0.012594
0.000000
0.000000
0.000000
0.008007
0.000000
0.000000
0.000000
0.015367
0.00000
0.00000
0.00000
Fairman, J.W.
Dautin, N.
Wojtowicz, D.
Wei, L.
Noinaj, N.
Barnard, T.J.
Udho, E.
Finkelstein, A.
Przytycka, T.M.
Cherezov, V.
Buchanan, S.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
79.404
124.885
65.073
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C21 H40 O4
356.540
(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
non-polymer
C21 H40 O4
356.540
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
O
N
242
N
O
N
243
N
C
N
244
S
C
N
245
N
O
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
C
N
280
N
H
N
281
N
C
N
282
N
H
N
283
N
C
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
C
N
289
N
C
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
C
N
295
N
C
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
C
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
C
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
C
N
321
R
C
N
322
N
O
N
323
N
O
N
324
N
O
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
N
411
N
O
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
R
C
N
425
N
O
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
N
N
438
S
C
N
439
N
C
N
440
N
O
N
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
N
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
C
N
475
N
O
N
476
N
O
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
S
C
N
490
N
C
N
491
N
O
N
492
N
C
N
493
N
C
N
494
N
C
N
495
N
O
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
Z
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
Z
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
Y
432
N
doub
Y
433
N
sing
Y
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
sing
Y
441
N
doub
N
442
N
sing
Y
443
N
doub
N
444
N
sing
Y
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
Y
460
N
doub
Y
461
N
sing
Y
462
N
sing
N
463
N
sing
Y
464
N
doub
N
465
N
sing
Y
466
N
doub
N
467
N
sing
Y
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
doub
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
UK
Structure
STRUE6
2005
0969-2126
20
1233
1243
10.1016/j.str.2012.04.011
22658748
Crystal Structures of the Outer Membrane Domain of Intimin and Invasin from Enterohemorrhagic E. coli and Enteropathogenic Y. pseudotuberculosis.
2012
10.2210/pdb4e1t/pdb
pdb_00004e1t
100
1
K-B pair of biomorph mirrors
CCD
2011-06-24
MARMOSAIC 300 mm CCD
double crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.034375
1.0
23-ID-B
APS
1.034375
SYNCHROTRON
APS BEAMLINE 23-ID-B
27860.967
Invasin
transmembrane domain (UNP residues 147-390)
L352F
1
man
polymer
356.540
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
12
syn
non-polymer
356.540
(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1
syn
non-polymer
18.015
water
117
nat
water
no
no
