0.006980
0.004030
0.000000
0.000000
0.008060
0.000000
0.000000
0.000000
0.010847
0.00000
0.00000
0.00000
Edwards, T.E.
Mosley, R.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
143.270
143.270
92.190
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O7 P
347.221
n
3'-deoxy-guanosine 5'-monophosphate
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
R
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
S
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
O
N
161
N
P
N
162
N
O
N
163
N
O
N
164
N
O
N
165
N
C
N
166
R
C
N
167
N
O
N
168
S
C
N
169
N
O
N
170
R
C
N
171
N
O
N
172
R
C
Y
173
N
N
Y
174
N
C
Y
175
N
N
Y
176
N
C
N
177
N
C
N
178
N
O
N
179
N
N
N
180
N
C
N
181
N
N
N
182
N
N
Y
183
N
C
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
Y
198
N
C
Y
199
N
C
N
200
N
C
N
201
N
N
Y
202
N
C
N
203
N
N
N
204
N
O
N
205
N
N
N
206
N
P
N
207
N
O
N
208
N
O
N
209
N
O
N
210
N
C
N
211
S
C
N
212
N
O
N
213
N
C
N
214
R
C
N
215
N
O
N
216
R
C
Y
217
N
N
Y
218
N
N
N
219
N
C
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
O
N
243
N
N
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
Y
289
N
C
Y
290
N
N
Y
291
N
C
Y
292
N
C
Y
293
N
N
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
S
C
N
313
N
C
N
314
N
C
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
C
N
360
N
N
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
S
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
N
N
438
S
C
N
439
N
C
N
440
N
O
N
441
N
C
N
442
N
O
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
N
N
452
S
C
N
453
N
C
N
454
N
O
N
455
R
C
N
456
N
O
N
457
N
C
N
458
N
O
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
N
N
469
S
C
N
470
N
C
N
471
N
O
N
472
N
C
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
N
Y
477
N
C
Y
478
N
C
Y
479
N
C
Y
480
N
C
Y
481
N
C
N
482
N
O
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
N
N
496
S
C
N
497
N
C
N
498
N
O
N
499
N
C
Y
500
N
C
Y
501
N
C
Y
502
N
C
Y
503
N
C
Y
504
N
C
Y
505
N
C
N
506
N
O
N
507
N
O
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
O
N
520
N
P
N
521
N
O
N
522
N
O
N
523
N
O
N
524
N
C
N
525
R
C
N
526
N
O
N
527
S
C
N
528
N
O
N
529
R
C
N
530
N
O
N
531
R
C
N
532
N
N
N
533
N
C
N
534
N
O
N
535
N
N
N
536
N
C
N
537
N
O
N
538
N
C
N
539
N
C
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
N
N
554
S
C
N
555
N
C
N
556
N
O
N
557
N
C
N
558
N
C
N
559
N
C
N
560
N
O
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
Y
182
N
sing
Y
183
N
sing
Y
184
N
doub
N
185
N
sing
Y
186
N
sing
N
187
N
sing
Y
188
N
doub
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
Y
210
N
sing
Y
211
N
sing
Y
212
N
doub
N
213
N
sing
N
214
N
doub
Y
215
N
doub
Y
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
Y
294
N
sing
Y
295
N
doub
Y
296
N
doub
N
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
Y
402
N
doub
Y
403
N
sing
Y
404
N
sing
N
405
N
sing
Y
406
N
doub
N
407
N
sing
Y
408
N
doub
N
409
N
sing
Y
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
doub
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
doub
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
doub
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
Y
471
N
doub
Y
472
N
sing
Y
473
N
sing
N
474
N
sing
Y
475
N
doub
Y
476
N
sing
Y
477
N
sing
N
478
N
sing
Y
479
N
sing
Y
480
N
doub
N
481
N
sing
Y
482
N
doub
N
483
N
sing
Y
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
doub
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
Y
499
N
doub
Y
500
N
sing
Y
501
N
sing
N
502
N
sing
Y
503
N
doub
N
504
N
sing
Y
505
N
doub
N
506
N
sing
Y
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
doub
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
doub
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
doub
N
543
N
sing
N
544
N
doub
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
doub
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
US
J.Virol.
JOVIAM
0825
0022-538X
86
6503
6511
10.1128/JVI.00386-12
22496223
Structure of hepatitis C virus polymerase in complex with primer-template RNA.
2012
10.2210/pdb4e78/pdb
pdb_00004e78
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100.0
1
CCD
2011-12-16
MARMOSAIC 300 mm CCD
Diamond(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97856
1.0
21-ID-G
APS
0.97856
0.97856
SYNCHROTRON
APS BEAMLINE 21-ID-G
1875.189
5'-R(*U*AP*CP*CP*GP*(GDO))-3'
2
syn
polymer
63736.203
PROTEIN (RNA-directed RNA polymerase)
2.7.7.48
SEE REMARK 999
E86Q, E87Q, Delta8 replaced with GG
1
man
polymer
18.015
water
37
nat
water
NS5B, p68
no
yes
UACCG(GDO)
UACCGX
T,P
polyribonucleotide
no
no
MSSMSYSWTGALITPCSPEEEKLPINPLSNSLLRYHNKVYCTTSKSASQRAKKVTFDRTQVLDAHYDSVLKDIKLAASKV
SARLLTLQQACQLTPPHSARSKYGFGAKEVRSLSGRAVNHIKSVWKDLLEDPQTPIPTTIMAKNEVFCVDPAKGGKKPAR
LIVYPDLGVRVCEKMALYDITQKLPQAVMGASYGFQYSPAQRVEYLLKAWAEKKDPMGFSYDTRCFDSTVTERDIRTEES
IYQACSLPEEARTAIHSLTERLYVGGPMFNSKGQTCGYRRCRASGVLTTSMGNTITCYVKALAACKAAGIVAPTMLVCGD
DLVVISESQGTEEDERNLRAFTEAMTRYSAPPGDPPRPEYDLELITSCSSNVSVALGPRGRRRYYLTRDPTTPLARAAWE
TVRHSPINSWLGNIIQYAPTIWVRMVLMTHFFSILMVQDTLDQNLGGVNPLDLPAIIERLHGLDAFSMHTYSHHELTRVA
SALRKLGAPPLRVWKSRARAVRASLISRGGKAAVCGRYLFNWAVKTKLKLTPLPEARLLDLSSWFTVGAGGGDIFHSVSR
ARPRLEHHHHHH
MSSMSYSWTGALITPCSPEEEKLPINPLSNSLLRYHNKVYCTTSKSASQRAKKVTFDRTQVLDAHYDSVLKDIKLAASKV
SARLLTLQQACQLTPPHSARSKYGFGAKEVRSLSGRAVNHIKSVWKDLLEDPQTPIPTTIMAKNEVFCVDPAKGGKKPAR
LIVYPDLGVRVCEKMALYDITQKLPQAVMGASYGFQYSPAQRVEYLLKAWAEKKDPMGFSYDTRCFDSTVTERDIRTEES
IYQACSLPEEARTAIHSLTERLYVGGPMFNSKGQTCGYRRCRASGVLTTSMGNTITCYVKALAACKAAGIVAPTMLVCGD
DLVVISESQGTEEDERNLRAFTEAMTRYSAPPGDPPRPEYDLELITSCSSNVSVALGPRGRRRYYLTRDPTTPLARAAWE
TVRHSPINSWLGNIIQYAPTIWVRMVLMTHFFSILMVQDTLDQNLGGVNPLDLPAIIERLHGLDAFSMHTYSHHELTRVA
SALRKLGAPPLRVWKSRARAVRASLISRGGKAAVCGRYLFNWAVKTKLKLTPLPEARLLDLSSWFTVGAGGGDIFHSVSR
ARPRLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
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n
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n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
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n
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n
n
n
n
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n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HCV
JFH-1
sample
3
445
NS5B
356411
Hepatitis C virus
469008
Escherichia coli
BL21(DE3)
plasmid
VCID 5854
HCV
JFH-1
sample
448
564
NS5B
356411
Hepatitis C virus
469008
Escherichia coli
BL21(DE3)
plasmid
VCID 5854
1
4.05
69.59
VAPOR DIFFUSION, SITTING DROP
6.0
4.37 mg/mL NS5B in 20 mM Tris, pH 8, 200 mM sodium chloride, 20% glycerol, 2 mM TCEP, 200 mM imidazole against 30% PEG3350, 0.1 M Bis-Tris propane, pH 6.0, 200 mM ammonium acetate soaked overnight in precipitant supplemented with 15% ethylene glycol as cryoprotectant and 0.2 mM UACCG(3'DG), crystal tracking ID 227386E9, VAPOR DIFFUSION, SITTING DROP, temperature 289K
289
7.264
1
19
T
4
P
5
-1.375
T_C4:G5_P
1
-7.723
-0.037
0.216
-0.001
-1.792
1
T
5
P
4
-9.763
T_G5:C4_P
2
-19.048
-0.454
-0.338
-0.094
2.576
32.687
T
T
4
5
20.623
P
P
5
4
3.399
11.369
-0.488
-1.720
TT_C4G5:C4G5_PP
1
2.067
-3.749
30.629
-4.916
1.205
entity_src_gen
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
repository
Initial release
Database references
Database references
Refinement description
Source and taxonomy
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-04-18
1
1
2012-04-25
1
2
2012-06-06
1
3
2017-07-26
1
4
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
NS5B apo structure
NS5B bound to primer-template with 2',3'-ddC
RCSB
Y
RCSB
2012-03-16
REL
REL
HOH
water
PROTEIN COMPRISES UNP RESIDUES 2443-3012 WITH RESIDUES 2886-2895 REPLACED WITH A GG LINKER.
