0.014598
0.000000
0.000000
-0.000000
0.014596
0.000000
0.000000
-0.000000
0.012274
0.000000
0.000000
0.000000
Rudzka, K.
Amzel, L.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
68.503
68.513
81.472
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cu 2
63.546
COPPER (II) ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Ni 2
58.693
NICKEL (II) ION
non-polymer
H2 O2
34.015
HYDROGEN PEROXIDE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
GW
J.Biol.Inorg.Chem.
JJBCFA
2154
0949-8257
18
223
232
10.1007/s00775-012-0967-z
23247335
Coordination of peroxide to the Cu(M) center of peptidylglycine alpha-hydroxylating monooxygenase (PHM): structural and computational study.
2013
100
1
CCD
2011-04-21
ADSC QUANTUM 210
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
X6A
NSLS
0.979
SYNCHROTRON
NSLS BEAMLINE X6A
34773.883
Peptidyl-glycine alpha-amidating monooxygenase
1.14.17.3
UNP residues 45-356
1
man
polymer
63.546
COPPER (II) ION
2
syn
non-polymer
58.693
NICKEL (II) ION
1
syn
non-polymer
34.015
HYDROGEN PEROXIDE
1
syn
non-polymer
92.094
GLYCEROL
4
syn
non-polymer
18.015
water
149
nat
water
PAM, Peptidylglycine alpha-hydroxylating monooxygenase, PHM, Peptidyl-alpha-hydroxyglycine alpha-amidating lyase, Peptidylamidoglycolate lyase, PAL
no
no
NECLGTIGPVTPLDASDFALDIRMPGVTPKESDTYFCMSMRLPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYW
FCDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGM
YLMMSVDTVIPPGEKVVNADISCQYKMYPMHVFAYRVHTHHLGKVVSGYRVRNGQWTLIGRQNPQLPQAFYPVEHPVDVT
FGDILAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAEANIPIPV
NECLGTIGPVTPLDASDFALDIRMPGVTPKESDTYFCMSMRLPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYW
FCDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGM
YLMMSVDTVIPPGEKVVNADISCQYKMYPMHVFAYRVHTHHLGKVVSGYRVRNGQWTLIGRQNPQLPQAFYPVEHPVDVT
FGDILAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAEANIPIPV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
brown rat,rat,rats
sample
Pam
10116
Rattus norvegicus
10029
Cricetulus griseus
1
2.75
55.26
VAPOR DIFFUSION, HANGING DROP
5.5
pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
software
repository
Initial release
Database references
Refinement description
1
0
2013-01-23
1
1
2013-07-03
1
2
2017-11-15
RCSB
Y
RCSB
2012-03-13
REL
REL
CU
COPPER (II) ION
NI
NICKEL (II) ION
PEO
HYDROGEN PEROXIDE
GOL
GLYCEROL
HOH
water
CU
357
2
CU
CU
401
A
CU
358
2
CU
CU
402
A
NI
359
3
NI
NI
403
A
PEO
1
4
PEO
PEO
404
A
GOL
1
5
GOL
GOL
405
A
GOL
2
5
GOL
GOL
406
A
GOL
3
5
GOL
GOL
407
A
GOL
5
5
GOL
GOL
408
A
HOH
1
6
HOH
HOH
501
A
HOH
2
6
HOH
HOH
502
A
HOH
3
6
HOH
HOH
503
A
HOH
4
6
HOH
HOH
504
A
HOH
5
6
HOH
HOH
505
A
HOH
6
6
HOH
HOH
506
A
HOH
7
6
HOH
HOH
507
A
HOH
8
6
HOH
HOH
508
A
HOH
9
6
HOH
HOH
509
A
HOH
10
6
HOH
HOH
510
A