MNRFGTAQVNLNFDKNFSLKESSLDWLAPWYDSASFLFFSQLGIRNKDSRNTLNLGVGIRTLENGWLYGLNTFYDNDLTG
HNHRIGLGAEAWTDYLQLAANGYFRLNGWHSSRDFSDYKERPATGGDLRANAYLPALPQLGGKLMYEQYTGERVALFGKD
NLQRNPYAVTAGINYTPVPLLTVGVDQRMGKSSKHETQWNLQMNYRFGESFQSQLSPSAVAGTRLLAESRYNLVDRNNNI
VLEYQ
MNRFGTAQVNLNFDKNFSLKESSLDWLAPWYDSASFLFFSQLGIRNKDSRNTLNLGVGIRTLENGWLYGLNTFYDNDLTG
HNHRIGLGAEAWTDYLQLAANGYFRLNGWHSSRDFSDYKERPATGGDLRANAYLPALPQLGGKLMYEQYTGERVALFGKD
NLQRNPYAVTAGINYTPVPLLTVGVDQRMGKSSKHETQWNLQMNYRFGESFQSQLSPSAVAGTRLLAESRYNLVDRNNNI
VLEYQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
invasin, YPTB1668
633
Yersinia pseudotuberculosis
469008
Escherichia coli
BL21(DE3)
plasmid
pET
1
2.90
57.58
LIPIDIC CUBIC PHASE MONOOLEIN
4.0
0.05 M sodium citrate, pH 3.8-4.4, 0.2 M lithium sulfate, 23-35% PEG400, LIPIDIC CUBIC PHASE MONOOLEIN, temperature 294K
294
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-06-13
1
1
2012-07-25
1
2
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
intimin beta-domain
RCSB
Y
RCSB
2012-03-07
REL
REL
OLC
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
OLB
(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
HOH
water
4E1S
PDB ENTRY 4E1S
PDB
experimental model
OLC
1
2
OLC
OLC
401
A
OLC
2
2
OLC
OLC
402
A
OLC
3
2
OLC
OLC
403
A
OLC
4
2
OLC
OLC
404
A
OLC
5
3
OLB
OLB
405
A
OLC
6
2
OLC
OLC
406
A
OLC
7
2
OLC
OLC
407
A
OLC
8
2
OLC
OLC
408
A
OLC
9
2
OLC
OLC
409
A
OLC
10
2
OLC
OLC
410
A
OLC
411
2
OLC
OLC
411
A
OLC
12
2
OLC
OLC
412
A
OLC
13
2
OLC
OLC
413
A
HOH
1
4
HOH
HOH
501
A
HOH
2
4
HOH
HOH
502
A
HOH
3
4
HOH
HOH
503
A
HOH
4
4
HOH
HOH
504
A
HOH
5
4
HOH
HOH
505
A
HOH
6
4
HOH
HOH
506
A
HOH
7
4
HOH
HOH
507
A
HOH
8
4
HOH
HOH
508
A
HOH
9
4
HOH
HOH
509
A
HOH
10
4
HOH
HOH
510
A
HOH
11
4
HOH
HOH
511
A
HOH
12
4
HOH
HOH
512
A
HOH
13
4
HOH
HOH
513
A
HOH
14
4
HOH
HOH
514
A
HOH
15
4
HOH
HOH
515
A
HOH
16
4
HOH
HOH
516
A
HOH
17
4
HOH
HOH
517
A
HOH
18
4
HOH
HOH
518
A
HOH
19
4
HOH
HOH
519
A
HOH
20
4
HOH
HOH
520
A
HOH
21
4
HOH
HOH
521
A
HOH
22
4
HOH
HOH
522
A
HOH
23
4
HOH
HOH
523
A
HOH
24
4
HOH
HOH
524
A
HOH
25
4
HOH
HOH
525
A
HOH
26
4
HOH
HOH
526
A
HOH
27
4
HOH
HOH
527
A
HOH
28
4
HOH
HOH
528
A
HOH
30
4
HOH
HOH
529
A
HOH
32
4
HOH
HOH
530
A
HOH
33
4
HOH
HOH
531
A
HOH
34
4
HOH
HOH
532
A
HOH
35
4
HOH
HOH
533
A
HOH
36
4
HOH
HOH
534
A
HOH
37
4
HOH
HOH
535
A
HOH
38
4
HOH
HOH
536
A
HOH
39
4
HOH
HOH
537
A
HOH
41
4
HOH
HOH
538
A
HOH
42
4
HOH
HOH
539
A
HOH
43
4
HOH
HOH
540
A
HOH
44
4
HOH
HOH
541
A
HOH
45
4
HOH
HOH
542
A
HOH
47
4
HOH
HOH
543
A
HOH
48
4
HOH
HOH
544
A
HOH
49
4
HOH
HOH
545
A
HOH
50
4
HOH
HOH
546
A
HOH
51
4
HOH
HOH
547
A
HOH
52
4
HOH
HOH
548
A
HOH
53
4
HOH
HOH
549
A
HOH
54
4
HOH
HOH
550
A
HOH
55
4
HOH
HOH
551
A
HOH
552
4
HOH
HOH
552
A
HOH
57
4
HOH
HOH
553
A
HOH
58
4
HOH
HOH
554
A
HOH
59
4
HOH
HOH
555
A
HOH
61
4
HOH
HOH
556
A
HOH
63
4
HOH
HOH
557
A
HOH
64
4
HOH
HOH
558
A
HOH
65
4
HOH
HOH
559
A
HOH
66
4
HOH
HOH
560
A
HOH
67
4
HOH
HOH
561
A