4E76
PDB ENTRY 4E76
PDB
experimental model
HOH
1
3
HOH
HOH
601
A
HOH
2
3
HOH
HOH
602
A
HOH
3
3
HOH
HOH
603
A
HOH
4
3
HOH
HOH
604
A
HOH
5
3
HOH
HOH
605
A
HOH
6
3
HOH
HOH
606
A
HOH
7
3
HOH
HOH
607
A
HOH
8
3
HOH
HOH
608
A
HOH
9
3
HOH
HOH
609
A
HOH
10
3
HOH
HOH
610
A
HOH
11
3
HOH
HOH
611
A
HOH
12
3
HOH
HOH
612
A
HOH
13
3
HOH
HOH
613
A
HOH
14
3
HOH
HOH
614
A
HOH
15
3
HOH
HOH
615
A
HOH
16
3
HOH
HOH
616
A
HOH
17
3
HOH
HOH
617
A
HOH
18
3
HOH
HOH
618
A
HOH
19
3
HOH
HOH
619
A
HOH
20
3
HOH
HOH
620
A
HOH
21
3
HOH
HOH
621
A
HOH
22
3
HOH
HOH
622
A
HOH
23
3
HOH
HOH
623
A
HOH
24
3
HOH
HOH
624
A
HOH
25
3
HOH
HOH
625
A
HOH
26
3
HOH
HOH
626
A
HOH
27
3
HOH
HOH
627
A
HOH
28
3
HOH
HOH
628
A
HOH
29
3
HOH
HOH
629
A
HOH
30
3
HOH
HOH
630
A
HOH
31
3
HOH
HOH
631
A
HOH
32
3
HOH
HOH
632
A
HOH
33
3
HOH
HOH
633
A
HOH
34
3
HOH
HOH
634
A
HOH
35
3
HOH
HOH
635
A
HOH
36
3
HOH
HOH
636
A
HOH
37
3
HOH
HOH
637
A
n
1
1
T
A
2
n
2
A
2
T
C
3
n
3
C
3
T
C
4
n
4
C
4
T
G
5
n
5
G
5
T
G
6
n
6
GDO
6
T
n
1
1
P
A
2
n
2
A
2
P
C
3
n
3
C
3
P
C
4
n
4
C
4
P
G
5
n
5
G
5
P
G
6
n
6
GDO
6
P
n
1
-1
A
SER
0
n
2
SER
0
A
SER
1
n
3
SER
1
A
MET
2
n
4
MET
2
A
SER
3
n
5
SER
3
A
TYR
4
n
6
TYR
4
A
SER
5
n
7
SER
5
A
TRP
6
n
8
TRP
6
A
THR
7
n
9
THR
7
A
GLY
8
n
10
GLY
8
A
ALA
9
n
11
ALA
9
A
LEU
10
n
12
LEU
10
A
ILE
11
n
13
ILE
11
A
THR
12
n
14
THR
12
A
PRO
13
n
15
PRO
13
A
CYS
14
n
16
CYS
14
A
SER
15
n
17
SER
15
A
PRO
16
n
18
PRO
16
A
GLU
17
n
19
GLU
17
A
GLU
18
n
20
GLU
18
A
GLU
19
n
21
GLU
19
A
LYS
20
n
22
LYS
20
A
LEU
21
n
23
LEU
21
A
PRO
22
n
24
PRO
22
A
ILE
23
n
25
ILE
23
A
ASN
24
n
26
ASN
24
A
PRO
25
n
27
PRO
25
A
LEU
26
n
28
LEU
26
A
SER
27
n
29
SER
27
A
ASN
28
n
30
ASN
28
A
SER
29
n
31
SER
29
A
LEU
30
n
32
LEU
30
A
LEU
31
n
33
LEU
31
A
ARG
32
n
34
ARG
32
A
TYR
33
n
35
TYR
33
A
HIS
34
n
36
HIS
34
A
ASN
35
n
37
ASN
35
A
LYS
36
n
38
LYS
36
A
VAL
37
n
39
VAL
37
A
TYR
38
n
40
TYR
38
A
CYS
39
n
41
CYS
39
A
THR
40
n
42
THR
40
A
THR
41
n
43
THR
41
A
SER
42
n
44
SER
42
A
LYS
43
n
45
LYS
43
A
SER
44
n
46
SER
44
A
ALA
45
n
47
ALA
45
A
SER
46
n
48
SER
46
A
GLN
47
n
49
GLN
47
A
ARG
48
n
50
ARG
48
A
ALA
49
n
51
ALA
49
A
LYS
50
n
52
LYS
50
A
LYS
51
n
53
LYS
51
A
VAL
52
n
54
VAL
52
A
THR
53
n
55
THR
53
A
PHE
54
n
56
PHE
54
A
ASP
55
n
57
ASP
55
A
ARG
56
n
58
ARG
56
A
THR
57
n
59
THR
57
A
GLN
58
n
60
GLN
58
A
VAL
59
n
61
VAL
59
A
LEU
60
n
62
LEU
60
A
ASP
61
n
63
ASP
61
A
ALA
62
n
64
ALA
62
A
HIS
63
n
65
HIS
63
A
TYR
64
n
66
TYR
64
A
ASP
65
n
67
ASP
65
A
SER
66
n
68
SER
66
A
VAL
67
n
69
VAL
67
A
LEU
68
n
70
LEU
68
A
LYS
69
n
71
LYS
69
A
ASP
70
n
72
ASP
70
A
ILE
71
n
73
ILE
71
A
LYS
72
n
74
LYS
72
A
LEU
73
n
75
LEU
73
A
ALA
74
n
76
ALA
74
A
ALA
75
n
77
ALA
75
A
SER
76
n
78
SER
76
A
LYS
77
n
79
LYS
77
A
VAL
78
n
80
VAL
78
A
SER
79
n
81
SER
79
A
ALA
80
n
82
ALA
80
A
ARG
81
n
83
ARG
81
A
LEU
82
n
84
LEU
82
A
LEU
83
n
85
LEU
83
A
THR
84
n
86
THR
84
A
LEU
85
n
87
LEU
85
A
GLN
86
n
88
GLN
86
A
GLN
87
n
89
GLN
87
A
ALA
88
n
90
ALA
88
A
CYS
89
n
91
CYS
89
A
GLN
90
n
92
GLN
90
A
LEU
91
n
93
LEU
91
A
THR
92
n
94
THR
92
A
PRO
93
n
95
PRO
93
A
PRO
94
n
96
PRO
94
A
HIS
95
n
97
HIS
95
A
SER
96
n
98
SER
96
A
ALA
97
n
99
ALA
97
A
ARG
98
n
100
ARG
98
A
SER
99
n
101
SER
99
A
LYS
100
n
102
LYS
100
A
TYR
101
n
103
TYR
101
A
GLY
102
n
104
GLY
102
A
PHE
103
n
105
PHE
103
A
GLY
104
n
106
GLY
104
A
ALA
105
n
107
ALA
105
A
LYS
106
n
108
LYS
106
A
GLU
107
n
109
GLU
107
A
VAL
108
n
110
VAL
108
A
ARG
109
n
111
ARG
109
A
SER
110
n
112
SER
110
A
LEU
111
n
113
LEU
111
A
SER
112
n
114
SER
112
A
GLY
113
n
115
GLY
113
A
ARG
114
n
116
ARG
114
A
ALA
115
n
117
ALA
115
A
VAL
116
n
118
VAL
116
A
ASN
117
n
119
ASN
117
A
HIS
118
n
120
HIS
118
A
ILE
119
n
121
ILE
119
A
LYS
120
n
122
LYS
120
A
SER
121
n
123
SER
121
A
VAL
122
n
124
VAL
122
A
TRP
123
n
125
TRP
123
A
LYS
124
n
126
LYS
124
A
ASP
125
n
127
ASP
125
A
LEU
126
n
128
LEU
126
A
LEU
127
n
129
LEU
127
A
GLU
128
n
130
GLU
128
A
ASP
129
n
131
ASP
129
A
PRO
130
n
132
PRO
130
A
