0.017072
0.009857
0.000000
0.000000
0.019713
0.000000
0.000000
0.000000
0.002539
0.000000
0.000000
0.000000
Aripirala, S.
Amzel, L.M.
Gabelli, S.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.000
90.000
120.000
58.575
58.575
393.933
C8 H21 N O6 P2
289.203
[2-(hexylamino)ethane-1,1-diyl]bis(phosphonic acid)
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C5 H12 O7 P2
246.092
3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE
ISOPENTENYL PYROPHOSPHATE
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
C
N
6
N
P
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
C
N
11
N
N
N
12
N
C
N
13
N
C
N
14
N
C
N
15
N
C
N
16
N
C
N
17
N
C
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
N
N
40
S
C
N
41
N
C
N
42
N
O
N
43
N
C
N
44
N
O
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
N
N
53
S
C
N
54
N
C
N
55
N
O
N
56
N
C
N
57
N
C
N
58
N
C
N
59
N
N
N
60
N
C
N
61
N
N
N
62
N
N
N
63
N
O
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
N
N
80
S
C
N
81
N
C
N
82
N
O
N
83
N
C
N
84
N
C
N
85
N
O
N
86
N
N
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
R
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
S
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
N
N
127
S
C
N
128
N
C
N
129
N
O
N
130
N
C
N
131
N
C
N
132
N
C
N
133
N
O
N
134
N
N
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
S
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
O
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
N
N
166
N
C
N
167
N
C
N
168
N
O
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
N
C
Y
180
N
C
Y
181
N
N
Y
182
N
C
Y
183
N
C
Y
184
N
N
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
S
C
N
204
N
C
N
205
N
C
N
206
N
C
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
R
P
N
228
N
O
N
229
N
O
N
230
N
O
N
231
N
P
N
232
N
O
N
233
N
O
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
N
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
S
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
MG
N
315
N
NA
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
C
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
R
C
N
375
N
O
N
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
N
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
N
425
N
O
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
N
441
N
O
N
442
N
C
N
443
N
C
N
444
N
C
N
445
N
O
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
doub
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
Y
177
N
sing
Y
178
N
doub
Y
179
N
doub
N
180
N
sing
Y
181
N
sing
N
182
N
sing
Y
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
Y
310
N
doub
Y
311
N
sing
Y
312
N
sing
N
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
doub
N
317
N
sing
Y
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
Y
379
N
doub
Y
380
N
sing
Y
381
N
sing
N
382
N
sing
Y
383
N
doub
Y
384
N
sing
Y
385
N
sing
N
386
N
sing
Y
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
Y
407
N
doub
Y
408
N
sing
Y
409
N
sing
N
410
N
sing
Y
411
N
doub
N