HOH
69
4
HOH
HOH
562
A
HOH
71
4
HOH
HOH
563
A
HOH
72
4
HOH
HOH
564
A
HOH
73
4
HOH
HOH
565
A
HOH
74
4
HOH
HOH
566
A
HOH
75
4
HOH
HOH
567
A
HOH
76
4
HOH
HOH
568
A
HOH
77
4
HOH
HOH
569
A
HOH
78
4
HOH
HOH
570
A
HOH
79
4
HOH
HOH
571
A
HOH
81
4
HOH
HOH
572
A
HOH
82
4
HOH
HOH
573
A
HOH
83
4
HOH
HOH
574
A
HOH
84
4
HOH
HOH
575
A
HOH
85
4
HOH
HOH
576
A
HOH
86
4
HOH
HOH
577
A
HOH
87
4
HOH
HOH
578
A
HOH
88
4
HOH
HOH
579
A
HOH
89
4
HOH
HOH
580
A
HOH
90
4
HOH
HOH
581
A
HOH
93
4
HOH
HOH
582
A
HOH
94
4
HOH
HOH
583
A
HOH
95
4
HOH
HOH
584
A
HOH
96
4
HOH
HOH
585
A
HOH
104
4
HOH
HOH
586
A
HOH
105
4
HOH
HOH
587
A
HOH
106
4
HOH
HOH
588
A
HOH
107
4
HOH
HOH
589
A
HOH
108
4
HOH
HOH
590
A
HOH
109
4
HOH
HOH
591
A
HOH
110
4
HOH
HOH
592
A
HOH
111
4
HOH
HOH
593
A
HOH
113
4
HOH
HOH
594
A
HOH
115
4
HOH
HOH
595
A
HOH
116
4
HOH
HOH
596
A
HOH
118
4
HOH
HOH
597
A
HOH
119
4
HOH
HOH
598
A
HOH
120
4
HOH
HOH
599
A
HOH
122
4
HOH
HOH
600
A
HOH
123
4
HOH
HOH
601
A
HOH
124
4
HOH
HOH
602
A
HOH
125
4
HOH
HOH
603
A
HOH
126
4
HOH
HOH
604
A
HOH
128
4
HOH
HOH
605
A
HOH
129
4
HOH
HOH
606
A
HOH
130
4
HOH
HOH
607
A
HOH
131
4
HOH
HOH
608
A
HOH
132
4
HOH
HOH
609
A
HOH
133
4
HOH
HOH
610
A
HOH
134
4
HOH
HOH
611
A
HOH
135
4
HOH
HOH
612
A
HOH
136
4
HOH
HOH
613
A
HOH
137
4
HOH
HOH
614
A
HOH
138
4
HOH
HOH
615
A
HOH
139
4
HOH
HOH
616
A
HOH
140
4
HOH
HOH
617
A
MET
146
n
1
MET
146
A
ASN
147
n
2
ASN
147
A
ARG
148
n
3
ARG
148
A
PHE
149
n
4
PHE
149
A
GLY
150
n
5
GLY
150
A
THR
151
n
6
THR
151
A
ALA
152
n
7
ALA
152
A
GLN
153
n
8
GLN
153
A
VAL
154
n
9
VAL
154
A
ASN
155
n
10
ASN
155
A
LEU
156
n
11
LEU
156
A
ASN
157
n
12
ASN
157
A
PHE
158
n
13
PHE
158
A
ASP
159
n
14
ASP
159
A
LYS
160
n
15
LYS
160
A
ASN
161
n
16
ASN
161
A
PHE
162
n
17
PHE
162
A
SER
163
n
18
SER
163
A
LEU
164
n
19
LEU
164
A
LYS
165
n
20
LYS
165
A
GLU
166
n
21
GLU
166
A
SER
167
n
22
SER
167
A
SER
168
n
23
SER
168
A
LEU
169
n
24
LEU
169
A
ASP
170
n
25
ASP
170
A
TRP
171
n
26
TRP
171
A
LEU
172
n
27
LEU
172
A
ALA
173
n
28
ALA
173
A
PRO
174
n
29
PRO
174
A
TRP
175
n
30
TRP
175
A
TYR
176
n
31
TYR
176
A
ASP
177
n
32
ASP
177
A
SER
178
n
33
SER
178
A
ALA
179
n
34
ALA
179
A
SER
180
n
35
SER
180
A
PHE
181
n
36
PHE
181
A
LEU
182
n
37
LEU
182
A
PHE
183
n
38
PHE
183
A
PHE
184
n
39
PHE
184
A
SER
185
n
40
SER
185
A
GLN
186
n
41
GLN
186
A
LEU
187
n
42
LEU
187
A
GLY
188
n
43
GLY
188
A
ILE
189
n
44
ILE
189
A
ARG
190
n
45
ARG
190
A
ASN
191
n
46
ASN
191
A
LYS
192
n
47
LYS
192
A
ASP
193
n
48
ASP
193
A
SER
194
n
49
SER
194
A
ARG
195
n
50
ARG
195
A
ASN
196
n
51
ASN
196
A
THR
197
n
52
THR
197
A
LEU
198
n
53
LEU
198
A
ASN
199
n
54
ASN
199
A
LEU
200
n
55
LEU
200
A
GLY
201
n
56
GLY
201
A
VAL
202
n
57
VAL
202
A
GLY
203
n
58
GLY
203
A
ILE
204
n
59
ILE
204
A
ARG
205
n
60
ARG
205
A
THR
206
n
61
THR
206
A
LEU
207
n
62
LEU
207
A
GLU
208
n
63
GLU
208
A
ASN
209
n
64
ASN
209
A
GLY
210
n
65
GLY
210
A
TRP
211
n
66
TRP
211
A
LEU