GLN
131
n
133
GLN
131
A
THR
132
n
134
THR
132
A
PRO
133
n
135
PRO
133
A
ILE
134
n
136
ILE
134
A
PRO
135
n
137
PRO
135
A
THR
136
n
138
THR
136
A
THR
137
n
139
THR
137
A
ILE
138
n
140
ILE
138
A
MET
139
n
141
MET
139
A
ALA
140
n
142
ALA
140
A
LYS
141
n
143
LYS
141
A
ASN
142
n
144
ASN
142
A
GLU
143
n
145
GLU
143
A
VAL
144
n
146
VAL
144
A
PHE
145
n
147
PHE
145
A
CYS
146
n
148
CYS
146
A
VAL
147
n
149
VAL
147
A
ASP
148
n
150
ASP
148
A
PRO
149
n
151
PRO
149
A
ALA
150
n
152
ALA
150
A
LYS
151
n
153
LYS
151
A
GLY
152
n
154
GLY
152
A
GLY
153
n
155
GLY
153
A
LYS
154
n
156
LYS
154
A
LYS
155
n
157
LYS
155
A
PRO
156
n
158
PRO
156
A
ALA
157
n
159
ALA
157
A
ARG
158
n
160
ARG
158
A
LEU
159
n
161
LEU
159
A
ILE
160
n
162
ILE
160
A
VAL
161
n
163
VAL
161
A
TYR
162
n
164
TYR
162
A
PRO
163
n
165
PRO
163
A
ASP
164
n
166
ASP
164
A
LEU
165
n
167
LEU
165
A
GLY
166
n
168
GLY
166
A
VAL
167
n
169
VAL
167
A
ARG
168
n
170
ARG
168
A
VAL
169
n
171
VAL
169
A
CYS
170
n
172
CYS
170
A
GLU
171
n
173
GLU
171
A
LYS
172
n
174
LYS
172
A
MET
173
n
175
MET
173
A
ALA
174
n
176
ALA
174
A
LEU
175
n
177
LEU
175
A
TYR
176
n
178
TYR
176
A
ASP
177
n
179
ASP
177
A
ILE
178
n
180
ILE
178
A
THR
179
n
181
THR
179
A
GLN
180
n
182
GLN
180
A
LYS
181
n
183
LYS
181
A
LEU
182
n
184
LEU
182
A
PRO
183
n
185
PRO
183
A
GLN
184
n
186
GLN
184
A
ALA
185
n
187
ALA
185
A
VAL
186
n
188
VAL
186
A
MET
187
n
189
MET
187
A
GLY
188
n
190
GLY
188
A
ALA
189
n
191
ALA
189
A
SER
190
n
192
SER
190
A
TYR
191
n
193
TYR
191
A
GLY
192
n
194
GLY
192
A
PHE
193
n
195
PHE
193
A
GLN
194
n
196
GLN
194
A
TYR
195
n
197
TYR
195
A
SER
196
n
198
SER
196
A
PRO
197
n
199
PRO
197
A
ALA
198
n
200
ALA
198
A
GLN
199
n
201
GLN
199
A
ARG
200
n
202
ARG
200
A
VAL
201
n
203
VAL
201
A
GLU
202
n
204
GLU
202
A
TYR
203
n
205
TYR
203
A
LEU
204
n
206
LEU
204
A
LEU
205
n
207
LEU
205
A
LYS
206
n
208
LYS
206
A
ALA
207
n
209
ALA
207
A
TRP
208
n
210
TRP
208
A
ALA
209
n
211
ALA
209
A
GLU
210
n
212
GLU
210
A
LYS
211
n
213
LYS
211
A
LYS
212
n
214
LYS
212
A
ASP
213
n
215
ASP
213
A
PRO
214
n
216
PRO
214
A
MET
215
n
217
MET
215
A
GLY
216
n
218
GLY
216
A
PHE
217
n
219
PHE
217
A
SER
218
n
220
SER
218
A
TYR
219
n
221
TYR
219
A
ASP
220
n
222
ASP
220
A
THR
221
n
223
THR
221
A
ARG
222
n
224
ARG
222
A
CYS
223
n
225
CYS
223
A
PHE
224
n
226
PHE
224
A
ASP
225
n
227
ASP
225
A
SER
226
n
228
SER
226
A
THR
227
n
229
THR
227
A
VAL
228
n
230
VAL
228
A
THR
229
n
231
THR
229
A
GLU
230
n
232
GLU
230
A
ARG
231
n
233
ARG
231
A
ASP
232
n
234
ASP
232
A
ILE
233
n
235
ILE
233
A
ARG
234
n
236
ARG
234
A
THR
235
n
237
THR
235
A
GLU
236
n
238
GLU
236
A
GLU
237
n
239
GLU
237
A
SER
238
n
240
SER
238
A
ILE
239
n
241
ILE
239
A
TYR
240
n
242
TYR
240
A
GLN
241
n
243
GLN
241
A
ALA
242
n
244
ALA
242
A
CYS
243
n
245
CYS
243
A
SER
244
n
246
SER
244
A
LEU
245
n
247
LEU
245
A
PRO
246
n
248
PRO
246
A
GLU
247
n
249
GLU
247
A
GLU
248
n
250
GLU
248
A
ALA
249
n
251
ALA
249
A
ARG
250
n
252
ARG
250
A
THR
251
n
253
THR
251
A
ALA
252
n
254
ALA
252
A
ILE
253
n
255
ILE
253
A
HIS
254
n
256
HIS
254
A
SER
255
n
257
SER
255
A
LEU
256
n
258
LEU
256
A
THR
257
n
259
THR
257
A
GLU
258
n
260
GLU
258
A
ARG
259
n
261
ARG
259
A
LEU
260
n
262
LEU
260
A
TYR
261
n
263
TYR
261
A
VAL
262
n
264
VAL
262
A
GLY
263
n
265
GLY
263
A
GLY
264
n
266
GLY
264
A
PRO
265
n
267
PRO
265
A
MET
266
n
268
MET
266
A
PHE
267
n
269
PHE
267
A
ASN
268
n
270
ASN
268
A
SER
269
n
271
SER
269
A
LYS
270
n
272
LYS
270
A
GLY
271
n
273
GLY
271
A
GLN
272
n
274
GLN
272
A
THR
273
n
275
THR
273
A
CYS
274
n
276
CYS
274
A
GLY
275
n
277
GLY
275
A
TYR
276
n
278
TYR
276
A
ARG
277
n
279
ARG
277
A
ARG
278
n
280
ARG
278
A
CYS
279
n
281
CYS
279
A
ARG
280
n
282
ARG
280
A
ALA
281
n
283
ALA
281
A
SER
282
n
284
SER
282
A
GLY
283
n
285
GLY
283
A
VAL
284
n
286
VAL
284
A
LEU
285
n
287
LEU
285
A
THR
286
n
288
THR
286
A
THR
287
n
289
THR
287
A
SER
288
n
290
SER
288
A
MET
289
n
291
MET
289
A
GLY
290
n
292
GLY
290
A
ASN
291
n
293
ASN
291
A
THR
292
n