HOH
11
6
HOH
HOH
511
A
HOH
12
6
HOH
HOH
512
A
HOH
13
6
HOH
HOH
513
A
HOH
14
6
HOH
HOH
514
A
HOH
15
6
HOH
HOH
515
A
HOH
16
6
HOH
HOH
516
A
HOH
18
6
HOH
HOH
517
A
HOH
19
6
HOH
HOH
518
A
HOH
20
6
HOH
HOH
519
A
HOH
21
6
HOH
HOH
520
A
HOH
24
6
HOH
HOH
521
A
HOH
25
6
HOH
HOH
522
A
HOH
26
6
HOH
HOH
523
A
HOH
27
6
HOH
HOH
524
A
HOH
30
6
HOH
HOH
525
A
HOH
31
6
HOH
HOH
526
A
HOH
32
6
HOH
HOH
527
A
HOH
33
6
HOH
HOH
528
A
HOH
34
6
HOH
HOH
529
A
HOH
36
6
HOH
HOH
530
A
HOH
37
6
HOH
HOH
531
A
HOH
38
6
HOH
HOH
532
A
HOH
40
6
HOH
HOH
533
A
HOH
42
6
HOH
HOH
534
A
HOH
43
6
HOH
HOH
535
A
HOH
44
6
HOH
HOH
536
A
HOH
45
6
HOH
HOH
537
A
HOH
46
6
HOH
HOH
538
A
HOH
47
6
HOH
HOH
539
A
HOH
48
6
HOH
HOH
540
A
HOH
49
6
HOH
HOH
541
A
HOH
53
6
HOH
HOH
542
A
HOH
54
6
HOH
HOH
543
A
HOH
56
6
HOH
HOH
544
A
HOH
57
6
HOH
HOH
545
A
HOH
59
6
HOH
HOH
546
A
HOH
60
6
HOH
HOH
547
A
HOH
61
6
HOH
HOH
548
A
HOH
62
6
HOH
HOH
549
A
HOH
63
6
HOH
HOH
550
A
HOH
64
6
HOH
HOH
551
A
HOH
72
6
HOH
HOH
552
A
HOH
75
6
HOH
HOH
553
A
HOH
77
6
HOH
HOH
554
A
HOH
78
6
HOH
HOH
555
A
HOH
79
6
HOH
HOH
556
A
HOH
81
6
HOH
HOH
557
A
HOH
84
6
HOH
HOH
558
A
HOH
85
6
HOH
HOH
559
A
HOH
87
6
HOH
HOH
560
A
HOH
88
6
HOH
HOH
561
A
HOH
89
6
HOH
HOH
562
A
HOH
91
6
HOH
HOH
563
A
HOH
97
6
HOH
HOH
564
A
HOH
101
6
HOH
HOH
565
A
HOH
102
6
HOH
HOH
566
A
HOH
104
6
HOH
HOH
567
A
HOH
105
6
HOH
HOH
568
A
HOH
107
6
HOH
HOH
569
A
HOH
113
6
HOH
HOH
570
A
HOH
115
6
HOH
HOH
571
A
HOH
119
6
HOH
HOH
572
A
HOH
125
6
HOH
HOH
573
A
HOH
129
6
HOH
HOH
574
A
HOH
131
6
HOH
HOH
575
A
HOH
132
6
HOH
HOH
576
A
HOH
138
6
HOH
HOH
577
A
HOH
141
6
HOH
HOH
578
A
HOH
145
6
HOH
HOH
579
A
HOH
146
6
HOH
HOH
580
A
HOH
147
6
HOH
HOH
581
A
HOH
150
6
HOH
HOH
582
A
HOH
152
6
HOH
HOH
583
A
HOH
153
6
HOH
HOH
584
A
HOH
154
6
HOH
HOH
585
A
HOH
155
6
HOH
HOH
586
A
HOH
158
6
HOH
HOH
587
A
HOH
159
6
HOH
HOH
588
A
HOH
162
6
HOH
HOH
589
A
HOH
163
6
HOH
HOH
590
A
HOH
164
6
HOH
HOH
591
A
HOH
165
6
HOH
HOH
592
A
HOH
166
6
HOH
HOH
593
A
HOH
167
6
HOH
HOH
594
A
HOH
168
6
HOH
HOH
595
A
HOH
169
6
HOH
HOH
596
A
HOH
170
6
HOH
HOH
597
A
HOH
171
6
HOH
HOH
598
A
HOH
172
6
HOH
HOH
599
A
HOH
173
6
HOH
HOH
600
A
HOH
174
6
HOH
HOH
601
A
HOH
175
6
HOH
HOH
602
A
HOH
176
6
HOH
HOH
603
A
HOH
177
6
HOH
HOH
604
A
HOH
178
6
HOH
HOH
605
A
HOH
179
6
HOH
HOH
606
A
HOH
180
6
HOH
HOH
607
A
HOH
181
6
HOH
HOH
608
A
HOH
182
6
HOH
HOH
609
A
HOH
183
6
HOH
HOH
610
A
HOH
184
6
HOH
HOH
611
A
HOH
185
6
HOH
HOH
612
A
HOH
186
6
HOH
HOH
613
A
HOH
187
6
HOH
HOH
614
A
HOH
188
6
HOH
HOH
615
A
HOH
189
6
HOH
HOH
616
A
HOH
190
6
HOH
HOH
617
A
HOH
192
6
HOH
HOH
618
A
HOH
194
6
HOH
HOH
619
A
HOH
195
6
HOH
HOH
620
A
HOH
197
6
HOH
HOH
621
A
HOH
199
6
HOH
HOH
622
A
HOH
200
6
HOH
HOH
623
A
HOH
201
6
HOH
HOH
624
A
HOH
202
6
HOH
HOH
625
A
HOH
203
6
HOH
HOH
626
A
HOH
204
6
HOH
HOH
627
A
HOH