412
N
sing
Y
413
N
doub
N
414
N
sing
Y
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
doub
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
55
6445
6454
10.1021/jm300425y
22715997
Design, synthesis, calorimetry, and crystallographic analysis of 2-alkylaminoethyl-1,1-bisphosphonates as inhibitors of Trypanosoma cruzi farnesyl diphosphate synthase.
2012
10.2210/pdb4e1e/pdb
pdb_00004e1e
100
1
CCD
2011-11-11
ADSC QUANTUM 210
Si(111) channel cut
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
X6A
NSLS
0.979
SYNCHROTRON
NSLS BEAMLINE X6A
41094.133
Farnesyl pyrophosphate synthase
2.5.1.10
1
man
polymer
24.305
MAGNESIUM ION
3
syn
non-polymer
289.203
[2-(hexylamino)ethane-1,1-diyl]bis(phosphonic acid)
1
syn
non-polymer
246.092
3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
23
nat
water
FPPS, farnesyl diphosphate synthase
no
no
ASMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDAC
VGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDY
ATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHL
IGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADF
AAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK
ASMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDAC
VGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDY
ATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHL
IGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADF
AAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
FPPS
5693
Trypanosoma cruzi
469008
Escherichia coli
BL21(DE3)
plasmid
pET28a
1
2.37
48.18
VAPOR DIFFUSION, HANGING DROP
5.0
PEG4000, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Non-polymer description
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-01-16
1
1
2013-04-17
1
2
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-03-06
REL
REL
MG
MAGNESIUM ION
0MW
[2-(hexylamino)ethane-1,1-diyl]bis(phosphonic acid)
IPE
3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE
NA
SODIUM ION
HOH
water
4DWG
PDB ENTRY 4DWG
PDB
experimental model
MG
401
2
MG
MG
401
A
MG
402
2
MG
MG
402
A
MG
403
2
MG
MG
403
A
B18
500
3
0MW
0MW
404
A
IPR
501
4
IPE
IPE
405
A
NA
1
5
NA
NA
406
A
HOH
3
6
HOH
HOH
501
A
HOH
5
6
HOH
HOH
502
A
HOH
6
6
HOH
HOH
503
A
HOH
8
6
HOH
HOH
504
A
HOH
10
6
HOH
HOH
505
A
HOH
11
6
HOH
HOH
506
A
HOH
12
6
HOH
HOH
507
A
HOH
13
6
HOH
HOH
508
A
HOH
14
6
HOH
HOH
509
A
HOH
15
6
HOH
HOH
510
A
HOH
17
6
HOH
HOH
511
A
HOH
18
6
HOH
HOH
512
A
HOH
21
6
HOH
HOH
513
A
HOH
22
6
HOH
HOH
514
A
HOH
23
6
HOH
HOH
515
A
HOH
27
6
HOH
HOH
516
A
HOH
28
6
HOH
HOH
517
A
HOH
29
6
HOH
HOH
518
A
HOH
30
6
HOH
HOH
519
A
HOH
32
6
HOH
HOH
520
A
HOH
33
6
HOH
HOH
521
A
HOH
39
6
HOH
HOH
522
A
HOH
40
6
HOH
HOH
523
A
ALA
2
n
1
ALA
2
A
SER
3
n
2
SER
3
A
MET
4
n
3
MET
4
A
GLU
5
n
4
GLU
5
A
ARG
6
n
5
ARG
6
A
PHE
7
n
6
PHE
7
A
LEU
8
n
7
LEU
8
A
SER
9
n
8
SER
9
A
VAL
10
n
9
VAL
10
A
TYR
11
n
10
TYR
11
A
ASP
12
n
11
ASP
12
A
GLU
13
n
12
GLU
13
A
VAL
14
n
13
VAL
14
A
GLN
15
n
14
GLN
15
A
ALA
16
n
15
ALA
16
A
PHE
17
n
16
PHE
17
A
LEU