294
THR
292
A
ILE
293
n
295
ILE
293
A
THR
294
n
296
THR
294
A
CYS
295
n
297
CYS
295
A
TYR
296
n
298
TYR
296
A
VAL
297
n
299
VAL
297
A
LYS
298
n
300
LYS
298
A
ALA
299
n
301
ALA
299
A
LEU
300
n
302
LEU
300
A
ALA
301
n
303
ALA
301
A
ALA
302
n
304
ALA
302
A
CYS
303
n
305
CYS
303
A
LYS
304
n
306
LYS
304
A
ALA
305
n
307
ALA
305
A
ALA
306
n
308
ALA
306
A
GLY
307
n
309
GLY
307
A
ILE
308
n
310
ILE
308
A
VAL
309
n
311
VAL
309
A
ALA
310
n
312
ALA
310
A
PRO
311
n
313
PRO
311
A
THR
312
n
314
THR
312
A
MET
313
n
315
MET
313
A
LEU
314
n
316
LEU
314
A
VAL
315
n
317
VAL
315
A
CYS
316
n
318
CYS
316
A
GLY
317
n
319
GLY
317
A
ASP
318
n
320
ASP
318
A
ASP
319
n
321
ASP
319
A
LEU
320
n
322
LEU
320
A
VAL
321
n
323
VAL
321
A
VAL
322
n
324
VAL
322
A
ILE
323
n
325
ILE
323
A
SER
324
n
326
SER
324
A
GLU
325
n
327
GLU
325
A
SER
326
n
328
SER
326
A
GLN
327
n
329
GLN
327
A
GLY
328
n
330
GLY
328
A
THR
329
n
331
THR
329
A
GLU
330
n
332
GLU
330
A
GLU
331
n
333
GLU
331
A
ASP
332
n
334
ASP
332
A
GLU
333
n
335
GLU
333
A
ARG
334
n
336
ARG
334
A
ASN
335
n
337
ASN
335
A
LEU
336
n
338
LEU
336
A
ARG
337
n
339
ARG
337
A
ALA
338
n
340
ALA
338
A
PHE
339
n
341
PHE
339
A
THR
340
n
342
THR
340
A
GLU
341
n
343
GLU
341
A
ALA
342
n
344
ALA
342
A
MET
343
n
345
MET
343
A
THR
344
n
346
THR
344
A
ARG
345
n
347
ARG
345
A
TYR
346
n
348
TYR
346
A
SER
347
n
349
SER
347
A
ALA
348
n
350
ALA
348
A
PRO
349
n
351
PRO
349
A
PRO
350
n
352
PRO
350
A
GLY
351
n
353
GLY
351
A
ASP
352
n
354
ASP
352
A
PRO
353
n
355
PRO
353
A
PRO
354
n
356
PRO
354
A
ARG
355
n
357
ARG
355
A
PRO
356
n
358
PRO
356
A
GLU
357
n
359
GLU
357
A
TYR
358
n
360
TYR
358
A
ASP
359
n
361
ASP
359
A
LEU
360
n
362
LEU
360
A
GLU
361
n
363
GLU
361
A
LEU
362
n
364
LEU
362
A
ILE
363
n
365
ILE
363
A
THR
364
n
366
THR
364
A
SER
365
n
367
SER
365
A
CYS
366
n
368
CYS
366
A
SER
367
n
369
SER
367
A
SER
368
n
370
SER
368
A
ASN
369
n
371
ASN
369
A
VAL
370
n
372
VAL
370
A
SER
371
n
373
SER
371
A
VAL
372
n
374
VAL
372
A
ALA
373
n
375
ALA
373
A
LEU
374
n
376
LEU
374
A
GLY
375
n
377
GLY
375
A
PRO
376
n
378
PRO
376
A
ARG
377
n
379
ARG
377
A
GLY
378
n
380
GLY
378
A
ARG
379
n
381
ARG
379
A
ARG
380
n
382
ARG
380
A
ARG
381
n
383
ARG
381
A
TYR
382
n
384
TYR
382
A
TYR
383
n
385
TYR
383
A
LEU
384
n
386
LEU
384
A
THR
385
n
387
THR
385
A
ARG
386
n
388
ARG
386
A
ASP
387
n
389
ASP
387
A
PRO
388
n
390
PRO
388
A
THR
389
n
391
THR
389
A
THR
390
n
392
THR
390
A
PRO
391
n
393
PRO
391
A
LEU
392
n
394
LEU
392
A
ALA
393
n
395
ALA
393
A
ARG
394
n
396
ARG
394
A
ALA
395
n
397
ALA
395
A
ALA
396
n
398
ALA
396
A
TRP
397
n
399
TRP
397
A
GLU
398
n
400
GLU
398
A
THR
399
n
401
THR
399
A
VAL
400
n
402
VAL
400
A
ARG
401
n
403
ARG
401
A
HIS
402
n
404
HIS
402
A
SER
403
n
405
SER
403
A
PRO
404
n
406
PRO
404
A
ILE
405
n
407
ILE
405
A
ASN
406
n
408
ASN
406
A
SER
407
n
409
SER
407
A
TRP
408
n
410
TRP
408
A
LEU
409
n
411
LEU
409
A
GLY
410
n
412
GLY
410
A
ASN
411
n
413
ASN
411
A
ILE
412
n
414
ILE
412
A
ILE
413
n
415
ILE
413
A
GLN
414
n
416
GLN
414
A
TYR
415
n
417
TYR
415
A
ALA
416
n
418
ALA
416
A
PRO
417
n
419
PRO
417
A
THR
418
n
420
THR
418
A
ILE
419
n
421
ILE
419
A
TRP
420
n
422
TRP
420
A
VAL
421
n
423
VAL
421
A
ARG
422
n
424
ARG
422
A
MET
423
n
425
MET
423
A
VAL
424
n
426
VAL
424
A
LEU
425
n
427
LEU
425
A
MET
426
n
428
MET
426
A
THR
427
n
429
THR
427
A
HIS
428
n
430
HIS
428
A
PHE
429
n
431
PHE
429
A
PHE
430
n
432
PHE
430
A
SER
431
n
433
SER
431
A
ILE
432
n
434
ILE
432
A
LEU
433
n
435
LEU
433
A
MET
434
n
436
MET
434
A
VAL
435
n
437
VAL
435
A
GLN
436
n
438
GLN
436
A
ASP
437
n
439
ASP
437
A
THR
438
n
440
THR
438
A
LEU
439
n
441
LEU
439
A
ASP
440
n
442
ASP
440
A
GLN
441
n
443
GLN
441
A
ASN
442
n
444
ASN
442
A
LEU
443
n
445
LEU
443
A
GLY
444
n
446
GLY
444
A
GLY
445
n
447
GLY
445
A
VAL
454
n
448
VAL
454
A
ASN
455
n
449
ASN
455
A
PRO
456
n
450
PRO
456
A
LEU
457
n
451
LEU
457
A
ASP
458
n
452
ASP
458
A
LEU
459
n
453
LEU
459
A
PRO
460
n
454
PRO
460
A
ALA
461
n
455
ALA