205
6
HOH
HOH
628
A
HOH
206
6
HOH
HOH
629
A
HOH
207
6
HOH
HOH
630
A
HOH
208
6
HOH
HOH
631
A
HOH
209
6
HOH
HOH
632
A
HOH
210
6
HOH
HOH
633
A
HOH
211
6
HOH
HOH
634
A
HOH
212
6
HOH
HOH
635
A
HOH
213
6
HOH
HOH
636
A
HOH
214
6
HOH
HOH
637
A
HOH
215
6
HOH
HOH
638
A
HOH
216
6
HOH
HOH
639
A
HOH
217
6
HOH
HOH
640
A
HOH
218
6
HOH
HOH
641
A
HOH
219
6
HOH
HOH
642
A
HOH
220
6
HOH
HOH
643
A
HOH
221
6
HOH
HOH
644
A
HOH
223
6
HOH
HOH
645
A
HOH
224
6
HOH
HOH
646
A
HOH
225
6
HOH
HOH
647
A
HOH
226
6
HOH
HOH
648
A
HOH
227
6
HOH
HOH
649
A
ASN
45
n
1
ASN
45
A
GLU
46
n
2
GLU
46
A
CYS
47
n
3
CYS
47
A
LEU
48
n
4
LEU
48
A
GLY
49
n
5
GLY
49
A
THR
50
n
6
THR
50
A
ILE
51
n
7
ILE
51
A
GLY
52
n
8
GLY
52
A
PRO
53
n
9
PRO
53
A
VAL
54
n
10
VAL
54
A
THR
55
n
11
THR
55
A
PRO
56
n
12
PRO
56
A
LEU
57
n
13
LEU
57
A
ASP
58
n
14
ASP
58
A
ALA
59
n
15
ALA
59
A
SER
60
n
16
SER
60
A
ASP
61
n
17
ASP
61
A
PHE
62
n
18
PHE
62
A
ALA
63
n
19
ALA
63
A
LEU
64
n
20
LEU
64
A
ASP
65
n
21
ASP
65
A
ILE
66
n
22
ILE
66
A
ARG
67
n
23
ARG
67
A
MET
68
n
24
MET
68
A
PRO
69
n
25
PRO
69
A
GLY
70
n
26
GLY
70
A
VAL
71
n
27
VAL
71
A
THR
72
n
28
THR
72
A
PRO
73
n
29
PRO
73
A
LYS
74
n
30
LYS
74
A
GLU
75
n
31
GLU
75
A
SER
76
n
32
SER
76
A
ASP
77
n
33
ASP
77
A
THR
78
n
34
THR
78
A
TYR
79
n
35
TYR
79
A
PHE
80
n
36
PHE
80
A
CYS
81
n
37
CYS
81
A
MET
82
n
38
MET
82
A
SER
83
n
39
SER
83
A
MET
84
n
40
MET
84
A
ARG
85
n
41
ARG
85
A
LEU
86
n
42
LEU
86
A
PRO
87
n
43
PRO
87
A
VAL
88
n
44
VAL
88
A
ASP
89
n
45
ASP
89
A
GLU
90
n
46
GLU
90
A
GLU
91
n
47
GLU
91
A
ALA
92
n
48
ALA
92
A
PHE
93
n
49
PHE
93
A
VAL
94
n
50
VAL
94
A
ILE
95
n
51
ILE
95
A
ASP
96
n
52
ASP
96
A
PHE
97
n
53
PHE
97
A
LYS
98
n
54
LYS
98
A
PRO
99
n
55
PRO
99
A
ARG
100
n
56
ARG
100
A
ALA
101
n
57
ALA
101
A
SER
102
n
58
SER
102
A
MET
103
n
59
MET
103
A
ASP
104
n
60
ASP
104
A
THR
105
n
61
THR
105
A
VAL
106
n
62
VAL
106
A
HIS
107
n
63
HIS
107
A
HIS
108
n
64
HIS
108
A
MET
109
n
65
MET
109
A
LEU
110
n
66
LEU
110
A
LEU
111
n
67
LEU
111
A
PHE
112
n
68
PHE
112
A
GLY
113
n
69
GLY
113
A
CYS
114
n
70
CYS
114
A
ASN
115
n
71
ASN
115
A
MET
116
n
72
MET
116
A
PRO
117
n
73
PRO
117
A
SER
118
n
74
SER
118
A
SER
119
n
75
SER
119
A
THR
120
n
76
THR
120
A
GLY
121
n
77
GLY
121
A
SER
122
n
78
SER
122
A
TYR
123
n
79
TYR
123
A
TRP
124
n
80
TRP
124
A
PHE
125
n
81
PHE
125
A
CYS
126
n
82
CYS
126
A
ASP
127
n
83
ASP
127
A
GLU
128
n
84
GLU
128
A
GLY
129
n
85
GLY
129
A
THR
130
n
86
THR
130
A
CYS
131
n
87
CYS
131
A
THR
132
n
88
THR
132
A
ASP
133
n
89
ASP
133
A
LYS
134
n
90
LYS
134
A
ALA
135
n
91
ALA
135
A
ASN
136
n
92
ASN
136
A
ILE
137
n
93
ILE
137
A
LEU
138
n
94
LEU
138
A
TYR
139
n
95
TYR
139
A
ALA
140
n
96
ALA
140
A
TRP
141
n
97
TRP
141
A
ALA
142
n
98
ALA
142
A
ARG
143
n
99
ARG
143
A
ASN
144
n
100
ASN
144
A
ALA
145
n
101
ALA
145
A
PRO
146
n
102
PRO
146
A
PRO