18
n
17
LEU
18
A
LEU
19
n
18
LEU
19
A
ASP
20
n
19
ASP
20
A
GLN
21
n
20
GLN
21
A
LEU
22
n
21
LEU
22
A
GLN
23
n
22
GLN
23
A
SER
24
n
23
SER
24
A
LYS
25
n
24
LYS
25
A
TYR
26
n
25
TYR
26
A
GLU
27
n
26
GLU
27
A
ILE
28
n
27
ILE
28
A
ASP
29
n
28
ASP
29
A
PRO
30
n
29
PRO
30
A
ASN
31
n
30
ASN
31
A
ARG
32
n
31
ARG
32
A
ALA
33
n
32
ALA
33
A
ARG
34
n
33
ARG
34
A
TYR
35
n
34
TYR
35
A
LEU
36
n
35
LEU
36
A
ARG
37
n
36
ARG
37
A
ILE
38
n
37
ILE
38
A
MET
39
n
38
MET
39
A
MET
40
n
39
MET
40
A
ASP
41
n
40
ASP
41
A
THR
42
n
41
THR
42
A
THR
43
n
42
THR
43
A
CYS
44
n
43
CYS
44
A
LEU
45
n
44
LEU
45
A
GLY
46
n
45
GLY
46
A
GLY
47
n
46
GLY
47
A
LYS
48
n
47
LYS
48
A
TYR
49
n
48
TYR
49
A
PHE
50
n
49
PHE
50
A
ARG
51
n
50
ARG
51
A
GLY
52
n
51
GLY
52
A
MET
53
n
52
MET
53
A
THR
54
n
53
THR
54
A
VAL
55
n
54
VAL
55
A
VAL
56
n
55
VAL
56
A
ASN
57
n
56
ASN
57
A
VAL
58
n
57
VAL
58
A
ALA
59
n
58
ALA
59
A
GLU
60
n
59
GLU
60
A
GLY
61
n
60
GLY
61
A
PHE
62
n
61
PHE
62
A
LEU
63
n
62
LEU
63
A
ALA
64
n
63
ALA
64
A
VAL
65
n
64
VAL
65
A
THR
66
n
65
THR
66
A
GLN
67
n
66
GLN
67
A
HIS
68
n
67
HIS
68
A
ASP
69
n
68
ASP
69
A
GLU
70
n
69
GLU
70
A
ALA
71
n
70
ALA
71
A
THR
72
n
71
THR
72
A
LYS
73
n
72
LYS
73
A
GLU
74
n
73
GLU
74
A
ARG
75
n
74
ARG
75
A
ILE
76
n
75
ILE
76
A
LEU
77
n
76
LEU
77
A
HIS
78
n
77
HIS
78
A
ASP
79
n
78
ASP
79
A
ALA
80
n
79
ALA
80
A
CYS
81
n
80
CYS
81
A
VAL
82
n
81
VAL
82
A
GLY
83
n
82
GLY
83
A
GLY
84
n
83
GLY
84
A
TRP
85
n
84
TRP
85
A
MET
86
n
85
MET
86
A
ILE
87
n
86
ILE
87
A
GLU
88
n
87
GLU
88
A
PHE
89
n
88
PHE
89
A
LEU
90
n
89
LEU
90
A
GLN
91
n
90
GLN
91
A
ALA
92
n
91
ALA
92
A
HIS
93
n
92
HIS
93
A
TYR
94
n
93
TYR
94
A
LEU
95
n
94
LEU
95
A
VAL
96
n
95
VAL
96
A
GLU
97
n
96
GLU
97
A
ASP
98
n
97
ASP
98
A
ASP
99
n
98
ASP
99
A
ILE
100
n
99
ILE
100
A
MET
101
n
100
MET
101
A
ASP
102
n
101
ASP
102
A
GLY
103
n
102
GLY
103
A
SER
104
n
103
SER
104
A
VAL
105
n
104
VAL
105
A
MET
106
n
105
MET
106
A
ARG
107
n
106
ARG
107
A
ARG
108
n
107
ARG
108
A
GLY
109
n
108
GLY
109
A
LYS
110
n
109
LYS
110
A
PRO
111
n
110
PRO
111
A
CYS
112
n
111
CYS
112
A
TRP
113
n
112
TRP
113
A
TYR
114
n
113
TYR
114
A
ARG
115
n
114
ARG
115
A
PHE
116
n
115
PHE
116
A
PRO
117
n
116
PRO
117
A
GLY
118
n
117
GLY
118
A
VAL
119
n
118
VAL
119
A
THR
120
n
119
THR
120
A
THR
121
n
120
THR
121
A
GLN
122
n
121
GLN
122
A
CYS
123
n
122
CYS
123
A
ALA
124
n
123
ALA
124
A
ILE
125
n
124
ILE
125
A
ASN
126
n
125
ASN
126
A
ASP
127
n
126
ASP
127
A
GLY
128
n
127
GLY
128
A
ILE
129
n
128
ILE
129
A
ILE
130
n
129
ILE
130
A
LEU
131
n
130
LEU
131
A
LYS
132
n
131
LYS
132
A
SER
133
n
132
SER
133
A
TRP
134
n
133
TRP
134
A
THR
135
n
134
THR
135
A
GLN
136
n
135
GLN
136
A
ILE
137
n
136
ILE
137
A
MET
138
n
137
MET
138
A
ALA
139
n
138
ALA
139
A
TRP
140
n
139
TRP
140
A
HIS
141
n
140
HIS
141
A
TYR
142
n
141
TYR
142
A
PHE
143
n
142
PHE
143
A
ALA
144
n
143
ALA
144
A
ASP
145
n
144
ASP
145
A
ARG
146
n
145
ARG
146
A
PRO
147
n
146
PRO
147
A
PHE
148
n
147
PHE
148
A
LEU
149
n
148
LEU
149
A
LYS
150
n
149
LYS
150
A
ASP
151
n
150
ASP