461
A
ILE
462
n
456
ILE
462
A
ILE
463
n
457
ILE
463
A
GLU
464
n
458
GLU
464
A
ARG
465
n
459
ARG
465
A
LEU
466
n
460
LEU
466
A
HIS
467
n
461
HIS
467
A
GLY
468
n
462
GLY
468
A
LEU
469
n
463
LEU
469
A
ASP
470
n
464
ASP
470
A
ALA
471
n
465
ALA
471
A
PHE
472
n
466
PHE
472
A
SER
473
n
467
SER
473
A
MET
474
n
468
MET
474
A
HIS
475
n
469
HIS
475
A
THR
476
n
470
THR
476
A
TYR
477
n
471
TYR
477
A
SER
478
n
472
SER
478
A
HIS
479
n
473
HIS
479
A
HIS
480
n
474
HIS
480
A
GLU
481
n
475
GLU
481
A
LEU
482
n
476
LEU
482
A
THR
483
n
477
THR
483
A
ARG
484
n
478
ARG
484
A
VAL
485
n
479
VAL
485
A
ALA
486
n
480
ALA
486
A
SER
487
n
481
SER
487
A
ALA
488
n
482
ALA
488
A
LEU
489
n
483
LEU
489
A
ARG
490
n
484
ARG
490
A
LYS
491
n
485
LYS
491
A
LEU
492
n
486
LEU
492
A
GLY
493
n
487
GLY
493
A
ALA
494
n
488
ALA
494
A
PRO
495
n
489
PRO
495
A
PRO
496
n
490
PRO
496
A
LEU
497
n
491
LEU
497
A
ARG
498
n
492
ARG
498
A
VAL
499
n
493
VAL
499
A
TRP
500
n
494
TRP
500
A
LYS
501
n
495
LYS
501
A
SER
502
n
496
SER
502
A
ARG
503
n
497
ARG
503
A
ALA
504
n
498
ALA
504
A
ARG
505
n
499
ARG
505
A
ALA
506
n
500
ALA
506
A
VAL
507
n
501
VAL
507
A
ARG
508
n
502
ARG
508
A
ALA
509
n
503
ALA
509
A
SER
510
n
504
SER
510
A
LEU
511
n
505
LEU
511
A
ILE
512
n
506
ILE
512
A
SER
513
n
507
SER
513
A
ARG
514
n
508
ARG
514
A
GLY
515
n
509
GLY
515
A
GLY
516
n
510
GLY
516
A
LYS
517
n
511
LYS
517
A
ALA
518
n
512
ALA
518
A
ALA
519
n
513
ALA
519
A
VAL
520
n
514
VAL
520
A
CYS
521
n
515
CYS
521
A
GLY
522
n
516
GLY
522
A
ARG
523
n
517
ARG
523
A
TYR
524
n
518
TYR
524
A
LEU
525
n
519
LEU
525
A
PHE
526
n
520
PHE
526
A
ASN
527
n
521
ASN
527
A
TRP
528
n
522
TRP
528
A
ALA
529
n
523
ALA
529
A
VAL
530
n
524
VAL
530
A
LYS
531
n
525
LYS
531
A
THR
532
n
526
THR
532
A
LYS
533
n
527
LYS
533
A
LEU
534
n
528
LEU
534
A
LYS
535
n
529
LYS
535
A
LEU
536
n
530
LEU
536
A
THR
537
n
531
THR
537
A
PRO
538
n
532
PRO
538
A
LEU
539
n
533
LEU
539
A
PRO
540
n
534
PRO
540
A
GLU
541
n
535
GLU
541
A
ALA
542
n
536
ALA
542
A
ARG
543
n
537
ARG
543
A
LEU
544
n
538
LEU
544
A
LEU
545
n
539
LEU
545
A
n
540
546
A
n
541
547
A
n
542
548
A
n
543
549
A
n
544
550
A
n
545
551
A
n
546
552
A
n
547
553
A
n
548
554
A
n
549
555
A
n
550
556
A
n
551
557
A
n
552
558
A
n
553
559
A
n
554
560
A
n
555
561
A
n
556
562
A
n
557
563
A
n
558
564
A
n
559
565
A
n
560
566
A
n
561
567
A
n
562
568
A
n
563
569
A
n
564
570
A
n
565
571
A
n
566
572
A
n
567
573
A
n
568
574
A
n
569
575
A
n
570
576
A
n
571
577
A
n
572
578
A
author_and_software_defined_assembly
PISA
3
trimeric
2620
-17
22740
T
GDO
6
3'-DEOXY-GUANOSINE 5'-MONOPHOSPHATE
A
GDO
6
G
P
GDO
6
3'-DEOXY-GUANOSINE 5'-MONOPHOSPHATE
B
GDO
6
G
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
5
C
N
SER
7
A
O
TYR
276
C
O
TYR
278
A
O
CYS
274
C
O
CYS
276
A
N
MET
266
C
N
MET
268
A
O
PHE
267
C
O
PHE
269
A
N
ILE
138
C
N
ILE
140
A
N
MET
139
C
N
MET
141
A
O
ILE
160
C
O
ILE
162
A
N
TYR
38
C
N
TYR
40
A
O
PHE
145
C
O
PHE
147
A
N
MET
215
C
N
MET
217
A
O
SER
324
C
O
SER
326
A
O
ILE
323
C
O
ILE
325
A
N
THR
312
C
N
THR
314
A
N
ALA
373
C
N
ALA
375
A
O
ARG
381
C
O
ARG
383
1
T
P
A
2
A
P
A
2
1
Y
1
T
OP1
A
2
A
OP1
A
2
1
Y
1
T
OP2
A
2
A
OP2
A
2
1
Y
1
T
N9
A
2
A
N9
A
2
1
Y
1
T
C8
A
2
A
C8
A
2
1
Y
1
T
N7
A
2
A
N7
A
2
1
Y
1
T
C5
A
2
A
C5
A
2
1
Y
1
T
C6
A
2
A
C6
A
2
1
Y
1
T
N6
A
2
A
N6
A
2
1
Y
1
T
N1
A
2
A
N1
A
2
1
Y
1
T
C2
A
2
A
C2
A
2
1
Y
1
T
N3
A
2
A
N3
A
2
1
Y
1
T
C4
A
2
A
C4
A
2
1
Y
1
A
CG
LEU
10
C
CG
LEU
12
1
Y
1
A
CD1
LEU
10
C
CD1
LEU
12
1
Y
1
A
CD2
LEU
10
C
CD2
LEU
12
1
Y
1
A
CG
GLU
19
C
CG
GLU
21
1
Y
1
A
CD
GLU
19
C
CD
GLU
21
1
Y
1
A
OE1
GLU
19
C
OE1
GLU
21
1
Y
1
A
OE2
GLU
19
C
OE2
GLU
21
1
Y
1
A
CG
LYS
43
C
CG
LYS
45
1
Y
1
A
CD
LYS
43
C
CD
LYS
45
1
Y
1
A
CE
LYS
43
C
CE
LYS
45
1
Y
1
A
NZ
LYS
43
C
NZ
LYS
45
1
Y
1
A
CG
LYS
50
C
CG
LYS
52
1
Y
1
A
CD
LYS
50
C
CD
LYS
52
1
Y
1
A
CE
LYS
50
C
CE
LYS
52
1
Y
1
A
NZ
LYS
50
C
NZ
LYS
52
1
Y
1
A
CG
LYS
51
C
CG
LYS
53
1
Y
1
A
CD
LYS
51
C
CD
LYS
53
1
Y
1
A
CE
LYS
51
C
CE
LYS