212
n
67
LEU
212
A
TYR
213
n
68
TYR
213
A
GLY
214
n
69
GLY
214
A
LEU
215
n
70
LEU
215
A
ASN
216
n
71
ASN
216
A
THR
217
n
72
THR
217
A
PHE
218
n
73
PHE
218
A
TYR
219
n
74
TYR
219
A
ASP
220
n
75
ASP
220
A
ASN
221
n
76
ASN
221
A
ASP
222
n
77
ASP
222
A
LEU
223
n
78
LEU
223
A
THR
224
n
79
THR
224
A
GLY
225
n
80
GLY
225
A
HIS
226
n
81
HIS
226
A
ASN
227
n
82
ASN
227
A
HIS
228
n
83
HIS
228
A
ARG
229
n
84
ARG
229
A
ILE
230
n
85
ILE
230
A
GLY
231
n
86
GLY
231
A
LEU
232
n
87
LEU
232
A
GLY
233
n
88
GLY
233
A
ALA
234
n
89
ALA
234
A
GLU
235
n
90
GLU
235
A
ALA
236
n
91
ALA
236
A
TRP
237
n
92
TRP
237
A
THR
238
n
93
THR
238
A
ASP
239
n
94
ASP
239
A
TYR
240
n
95
TYR
240
A
LEU
241
n
96
LEU
241
A
GLN
242
n
97
GLN
242
A
LEU
243
n
98
LEU
243
A
ALA
244
n
99
ALA
244
A
ALA
245
n
100
ALA
245
A
ASN
246
n
101
ASN
246
A
GLY
247
n
102
GLY
247
A
TYR
248
n
103
TYR
248
A
PHE
249
n
104
PHE
249
A
ARG
250
n
105
ARG
250
A
LEU
251
n
106
LEU
251
A
ASN
252
n
107
ASN
252
A
GLY
253
n
108
GLY
253
A
TRP
254
n
109
TRP
254
A
HIS
255
n
110
HIS
255
A
SER
256
n
111
SER
256
A
SER
257
n
112
SER
257
A
ARG
258
n
113
ARG
258
A
ASP
259
n
114
ASP
259
A
PHE
260
n
115
PHE
260
A
SER
261
n
116
SER
261
A
ASP
262
n
117
ASP
262
A
TYR
263
n
118
TYR
263
A
LYS
264
n
119
LYS
264
A
GLU
265
n
120
GLU
265
A
ARG
266
n
121
ARG
266
A
PRO
267
n
122
PRO
267
A
ALA
268
n
123
ALA
268
A
THR
269
n
124
THR
269
A
GLY
270
n
125
GLY
270
A
GLY
271
n
126
GLY
271
A
ASP
272
n
127
ASP
272
A
LEU
273
n
128
LEU
273
A
ARG
274
n
129
ARG
274
A
ALA
275
n
130
ALA
275
A
ASN
276
n
131
ASN
276
A
ALA
277
n
132
ALA
277
A
TYR
278
n
133
TYR
278
A
LEU
279
n
134
LEU
279
A
PRO
280
n
135
PRO
280
A
ALA
281
n
136
ALA
281
A
LEU
282
n
137
LEU
282
A
PRO
283
n
138
PRO
283
A
GLN
284
n
139
GLN
284
A
LEU
285
n
140
LEU
285
A
GLY
286
n
141
GLY
286
A
GLY
287
n
142
GLY
287
A
LYS
288
n
143
LYS
288
A
LEU
289
n
144
LEU
289
A
MET
290
n
145
MET
290
A
TYR
291
n
146
TYR
291
A
GLU
292
n
147
GLU
292
A
GLN
293
n
148
GLN
293
A
TYR
294
n
149
TYR
294
A
THR
295
n
150
THR
295
A
GLY
296
n
151
GLY
296
A
GLU
297
n
152
GLU
297
A
ARG
298
n
153
ARG
298
A
VAL
299
n
154
VAL
299
A
ALA
300
n
155
ALA
300
A
LEU
301
n
156
LEU
301
A
PHE
302
n
157
PHE
302
A
GLY
303
n
158
GLY
303
A
LYS
304
n
159
LYS
304
A
ASP
305
n
160
ASP
305
A
ASN
306
n
161
ASN
306
A
LEU
307
n
162
LEU
307
A
GLN
308
n
163
GLN
308
A
ARG
309
n
164
ARG
309
A
ASN
310
n
165
ASN
310
A
PRO
311
n
166
PRO
311
A
TYR
312
n
167
TYR
312
A
ALA
313
n
168
ALA
313
A
VAL
314
n
169
VAL
314
A
THR
315
n
170
THR
315
A
ALA
316
n
171
ALA
316
A
GLY
317
n
172
GLY
317
A
ILE
318
n
173
ILE
318
A
ASN
319
n
174
ASN
319
A
TYR
320
n
175
TYR
320
A
THR
321
n
176
THR
321
A
PRO
322
n
177
PRO
322
A
VAL
323
n
178
VAL
323
A
PRO
324
n
179
PRO
324
A
LEU
325
n
180
LEU
325
A
LEU
326
n
181
LEU
326
A
THR
327
n
182
THR
327
A
VAL
328
n
183
VAL
328
A
GLY
329
n
184
GLY
329
A
VAL
330
n
185
VAL
330
A
ASP
331
n