151
A
LEU
152
n
151
LEU
152
A
LEU
153
n
152
LEU
153
A
CYS
154
n
153
CYS
154
A
LEU
155
n
154
LEU
155
A
PHE
156
n
155
PHE
156
A
GLN
157
n
156
GLN
157
A
LYS
158
n
157
LYS
158
A
VAL
159
n
158
VAL
159
A
ASP
160
n
159
ASP
160
A
TYR
161
n
160
TYR
161
A
ALA
162
n
161
ALA
162
A
THR
163
n
162
THR
163
A
ALA
164
n
163
ALA
164
A
VAL
165
n
164
VAL
165
A
GLY
166
n
165
GLY
166
A
GLN
167
n
166
GLN
167
A
MET
168
n
167
MET
168
A
TYR
169
n
168
TYR
169
A
ASP
170
n
169
ASP
170
A
VAL
171
n
170
VAL
171
A
THR
172
n
171
THR
172
A
SER
173
n
172
SER
173
A
MET
174
n
173
MET
174
A
CYS
175
n
174
CYS
175
A
ASP
176
n
175
ASP
176
A
SER
177
n
176
SER
177
A
ASN
178
n
177
ASN
178
A
LYS
179
n
178
LYS
179
A
LEU
180
n
179
LEU
180
A
ASP
181
n
180
ASP
181
A
PRO
182
n
181
PRO
182
A
GLU
183
n
182
GLU
183
A
VAL
184
n
183
VAL
184
A
ALA
185
n
184
ALA
185
A
GLN
186
n
185
GLN
186
A
PRO
187
n
186
PRO
187
A
MET
188
n
187
MET
188
A
THR
189
n
188
THR
189
A
THR
190
n
189
THR
190
A
ASP
191
n
190
ASP
191
A
PHE
192
n
191
PHE
192
A
ALA
193
n
192
ALA
193
A
GLU
194
n
193
GLU
194
A
PHE
195
n
194
PHE
195
A
THR
196
n
195
THR
196
A
PRO
197
n
196
PRO
197
A
ALA
198
n
197
ALA
198
A
ILE
199
n
198
ILE
199
A
TYR
200
n
199
TYR
200
A
LYS
201
n
200
LYS
201
A
ARG
202
n
201
ARG
202
A
ILE
203
n
202
ILE
203
A
VAL
204
n
203
VAL
204
A
LYS
205
n
204
LYS
205
A
TYR
206
n
205
TYR
206
A
LYS
207
n
206
LYS
207
A
THR
208
n
207
THR
208
A
THR
209
n
208
THR
209
A
PHE
210
n
209
PHE
210
A
TYR
211
n
210
TYR
211
A
THR
212
n
211
THR
212
A
TYR
213
n
212
TYR
213
A
LEU
214
n
213
LEU
214
A
LEU
215
n
214
LEU
215
A
PRO
216
n
215
PRO
216
A
LEU
217
n
216
LEU
217
A
VAL
218
n
217
VAL
218
A
MET
219
n
218
MET
219
A
GLY
220
n
219
GLY
220
A
LEU
221
n
220
LEU
221
A
PHE
222
n
221
PHE
222
A
VAL
223
n
222
VAL
223
A
SER
224
n
223
SER
224
A
GLU
225
n
224
GLU
225
A
ALA
226
n
225
ALA
226
A
ALA
227
n
226
ALA
227
A
ALA
228
n
227
ALA
228
A
SER
229
n
228
SER
229
A
VAL
230
n
229
VAL
230
A
GLU
231
n
230
GLU
231
A
MET
232
n
231
MET
232
A
ASN
233
n
232
ASN
233
A
LEU
234
n
233
LEU
234
A
VAL
235
n
234
VAL
235
A
GLU
236
n
235
GLU
236
A
ARG
237
n
236
ARG
237
A
VAL
238
n
237
VAL
238
A
ALA
239
n
238
ALA
239
A
HIS
240
n
239
HIS
240
A
LEU
241
n
240
LEU
241
A
ILE
242
n
241
ILE
242
A
GLY
243
n
242
GLY
243
A
GLU
244
n
243
GLU
244
A
TYR
245
n
244
TYR
245
A
PHE
246
n
245
PHE
246
A
GLN
247
n
246
GLN
247
A
VAL
248
n
247
VAL
248
A
GLN
249
n
248
GLN
249
A
ASP
250
n
249
ASP
250
A
ASP
251
n
250
ASP
251
A
VAL
252
n
251
VAL
252
A
MET
253
n
252
MET
253
A
ASP
254
n
253
ASP
254
A
CYS
255
n
254
CYS
255
A
PHE
256
n
255
PHE
256
A
THR
257
n
256
THR
257
A
PRO
258
n
257
PRO
258
A
PRO
259
n
258
PRO
259
A
GLU
260
n
259
GLU
260
A
GLN
261
n
260
GLN
261
A
LEU
262
n
261
LEU
262
A
GLY
263
n
262
GLY
263
A
LYS
264
n
263
LYS
264
A
VAL
265
n
264
VAL
265
A
GLY
266
n
265
GLY
266
A
THR
267
n
266
THR
267
A
ASP
268
n
267
ASP
268
A
ILE
269
n
268
ILE
269
A
GLU
270
n
269
GLU
270
A
ASP
271
n
270
ASP
271
A
ALA
272
n
271
ALA
272
A
LYS
273
n
272
LYS
273
A
CYS
274
n
273
CYS
274
A
SER
275