53
1
Y
1
A
NZ
LYS
51
C
NZ
LYS
53
1
Y
1
A
CG
LYS
69
C
CG
LYS
71
1
Y
1
A
CD
LYS
69
C
CD
LYS
71
1
Y
1
A
CE
LYS
69
C
CE
LYS
71
1
Y
1
A
NZ
LYS
69
C
NZ
LYS
71
1
Y
1
A
CG
LYS
100
C
CG
LYS
102
1
Y
1
A
CD
LYS
100
C
CD
LYS
102
1
Y
1
A
CE
LYS
100
C
CE
LYS
102
1
Y
1
A
NZ
LYS
100
C
NZ
LYS
102
1
Y
1
A
CG
LYS
106
C
CG
LYS
108
1
Y
1
A
CD
LYS
106
C
CD
LYS
108
1
Y
1
A
CE
LYS
106
C
CE
LYS
108
1
Y
1
A
NZ
LYS
106
C
NZ
LYS
108
1
Y
1
A
CG
ARG
114
C
CG
ARG
116
1
Y
1
A
CD
ARG
114
C
CD
ARG
116
1
Y
1
A
NE
ARG
114
C
NE
ARG
116
1
Y
1
A
CZ
ARG
114
C
CZ
ARG
116
1
Y
1
A
NH1
ARG
114
C
NH1
ARG
116
1
Y
1
A
NH2
ARG
114
C
NH2
ARG
116
1
Y
1
A
CG
GLN
131
C
CG
GLN
133
1
Y
1
A
CD
GLN
131
C
CD
GLN
133
1
Y
1
A
OE1
GLN
131
C
OE1
GLN
133
1
Y
1
A
NE2
GLN
131
C
NE2
GLN
133
1
Y
1
A
CG
LYS
141
C
CG
LYS
143
1
Y
1
A
CD
LYS
141
C
CD
LYS
143
1
Y
1
A
CE
LYS
141
C
CE
LYS
143
1
Y
1
A
NZ
LYS
141
C
NZ
LYS
143
1
Y
1
A
CG
GLU
143
C
CG
GLU
145
1
Y
1
A
CD
GLU
143
C
CD
GLU
145
1
Y
1
A
OE1
GLU
143
C
OE1
GLU
145
1
Y
1
A
OE2
GLU
143
C
OE2
GLU
145
1
Y
1
A
CG
LYS
151
C
CG
LYS
153
1
Y
1
A
CD
LYS
151
C
CD
LYS
153
1
Y
1
A
CE
LYS
151
C
CE
LYS
153
1
Y
1
A
NZ
LYS
151
C
NZ
LYS
153
1
Y
1
A
CG
GLN
184
C
CG
GLN
186
1
Y
1
A
CD
GLN
184
C
CD
GLN
186
1
Y
1
A
OE1
GLN
184
C
OE1
GLN
186
1
Y
1
A
NE2
GLN
184
C
NE2
GLN
186
1
Y
1
A
CG
LYS
206
C
CG
LYS
208
1
Y
1
A
CD
LYS
206
C
CD
LYS
208
1
Y
1
A
CE
LYS
206
C
CE
LYS
208
1
Y
1
A
NZ
LYS
206
C
NZ
LYS
208
1
Y
1
A
CG
LYS
212
C
CG
LYS
214
1
Y
1
A
CD
LYS
212
C
CD
LYS
214
1
Y
1
A
CE
LYS
212
C
CE
LYS
214
1
Y
1
A
NZ
LYS
212
C
NZ
LYS
214
1
Y
1
A
OG1
THR
221
C
OG1
THR
223
1
Y
1
A
CG2
THR
221
C
CG2
THR
223
1
Y
1
A
CG
ARG
222
C
CG
ARG
224
1
Y
1
A
CD
ARG
222
C
CD
ARG
224
1
Y
1
A
NE
ARG
222
C
NE
ARG
224
1
Y
1
A
CZ
ARG
222
C
CZ
ARG
224
1
Y
1
A
NH1
ARG
222
C
NH1
ARG
224
1
Y
1
A
NH2
ARG
222
C
NH2
ARG
224
1
Y
1
A
CG
LYS
270
C
CG
LYS
272
1
Y
1
A
CD
LYS
270
C
CD
LYS
272
1
Y
1
A
CE
LYS
270
C
CE
LYS
272
1
Y
1
A
NZ
LYS
270
C
NZ
LYS
272
1
Y
1
A
CG
GLU
330
C
CG
GLU
332
1
Y
1
A
CD
GLU
330
C
CD
GLU
332
1
Y
1
A
OE1
GLU
330
C
OE1
GLU
332
1
Y
1
A
OE2
GLU
330
C
OE2
GLU
332
1
Y
1
A
CG
GLU
333
C
CG
GLU
335
1
Y
1
A
CD
GLU
333
C
CD
GLU
335
1
Y
1
A
OE1
GLU
333
C
OE1
GLU
335
1
Y
1
A
OE2
GLU
333
C
OE2
GLU
335
1
Y
1
A
CG
ARG
377
C
CG
ARG
379
1
Y
1
A
CD
ARG
377
C
CD
ARG
379
1
Y
1
A
NE
ARG
377
C
NE
ARG
379
1
Y
1
A
CZ
ARG
377
C
CZ
ARG
379
1
Y
1
A
NH1
ARG
377
C
NH1
ARG
379
1
Y
1
A
NH2
ARG
377
C
NH2
ARG
379
1
Y
1
A
CG
ARG
379
C
CG
ARG
381
1
Y
1
A
CD
ARG
379
C
CD
ARG
381
1
Y
1
A
NE
ARG
379
C
NE
ARG
381
1
Y
1
A
CZ
ARG
379
C
CZ
ARG
381
1
Y
1
A
NH1
ARG
379
C
NH1
ARG
381
1
Y
1
A
NH2
ARG
379
C
NH2
ARG
381
1
Y
1
A
CG
ARG
381
C
CG
ARG
383
1
Y
1
A
CD
ARG
381
C
CD
ARG
383
1
Y
1
A
NE
ARG
381
C
NE
ARG
383
1
Y
1
A
CZ
ARG
381
C
CZ
ARG
383
1
Y
1
A
NH1
ARG
381
C
NH1
ARG
383
1
Y
1
A
NH2
ARG
381
C
NH2
ARG
383
1
Y
1
A
CG
ARG
401
C
CG
ARG
403
1
Y
1
A
CD
ARG
401
C
CD
ARG
403
1
Y
1
A
NE
ARG
401
C
NE
ARG
403
1
Y
1
A
CZ
ARG
401
C
CZ
ARG
403
1
Y
1
A
NH1
ARG
401
C
NH1
ARG
403
1
Y
1
A
NH2
ARG
401
C
NH2
ARG
403
1
Y
1
A
CG
GLN
441
C
CG
GLN
443
1
Y
1
A
CD
GLN
441
C
CD
GLN
443
1
Y
1
A
OE1
GLN
441
C
OE1
GLN
443
1
Y
1
A
NE2
GLN
441
C
NE2
GLN
443
1
Y
1
A
CG
ARG
465
C
CG
ARG
459
1
Y
1
A
CD
ARG
465
C
CD
ARG
459
1
Y
1
A
NE
ARG
465
C
NE
ARG
459
1
Y
1
A
CZ
ARG
465
C
CZ
ARG
459
1
Y
1
A
NH1
ARG
465
C
NH1
ARG
459
1
Y
1
A
NH2
ARG
465
C
NH2
ARG
459
1
Y
1
A
CG
LYS
531
C
CG
LYS
525
1
Y
1
A
CD
LYS
531
C
CD
LYS
525
1
Y
1
A
CE
LYS
531
C
CE
LYS
525
1
Y
1
A
NZ
LYS
531
C
NZ
LYS
525
1
Y
1
A
OG1
THR
532
C
OG1
THR
526
1
Y
1
A
CG2
THR
532
C
CG2
THR
526
1
Y
1
A
CG
LYS
535
C
CG
LYS
529
1
Y
1
A
CD
LYS
535
C
CD
LYS
529
1
Y
1
A
CE
LYS
535
C
CE
LYS
529
1
Y
1
A
NZ
LYS
535
C
NZ
LYS
529
1
Y
1
A
CG
GLU
541
C
CG
GLU
535
1
Y
1
A
CD
GLU
541
C
CD
GLU
535
1
Y
1
A
OE1
GLU
541
C
OE1
GLU
535
1
Y
1
A
OE2
GLU
541
C
OE2
GLU
535
1
Y
1
A
CG
ARG
543
C
CG
ARG
537
1
Y
1
A
CD
ARG
543
C
CD
ARG
537
1
Y
1
A
NE
ARG
543
C
NE
ARG
537
1
Y
1
A
CZ
ARG
543
C
CZ
ARG
537
1
Y
1
A