186
ASP
331
A
GLN
332
n
187
GLN
332
A
ARG
333
n
188
ARG
333
A
MET
334
n
189
MET
334
A
GLY
335
n
190
GLY
335
A
LYS
336
n
191
LYS
336
A
SER
337
n
192
SER
337
A
SER
338
n
193
SER
338
A
LYS
339
n
194
LYS
339
A
HIS
340
n
195
HIS
340
A
GLU
341
n
196
GLU
341
A
THR
342
n
197
THR
342
A
GLN
343
n
198
GLN
343
A
TRP
344
n
199
TRP
344
A
ASN
345
n
200
ASN
345
A
LEU
346
n
201
LEU
346
A
GLN
347
n
202
GLN
347
A
MET
348
n
203
MET
348
A
ASN
349
n
204
ASN
349
A
TYR
350
n
205
TYR
350
A
ARG
351
n
206
ARG
351
A
PHE
352
n
207
PHE
352
A
GLY
353
n
208
GLY
353
A
GLU
354
n
209
GLU
354
A
SER
355
n
210
SER
355
A
PHE
356
n
211
PHE
356
A
GLN
357
n
212
GLN
357
A
SER
358
n
213
SER
358
A
GLN
359
n
214
GLN
359
A
LEU
360
n
215
LEU
360
A
SER
361
n
216
SER
361
A
PRO
362
n
217
PRO
362
A
SER
363
n
218
SER
363
A
ALA
364
n
219
ALA
364
A
VAL
365
n
220
VAL
365
A
ALA
366
n
221
ALA
366
A
GLY
367
n
222
GLY
367
A
THR
368
n
223
THR
368
A
ARG
369
n
224
ARG
369
A
LEU
370
n
225
LEU
370
A
LEU
371
n
226
LEU
371
A
ALA
372
n
227
ALA
372
A
GLU
373
n
228
GLU
373
A
SER
374
n
229
SER
374
A
ARG
375
n
230
ARG
375
A
TYR
376
n
231
TYR
376
A
ASN
377
n
232
ASN
377
A
LEU
378
n
233
LEU
378
A
VAL
379
n
234
VAL
379
A
ASP
380
n
235
ASP
380
A
ARG
381
n
236
ARG
381
A
ASN
382
n
237
ASN
382
A
ASN
383
n
238
ASN
383
A
ASN
384
n
239
ASN
384
A
ILE
385
n
240
ILE
385
A
VAL
386
n
241
VAL
386
A
LEU
387
n
242
LEU
387
A
GLU
388
n
243
GLU
388
A
TYR
389
n
244
TYR
389
A
GLN
390
n
245
GLN
390
A
5.3904
3.3922
3.4824
9.3814
6.4575
7.3655
0.1125
-0.1072
-0.1053
-0.5473
0.0528
0.0423
-0.2469
-0.3476
-0.1652
0.0745
0.0203
-0.0064
0.2056
0.0793
0.0685
refined
-22.5865
30.1543
7.0525
X-RAY DIFFRACTION
8.4427
7.9412
2.2063
11.8986
2.7623
2.4995
-0.0411
-0.0830
0.1186
-0.1995
-0.0039
0.0982
-0.0850
-0.1305
0.0451
0.0286
0.0279
-0.0055
0.1260
-0.0402
0.0006
refined
-12.2450
33.0688
13.4330
X-RAY DIFFRACTION
1.2928
-0.8204
0.3397
3.1343
-0.8692
2.4255
0.0351
0.0728
-0.0607
-0.2758
0.0049
-0.0085
0.3247
0.0131
-0.0401
0.0639
-0.0198
-0.0151
0.0738
-0.0211
0.0363
refined
-8.2272
24.9394
4.8581
X-RAY DIFFRACTION
0.1419
5.8049
-1.6023
9.6983
-4.5366
19.6212
0.3165
-0.6737
-0.3176
-0.4300
-0.6096
0.2199
0.6296
0.4356
0.2931
0.4000
-0.0726
-0.1909
0.1108
0.0105
0.0984
refined
-9.4451
9.1942
-2.2111
X-RAY DIFFRACTION
1.6439
-0.5007
0.0577
1.4118
-0.1931
1.2268
0.0557
0.0236
-0.0984
-0.1277
-0.0773
0.4617
0.0444
-0.1949
0.0216
0.1436
-0.0050
-0.0596
0.1669
-0.0033
0.1349
refined
-18.9571
31.3423
1.9355
X-RAY DIFFRACTION
A
146
A
163
X-RAY DIFFRACTION
1
A
164
A
192
X-RAY DIFFRACTION
2
A
193
A
295
X-RAY DIFFRACTION
3
A
298
A
311
X-RAY DIFFRACTION
4
A
312
A
390
X-RAY DIFFRACTION
5
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
173
A
N
ALA
28
A
O
SER
185
A
O
SER
40
A
N
GLY
188
A
N
GLY
43
A
O
ASN
199
A
O
ASN
54
A
N
ILE
204
A
N
ILE
59
A
O
LEU
215
A
O
LEU
70
A
N
ASP
220
A
N
ASP
75
A
O
ARG