n
274
SER
275
A
TRP
276
n
275
TRP
276
A
LEU
277
n
276
LEU
277
A
ALA
278
n
277
ALA
278
A
VAL
279
n
278
VAL
279
A
THR
280
n
279
THR
280
A
PHE
281
n
280
PHE
281
A
LEU
282
n
281
LEU
282
A
GLY
283
n
282
GLY
283
A
LYS
284
n
283
LYS
284
A
ALA
285
n
284
ALA
285
A
ASN
286
n
285
ASN
286
A
ALA
287
n
286
ALA
287
A
ALA
288
n
287
ALA
288
A
GLN
289
n
288
GLN
289
A
VAL
290
n
289
VAL
290
A
ALA
291
n
290
ALA
291
A
GLU
292
n
291
GLU
292
A
PHE
293
n
292
PHE
293
A
LYS
294
n
293
LYS
294
A
ALA
295
n
294
ALA
295
A
ASN
296
n
295
ASN
296
A
TYR
297
n
296
TYR
297
A
GLY
298
n
297
GLY
298
A
ASP
299
n
298
ASP
299
A
LYS
300
n
299
LYS
300
A
ASP
301
n
300
ASP
301
A
PRO
302
n
301
PRO
302
A
ALA
303
n
302
ALA
303
A
LYS
304
n
303
LYS
304
A
VAL
305
n
304
VAL
305
A
ALA
306
n
305
ALA
306
A
VAL
307
n
306
VAL
307
A
VAL
308
n
307
VAL
308
A
LYS
309
n
308
LYS
309
A
ARG
310
n
309
ARG
310
A
LEU
311
n
310
LEU
311
A
TYR
312
n
311
TYR
312
A
SER
313
n
312
SER
313
A
GLU
314
n
313
GLU
314
A
ALA
315
n
314
ALA
315
A
ASN
316
n
315
ASN
316
A
LEU
317
n
316
LEU
317
A
GLN
318
n
317
GLN
318
A
ALA
319
n
318
ALA
319
A
ASP
320
n
319
ASP
320
A
PHE
321
n
320
PHE
321
A
ALA
322
n
321
ALA
322
A
ALA
323
n
322
ALA
323
A
TYR
324
n
323
TYR
324
A
GLU
325
n
324
GLU
325
A
ALA
326
n
325
ALA
326
A
GLU
327
n
326
GLU
327
A
VAL
328
n
327
VAL
328
A
VAL
329
n
328
VAL
329
A
ARG
330
n
329
ARG
330
A
GLU
331
n
330
GLU
331
A
VAL
332
n
331
VAL
332
A
GLU
333
n
332
GLU
333
A
SER
334
n
333
SER
334
A
LEU
335
n
334
LEU
335
A
ILE
336
n
335
ILE
336
A
GLU
337
n
336
GLU
337
A
GLN
338
n
337
GLN
338
A
LEU
339
n
338
LEU
339
A
LYS
340
n
339
LYS
340
A
VAL
341
n
340
VAL
341
A
LYS
342
n
341
LYS
342
A
SER
343
n
342
SER
343
A
PRO
344
n
343
PRO
344
A
THR
345
n
344
THR
345
A
PHE
346
n
345
PHE
346
A
ALA
347
n
346
ALA
347
A
GLU
348
n
347
GLU
348
A
SER
349
n
348
SER
349
A
VAL
350
n
349
VAL
350
A
ALA
351
n
350
ALA
351
A
VAL
352
n
351
VAL
352
A
VAL
353
n
352
VAL
353
A
TRP
354
n
353
TRP
354
A
GLU
355
n
354
GLU
355
A
LYS
356
n
355
LYS
356
A
THR
357
n
356
THR
357
A
HIS
358
n
357
HIS
358
A
LYS
359
n
358
LYS
359
A
ARG
360
n
359
ARG
360
A
LYS
361
n
360
LYS
361
A
LYS
362
n
361
LYS
362
A
author_and_software_defined_assembly
PISA
2
dimeric
7800
-76
27180
A
ASP
98
A
OD2
ASP
97
1_555
A
MG
402
C
MG
MG
1_555
A
ASP
102
A
OD2
ASP
101
1_555
73.9
A
ASP
98
A
OD2
ASP
97
1_555
A
MG
402
C
MG
MG
1_555
A
0MW
404
E
O1
0MW
1_555
87.1
A
ASP
102
A
OD2
ASP
101
1_555
A
MG
402
C
MG
MG
1_555
A
0MW
404
E
O1
0MW
1_555
160.4
A
ASP
98
A
OD2
ASP
97
1_555
A
MG
402
C
MG
MG
1_555
A
0MW
404
E
O4
0MW
1_555
93.6
A
ASP
102
A
OD2
ASP
101
1_555
A
MG
402
C
MG
MG
1_555
A
0MW
404
E
O4
0MW
1_555
81.6
A
0MW
404
E
O1
0MW
1_555
A
MG
402
C
MG
MG
1_555
A
0MW
404
E
O4
0MW
1_555
95.0
A
ASP
98
A
OD2
ASP
97
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
507
H
O
HOH
1_555
66.9
A
ASP
102
A
OD2
ASP
101
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
507
H
O
HOH
1_555
90.0
A
0MW
404
E
O1
0MW
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
507
H
O
HOH
1_555
86.9
A