NH1
ARG
543
C
NH1
ARG
537
1
Y
1
A
NH2
ARG
543
C
NH2
ARG
537
1
Y
1
A
CG
LEU
544
C
CG
LEU
538
1
Y
1
A
CD1
LEU
544
C
CD1
LEU
538
1
Y
1
A
CD2
LEU
544
C
CD2
LEU
538
1
Y
1
A
CG
LEU
545
C
CG
LEU
539
1
Y
1
A
CD1
LEU
545
C
CD1
LEU
539
1
Y
1
A
CD2
LEU
545
C
CD2
LEU
539
1
Y
1
T
U
1
A
U
1
1
Y
1
P
U
1
B
U
1
1
Y
1
A
MET
-1
C
MET
1
1
Y
1
A
ASP
546
C
ASP
540
1
Y
1
A
LEU
547
C
LEU
541
1
Y
1
A
SER
548
C
SER
542
1
Y
1
A
SER
549
C
SER
543
1
Y
1
A
TRP
550
C
TRP
544
1
Y
1
A
PHE
551
C
PHE
545
1
Y
1
A
THR
552
C
THR
546
1
Y
1
A
VAL
553
C
VAL
547
1
Y
1
A
GLY
554
C
GLY
548
1
Y
1
A
ALA
555
C
ALA
549
1
Y
1
A
GLY
556
C
GLY
550
1
Y
1
A
GLY
557
C
GLY
551
1
Y
1
A
GLY
558
C
GLY
552
1
Y
1
A
ASP
559
C
ASP
553
1
Y
1
A
ILE
560
C
ILE
554
1
Y
1
A
PHE
561
C
PHE
555
1
Y
1
A
HIS
562
C
HIS
556
1
Y
1
A
SER
563
C
SER
557
1
Y
1
A
VAL
564
C
VAL
558
1
Y
1
A
SER
565
C
SER
559
1
Y
1
A
ARG
566
C
ARG
560
1
Y
1
A
ALA
567
C
ALA
561
1
Y
1
A
ARG
568
C
ARG
562
1
Y
1
A
PRO
569
C
PRO
563
1
Y
1
A
ARG
570
C
ARG
564
1
Y
1
A
LEU
571
C
LEU
565
1
Y
1
A
GLU
572
C
GLU
566
1
Y
1
A
HIS
573
C
HIS
567
1
Y
1
A
HIS
574
C
HIS
568
1
Y
1
A
HIS
575
C
HIS
569
1
Y
1
A
HIS
576
C
HIS
570
1
Y
1
A
HIS
577
C
HIS
571
1
Y
1
A
HIS
578
C
HIS
572
1
Y
1
6.91
0.90
109.80
116.71
T
T
T
C5'
C4'
O4'
A
A
A
2
2
2
N
1
7.42
1.20
119.70
127.12
P
P
P
C3'
O3'
P
A
A
C
2
2
3
Y
1
6.69
1.10
114.20
120.89
A
A
A
CA
CB
SG
CYS
CYS
CYS
316
316
316
N
1
A
CYS
14
-81.36
-84.04
1
A
PRO
16
-38.49
125.87
1
A
PHE
54
179.75
159.75
1
A
LEU
85
-39.25
-38.67
1
A
TYR
101
-98.61
48.60
1
A
SER
112
-38.43
142.93
1
A
ASP
129
-170.45
111.69
1
A
LYS
151
-108.42
44.41
1
A
GLN
184
-49.30
-16.83
1
A
GLN
194
-58.88
7.90
1
A
ASP
213
-151.42
79.09
1
A
ARG
222
-65.60
3.04
1
A
ALA
242
-61.83
1.70
1
A
LEU
260
-125.62
-61.04
1
A
CYS
316
-101.34
62.29
1
A
ASP
437
32.31
45.96
1
A
HIS
475
-147.72
-27.86
130.530
55.1667
24.770
2.7500
1.3700
0.0000
2.7500
0.0000
-4.1200
0.9460
0.9160
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
U VALUES : REFINED INDIVIDUALLY
0.2420
0.1980
0.2000
2.900
50.0
1217
23671
5.1
98.54
0.2018
0.1640
1.000
1.000
0.7916
14.3460
0.2550
0.7485
0.3682
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.5280
0.3130
0.8000
0.8000
1.2000
PDB ENTRY 4E76
MAXIMUM LIKELIHOOD
MASK
2.900
50.0
37
4289
0
201
4051
0.009
0.019
4369
0.001
0.020
2858
1.336
1.936
6003
1.089
3.001
6953
5.918
5.000
537
35.918
22.500
156
16.867
15.000
639
14.558
15.000
32
0.078
0.200
691
0.007
0.021
4756
0.001
0.020
903
0.4210
0.3640
2.980
91
1585
1676
20
97.56
59.642
2.900
50
4E78
24020
23671
-3.0
0.092
1
22.040
5.9
98.5
0.863
2.900
2.980
2.810
10593
1738
1
97.7
0.733
2.980
3.060
3.260
10261
1677
1
97.6
0.545
3.060
3.150
4.350
10008
1637
1
98.2
0.409
3.150
3.240
5.600
9803
1616
1
99.1
0.312
3.240
3.350
6.980
9399
1558
1
98.5
0.242
3.350
3.470
9.040
8822
1477
1
98.3
0.180
3.470
3.600
11.850
8855
1475
1
98.9
0.134
3.600
3.740
15.170
8264
1386
1
98.7
0.103
3.740
3.910
19.290
8011
1349
1
98.8
0.079
3.910
4.100
23.880
7641
1302
1
99.5
0.059
4.100
4.320
30.360
7220
1236
1
99.4
0.053
4.320
4.590
33.020
6802
1166
1
99.0
0.048
4.590
4.900
36.380
6300
1081
1
98.6
0.045
4.900
5.290
38.560
6022
1029
1
99.1
0.047
5.290
5.800
35.910
5355
926
1
98.5
0.045
5.800
6.480
37.880
4937
858
1
98.7
0.032
6.480
7.490
49.500
4220
755
1
99.3
0.020
7.490
9.170
75.180
3517
637
1
98.5
0.015
9.170
12.970
94.210
2709
508
1
98.8
0.014
12.970
82.790
1093
260
1
90.9
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data reduction
XDS
phasing
PHASER
Crystal structure of a product state assembly of HCV NS5B genotype 2a JFH-1 isolate with beta hairpin loop deletion bound to primer-template RNA with 3'-dG
1
N
N
1
N
N
2
N
N
3
N
N
A
TYR
33
C
TYR
35
HELX_P
A
ASN
35
C
ASN
37
5
1
3
A
THR
41
C
THR
43
HELX_P
A
LYS
43
C
LYS
45
5
2
3
A
SER
44
C
SER
46
HELX_P
A
THR
53
C
THR
55
1
3
10
A
ASP
61
C
ASP
63
HELX_P
A
SER
76
C
SER
78
1
4
16
A
THR
84
C
THR
86
HELX_P
A
LEU
91
C
LEU
93
1
5
8
A
GLY
104
C