229
A
O
ARG
84
A
N
ILE
230
A
N
ILE
85
A
O
PHE
249
A
O
PHE
104
A
N
ALA
244
A
N
ALA
99
A
O
ARG
274
A
O
ARG
129
A
N
ALA
277
A
N
ALA
132
A
O
GLY
287
A
O
GLY
142
A
N
GLY
286
A
N
GLY
141
A
O
ASN
319
A
O
ASN
174
A
N
TYR
320
A
N
TYR
175
A
O
VAL
328
A
O
VAL
183
A
N
ASP
331
A
N
ASP
186
A
O
GLN
343
A
O
GLN
198
A
O
TYR
350
A
O
TYR
205
A
N
ALA
152
A
N
ALA
7
A
N
HIS
255
A
N
HIS
110
A
O
GLU
265
A
O
GLU
120
A
N
ARG
266
A
N
ARG
121
A
O
GLU
388
A
O
GLU
243
1
A
CG
LYS
165
A
CG
LYS
20
1
Y
1
A
CD
LYS
165
A
CD
LYS
20
1
Y
1
A
CE
LYS
165
A
CE
LYS
20
1
Y
1
A
NZ
LYS
165
A
NZ
LYS
20
1
Y
1
A
CG
ARG
298
A
CG
ARG
153
1
Y
1
A
CD
ARG
298
A
CD
ARG
153
1
Y
1
A
NE
ARG
298
A
NE
ARG
153
1
Y
1
A
CZ
ARG
298
A
CZ
ARG
153
1
Y
1
A
NH1
ARG
298
A
NH1
ARG
153
1
Y
1
A
NH2
ARG
298
A
NH2
ARG
153
1
Y
1
A
C18
OLC
402
C
C18
OLC
1
1
N
1
A
C17
OLC
402
C
C17
OLC
1
1
N
1
A
C16
OLC
402
C
C16
OLC
1
1
N
1
A
C15
OLC
402
C
C15
OLC
1
1
N
1
A
C13
OLC
402
C
C13
OLC
1
1
N
1
A
C14
OLC
402
C
C14
OLC
1
1
N
1
A
C18
OLC
407
H
C18
OLC
1
1
N
1
A
C24
OLC
407
H
C24
OLC
1
1
N
1
A
C21
OLC
407
H
C21
OLC
1
1
N
1
A
C22
OLC
407
H
C22
OLC
1
1
N
1
A
O19
OLC
407
H
O19
OLC
1
1
N
1
A
O25
OLC
407
H
O25
OLC
1
1
N
1
A
O23
OLC
407
H
O23
OLC
1
1
N
1
A
O20
OLC
407
H
O20
OLC
1
1
N
1
A
C18
OLC
412
M
C18
OLC
1
1
N
1
A
C17
OLC
412
M
C17
OLC
1
1
N
1
A
C24
OLC
412
M
C24
OLC
1
1
N
1
A
C16
OLC
412
M
C16
OLC
1
1
N
1
A
C15
OLC
412
M
C15
OLC
1
1
N
1
A
C21
OLC
412
M
C21
OLC
1
1
N
1
A
C22
OLC
412
M
C22
OLC
1
1
N
1
A
O19
OLC
412
M
O19
OLC
1
1
N
1
A
O25
OLC
412
M
O25
OLC
1
1
N
1
A
O23
OLC
412
M
O23
OLC
1
1
N
1
A
O20
OLC
412
M
O20
OLC
1
1
N
1
A
C18
OLC
413
N
C18
OLC
1
1
N
1
A
C10
OLC
413
N
C10
OLC
1
1
N
1
A
C9
OLC
413
N
C9
OLC
1
1
N
1
A
C17
OLC
413
N
C17
OLC
1
1
N
1
A
C11
OLC
413
N
C11
OLC
1
1
N
1
A
C8
OLC
413
N
C8
OLC
1
1
N
1
A
C16
OLC
413
N
C16
OLC
1
1
N
1
A
C12
OLC
413
N
C12
OLC
1
1
N
1
A
C7
OLC
413
N
C7
OLC
1
1
N
1
A
C15
OLC
413
N
C15
OLC
1
1
N
1
A
C13
OLC
413
N
C13
OLC
1
1
N
1
A
C6
OLC
413
N
C6
OLC
1
1
N
1
A
C14
OLC
413
N
C14
OLC
1
1
N
1
A
C5
OLC
413
N
C5
OLC
1
1
N
1
A
C4
OLC
413
N
C4
OLC
1
1
N
1
A
C3
OLC
413
N
C3
OLC
1
1
N
1
A
C2
OLC
413
N
C2
OLC
1
1
N
1
A
A
O
O
HOH
HOH
531
532
1.75
1
A
A
O
O
HOH
HOH
540
541
2.07
1
A
A
OD2
NH2
ASP
ARG
177
375
2.11
1
-3.19
0.50
120.30
117.11
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
148
148
148
N
1
14.58
2.30
115.30
129.88
A
A
A
CA
CB
CG
LEU
LEU
LEU
207
207
207
N
1
A
ASN
147
-169.25
-47.54
1
A
ALA
179
-54.72
-6.88
1
A
TYR
240
74.02
-0.06
1
A
ASP
262
89.85
-9.56
1
A
LEU
282
-160.44
78.28
1
A
ALA
300
-92.42
48.28
1
A
ASN
306
-147.54
47.24
96.440
50.288
16.670
1.4600
0.0000
0.0000
1.1500
0.0000
-2.6100
0.9550
0.8930
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
U VALUES : RESIDUAL ONLY
0.2596
0.1880
0.1915
0.1915
2.263
29.787
709
15222
14016
5.1
90.55
1.000
1.000
15.1930
0.1770
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.3500