0MW
404
E
O4
0MW
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
507
H
O
HOH
1_555
160.3
A
ASP
98
A
OD1
ASP
97
1_555
A
MG
403
D
MG
MG
1_555
A
ASP
102
A
OD2
ASP
101
1_555
81.2
A
ASP
98
A
OD1
ASP
97
1_555
A
MG
403
D
MG
MG
1_555
A
0MW
404
E
O4
0MW
1_555
114.7
A
ASP
102
A
OD2
ASP
101
1_555
A
MG
403
D
MG
MG
1_555
A
0MW
404
E
O4
0MW
1_555
85.4
A
ASP
98
A
OD1
ASP
97
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
508
H
O
HOH
1_555
91.4
A
ASP
102
A
OD2
ASP
101
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
508
H
O
HOH
1_555
171.5
A
0MW
404
E
O4
0MW
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
508
H
O
HOH
1_555
101.5
A
ASP
98
A
OD1
ASP
97
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
509
H
O
HOH
1_555
166.0
A
ASP
102
A
OD2
ASP
101
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
509
H
O
HOH
1_555
105.7
A
0MW
404
E
O4
0MW
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
509
H
O
HOH
1_555
78.4
A
HOH
508
H
O
HOH
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
509
H
O
HOH
1_555
80.7
A
ASP
98
A
OD1
ASP
97
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
510
H
O
HOH
1_555
82.4
A
ASP
102
A
OD2
ASP
101
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
510
H
O
HOH
1_555
98.5
A
0MW
404
E
O4
0MW
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
510
H
O
HOH
1_555
162.9
A
HOH
508
H
O
HOH
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
510
H
O
HOH
1_555
76.4
A
HOH
509
H
O
HOH
1_555
A
MG
403
D
MG
MG
1_555
A
HOH
510
H
O
HOH
1_555
84.5
A
ASP
250
A
OD2
ASP
249
1_555
A
MG
401
B
MG
MG
1_555
A
0MW
404
E
O5
0MW
1_555
82.0
A
ASP
250
A
OD2
ASP
249
1_555
A
MG
401
B
MG
MG
1_555
A
0MW
404
E
O2
0MW
1_555
86.8
A
0MW
404
E
O5
0MW
1_555
A
MG
401
B
MG
MG
1_555
A
0MW
404
E
O2
0MW
1_555
63.3
A
ASP
250
A
OD2
ASP
249
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
511
H
O
HOH
1_555
83.0
A
0MW
404
E
O5
0MW
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
511
H
O
HOH
1_555
139.6
A
0MW
404
E
O2
0MW
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
511
H
O
HOH
1_555
78.6
A
ASP
250
A
OD2
ASP
249
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
512
H
O
HOH
1_555
166.8
A
0MW
404
E
O5
0MW
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
512
H
O
HOH
1_555
98.4
A
0MW
404
E
O2
0MW
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
512
H
O
HOH
1_555
81.7
A
HOH
511
H
O
HOH
1_555
A
MG
401
B
MG
MG
1_555
A
HOH
512
H
O
HOH
1_555
88.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_444
-y-1,-x-1,-z-1/6
crystal symmetry operation
-29.2875000000
-50.7274380267
-65.6555000000
A
N
ARG
107
A
N
ARG
106
A
O
LYS
110
A
O
LYS
109
1
A
THR
120
67.36
155.53
1
A
ASP
181
-172.19
115.00
1
A
THR
208
-127.88
-54.62
1
A
TYR
213
-130.26
-56.25
1
A
CYS
274
-69.98
71.37
1
A
LYS
284
-147.62
-22.19
1
A
ASN
296
-140.62
-10.33
1
A
VAL
341
-63.38
-73.38
75.940
51.3117
16.320
0.6800
0.3400
0.0000
0.6800
0.0000
-1.0100
0.9100
0.8380
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