GLY
106
HELX_P
A
SER
110
C
SER
112
1
6
7
A
SER
112
C
SER
114
HELX_P
A
GLU
128
C
GLU
130
1
7
17
A
ASP
164
C
ASP
166
HELX_P
A
LEU
182
C
LEU
184
1
8
19
A
LEU
182
C
LEU
184
HELX_P
A
MET
187
C
MET
189
1
9
6
A
GLY
188
C
GLY
190
HELX_P
A
TYR
191
C
TYR
193
5
10
4
A
SER
196
C
SER
198
HELX_P
A
GLU
210
C
GLU
212
1
11
15
A
THR
229
C
THR
231
HELX_P
A
ALA
242
C
ALA
244
1
12
14
A
PRO
246
C
PRO
248
HELX_P
A
LEU
260
C
LEU
262
1
13
15
A
THR
286
C
THR
288
HELX_P
A
GLY
307
C
GLY
309
1
14
22
A
GLN
327
C
GLN
329
HELX_P
A
TYR
346
C
TYR
348
1
15
20
A
ASP
359
C
ASP
361
HELX_P
A
ILE
363
C
ILE
365
5
16
5
A
PRO
388
C
PRO
390
HELX_P
A
ALA
396
C
ALA
398
1
17
9
A
PRO
404
C
PRO
406
HELX_P
A
TYR
415
C
TYR
417
1
18
12
A
THR
418
C
THR
420
HELX_P
A
VAL
424
C
VAL
426
1
19
7
A
VAL
424
C
VAL
426
HELX_P
A
GLN
436
C
GLN
438
1
20
13
A
ASN
442
C
ASN
444
HELX_P
A
VAL
454
C
VAL
448
5
21
5
A
ASN
455
C
ASN
449
HELX_P
A
LEU
457
C
LEU
451
5
22
3
A
ASP
458
C
ASP
452
HELX_P
A
GLY
468
C
GLY
462
1
23
11
A
LEU
469
C
LEU
463
HELX_P
A
SER
473
C
SER
467
5
24
5
A
SER
478
C
SER
472
HELX_P
A
GLY
493
C
GLY
487
1
25
16
A
PRO
496
C
PRO
490
HELX_P
A
ARG
514
C
ARG
508
1
26
19
A
GLY
515
C
GLY
509
HELX_P
A
PHE
526
C
PHE
520
1
27
12
A
ASN
527
C
ASN
521
HELX_P
A
VAL
530
C
VAL
524
5
28
4
A
PRO
540
C
PRO
534
HELX_P
A
LEU
545
C
LEU
539
1
29
6
disulf
2.065
A
CYS
316
C
SG
CYS
318
1_555
A
CYS
366
C
SG
CYS
368
1_555
covale
1.608
both
T
G
5
A
O3'
G
5
1_555
T
GDO
6
A
P
GDO
6
1_555
covale
1.626
both
P
G
5
B
O3'
G
5
1_555
P
GDO
6
B
P
GDO
6
1_555
hydrog
WATSON-CRICK
T
C
4
A
N3
C
4
1_555
P
G
5
B
N1
G
5
1_555
hydrog
WATSON-CRICK
T
C
4
A
N4
C
4
1_555
P
G
5
B
O6
G
5
1_555
hydrog
WATSON-CRICK
T
C
4
A
O2
C
4
1_555
P
G
5
B
N2
G
5
1_555
hydrog
G-C PAIR
T
G
5
A
N1
G
5
1_555
P
C
4
B
N3
C
4
1_555
VIRAL PROTEIN, TRANSFERASE/RNA
RDRP, loopless DELTA8, ternary complex, product complex, Flaviviridae, hepatitis C virus, VIRAL PROTEIN, TRANSFERASE-RNA complex
POLG_HCVJF
UNP
2
2443
Q99IB8
SMSYSWTGALITPCSPEEEKLPINPLSNSLLRYHNKVYCTTSKSASQRAKKVTFDRTQVLDAHYDSVLKDIKLAASKVSA
RLLTLEEACQLTPPHSARSKYGFGAKEVRSLSGRAVNHIKSVWKDLLEDPQTPIPTTIMAKNEVFCVDPAKGGKKPARLI
VYPDLGVRVCEKMALYDITQKLPQAVMGASYGFQYSPAQRVEYLLKAWAEKKDPMGFSYDTRCFDSTVTERDIRTEESIY
QACSLPEEARTAIHSLTERLYVGGPMFNSKGQTCGYRRCRASGVLTTSMGNTITCYVKALAACKAAGIVAPTMLVCGDDL
VVISESQGTEEDERNLRAFTEAMTRYSAPPGDPPRPEYDLELITSCSSNVSVALGPRGRRRYYLTRDPTTPLARAAWETV
RHSPINSWLGNIIQYAPTIWVRMVLMTHFFSILMVQDTLDQNL
POLG_HCVJF
UNP
2
2896
Q99IB8
VNPLDLPAIIERLHGLDAFSMHTYSHHELTRVASALRKLGAPPLRVWKSRARAVRASLISRGGKAAVCGRYLFNWAVKTK
LKLTPLPEARLLDLSSWFTVGAGGGDIFHSVSRARPR
4E78
PDB
1
1
4E78
UACCG(GDO)
2443
2885
4E78
1
443
Q99IB8
A
1
3
445
2896
3012
4E78
454
570
Q99IB8
A
2
448
564
1
6
4E78
1
6
4E78
T
3
1
6
1
6
4E78
1
6
4E78
P
3
1
6
1
expression tag
MET
-1
4E78
A
Q99IB8
UNP
1
1
expression tag
SER
0
4E78
A
Q99IB8
UNP
2
1
GLU
engineered mutation
GLN
86
4E78
A
Q99IB8
UNP
2528
88
1
GLU
engineered mutation
GLN
87
4E78
A
Q99IB8
UNP
2529
89
2
linker
GLY
444
4E78
A
Q99IB8
UNP
446
2
linker
GLY
445
4E78
A
Q99IB8
UNP
447
2
expression tag
LEU
571
4E78
A
Q99IB8
UNP
565
2
expression tag
GLU
572
4E78
A
Q99IB8
UNP
566
2
expression tag
HIS
573
4E78
A
Q99IB8
UNP
567
2
expression tag
HIS
574
4E78
A
Q99IB8
UNP
568
2
expression tag
HIS
575
4E78
A
Q99IB8
UNP
569
2
expression tag
HIS
576
4E78
A
Q99IB8
UNP
570
2
expression tag
HIS
577
4E78
A
Q99IB8
UNP
571
2
expression tag
HIS
578
4E78
A
Q99IB8
UNP
572
5
2
3
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
4
C
TYR
6
A
TRP
6
C
TRP
8
A
THR
273
C
THR
275
A
ARG
277
C
ARG
279
A
GLY
264
C
GLY
266
A
PHE
267
C
PHE
269
A
THR
136
C
THR
138
A
LYS
141
C
LYS
143
A
ARG
158
C
ARG
160
A
TYR
162
C
TYR
164
A
VAL
37
C
VAL
39
A
CYS
39
C
CYS
41
A
VAL
144
C
VAL
146
A
CYS
146
C
CYS
148
A
PRO
214
C
PRO
216
A
TYR
219
C
TYR
221
A
ASP
319
C
ASP
321
A
GLU
325
C
GLU
327
A
VAL
309
C
VAL
311
A
CYS
316
C
CYS
318
A
ASN
369
C
ASN
371
A
LEU
374
C
LEU
376
A
ARG
380
C
ARG
382
A
THR
385
C
THR
387
170
P 65