0.2600
0.8000
0.8000
1.4000
PDB ENTRY 4E1S
MAXIMUM LIKELIHOOD
MASK
2.263
29.787
117
2360
283
0
1960
0.017
0.021
2279
1.954
2.032
3003
6.926
5.000
243
42.565
23.945
109
17.787
15.000
314
21.553
15.000
15
0.130
0.200
293
0.010
0.021
1679
0.782
1.500
1209
1.444
2.000
1922
2.566
3.000
1070
3.913
4.500
1081
0.4200
0.2700
2.322
30
626
656
20
57.9
2.263
67.007
4E1T
15222
14111
2.30
2.30
0.133
1.008
1
8.2
5.1
92.7
0.599
2.263
2.380
1133
1.058
1
2.9
76.2
0.593
2.380
2.480
1251
1.044
1
3.4
83.0
0.562
2.480
2.590
1351
1.033
1
4.1
90.1
0.463
2.590
2.730
1423
1.014
1
5.0
94.9
0.349
2.730
2.900
1482
1.005
1
5.4
98.7
0.283
2.900
3.120
1521
1.003
1
5.9
99.9
0.184
3.120
3.440
1514
1.012
1
6.0
100.0
0.134
3.440
3.930
1522
1.021
1
6.0
100.0
0.092
3.930
4.950
1300
0.986
1
5.4
83.8
0.095
4.950
50.000
1614
0.966
1
5.7
99.3
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.5.0109
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
Blu-Ice
X-ray crystal structure of the transmembrane beta-domain from invasin from Yersinia pseudotuberculosis
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
4
N
N
A
LYS
336
A
LYS
191
HELX_P
A
SER
338
A
SER
193
5
1
3
A
SER
355
A
SER
210
HELX_P
A
LEU
360
A
LEU
215
1
2
6
A
SER
361
A
SER
216
HELX_P
A
SER
363
A
SER
218
5
3
3
A
ALA
364
A
ALA
219
HELX_P
A
ARG
369
A
ARG
224
1
4
6
A
LEU
370
A
LEU
225
HELX_P
A
ARG
375
A
ARG
230
1
5
6
CELL ADHESION
outer membrane beta barrel, adhesin, integrin, CELL ADHESION
INVA_YERPS
UNP
1
147
P11922
NRFGTAQVNLNFDKNFSLKESSLDWLAPWYDSASFLFFSQLGIRNKDSRNTLNLGVGIRTLENGWLYGLNTFYDNDLTGH
NHRIGLGAEAWTDYLQLAANGYFRLNGWHSSRDFSDYKERPATGGDLRANAYLPALPQLGGKLMYEQYTGERVALFGKDN
LQRNPYAVTAGINYTPVPLLTVGVDQRMGKSSKHETQWNLQMNYRLGESFQSQLSPSAVAGTRLLAESRYNLVDRNNNIV
LEYQ
147
390
4E1T
147
390
P11922
A
1
2
245
1
initiating methionine
MET
146
4E1T
A
P11922
UNP
1
1
LEU
engineered mutation
PHE
352
4E1T
A
P11922
UNP
352
207
13
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
151
A
THR
6
A
PHE
158
A
PHE
13
A
LEU
164
A
LEU
19
A
ASP
177
A
ASP
32
A
PHE
181
A
PHE
36
A
LYS
192
A
LYS
47
A
ARG
195
A
ARG
50
A
GLU
208
A
GLU
63
A
TRP
211
A
TRP
66
A
ASP
222
A
ASP
77
A
ASN
227
A
ASN
82
A
THR
238
A
THR
93
A
LEU
241
A
LEU
96
A
ARG
250
A
ARG
105
A
GLY
270
A
GLY
125
A
LEU
279
A
LEU
134
A
LEU
282
A
LEU
137
A
TYR
294
A
TYR
149
A
TYR
312
A
TYR
167
A
VAL
323
A
VAL
178
A
LEU
326
A
LEU
181
A
MET
334
A
MET
189
A
HIS
340
A
HIS
195
A
ARG
351
A
ARG
206
A
THR
151
A
THR
6
A
PHE
158
A
PHE
13
A
HIS
255
A
HIS
110
A
SER
256
A
SER
111
A
LYS
264
A
LYS
119
A
PRO
267
A
PRO
122
A
LEU
387
A
LEU
242
A
GLN
390
A
GLN
245
BINDING SITE FOR RESIDUE OLC A 401
A
OLC
401
Software
8
BINDING SITE FOR RESIDUE OLC A 402
A
OLC
402
Software
10
BINDING SITE FOR RESIDUE OLC A 403
A
OLC
403
Software
3
BINDING SITE FOR RESIDUE OLC A 404
A
OLC
404
Software
7
BINDING SITE FOR RESIDUE OLB A 405
A
OLB
405
Software
6