147
n
103
PRO
147
A
THR
148
n
104
THR
148
A
ARG
149
n
105
ARG
149
A
LEU
150
n
106
LEU
150
A
PRO
151
n
107
PRO
151
A
LYS
152
n
108
LYS
152
A
GLY
153
n
109
GLY
153
A
VAL
154
n
110
VAL
154
A
GLY
155
n
111
GLY
155
A
PHE
156
n
112
PHE
156
A
ARG
157
n
113
ARG
157
A
VAL
158
n
114
VAL
158
A
GLY
159
n
115
GLY
159
A
GLY
160
n
116
GLY
160
A
GLU
161
n
117
GLU
161
A
THR
162
n
118
THR
162
A
GLY
163
n
119
GLY
163
A
SER
164
n
120
SER
164
A
LYS
165
n
121
LYS
165
A
TYR
166
n
122
TYR
166
A
PHE
167
n
123
PHE
167
A
VAL
168
n
124
VAL
168
A
LEU
169
n
125
LEU
169
A
GLN
170
n
126
GLN
170
A
VAL
171
n
127
VAL
171
A
HIS
172
n
128
HIS
172
A
TYR
173
n
129
TYR
173
A
GLY
174
n
130
GLY
174
A
ASP
175
n
131
ASP
175
A
ILE
176
n
132
ILE
176
A
SER
177
n
133
SER
177
A
ALA
178
n
134
ALA
178
A
PHE
179
n
135
PHE
179
A
ARG
180
n
136
ARG
180
A
ASP
181
n
137
ASP
181
A
ASN
182
n
138
ASN
182
A
HIS
183
n
139
HIS
183
A
LYS
184
n
140
LYS
184
A
ASP
185
n
141
ASP
185
A
CYS
186
n
142
CYS
186
A
SER
187
n
143
SER
187
A
GLY
188
n
144
GLY
188
A
VAL
189
n
145
VAL
189
A
SER
190
n
146
SER
190
A
VAL
191
n
147
VAL
191
A
HIS
192
n
148
HIS
192
A
LEU
193
n
149
LEU
193
A
THR
194
n
150
THR
194
A
ARG
195
n
151
ARG
195
A
VAL
196
n
152
VAL
196
A
PRO
197
n
153
PRO
197
A
GLN
198
n
154
GLN
198
A
PRO
199
n
155
PRO
199
A
LEU
200
n
156
LEU
200
A
ILE
201
n
157
ILE
201
A
ALA
202
n
158
ALA
202
A
GLY
203
n
159
GLY
203
A
MET
204
n
160
MET
204
A
TYR
205
n
161
TYR
205
A
LEU
206
n
162
LEU
206
A
MET
207
n
163
MET
207
A
MET
208
n
164
MET
208
A
SER
209
n
165
SER
209
A
VAL
210
n
166
VAL
210
A
ASP
211
n
167
ASP
211
A
THR
212
n
168
THR
212
A
VAL
213
n
169
VAL
213
A
ILE
214
n
170
ILE
214
A
PRO
215
n
171
PRO
215
A
PRO
216
n
172
PRO
216
A
GLY
217
n
173
GLY
217
A
GLU
218
n
174
GLU
218
A
LYS
219
n
175
LYS
219
A
VAL
220
n
176
VAL
220
A
VAL
221
n
177
VAL
221
A
ASN
222
n
178
ASN
222
A
ALA
223
n
179
ALA
223
A
ASP
224
n
180
ASP
224
A
ILE
225
n
181
ILE
225
A
SER
226
n
182
SER
226
A
CYS
227
n
183
CYS
227
A
GLN
228
n
184
GLN
228
A
TYR
229
n
185
TYR
229
A
LYS
230
n
186
LYS
230
A
MET
231
n
187
MET
231
A
TYR
232
n
188
TYR
232
A
PRO
233
n
189
PRO
233
A
MET
234
n
190
MET
234
A
HIS
235
n
191
HIS
235
A
VAL
236
n
192
VAL
236
A
PHE
237
n
193
PHE
237
A
ALA
238
n
194
ALA
238
A
TYR
239
n
195
TYR
239
A
ARG
240
n
196
ARG
240
A
VAL
241
n
197
VAL
241
A
HIS
242
n
198
HIS
242
A
THR
243
n
199
THR
243
A
HIS
244
n
200
HIS
244
A
HIS
245
n
201
HIS
245
A
LEU
246
n
202
LEU
246
A
GLY
247
n
203
GLY
247
A
LYS
248
n
204
LYS
248
A
VAL
249
n
205
VAL
249
A
VAL
250
n
206
VAL
250
A
SER
251
n
207
SER
251
A
GLY
252
n
208
GLY
252
A
TYR
253
n
209
TYR
253
A
ARG
254
n
210
ARG
254
A
VAL
255
n
211
VAL
255
A
ARG
256
n
212
ARG
256
A
ASN
257
n
213
ASN
257
A
GLY
258
n
214
GLY
258
A
GLN
259
n
215
GLN
259
A
TRP
260
n
216
TRP
260
A
THR
261
n
217
THR
261
A
