
5
A
ASP
88
A
ASP
100
HELX_P
A
SER
113
A
SER
125
1
2
26
A
THR
157
A
THR
169
HELX_P
A
SER
159
A
SER
171
5
3
3
A
LYS
170
A
LYS
182
HELX_P
A
PHE
172
A
PHE
184
5
4
3
A
THR
177
A
THR
189
HELX_P
A
SER
185
A
SER
197
1
5
9
A
LYS
191
A
LYS
203
HELX_P
A
THR
201
A
THR
213
1
6
11
A
ASP
208
A
ASP
220
HELX_P
A
GLY
234
A
GLY
246
1
7
27
A
ASP
241
A
ASP
253
HELX_P
A
GLN
246
A
GLN
258
5
8
6
A
ASP
256
A
ASP
268
HELX_P
A
GLU
264
A
GLU
276
1
9
9
A
LYS
270
A
LYS
282
HELX_P
A
LEU
278
A
LEU
290
5
10
9
A
SER
279
A
SER
291
HELX_P
A
SER
296
A
SER
308
1
11
18
A
SER
299
A
SER
311
HELX_P
A
ASP
312
A
ASP
324
1
12
14
A
PRO
344
A
PRO
356
HELX_P
A
LEU
351
A
LEU
363
5
13
8
metalc
2.673
A
GLU
16
A
OE2
GLU
28
1_555
A
MN
402
C
MN
MN
1_555
metalc
2.205
A
GLU
16
A
OE2
GLU
28
1_555
A
MN
403
D
MN
MN
1_555
metalc
2.533
A
GLU
78
A
OE1
GLU
90
1_555
A
MN
403
D
MN
MN
1_555
metalc
2.676
A
GLN
162
A
OE1
GLN
174
1_555
A
MN
402
C
MN
MN
1_555
metalc
2.526
A
ADP
401
B
O3B
ADP
1_555
A
MN
403
D
MN
MN
1_555
metalc
2.710
A
ADP
401
B
O2A
ADP
1_555
A
MN
403
D
MN
MN
1_555
metalc
2.748
A
MN
403
D
MN
MN
1_555
A
HOH
636
H
O
HOH
1_555
TOXIN
alpha beta protein, G-actin cross-linking toxin, G-actin (substrate), TOXIN
Q9KS45_VIBCH
UNP
1
716
Q9KS45
NAQPNLGRSTKATPDFPTHFPKSSIGIENELAGLVVAMPANSAQKFGYVKSAQGDALFMLTKDMNQGSYQRPPSLQDGKN
YQNWQTHTVELVSYPCEMDDKAAVETRKQAMLWLATHFTTHIDQSNHQPLAPIQSEDGRFVIEITNAKHVIAAGNGISAE
SQGQTITMTPSGQQATVGVAAKGFGTSATPELRLLESAPWYQKSLKSQFASLTSAENLDDKELAANVFAYLTSIYLKTAE
LAKKFGIYINEWDPMSEQITPNANGLTDPKVKNAWEILPRTKPSKIVEILSKSDAKAVMKHIKPQLQSRYSESLSKNVFQ
YFQDGGEVAGHGINNATVGDKHSPELAILFEFRTVPNELQSYLPKTESTTKSEVKLLDQFDPMKRKTVIQQVESLV
717
1111
4E1D
-10
384
Q9KS45
A
1
2
396
BINDING SITE FOR RESIDUE ADP A 401
A
ADP
401
Software
14
BINDING SITE FOR RESIDUE MN A 402
A
MN
402
Software
4
BINDING SITE FOR RESIDUE MN A 403
A
MN
403
Software
4
BINDING SITE FOR RESIDUE SO4 A 404
A
SO4
404
Software
4
BINDING SITE FOR RESIDUE SO4 A 405
A
SO4
405
Software
6
BINDING SITE FOR RESIDUE SO4 A 406
A
SO4
406
Software
5
A
PHE
4
A
PHE
16
14
1_555
A
SER
12
A
SER
24
14
1_555
A
GLY
14
A
GLY
26
14
1_555
A
ILE
15
A
ILE
27
14
1_555
A
GLU
16
A
GLU
28
14
1_555
A
VAL
80
A
VAL
92
14
1_555
A
SER
81
A
SER
93
14
1_555
A
PRO
83
A
PRO
95
14
1_555
A
THR
164
A
THR
176
14
1_555
A
ARG
268
A
ARG
280
14
1_555
A
LEU
337
A
LEU
349
14
1_555
A
MN
402
C
MN
14
1_555
A
MN
403
D
MN
14
1_555
A
HOH
563
H
HOH
14
1_555
A
GLU
16
A
GLU
28
4
1_555
A
GLN
162
A
GLN
174
4
1_555
A
GLU
339
A
GLU
351
4
1_555
A
ADP
401
B
ADP
4
1_555
A
GLU
16
A
GLU
28
4
1_555
A
GLU
78
A
GLU
90
4
1_555
A
ADP
401
B
ADP
4
1_555
A
HOH
636
H
HOH
4
1_555
A
PRO
257
A
PRO
269
4
1_555
A
LYS
260
A
LYS
272
4
1_555
A
ARG
341
A
ARG
353
4
1_555
A
HOH
630
H
HOH
4
1_555
A
GLY
142
A
GLY
154
6
1_555
A
ASN
143
A
ASN
155
6
1_555
A
GLY
144
A
GLY
156
6
1_555
A
ILE
145
A
ILE
157
6
1_555
A
SER
146
A
SER
158
6
1_555
A
HOH
538
H
HOH
6
1_555
A
TRP
101
A
TRP
113
5
1_555
A
HIS
105
A
HIS
117
5
1_555
A
ILE
121
A
ILE
133
5
1_555
A
GLU
124
A
GLU
136
5
1_555
A
HOH
629
H
HOH
5
1_555
95
P 43 2 2