BINDING SITE FOR RESIDUE OLC A 406
A
OLC
406
Software
5
BINDING SITE FOR RESIDUE OLC A 407
A
OLC
407
Software
4
BINDING SITE FOR RESIDUE OLC A 408
A
OLC
408
Software
7
BINDING SITE FOR RESIDUE OLC A 409
A
OLC
409
Software
11
BINDING SITE FOR RESIDUE OLC A 410
A
OLC
410
Software
8
BINDING SITE FOR RESIDUE OLC A 411
A
OLC
411
Software
9
BINDING SITE FOR RESIDUE OLC A 412
A
OLC
412
Software
7
BINDING SITE FOR RESIDUE OLC A 413
A
OLC
413
Software
4
A
ASN
221
A
ASN
76
8
1_555
A
HIS
226
A
HIS
81
8
1_555
A
HIS
228
A
HIS
83
8
1_555
A
ARG
250
A
ARG
105
8
3_555
A
TYR
320
A
TYR
175
8
6_455
A
OLC
402
C
OLC
8
3_555
A
HOH
524
O
HOH
8
1_555
A
HOH
564
O
HOH
8
3_555
A
LEU
200
A
LEU
55
10
3_555
A
THR
217
A
THR
72
10
3_555
A
THR
217
A
THR
72
10
1_555
A
PHE
218
A
PHE
73
10
3_555
A
TYR
219
A
TYR
74
10
3_555
A
LEU
232
A
LEU
87
10
1_555
A
ARG
250
A
ARG
105
10
1_555
A
OLC
401
B
OLC
10
3_555
A
OLC
409
J
OLC
10
3_555
A
OLC
411
L
OLC
10
1_555
A
TRP
211
A
TRP
66
3
1_555
A
TYR
213
A
TYR
68
3
1_555
A
OLB
405
F
OLB
3
1_555
A
LYS
160
A
LYS
15
7
6_455
A
TRP
175
A
TRP
30
7
1_555
A
LEU
215
A
LEU
70
7
3_555
A
LEU
232
A
LEU
87
7
3_555
A
OLB
405
F
OLB
7
3_555
A
OLC
409
J
OLC
7
1_555
A
OLC
411
L
OLC
7
3_555
A
THR
206
A
THR
61
6
1_555
A
GLY
214
A
GLY
69
6
1_555
A
LEU
215
A
LEU
70
6
1_555
A
OLC
403
D
OLC
6
1_555
A
OLC
404
E
OLC
6
3_555
A
HOH
561
O
HOH
6
1_555
A
LEU
169
A
LEU
24
5
6_454
A
ILE
189
A
ILE
44
5
6_454
A
THR
238
A
THR
93
5
1_555
A
ASP
239
A
ASP
94
5
1_555
A
ILE
318
A
ILE
173
5
1_555
A
ALA
316
A
ALA
171
4
1_555
A
ILE
318
A
ILE
173
4
1_555
A
VAL
330
A
VAL
185
4
1_555
A
GLN
332
A
GLN
187
4
1_555
A
VAL
154
A
VAL
9
7
1_555
A
TYR
312
A
TYR
167
7
6_455
A
GLY
335
A
GLY
190
7
6_455
A
MET
348
A
MET
203
7
1_555
A
TYR
350
A
TYR
205
7
1_555
A
PHE
356
A
PHE
211
7
1_555
A
HOH
576
O
HOH
7
1_555
A
PHE
149
A
PHE
4
11
1_555
A
TRP
171
A
TRP
26
11
1_555
A
ALA
173
A
ALA
28
11
1_555
A
PRO
174
A
PRO
29
11
1_555
A
TRP
175
A
TRP
30
11
1_555
A
SER
185
A
SER
40
11
1_555
A
GLY
203
A
GLY
58
11
3_555
A
THR
217
A
THR
72
11
3_555
A
TRP
344
A
TRP
199
11
6_455
A
OLC
402
C
OLC
11
3_555
A
OLC
404
E
OLC
11
1_555
A
VAL
154
A
VAL
9
8
1_555
A
LEU
164
A
LEU
19
8
1_555
A
LYS
165
A
LYS
20
8
1_555
A
SER
167
A
SER
22
8
1_555
A
ASN
191
A
ASN
46
8
1_555
A
ASN
196
A
ASN
51
8
1_555
A
OLC
413
N
OLC
8
1_555
A
HOH
530
O
HOH
8
1_555
A
PHE
249
A
PHE
104
9
1_555
A
ARG
250
A
ARG
105
9
1_555
A
TRP
254
A
TRP
109
9
1_555
A
ARG
266
A
ARG
121
9
1_555
A
TYR
320
A
TYR
175
9
8_555
A
GLN
390
A
GLN
245
9
1_555
A
OLC
402
C
OLC
9
1_555
A
OLC
404
E
OLC
9
3_555
A
OLC
412
M
OLC
9
1_555
A
LEU
232
A
LEU
87
7
1_555
A
ALA
234
A
ALA
89
7
1_555
A
ALA
245
A
ALA
100
7
1_555
A
ASN
246
A
ASN
101
7
1_555
A
GLY
247
A
GLY
102
7
1_555
A
LEU
273
A
LEU
128
7
1_555
A
OLC
411
L
OLC
7
1_555
A
ASN
191
A
ASN
46
4
1_555
A
SER
194
A
SER
49
4
1_555
A
ASN
196
A
ASN
51
4
1_555
A
OLC
410
K
OLC
4
1_555
20
C 2 2 21