LEU
262
n
218
LEU
262
A
ILE
263
n
219
ILE
263
A
GLY
264
n
220
GLY
264
A
ARG
265
n
221
ARG
265
A
GLN
266
n
222
GLN
266
A
ASN
267
n
223
ASN
267
A
PRO
268
n
224
PRO
268
A
GLN
269
n
225
GLN
269
A
LEU
270
n
226
LEU
270
A
PRO
271
n
227
PRO
271
A
GLN
272
n
228
GLN
272
A
ALA
273
n
229
ALA
273
A
PHE
274
n
230
PHE
274
A
TYR
275
n
231
TYR
275
A
PRO
276
n
232
PRO
276
A
VAL
277
n
233
VAL
277
A
GLU
278
n
234
GLU
278
A
HIS
279
n
235
HIS
279
A
PRO
280
n
236
PRO
280
A
VAL
281
n
237
VAL
281
A
ASP
282
n
238
ASP
282
A
VAL
283
n
239
VAL
283
A
THR
284
n
240
THR
284
A
PHE
285
n
241
PHE
285
A
GLY
286
n
242
GLY
286
A
ASP
287
n
243
ASP
287
A
ILE
288
n
244
ILE
288
A
LEU
289
n
245
LEU
289
A
ALA
290
n
246
ALA
290
A
ALA
291
n
247
ALA
291
A
ARG
292
n
248
ARG
292
A
CYS
293
n
249
CYS
293
A
VAL
294
n
250
VAL
294
A
PHE
295
n
251
PHE
295
A
THR
296
n
252
THR
296
A
GLY
297
n
253
GLY
297
A
GLU
298
n
254
GLU
298
A
GLY
299
n
255
GLY
299
A
ARG
300
n
256
ARG
300
A
THR
301
n
257
THR
301
A
GLU
302
n
258
GLU
302
A
ALA
303
n
259
ALA
303
A
THR
304
n
260
THR
304
A
HIS
305
n
261
HIS
305
A
ILE
306
n
262
ILE
306
A
GLY
307
n
263
GLY
307
A
GLY
308
n
264
GLY
308
A
THR
309
n
265
THR
309
A
SER
310
n
266
SER
310
A
SER
311
n
267
SER
311
A
ASP
312
n
268
ASP
312
A
GLU
313
n
269
GLU
313
A
MET
314
n
270
MET
314
A
CYS
315
n
271
CYS
315
A
ASN
316
n
272
ASN
316
A
LEU
317
n
273
LEU
317
A
TYR
318
n
274
TYR
318
A
ILE
319
n
275
ILE
319
A
MET
320
n
276
MET
320
A
TYR
321
n
277
TYR
321
A
TYR
322
n
278
TYR
322
A
MET
323
n
279
MET
323
A
GLU
324
n
280
GLU
324
A
ALA
325
n
281
ALA
325
A
LYS
326
n
282
LYS
326
A
TYR
327
n
283
TYR
327
A
ALA
328
n
284
ALA
328
A
LEU
329
n
285
LEU
329
A
SER
330
n
286
SER
330
A
PHE
331
n
287
PHE
331
A
MET
332
n
288
MET
332
A
THR
333
n
289
THR
333
A
CYS
334
n
290
CYS
334
A
THR
335
n
291
THR
335
A
LYS
336
n
292
LYS
336
A
ASN
337
n
293
ASN
337
A
VAL
338
n
294
VAL
338
A
ALA
339
n
295
ALA
339
A
PRO
340
n
296
PRO
340
A
ASP
341
n
297
ASP
341
A
MET
342
n
298
MET
342
A
PHE
343
n
299
PHE
343
A
ARG
344
n
300
ARG
344
A
THR
345
n
301
THR
345
A
ILE
346
n
302
ILE
346
A
PRO
347
n
303
PRO
347
A
ALA
348
n
304
ALA
348
A
GLU
349
n
305
GLU
349
A
ALA
350
n
306
ALA
350
A
ASN
351
n
307
ASN
351
A
ILE
352
n
308
ILE
352
A
PRO
353
n
309
PRO
353
A
ILE
354
n
310
ILE
354
A
PRO
355
n
311
PRO
355
A
VAL
356
n
312
VAL
356
A
author_and_software_defined_assembly
PISA
1
monomeric
A
HOH
547
J
O
HOH
1_555
A
NI
403
D
NI
NI
1_555
A
HIS
235
A
NE2
HIS
191
1_555
93.7
A
HIS
107
A
ND1
HIS
63
1_555
A
CU
401
B
CU
CU
1_555
A
HIS
108
A
ND1
HIS
64
1_555
150.5
A
HIS
107
A
ND1
HIS
63
1_555
A
CU
401
B
CU
CU
1_555
A
HIS
172
A
ND1
HIS
128
1_555
104.3
A
HIS
108
A
ND1
HIS
64
1_555
A
CU
401
B
CU
CU
1_555
A
HIS
172
A
ND1
HIS
128
1_555
101.3
A
PEO
404
E
O2
PEO
1_555
A
CU
402
C
CU
CU
1_555
A
HIS
242
A
NE2
HIS
198
1_555