U VALUES : REFINED INDIVIDUALLY
0.3082
0.2317
0.2351
2.650
28.969
587
12120
4.8
95.1
0.3000
0.2219
1.000
0.500
0.7924
15.0140
0.3150
0.4277
RANDOM
1
THROUGHOUT
0.0
FOURIER SYNTHESIS
0.4280
0.8000
0.8000
1.4000
PDB ENTRY 4DWG
MAXIMUM LIKELIHOOD
MASK
2.650
28.969
23
2941
35
0
2883
0.008
0.022
2999
1.133
1.959
4068
4.665
5.000
364
38.526
24.317
139
15.737
15.000
513
18.180
15.000
15
0.077
0.200
446
0.004
0.021
2254
0.383
1.500
1811
0.728
2.000
2926
0.962
3.000
1188
1.622
4.500
1142
0.3770
0.2940
2.792
104
1651
1755
10
98.54
2.650
65.656
4E1E
12287
0.105
2.266
1
12.7
14.2
95.7
0.473
2.650
2.700
612
1.576
1
13.60
99.8
0.436
2.700
2.740
608
1.665
1
15.60
100.0
0.372
2.740
2.800
612
1.716
1
15.50
100.0
0.346
2.800
2.850
598
1.730
1
15.40
99.8
0.272
2.850
2.920
639
1.882
1
15.60
99.7
0.235
2.920
2.980
610
2.033
1
15.30
100.0
0.209
2.980
3.060
615
2.008
1
15.60
99.8
0.186
3.060
3.140
610
2.193
1
15.40
99.8
0.169
3.140
3.230
644
2.207
1
15.40
99.4
0.141
3.230
3.340
601
2.413
1
15.30
99.5
0.118
3.340
3.460
643
2.451
1
15.20
99.8
0.112
3.460
3.600
610
2.537
1
15.00
99.2
0.118
3.600
3.760
614
3.279
1
13.20
95.6
0.087
3.760
3.960
640
2.719
1
14.00
99.5
0.083
3.960
4.200
610
3.010
1
13.30
92.8
0.074
4.200
4.530
583
2.838
1
12.60
90.8
0.067
4.530
4.980
594
2.665
1
11.30
90.1
0.063
4.980
5.700
659
2.387
1
13.20
98.2
0.058
5.700
7.160
687
2.278
1
13.80
98.0
0.050
7.160
30.000
498
2.191
1
9.10
61.6
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
CBASS
data reduction
DENZO
phasing
MOLREP
Crystal structure of Trypanosome cruzi farnesyl diphosphate synthase in complex with [2-(n-hexylamino)ethane-1,1-diyl]bisphosphonic acid and Mg2+
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
SER
3
A
SER
2
HELX_P
A
TYR
26
A
TYR
25
1
1
24
A
ASP
29
A
ASP
28
HELX_P
A
LEU
45
A
LEU
44
1
2
17
A
TYR
49
A
TYR
48
HELX_P
A
ALA
64
A
ALA
63
1
3
16
A
ASP
69
A
ASP
68
HELX_P
A
GLY
103
A
GLY
102
1
4
35
A
TRP
113
A
TRP
112
HELX_P
A
PHE
116
A
PHE
115
5
5
4
A
VAL
119
A
VAL
118
HELX_P
A
ALA
144
A
ALA
143
1
6
26
A
PHE
148
A
PHE
147
HELX_P
A
THR
172
A
THR
171
1
7
25
A
ASP
176
A
ASP
175
HELX_P
A
LEU
180
A
LEU
179
5
8
5
A
THR
196
A
THR
195
HELX_P
A
THR
208
A
THR
207
1
9
13
A
THR
208
A
THR
207
HELX_P
A
TYR
213
A
TYR
212
1
10
6
A
TYR
213
A
TYR
212
HELX_P
A
VAL
223
A
VAL
222
1
11
11
A
GLU
231
A
GLU
230
HELX_P
A
THR
257
A
THR
256
1
12
27
A
PRO
258
A
PRO
257
HELX_P
A
GLY
263
A
GLY
262
1
13
6
A
SER
275
A
SER
274
HELX_P
A
GLY
283
A
GLY
282
1
14
9
A
ASN
286
A
ASN
285
HELX_P
A
ALA
295
A
ALA
294
1
15
10
A
ASP
301
A
ASP
300
HELX_P
A
ALA
315
A
ALA
314
1
16
15
A
ASN
316
A
ASN
315
HELX_P
A
VAL
341
A
VAL
340
1
17
26
A
SER
343
A
SER
342
HELX_P
A
LYS
359
A
LYS
358
1
18
17
metalc
2.412
A
ASP
98
A
OD2
ASP
97
1_555
A
MG
402
C
MG
MG
1_555
metalc
2.268
A
ASP
98
A
OD1
ASP
97
1_555
A
MG
403
D
MG
MG
1_555
metalc
2.198
A
ASP
102
A
OD2
ASP
101
1_555
A
MG
402
C
MG
MG
1_555
metalc
2.210
A
ASP
102
A
OD2
ASP
101
1_555
A
MG
403
D
MG
MG
1_555
metalc
2.224
A
ASP
250
A
OD2
ASP
249
1_555
A
MG
401
B
MG
MG
1_555
metalc
2.188
A
MG
401
B
MG
MG
1_555
A
0MW
404
E
O5
0MW
1_555
metalc
2.344
A
MG
401
B
MG
MG
1_555
A
0MW
404
E
O2
0MW
1_555
metalc
2.293
A
MG
401
B
MG
MG
1_555
A
HOH
511
H
O
HOH
1_555
metalc
2.050
A
MG
401
B
MG
MG
1_555
A
HOH
512
H
O
HOH
1_555
metalc
1.911
A
MG
402
C
MG
MG
1_555
A
0MW
404
E
O1
0MW
1_555
metalc
2.383
A
MG
402
C
MG
MG
1_555
A
0MW
404
E
O4
0MW
1_555
metalc
2.235
A
MG
402
C
MG
MG
1_555
A
HOH
507
H
O
HOH
1_555
metalc
2.207
A
MG
403
D
MG
MG
1_555
A
0MW
404
E
O4
0MW
1_555
metalc
2.174
A
MG
403
D
MG
MG
1_555
A
HOH
508
H
O
HOH
1_555
metalc
2.305
A
MG
403
D
MG
MG
1_555
A
HOH
509
H
O
HOH
1_555
metalc
2.195
A
MG
403
D
MG
MG
1_555
A
HOH
510
H
O
HOH
1_555
metalc
2.476
A
NA
406
G
NA
NA
1_555
A
HOH
514
H
O
HOH
1_555
TRANSFERASE/TRANSFERASE INHIBITOR
geranyl transferase, farnesyl pyrophosphate synthase, TRANSFERASE-TRANSFERASE INHIBITOR complex
A
LEU
262
A
LEU
261
1
A
GLY
263
A
GLY
262
-6.36
Q95WL3_TRYCR
UNP
1
2
Q95WL3
ASMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDAC
VGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDY
ATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHL
IGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADF
AAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK
2
362
4E1E
2
362
Q95WL3
A
1
1
361
2
anti-parallel
A
MET
106
A
MET
105
A
ARG
107
A
ARG
106
A
LYS
110
A
LYS
109
A
PRO
111
A
PRO
110
BINDING SITE FOR RESIDUE MG A 401
A
MG
401
Software
4
BINDING SITE FOR RESIDUE MG A 402
A
MG
402
Software
5
BINDING SITE FOR RESIDUE MG A 403
A
MG
403
Software
8
BINDING SITE FOR RESIDUE 0MW A 404
A
0MW
404
Software
18
BINDING SITE FOR RESIDUE IPE A 405
A
IPE
405
Software
11
BINDING SITE FOR RESIDUE NA A 406
A
NA
406
Software
2
A
ASP
250
A
ASP
249
4
1_555
A
0MW
404
E
0MW
4
1_555
A
HOH
511
H
HOH
4
1_555
A
HOH
512
H
HOH
4
1_555
A
ASP
98
A
ASP
97
5
1_555
A
ASP
102
A
ASP
101
5
1_555
A
MG
403
D
MG
5
1_555
A
0MW
404
E
0MW
5
1_555
A
HOH
507
H
HOH
5
1_555
A
ASP
98
A
ASP
97
8
1_555
A
ASP
102
A
ASP
101
8
1_555
A
ASP
170
A
ASP
169
8
1_555
A
MG
402
C
MG
8
1_555
A
0MW
404
E
0MW
8
1_555
A
HOH
508
H
HOH
8
1_555
A
HOH
509
H
HOH
8
1_555
A
HOH
510
H
HOH
8
1_555
A
TYR
94
A
TYR
93
18
1_555
A
ASP
98
A
ASP
97
18
1_555
A
ASP
102
A
ASP
101
18
1_555
A
ARG
107
A
ARG
106
18
1_555
A
GLN
167
A
GLN
166
18
1_555
A
LYS
207
A
LYS
206
18
1_555
A
GLN
247
A
GLN
246
18
1_555
A
ASP
250
A
ASP
249
18
1_555
A
LYS
264
A
LYS
263
18
1_555
A
MG
401
B
MG
18
1_555
A
MG
402
C
MG
18
1_555
A
MG
403
D
MG
18
1_555
A
IPE
405
F
IPE
18
1_555
A
HOH
507
H
HOH
18
1_555
A
HOH
508
H
HOH
18
1_555
A
HOH
509
H
HOH
18
1_555
A
HOH
511
H
HOH
18
1_555
A
HOH
512
H
HOH
18
1_555
A
GLY
47
A
GLY
46
11
1_555
A
LYS
48
A
LYS
47
11
1_555
A
ARG
51
A
ARG
50
11
1_555
A
GLN
91
A
GLN
90
11
1_555
A
ARG
108
A
ARG
107
11
1_555
A
TYR
211
A
TYR
210
11
1_555
A
PHE
246
A
PHE
245
11
1_555
A
GLN
247
A
GLN
246
11
1_555
A
ASP
250
A
ASP
249
11
1_555
A
LYS
264
A
LYS
263
11
1_555
A
0MW
404
E
0MW
11
1_555
A
HIS
141
A
HIS
140
2
1_555
A
HOH
514
H
HOH
2
1_555
178
P 61 2 2