141.8
A
PEO
404
E
O2
PEO
1_555
A
CU
402
C
CU
CU
1_555
A
HIS
244
A
NE2
HIS
200
1_555
91.7
A
HIS
242
A
NE2
HIS
198
1_555
A
CU
402
C
CU
CU
1_555
A
HIS
244
A
NE2
HIS
200
1_555
108.7
A
PEO
404
E
O2
PEO
1_555
A
CU
402
C
CU
CU
1_555
A
PEO
404
E
O1
PEO
1_555
43.6
A
HIS
242
A
NE2
HIS
198
1_555
A
CU
402
C
CU
CU
1_555
A
PEO
404
E
O1
PEO
1_555
107.0
A
HIS
244
A
NE2
HIS
200
1_555
A
CU
402
C
CU
CU
1_555
A
PEO
404
E
O1
PEO
1_555
134.9
A
PEO
404
E
O2
PEO
1_555
A
CU
402
C
CU
CU
1_555
A
MET
314
A
SD
MET
270
1_555
96.4
A
HIS
242
A
NE2
HIS
198
1_555
A
CU
402
C
CU
CU
1_555
A
MET
314
A
SD
MET
270
1_555
104.5
A
HIS
244
A
NE2
HIS
200
1_555
A
CU
402
C
CU
CU
1_555
A
MET
314
A
SD
MET
270
1_555
112.6
A
PEO
404
E
O1
PEO
1_555
A
CU
402
C
CU
CU
1_555
A
MET
314
A
SD
MET
270
1_555
83.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
55
A
N
THR
11
A
O
ALA
63
A
O
ALA
19
A
N
LEU
64
A
N
LEU
20
A
O
VAL
191
A
O
VAL
147
A
O
SER
190
A
O
SER
146
A
N
LYS
98
A
N
LYS
54
A
N
ALA
92
A
N
ALA
48
A
O
VAL
158
A
O
VAL
114
A
N
GLY
155
A
N
GLY
111
A
O
LEU
200
A
O
LEU
156
A
N
TYR
205
A
N
TYR
161
A
O
ILE
319
A
O
ILE
275
A
O
TYR
318
A
O
TYR
274
A
N
ARG
240
A
N
ARG
196
A
N
TYR
239
A
N
TYR
195
A
O
TYR
275
A
O
TYR
231
A
N
THR
55
A
N
THR
11
A
O
ALA
63
A
O
ALA
19
A
N
LEU
64
A
N
LEU
20
A
O
VAL
191
A
O
VAL
147
A
O
SER
190
A
O
SER
146
A
N
LYS
98
A
N
LYS
54
A
N
ALA
92
A
N
ALA
48
A
O
VAL
158
A
O
VAL
114
A
N
GLY
155
A
N
GLY
111
A
O
LEU
200
A
O
LEU
156
A
N
LEU
206
A
N
LEU
162
A
O
MET
332
A
O
MET
288
A
O
TRP
124
A
O
TRP
80
A
N
CYS
81
A
N
CYS
37
A
N
PHE
80
A
N
PHE
36
A
O
VAL
171
A
O
VAL
127
A
O
GLN
170
A
O
GLN
126
A
N
LEU
110
A
N
LEU
66
A
N
GLY
113
A
N
GLY
69
A
O
ASN
136
A
O
ASN
92
A
N
ILE
214
A
N
ILE
170
A
O
THR
304
A
O
THR
260
A
N
VAL
221
A
N
VAL
177
A
O
PHE
295
A
O
PHE
251
A
O
ILE
288
A
O
ILE
244
A
N
VAL
255
A
N
VAL
211
A
N
ARG
254
A
N
ARG
210
A
O
THR
261
A
O
THR
217
1
A
A
O
O
HOH
HOH
518
554
2.16
1_555
4_556
1
A
A
O
O
HOH
HOH
562
586
2.19
1_555
3_646
1
A
ASP
58
-164.37
-157.97
1
A
ASP
127
-69.34
47.33
1
A
GLU
128
82.77
31.91
1
A
ILE
176
-94.66
31.36
1
A
ALA
178
64.57
-12.39
1
A
HIS
244
-95.42
-153.57
109.550
47.4079
23.420
0.8000
0.0000
-0.0000
-2.6400
0.0000
1.8400
0.9580
0.9430
U VALUES: REFINED INDIVIDUALLY
0.2442
0.2043
0.2063
1.9800
23.2200
1351
26633
5.1000
96.8300
1.000
1.000
4.2520
0.1190
RANDOM
1
THROUGHOUT
0.000
FOURIER SYNTHESIS
0.1740
0.1600
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
1.9800
23.2200
149
2611
29
0
2433
0.009
0.020
2537
1.216
1.958
3435
6.696
5.000
311
34.819
23.148
108
14.814
15.000
392
17.341
15.000
15
0.086
0.200
374
0.005
0.021
1932
0.3750
0.2770
2.0270
75
1591
1666
20
90.4000
1.970
25.000
4E4Z
26738
0.063
1.762
1
14.200
11.800
97.400
0.692
1.970
2.000
1291
1.453
1
9.400
95.100
0.621
2.000
2.040
1276
1.451
1
10.300
96.300
0.601
2.040
2.080
1313
1.515
1
11.000
96.800
0.530
2.080
2.120
1320
1.482
1
11.700
97.300
0.449
2.120
2.170
1309
1.515
1
12.000
98.300
0.382
2.170
2.220
1322
1.592
1
12.200
97.300
0.328
2.220
2.270
1336
1.617
1
12.300
97.700
0.294
2.270
2.340
1324
1.634
1
12.400
98.700
0.232
2.340
2.400
1329
1.631
1
12.400
98.700
0.201
2.400
2.480
1342
1.689
1
12.400
98.100
0.161
2.480
2.570
1324
1.759
1
12.400
98.300
0.136
2.570
2.670
1348
1.814
1
12.300
98.600
0.101
2.670
2.790
1356
1.882
1
12.300
98.800
0.077
2.790
2.940
1364
1.856
1
12.200
98.800
0.063
2.940
3.130
1355
1.896
1
12.200
98.400
0.050
3.130
3.370
1352
1.948
1
12.200
99.300
0.040
3.370
3.700
1382
1.848
1
12.100
98.700
0.036
3.700
4.240
1371
1.905
1
11.800
97.800
0.034
4.240
5.330
1355
2.008
1
11.500
95.600
0.040
5.330
25.000
1369
2.633
1
10.700
90.900
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.6.0117
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
CBASS
Peptidyl-glycine alpha-amidating monooxygenase (E.C.1.14.17.3)
Oxidized (Cu2+) peptidylglycine alpha-hydroxylating monooxygenase (PHM) in complex with hydrogen peroxide (1.98 A)
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
A
LEU
48
A
LEU
4
HELX_P
A
GLY
52
A
GLY
8
5
1
5
A
ALA
339
A
ALA
295
HELX_P
A
ILE
346
A
ILE
302
5
2
8
A
PRO
347
A
PRO
303
HELX_P
A
ASN
351
A
ASN
307
5
3
5
disulf
2.042
A
CYS
47
A
SG
CYS
3
1_555
A
CYS
186
A
SG
CYS
142
1_555
disulf
2.022
A
CYS
81
A
SG
CYS
37
1_555
A
CYS
126
A
SG
CYS
82
1_555
disulf
2.046
A
CYS
114
A
SG
CYS
70
1_555
A
CYS
131
A
SG
CYS
87
1_555
disulf
2.046
A
CYS
227
A
SG
CYS
183
1_555
A
CYS
334
A
SG
CYS
290
1_555
disulf
2.027
A
CYS
293
A
SG
CYS
249
1_555
A
CYS
315
A
SG
CYS
271
1_555
metalc
1.858
A
NI
403
D
NI
NI
1_555
A
HOH
547
J
O
HOH
1_555
metalc
1.927
A
HIS
107
A
ND1
HIS
63
1_555
A
CU
401
B
CU
CU
1_555
metalc
1.981
A
CU
402
C
CU
CU
1_555
A
PEO
404
E
O2
PEO
1_555
metalc
2.034
A
HIS
242
A
NE2
HIS
198
1_555
A
CU
402
C
CU
CU
1_555
metalc
2.048
A
HIS
108
A
ND1
HIS
64
1_555
A
CU
401
B
CU
CU
1_555
metalc
2.065
A
HIS
244
A
NE2
HIS
200
1_555
A
CU
402
C
CU
CU
1_555
metalc
2.089
A
CU
402
C
CU
CU
1_555
A
PEO
404
E
O1
PEO
1_555
metalc
2.116
A
HIS
235
A
NE2
HIS
191
1_555
A
NI
403
D
NI
NI
1_555
metalc
2.150
A
HIS
172
A
ND1
HIS
128
1_555
A
CU
401
B
CU
CU
1_555
metalc
2.400
A
MET
314
A
SD
MET
270
1_555
A
CU
402
C
CU
CU
1_555
OXIDOREDUCTASE
Catalysis, Mixed Function Oxygenases, Multienzyme Complexes, Stereoisomerism, OXIDOREDUCTASE
AMD_RAT
UNP
1
45
P14925
NECLGTIGPVTPLDASDFALDIRMPGVTPKESDTYFCMSMRLPVDEEAFVIDFKPRASMDTVHHMLLFGCNMPSSTGSYW
FCDEGTCTDKANILYAWARNAPPTRLPKGVGFRVGGETGSKYFVLQVHYGDISAFRDNHKDCSGVSVHLTRVPQPLIAGM
YLMMSVDTVIPPGEKVVNADISCQYKMYPMHVFAYRVHTHHLGKVVSGYRVRNGQWTLIGRQNPQLPQAFYPVEHPVDVT
FGDILAARCVFTGEGRTEATHIGGTSSDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAEANIPIPV
45
356
4E4Z
45
356
P14925
A
1
1
312
9
7
5
2
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
54
A
VAL
10
A
PRO
56
A
PRO
12
A
ASP
61
A
ASP
17
A
ARG
67
A
ARG
23
A
GLY
188
A
GLY
144
A
THR
194
A
THR
150
A
ALA
92
A
ALA
48
A
ARG
100
A
ARG
56
A
VAL
154
A
VAL
110
A
VAL
158
A
VAL
114
A
LEU
200
A
LEU
156
A
MET
208
A
MET
164
A
ASN
316
A
ASN
272
A
GLU
324
A
GLU
280
A
MET
234
A
MET
190
A
HIS
242
A
HIS
198
A
TYR
275
A
TYR
231
A
VAL
283
A
VAL
239
A
VAL
54
A
VAL
10
A
PRO
56
A
PRO
12
A
ASP
61
A
ASP
17
A
ARG
67
A
ARG
23
A
GLY
188
A
GLY
144
A
THR
194
A
THR
150
A
ALA
92
A
ALA
48
A
ARG
100
A
ARG
56
A
VAL
154
A
VAL
110
A
VAL
158
A
VAL
114
A
LEU
200
A
LEU
156
A
MET
208
A
MET
164
A
PHE
331
A
PHE
287
A
CYS
334
A
CYS
290
A
TRP
124
A
TRP
80
A
PHE
125
A
PHE
81
A
TYR
79
A
TYR
35
A
ARG
85
A
ARG
41
A
TYR
166
A
TYR
122
A
HIS
172
A
HIS
128
A
HIS
108
A
HIS
64
A
CYS
114
A
CYS
70
A
ASN
136
A
ASN
92
A
ALA
142
A
ALA
98
A
VAL
213
A
VAL
169
A
ILE
214
A
ILE
170
A
THR
304
A
THR
260
A
HIS
305
A
HIS
261
A
VAL
221
A
VAL
177
A
GLN
228
A
GLN
184
A
ILE
288
A
ILE
244
A
PHE
295
A
PHE
251
A
GLY
247
A
GLY
203
A
ARG
256
A
ARG
212
A
GLN
259
A
GLN
215
A
GLN
266
A
GLN
222
BINDING SITE FOR RESIDUE CU A 401
Software
3
BINDING SITE FOR RESIDUE CU A 402
Software
5
BINDING SITE FOR RESIDUE NI A 403
Software
3
BINDING SITE FOR RESIDUE PEO A 404
Software
6
BINDING SITE FOR RESIDUE GOL A 405
Software
7
BINDING SITE FOR RESIDUE GOL A 406
Software
7
BINDING SITE FOR RESIDUE GOL A 407
Software
7
BINDING SITE FOR RESIDUE GOL A 408
Software
8
A
HIS
107
A
HIS
63
3
1_555
A
HIS
108
A
HIS
64
3
1_555
A
HIS
172
A
HIS
128
3
1_555
A
HIS
242
A
HIS
198
5
1_555
A
HIS
244
A
HIS
200
5
1_555
A
MET
314
A
MET
270
5
1_555
A
PEO
404
E
PEO
5
1_555
A
HOH
539
J
HOH
5
1_555
A
HIS
235
A
HIS
191
3
1_555
A
HIS
305
A
HIS
261
3
4_456
A
HOH
547
J
HOH
3
1_555
A
GLU
128
A
GLU
84
6
1_555
A
HIS
242
A
HIS
198
6
1_555
A
HIS
244
A
HIS
200
6
1_555
A
MET
314
A
MET
270
6
1_555
A
CU
402
C
CU
6
1_555
A
HOH
539
J
HOH
6
1_555
A
LEU
138
A
LEU
94
7
1_555
A
TYR
139
A
TYR
95
7
1_555
A
THR
148
A
THR
104
7
1_555
A
MET
320
A
MET
276
7
1_555
A
HOH
546
J
HOH
7
1_555
A
HOH
559
J
HOH
7
1_555
A
HOH
567
J
HOH
7
1_555
A
TYR
205
A
TYR
161
7
1_555
A
GLN
228
A
GLN
184
7
1_555
A
TYR
229
A
TYR
185
7
1_555
A
LYS
230
A
LYS
186
7
1_555
A
MET
231
A
MET
187
7
1_555
A
THR
333
A
THR
289
7
1_555
A
HOH
644
J
HOH
7
1_555
A
VAL
255
A
VAL
211
7
1_555
A
ARG
256
A
ARG
212
7
1_555
A
ASN
257
A
ASN
213
7
1_555
A
GLY
258
A
GLY
214
7
1_555
A
GLY
286
A
GLY
242
7
1_555
A
ILE
288
A
ILE
244
7
1_555
A
HOH
621
J
HOH
7
1_555
A
GLY
113
A
GLY
69
8
1_555
A
ASN
136
A
ASN
92
8
1_555
A
LEU
138
A
LEU
94
8
1_555
A
ARG
157
A
ARG
113
8
1_555
A
GLY
163
A
GLY
119
8
1_555
A
SER
164
A
SER
120
8
1_555
A
HOH
589
J
HOH
8
1_555
A
HOH
590
J
HOH
8
1_555
19
P 21 21 21